Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58347.t1 | AET02074.1 | 95.2 | 293 | 14 | 0 | 7 | 299 | 8 | 300 | 2.10E-151 | 545 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58347.t1 | Q9M2E2 | 55.7 | 298 | 124 | 5 | 1 | 295 | 1 | 293 | 4.2e-84 | 312.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58347.t1 | G7J258 | 95.2 | 293 | 14 | 0 | 7 | 299 | 8 | 300 | 1.5e-151 | 545.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58347.t1 | MTR_8g031960 | 95.222 | 293 | 14 | 0 | 7 | 299 | 8 | 300 | 0.0 | 575 |
| MS.gene58347.t1 | MTR_8g031980 | 91.186 | 295 | 26 | 0 | 1 | 295 | 1 | 295 | 0.0 | 552 |
| MS.gene58347.t1 | MTR_8g031940 | 77.667 | 300 | 65 | 2 | 1 | 299 | 1 | 299 | 4.56e-169 | 471 |
| MS.gene58347.t1 | MTR_8g031990 | 69.900 | 299 | 89 | 1 | 1 | 299 | 1 | 298 | 2.90e-154 | 433 |
| MS.gene58347.t1 | MTR_8g032020 | 70.569 | 299 | 86 | 2 | 2 | 299 | 3 | 300 | 1.56e-153 | 431 |
| MS.gene58347.t1 | MTR_8g032000 | 69.360 | 297 | 91 | 0 | 1 | 297 | 1 | 297 | 1.99e-153 | 431 |
| MS.gene58347.t1 | MTR_8g032010 | 69.831 | 295 | 89 | 0 | 1 | 295 | 1 | 295 | 5.33e-153 | 430 |
| MS.gene58347.t1 | MTR_7g076660 | 58.108 | 296 | 110 | 2 | 1 | 295 | 1 | 283 | 9.24e-123 | 353 |
| MS.gene58347.t1 | MTR_7g076660 | 58.419 | 291 | 107 | 2 | 6 | 295 | 7 | 284 | 1.66e-121 | 350 |
| MS.gene58347.t1 | MTR_7g076655 | 57.000 | 300 | 114 | 3 | 1 | 299 | 1 | 286 | 1.64e-120 | 347 |
| MS.gene58347.t1 | MTR_8g031910 | 59.122 | 296 | 108 | 4 | 1 | 295 | 1 | 284 | 5.24e-117 | 338 |
| MS.gene58347.t1 | MTR_8g031600 | 56.081 | 296 | 126 | 2 | 1 | 294 | 1 | 294 | 3.42e-114 | 332 |
| MS.gene58347.t1 | MTR_8g031630 | 56.081 | 296 | 125 | 4 | 1 | 294 | 1 | 293 | 1.98e-113 | 330 |
| MS.gene58347.t1 | MTR_8g031610 | 56.357 | 291 | 123 | 3 | 5 | 294 | 3 | 290 | 2.51e-112 | 327 |
| MS.gene58347.t1 | MTR_8g031900 | 53.872 | 297 | 132 | 2 | 1 | 297 | 1 | 292 | 7.01e-112 | 325 |
| MS.gene58347.t1 | MTR_7g076660 | 57.565 | 271 | 101 | 2 | 26 | 295 | 2 | 259 | 6.31e-111 | 322 |
| MS.gene58347.t1 | MTR_7g076665 | 56.040 | 298 | 126 | 3 | 1 | 297 | 1 | 294 | 3.35e-110 | 321 |
| MS.gene58347.t1 | MTR_8g031650 | 56.794 | 287 | 119 | 4 | 10 | 294 | 104 | 387 | 2.39e-109 | 323 |
| MS.gene58347.t1 | MTR_8g031650 | 57.843 | 102 | 41 | 2 | 170 | 269 | 2 | 103 | 1.38e-35 | 132 |
| MS.gene58347.t1 | MTR_5g062280 | 54.237 | 295 | 130 | 3 | 1 | 294 | 1 | 291 | 9.56e-109 | 318 |
| MS.gene58347.t1 | MTR_8g031650 | 56.794 | 287 | 119 | 4 | 10 | 294 | 270 | 553 | 1.99e-107 | 323 |
| MS.gene58347.t1 | MTR_8g031650 | 56.089 | 271 | 115 | 3 | 1 | 269 | 1 | 269 | 1.35e-100 | 306 |
| MS.gene58347.t1 | MTR_3g079320 | 48.649 | 296 | 146 | 3 | 5 | 295 | 9 | 303 | 3.17e-89 | 268 |
| MS.gene58347.t1 | MTR_8g032030 | 74.713 | 174 | 43 | 1 | 1 | 173 | 1 | 174 | 4.78e-86 | 258 |
| MS.gene58347.t1 | MTR_7g106800 | 48.649 | 296 | 92 | 4 | 7 | 297 | 9 | 249 | 7.09e-85 | 256 |
| MS.gene58347.t1 | MTR_8g031850 | 45.455 | 297 | 119 | 4 | 1 | 297 | 1 | 254 | 1.24e-84 | 255 |
| MS.gene58347.t1 | MTR_3g098470 | 40.132 | 304 | 144 | 6 | 4 | 295 | 32 | 309 | 2.04e-68 | 215 |
| MS.gene58347.t1 | MTR_5g083430 | 55.294 | 170 | 76 | 0 | 127 | 296 | 13 | 182 | 2.75e-65 | 203 |
| MS.gene58347.t1 | MTR_1g031180 | 38.487 | 304 | 149 | 6 | 4 | 295 | 37 | 314 | 4.33e-61 | 197 |
| MS.gene58347.t1 | MTR_4g087460 | 38.538 | 301 | 144 | 9 | 6 | 290 | 21 | 296 | 6.32e-56 | 183 |
| MS.gene58347.t1 | MTR_8g096060 | 36.482 | 307 | 148 | 7 | 4 | 295 | 34 | 308 | 3.10e-55 | 181 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58347.t1 | AT1G01800 | 57.388 | 291 | 119 | 4 | 7 | 295 | 5 | 292 | 3.53e-114 | 331 |
| MS.gene58347.t1 | AT3G61220 | 55.705 | 298 | 124 | 5 | 1 | 295 | 1 | 293 | 2.34e-113 | 329 |
| MS.gene58347.t1 | AT3G61220 | 56.507 | 292 | 119 | 5 | 7 | 295 | 14 | 300 | 2.78e-112 | 327 |
| MS.gene58347.t1 | AT3G61220 | 56.507 | 292 | 119 | 5 | 7 | 295 | 38 | 324 | 6.08e-112 | 327 |
| MS.gene58347.t1 | AT2G24190 | 54.153 | 301 | 124 | 6 | 1 | 295 | 1 | 293 | 6.00e-109 | 318 |
| MS.gene58347.t1 | AT2G24190 | 54.915 | 295 | 119 | 6 | 7 | 295 | 12 | 298 | 9.74e-108 | 315 |
| MS.gene58347.t1 | AT1G01800 | 53.398 | 206 | 93 | 2 | 90 | 295 | 55 | 257 | 2.64e-73 | 226 |
| MS.gene58347.t1 | AT5G51030 | 38.158 | 304 | 150 | 6 | 4 | 295 | 35 | 312 | 7.96e-66 | 209 |
| MS.gene58347.t1 | AT3G59710 | 39.446 | 289 | 145 | 7 | 6 | 290 | 18 | 280 | 1.72e-61 | 197 |
| MS.gene58347.t1 | AT3G59710 | 39.446 | 289 | 145 | 7 | 6 | 290 | 28 | 290 | 2.00e-61 | 197 |
| MS.gene58347.t1 | AT3G59710 | 39.446 | 289 | 145 | 7 | 6 | 290 | 47 | 309 | 4.83e-61 | 197 |
| MS.gene58347.t1 | AT5G61830 | 38.361 | 305 | 151 | 6 | 4 | 295 | 34 | 314 | 2.36e-59 | 192 |
| MS.gene58347.t1 | AT5G61830 | 38.361 | 305 | 151 | 6 | 4 | 295 | 34 | 314 | 2.36e-59 | 192 |
Find 58 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGGCAAACTTGATATTC+TGG | 0.218733 | 8.2:+66202232 | MS.gene58347:CDS |
| TGTTTGCAAATAAATTATTA+TGG | 0.282681 | 8.2:+66202865 | MS.gene58347:CDS |
| TGTAATTAATGACAAAGATT+TGG | 0.329021 | 8.2:+66202633 | MS.gene58347:CDS |
| AGCATCACCAAAGATTTCTT+TGG | 0.329916 | 8.2:-66204401 | None:intergenic |
| ATCAGACGATGAAAGGAAAA+AGG | 0.341584 | 8.2:+66202810 | MS.gene58347:CDS |
| TTGGTGAATCAGATAACTTT+AGG | 0.350628 | 8.2:-66202921 | None:intergenic |
| ATCCACTACAGGGAAGTTAA+AGG | 0.358802 | 8.2:+66202960 | MS.gene58347:CDS |
| CATCCACTTTCTCTTCAGTT+AGG | 0.365391 | 8.2:-66204429 | None:intergenic |
| ACAGGATCAAACAAAGGAAT+TGG | 0.374893 | 8.2:+66202020 | MS.gene58347:CDS |
| AGATTTCAAAGAAGGTTCAT+TGG | 0.391106 | 8.2:+66204474 | MS.gene58347:CDS |
| GAATGGACCAAAGAAATCTT+TGG | 0.391570 | 8.2:+66204394 | MS.gene58347:CDS |
| TTTCTAGAAGATTTCAAAGA+AGG | 0.405469 | 8.2:+66204466 | MS.gene58347:CDS |
| ATAAGCATTCATAGCAGCTT+TGG | 0.413204 | 8.2:-66204539 | None:intergenic |
| TATGTTATCACAGATATAAC+TGG | 0.425196 | 8.2:+66204619 | MS.gene58347:CDS |
| CTTCCCAATGGAAGTCCATC+TGG | 0.431273 | 8.2:+66204700 | MS.gene58347:CDS |
| GTTAACAATGCAGGGATTAG+TGG | 0.432718 | 8.2:+66202607 | MS.gene58347:CDS |
| GAATTGGATTTGAGATAGTA+AGG | 0.438309 | 8.2:+66202036 | MS.gene58347:CDS |
| AGCAAAGGCTGGCCTAAAAC+TGG | 0.443573 | 8.2:+66204499 | MS.gene58347:CDS |
| TACCTTTAACTTCCCTGTAG+TGG | 0.446734 | 8.2:-66202962 | None:intergenic |
| TTTGAAACACTCAAAGCCTC+TGG | 0.460145 | 8.2:+66202125 | MS.gene58347:CDS |
| TCCAGGATTGCAGTAGTGAC+AGG | 0.461294 | 8.2:+66202002 | MS.gene58347:intron |
| ACAGATATAACTGGTAATAC+TGG | 0.462174 | 8.2:+66204628 | MS.gene58347:CDS |
| CATCTGGACAGTTCTATCAT+AGG | 0.465732 | 8.2:+66204716 | MS.gene58347:CDS |
| GTGAATGTATCATCCACTAC+AGG | 0.468640 | 8.2:+66202949 | MS.gene58347:CDS |
| GATGATACATTCACAATCCT+TGG | 0.480577 | 8.2:-66202940 | None:intergenic |
| TCAATGCAGGTTAACAATGC+AGG | 0.485830 | 8.2:+66202598 | MS.gene58347:intron |
| GTAAGGCAATTAGCTTCAGC+TGG | 0.490726 | 8.2:+66202053 | MS.gene58347:CDS |
| ATAACATAGTACTAATCAAA+AGG | 0.493573 | 8.2:-66204755 | None:intergenic |
| TAACCTAACTGAAGAGAAAG+TGG | 0.501755 | 8.2:+66204426 | MS.gene58347:CDS |
| ATACTATTGATGCATAAAGT+AGG | 0.503498 | 8.2:-66204586 | None:intergenic |
| AGGCATTATCAGACGATGAA+AGG | 0.506982 | 8.2:+66202803 | MS.gene58347:intron |
| CTGTCCAGATGGACTTCCAT+TGG | 0.513338 | 8.2:-66204704 | None:intergenic |
| ATATCTGTGATAACATAGCC+AGG | 0.520888 | 8.2:-66204613 | None:intergenic |
| ATTAGCTTCAGCTGGAATCA+AGG | 0.525651 | 8.2:+66202061 | MS.gene58347:CDS |
| TGTCCAGATGGACTTCCATT+GGG | 0.528585 | 8.2:-66204703 | None:intergenic |
| GCAGCTTTGGACAAGACATA+AGG | 0.544110 | 8.2:-66204526 | None:intergenic |
| TGCATCAATAGTATTTGCCC+TGG | 0.547248 | 8.2:+66204595 | MS.gene58347:CDS |
| CAATGCAGGTTAACAATGCA+GGG | 0.554639 | 8.2:+66202599 | MS.gene58347:intron |
| ACAGCAAGAGATGAGAAAAG+AGG | 0.563297 | 8.2:+66202092 | MS.gene58347:CDS |
| GTGAATCAGATAACTTTAGG+AGG | 0.565611 | 8.2:-66202918 | None:intergenic |
| TGTATTTCATCAACTAGATG+TGG | 0.570787 | 8.2:+66202163 | MS.gene58347:CDS |
| CTATGATAGAACTGTCCAGA+TGG | 0.572263 | 8.2:-66204715 | None:intergenic |
| GGTCTCTTAACTGCTGAAGA+AGG | 0.578507 | 8.2:+66204649 | MS.gene58347:CDS |
| GTTCATTGGAAAGCAAAGGC+TGG | 0.581607 | 8.2:+66204488 | MS.gene58347:CDS |
| AGTGTCTCAAACATATGAGT+TGG | 0.584257 | 8.2:+66202834 | MS.gene58347:CDS |
| TGAATCAGATAACTTTAGGA+GGG | 0.593989 | 8.2:-66202917 | None:intergenic |
| AGATGGGACAAACTGCAGAA+AGG | 0.596749 | 8.2:+66201690 | None:intergenic |
| GAAGGTTCATTGGAAAGCAA+AGG | 0.604153 | 8.2:+66204484 | MS.gene58347:CDS |
| AAGCTTGCATTGCTTCCCAA+TGG | 0.612489 | 8.2:+66204688 | MS.gene58347:CDS |
| GAATCAGATAACTTTAGGAG+GGG | 0.624352 | 8.2:-66202916 | None:intergenic |
| TGAATGTATCATCCACTACA+GGG | 0.652351 | 8.2:+66202950 | MS.gene58347:CDS |
| AAAGGCTGGCCTAAAACTGG+TGG | 0.657155 | 8.2:+66204502 | MS.gene58347:CDS |
| TGTGGCTAATGCTGCAAGTG+TGG | 0.661469 | 8.2:+66202181 | MS.gene58347:CDS |
| AACAAAATCAGATAAACCAG+AGG | 0.663643 | 8.2:-66202141 | None:intergenic |
| TAAAGTTATCTGATTCACCA+AGG | 0.666656 | 8.2:+66202923 | MS.gene58347:CDS |
| TATCTGTGATAACATAGCCA+GGG | 0.672610 | 8.2:-66204612 | None:intergenic |
| GTAGTGACAGGATCAAACAA+AGG | 0.701245 | 8.2:+66202014 | MS.gene58347:CDS |
| AGCTTCAGCTGGAATCAAGG+TGG | 0.722149 | 8.2:+66202064 | MS.gene58347:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATTAAAATCAAATTAAAA+AGG | - | chr8.2:66203683-66203702 | None:intergenic | 10.0% |
| !! | CAAAAAAAATTAATTGAATA+AGG | + | chr8.2:66204050-66204069 | MS.gene58347:intron | 10.0% |
| !!! | CTTATTCAATTAATTTTTTT+TGG | - | chr8.2:66204052-66204071 | None:intergenic | 10.0% |
| !!! | TTTTAATTTGATTTTAATGT+TGG | + | chr8.2:66203683-66203702 | MS.gene58347:intron | 10.0% |
| !! | AAAAAAATGATGTAATTGTT+TGG | + | chr8.2:66202754-66202773 | MS.gene58347:intron | 15.0% |
| !! | AAAAAATGATGTAATTGTTT+GGG | + | chr8.2:66202755-66202774 | MS.gene58347:intron | 15.0% |
| !! | CAAAGTTTCATTTAAAAAAA+TGG | - | chr8.2:66202283-66202302 | None:intergenic | 15.0% |
| !! | GATAATAAAATTGTAATGTT+GGG | + | chr8.2:66203619-66203638 | MS.gene58347:intron | 15.0% |
| !! | TAATGATTTACTTTCTATTA+GGG | - | chr8.2:66203896-66203915 | None:intergenic | 15.0% |
| !! | TGATAATAAAATTGTAATGT+TGG | + | chr8.2:66203618-66203637 | MS.gene58347:intron | 15.0% |
| !! | TGTTTGCAAATAAATTATTA+TGG | + | chr8.2:66202865-66202884 | MS.gene58347:CDS | 15.0% |
| !! | TTAATGATTTACTTTCTATT+AGG | - | chr8.2:66203897-66203916 | None:intergenic | 15.0% |
| !! | TTTCATTTAAAAAAATGGAA+AGG | - | chr8.2:66202278-66202297 | None:intergenic | 15.0% |
| !! | TTTGTATTTCTTACAAAATT+GGG | + | chr8.2:66203543-66203562 | MS.gene58347:intron | 15.0% |
| !!! | GTTTTATTAGAACTTTATTT+TGG | + | chr8.2:66202391-66202410 | MS.gene58347:intron | 15.0% |
| !!! | TCAATTAATTTTTTTTGGAT+TGG | - | chr8.2:66204047-66204066 | None:intergenic | 15.0% |
| !!! | TGTAAAAAAGTGTATATTAA+GGG | + | chr8.2:66202716-66202735 | MS.gene58347:intron | 15.0% |
| !!! | TTAATATACACTTTTTTACA+GGG | - | chr8.2:66202716-66202735 | None:intergenic | 15.0% |
| !!! | TTATTGTTTTTCTTATATTG+CGG | - | chr8.2:66203364-66203383 | None:intergenic | 15.0% |
| !!! | TTTTGTATTTCTTACAAAAT+TGG | + | chr8.2:66203542-66203561 | MS.gene58347:intron | 15.0% |
| !! | AATAAGTTCCACAATTAAAA+TGG | - | chr8.2:66204282-66204301 | None:intergenic | 20.0% |
| !! | AATGATTTACTTTCTATTAG+GGG | - | chr8.2:66203895-66203914 | None:intergenic | 20.0% |
| !! | AATTTATTCTTCAATTGTAG+AGG | + | chr8.2:66203915-66203934 | MS.gene58347:intron | 20.0% |
| !! | ATGTATAAACAACAAAACTA+AGG | - | chr8.2:66202342-66202361 | None:intergenic | 20.0% |
| !! | ATTCTGGTAACATAAAAATT+TGG | + | chr8.2:66202248-66202267 | MS.gene58347:intron | 20.0% |
| !! | GGAATAAAAAAAAAGTAACA+TGG | - | chr8.2:66202321-66202340 | None:intergenic | 20.0% |
| !! | TGTAATTAATGACAAAGATT+TGG | + | chr8.2:66202633-66202652 | MS.gene58347:CDS | 20.0% |
| !!! | AAAGTTTTAGAATTCATTCT+TGG | + | chr8.2:66201743-66201762 | MS.gene58347:intron | 20.0% |
| !!! | AATTTTTCCATCAATATCTT+AGG | + | chr8.2:66203150-66203169 | MS.gene58347:intron | 20.0% |
| !!! | CTGTAAAAAAGTGTATATTA+AGG | + | chr8.2:66202715-66202734 | MS.gene58347:intron | 20.0% |
| !!! | CTTAATATACACTTTTTTAC+AGG | - | chr8.2:66202717-66202736 | None:intergenic | 20.0% |
| !!! | TCATTTTATTAAAGTTTCCA+TGG | - | chr8.2:66203425-66203444 | None:intergenic | 20.0% |
| !!! | TCCTGATATATTAATTTGAA+GGG | + | chr8.2:66202518-66202537 | MS.gene58347:intron | 20.0% |
| !!! | TGCTCATAATGTTAATTTTT+TGG | + | chr8.2:66203119-66203138 | MS.gene58347:intron | 20.0% |
| !!! | TTCCTGATATATTAATTTGA+AGG | + | chr8.2:66202517-66202536 | MS.gene58347:intron | 20.0% |
| !!! | TTTTATAGTCTCTTAGTATT+TGG | + | chr8.2:66204311-66204330 | MS.gene58347:intron | 20.0% |
| !!! | TTTTTGTCCATGTTTTAATT+TGG | + | chr8.2:66203570-66203589 | MS.gene58347:intron | 20.0% |
| ! | AGTAAGTGTCTATAAACTAT+AGG | + | chr8.2:66202681-66202700 | MS.gene58347:intron | 25.0% |
| ! | ATACTATTGATGCATAAAGT+AGG | - | chr8.2:66204589-66204608 | None:intergenic | 25.0% |
| ! | CAATATTCATAAAAACTCCA+TGG | + | chr8.2:66203405-66203424 | MS.gene58347:intron | 25.0% |
| ! | CATTTAAAAAAATGGAAAGG+AGG | - | chr8.2:66202275-66202294 | None:intergenic | 25.0% |
| ! | CTAGTGTTAATCAATTCTTA+AGG | + | chr8.2:66202999-66203018 | MS.gene58347:intron | 25.0% |
| ! | CTTAAGAATTGATTAACACT+AGG | - | chr8.2:66203001-66203020 | None:intergenic | 25.0% |
| ! | TACGTAACCAAATTAAAACA+TGG | - | chr8.2:66203580-66203599 | None:intergenic | 25.0% |
| ! | TATGTTATCACAGATATAAC+TGG | + | chr8.2:66204619-66204638 | MS.gene58347:CDS | 25.0% |
| ! | TCCCTTCAAATTAATATATC+AGG | - | chr8.2:66202522-66202541 | None:intergenic | 25.0% |
| ! | TTAGAATTCATTCTTGGTAA+TGG | + | chr8.2:66201749-66201768 | MS.gene58347:intron | 25.0% |
| !! | AAGAATGCAAGATTTCATTT+TGG | - | chr8.2:66203100-66203119 | None:intergenic | 25.0% |
| !! | CATGGAGTTTTTATGAATAT+TGG | - | chr8.2:66203407-66203426 | None:intergenic | 25.0% |
| !! | GATTTTGTCAAATCTCAATT+TGG | + | chr8.2:66202215-66202234 | MS.gene58347:CDS | 25.0% |
| !! | TAAGAAAATTTGTTCAATGC+AGG | + | chr8.2:66202585-66202604 | MS.gene58347:intron | 25.0% |
| !! | TTTCTAGAAGATTTCAAAGA+AGG | + | chr8.2:66204466-66204485 | MS.gene58347:CDS | 25.0% |
| !!! | AAGGTATTTTGTCAATTTGA+AGG | + | chr8.2:66204069-66204088 | MS.gene58347:intron | 25.0% |
| !!! | GTATTTAATTTGACCTTTTC+AGG | + | chr8.2:66202783-66202802 | MS.gene58347:intron | 25.0% |
| !!! | TGGCTTTAACTTATTGAATA+AGG | + | chr8.2:66204331-66204350 | MS.gene58347:intron | 25.0% |
| AACAAAATCAGATAAACCAG+AGG | - | chr8.2:66202144-66202163 | None:intergenic | 30.0% | |
| AAGTTCCACAATTAAAATGG+TGG | - | chr8.2:66204279-66204298 | None:intergenic | 30.0% | |
| ACAGATATAACTGGTAATAC+TGG | + | chr8.2:66204628-66204647 | MS.gene58347:CDS | 30.0% | |
| AGATTTCAAAGAAGGTTCAT+TGG | + | chr8.2:66204474-66204493 | MS.gene58347:CDS | 30.0% | |
| AGTTTATAGACACTTACTCT+AGG | - | chr8.2:66202679-66202698 | None:intergenic | 30.0% | |
| ATTCTTCAATTGTAGAGGAA+TGG | + | chr8.2:66203920-66203939 | MS.gene58347:intron | 30.0% | |
| ATTTGGCAAACTTGATATTC+TGG | + | chr8.2:66202232-66202251 | MS.gene58347:CDS | 30.0% | |
| GTTTATAGACACTTACTCTA+GGG | - | chr8.2:66202678-66202697 | None:intergenic | 30.0% | |
| TAAAGTTATCTGATTCACCA+AGG | + | chr8.2:66202923-66202942 | MS.gene58347:CDS | 30.0% | |
| TAATGTCACTAGAACAAAGT+AGG | + | chr8.2:66203035-66203054 | MS.gene58347:intron | 30.0% | |
| TAGGTTACCTAAGATATTGA+TGG | - | chr8.2:66203160-66203179 | None:intergenic | 30.0% | |
| TCCAGAGAATAAAAAACGAA+TGG | + | chr8.2:66204377-66204396 | MS.gene58347:intron | 30.0% | |
| TGTATTTCATCAACTAGATG+TGG | + | chr8.2:66202163-66202182 | MS.gene58347:CDS | 30.0% | |
| TTGGTGAATCAGATAACTTT+AGG | - | chr8.2:66202924-66202943 | None:intergenic | 30.0% | |
| ! | GAATTGGATTTGAGATAGTA+AGG | + | chr8.2:66202036-66202055 | MS.gene58347:CDS | 30.0% |
| ! | GTTTTTCTTATATTGCGGTT+TGG | - | chr8.2:66203359-66203378 | None:intergenic | 30.0% |
| ! | TGAATCAGATAACTTTAGGA+GGG | - | chr8.2:66202920-66202939 | None:intergenic | 30.0% |
| !!! | GTTTTTCTATTGGATTGGTT+CGG | - | chr8.2:66203207-66203226 | None:intergenic | 30.0% |
| !!! | TAGAACCACCATTTTAATTG+TGG | + | chr8.2:66204271-66204290 | MS.gene58347:intron | 30.0% |
| !!! | TCCATTCGTTTTTTATTCTC+TGG | - | chr8.2:66204381-66204400 | None:intergenic | 30.0% |
| ACAGGATCAAACAAAGGAAT+TGG | + | chr8.2:66202020-66202039 | MS.gene58347:CDS | 35.0% | |
| AGCATCACCAAAGATTTCTT+TGG | - | chr8.2:66204404-66204423 | None:intergenic | 35.0% | |
| AGGTAACCTAGATAGAAAGT+AGG | + | chr8.2:66203170-66203189 | MS.gene58347:intron | 35.0% | |
| AGTGTCTCAAACATATGAGT+TGG | + | chr8.2:66202834-66202853 | MS.gene58347:CDS | 35.0% | |
| ATAAGCATTCATAGCAGCTT+TGG | - | chr8.2:66204542-66204561 | None:intergenic | 35.0% | |
| ATATCTGTGATAACATAGCC+AGG | - | chr8.2:66204616-66204635 | None:intergenic | 35.0% | |
| ATCAGACGATGAAAGGAAAA+AGG | + | chr8.2:66202810-66202829 | MS.gene58347:CDS | 35.0% | |
| GAATGGACCAAAGAAATCTT+TGG | + | chr8.2:66204394-66204413 | MS.gene58347:CDS | 35.0% | |
| GATGATACATTCACAATCCT+TGG | - | chr8.2:66202943-66202962 | None:intergenic | 35.0% | |
| GGTAACCTAGATAGAAAGTA+GGG | + | chr8.2:66203171-66203190 | MS.gene58347:intron | 35.0% | |
| GTAACCTAGATAGAAAGTAG+GGG | + | chr8.2:66203172-66203191 | MS.gene58347:intron | 35.0% | |
| GTGAATCAGATAACTTTAGG+AGG | - | chr8.2:66202921-66202940 | None:intergenic | 35.0% | |
| GTGTTACAGTGATGACATAA+CGG | - | chr8.2:66204215-66204234 | None:intergenic | 35.0% | |
| TAACCTAACTGAAGAGAAAG+TGG | + | chr8.2:66204426-66204445 | MS.gene58347:CDS | 35.0% | |
| TATCTGTGATAACATAGCCA+GGG | - | chr8.2:66204615-66204634 | None:intergenic | 35.0% | |
| TGAATGTATCATCCACTACA+GGG | + | chr8.2:66202950-66202969 | MS.gene58347:CDS | 35.0% | |
| ! | AACTTGGAATGTCTTTTGCT+TGG | + | chr8.2:66203062-66203081 | MS.gene58347:intron | 35.0% |
| ! | ACTTGGAATGTCTTTTGCTT+GGG | + | chr8.2:66203063-66203082 | MS.gene58347:intron | 35.0% |
| ! | AGGTAAAAAAGTATGCGGTT+TGG | - | chr8.2:66203819-66203838 | None:intergenic | 35.0% |
| ! | GAATCAGATAACTTTAGGAG+GGG | - | chr8.2:66202919-66202938 | None:intergenic | 35.0% |
| ! | TTGCGGTTTTTCTATTGGAT+TGG | - | chr8.2:66203212-66203231 | None:intergenic | 35.0% |
| !! | AAAAAGTATGCGGTTTGGTT+TGG | - | chr8.2:66203814-66203833 | None:intergenic | 35.0% |
| !! | GTCAATATTCTAAAACCACG+CGG | + | chr8.2:66201967-66201986 | MS.gene58347:intron | 35.0% |
| !! | TCAATATTCTAAAACCACGC+GGG | + | chr8.2:66201968-66201987 | MS.gene58347:intron | 35.0% |
| !! | TCTTATATTGCGGTTTGGTT+TGG | - | chr8.2:66203354-66203373 | None:intergenic | 35.0% |
| !!! | ATGACATAACGGATTTTGAC+AGG | - | chr8.2:66204204-66204223 | None:intergenic | 35.0% |
| !!! | TACTTTTTTACCTTGCGGTT+TGG | + | chr8.2:66203826-66203845 | MS.gene58347:intron | 35.0% |
| AAACCGCAAAAAACCGCATT+TGG | + | chr8.2:66203251-66203270 | MS.gene58347:intron | 40.0% | |
| AACACCCCTACTTTCTATCT+AGG | - | chr8.2:66203179-66203198 | None:intergenic | 40.0% | |
| ACAGCAAGAGATGAGAAAAG+AGG | + | chr8.2:66202092-66202111 | MS.gene58347:CDS | 40.0% | |
| AGGCATTATCAGACGATGAA+AGG | + | chr8.2:66202803-66202822 | MS.gene58347:intron | 40.0% | |
| ATCCACTACAGGGAAGTTAA+AGG | + | chr8.2:66202960-66202979 | MS.gene58347:CDS | 40.0% | |
| CAAACCAAACCAAACCAATG+CGG | - | chr8.2:66203761-66203780 | None:intergenic | 40.0% | |
| CAATGCAGGTTAACAATGCA+GGG | + | chr8.2:66202599-66202618 | MS.gene58347:intron | 40.0% | |
| CATCCACTTTCTCTTCAGTT+AGG | - | chr8.2:66204432-66204451 | None:intergenic | 40.0% | |
| CATCTGGACAGTTCTATCAT+AGG | + | chr8.2:66204716-66204735 | MS.gene58347:CDS | 40.0% | |
| CTATGATAGAACTGTCCAGA+TGG | - | chr8.2:66204718-66204737 | None:intergenic | 40.0% | |
| GAACAAAGTAGGAGCAAACT+TGG | + | chr8.2:66203046-66203065 | MS.gene58347:intron | 40.0% | |
| GAAGGTTCATTGGAAAGCAA+AGG | + | chr8.2:66204484-66204503 | MS.gene58347:CDS | 40.0% | |
| GAATACATCCGAACCAAATG+CGG | - | chr8.2:66203267-66203286 | None:intergenic | 40.0% | |
| GCAAAAAACCGCATTTGGTT+CGG | + | chr8.2:66203256-66203275 | MS.gene58347:intron | 40.0% | |
| GTAGTGACAGGATCAAACAA+AGG | + | chr8.2:66202014-66202033 | MS.gene58347:CDS | 40.0% | |
| GTGAATGTATCATCCACTAC+AGG | + | chr8.2:66202949-66202968 | MS.gene58347:CDS | 40.0% | |
| GTTAACAATGCAGGGATTAG+TGG | + | chr8.2:66202607-66202626 | MS.gene58347:CDS | 40.0% | |
| TAAAAGTCATCCAAACCGCA+AGG | - | chr8.2:66203839-66203858 | None:intergenic | 40.0% | |
| TCAATGCAGGTTAACAATGC+AGG | + | chr8.2:66202598-66202617 | MS.gene58347:intron | 40.0% | |
| TGCATCAATAGTATTTGCCC+TGG | + | chr8.2:66204595-66204614 | MS.gene58347:CDS | 40.0% | |
| ! | ACATAAGGACCACCAGTTTT+AGG | - | chr8.2:66204514-66204533 | None:intergenic | 40.0% |
| ! | ATTAGCTTCAGCTGGAATCA+AGG | + | chr8.2:66202061-66202080 | MS.gene58347:CDS | 40.0% |
| ! | CCGCAAGGTAAAAAAGTATG+CGG | - | chr8.2:66203824-66203843 | None:intergenic | 40.0% |
| ! | TACCTTTAACTTCCCTGTAG+TGG | - | chr8.2:66202965-66202984 | None:intergenic | 40.0% |
| ! | TCGTCTGATAATGCCTGAAA+AGG | - | chr8.2:66202799-66202818 | None:intergenic | 40.0% |
| ! | TTTGAAACACTCAAAGCCTC+TGG | + | chr8.2:66202125-66202144 | MS.gene58347:CDS | 40.0% |
| ! | TTTTACTCAACCGCATGGTT+TGG | + | chr8.2:66203296-66203315 | MS.gene58347:intron | 40.0% |
| !! | GCATTTGGTTCGGATGTATT+CGG | + | chr8.2:66203266-66203285 | MS.gene58347:intron | 40.0% |
| !! | TATTGCGGTTTGGTTTGGTT+TGG | - | chr8.2:66203349-66203368 | None:intergenic | 40.0% |
| !! | TCGGTTTGCGGTTTTTCTAT+TGG | - | chr8.2:66203217-66203236 | None:intergenic | 40.0% |
| !!! | AATGCGGTTTTTTGCGGTTT+TGG | - | chr8.2:66203251-66203270 | None:intergenic | 40.0% |
| !!! | CACTTTTTTACTCAACCGCA+TGG | + | chr8.2:66203291-66203310 | MS.gene58347:intron | 40.0% |
| !!! | CCGCATACTTTTTTACCTTG+CGG | + | chr8.2:66203821-66203840 | MS.gene58347:intron | 40.0% |
| !!! | GAACCAAATGCGGTTTTTTG+CGG | - | chr8.2:66203257-66203276 | None:intergenic | 40.0% |
| !!! | GGTTTTGGTTTGGATTGGTT+CGG | - | chr8.2:66203236-66203255 | None:intergenic | 40.0% |
| !!! | GGTTTTTTGCGGTTTTGGTT+TGG | - | chr8.2:66203246-66203265 | None:intergenic | 40.0% |
| !!! | TTTGCGGTTTTGGTTTGGAT+TGG | - | chr8.2:66203241-66203260 | None:intergenic | 40.0% |
| AAGCTTGCATTGCTTCCCAA+TGG | + | chr8.2:66204688-66204707 | MS.gene58347:CDS | 45.0% | |
| CAAACCAAACCAATGCGGTT+TGG | - | chr8.2:66203756-66203775 | None:intergenic | 45.0% | |
| GCAAACCAAACCAAACCATG+CGG | - | chr8.2:66203309-66203328 | None:intergenic | 45.0% | |
| GGTCTCTTAACTGCTGAAGA+AGG | + | chr8.2:66204649-66204668 | MS.gene58347:CDS | 45.0% | |
| GTTCATTGGAAAGCAAAGGC+TGG | + | chr8.2:66204488-66204507 | MS.gene58347:CDS | 45.0% | |
| ! | CAAACCAATGCGGTTTGGAT+TGG | - | chr8.2:66203751-66203770 | None:intergenic | 45.0% |
| ! | CAATGCGGTTTGGATTGGAT+CGG | - | chr8.2:66203746-66203765 | None:intergenic | 45.0% |
| ! | GTAAGGCAATTAGCTTCAGC+TGG | + | chr8.2:66202053-66202072 | MS.gene58347:CDS | 45.0% |
| ! | TGTCCAGATGGACTTCCATT+GGG | - | chr8.2:66204706-66204725 | None:intergenic | 45.0% |
| !! | CAAACCGCATTGGTTTGGTT+TGG | + | chr8.2:66203754-66203773 | MS.gene58347:intron | 45.0% |
| !! | CAATCCAAACCGCATTGGTT+TGG | + | chr8.2:66203749-66203768 | MS.gene58347:intron | 45.0% |
| !! | CGCATTGGTTTGGTTTGGTT+TGG | + | chr8.2:66203759-66203778 | MS.gene58347:intron | 45.0% |
| !! | CTTTCTATTAGGGGTGTTCG+CGG | - | chr8.2:66203886-66203905 | None:intergenic | 45.0% |
| !! | GCAGCTTTGGACAAGACATA+AGG | - | chr8.2:66204529-66204548 | None:intergenic | 45.0% |
| !! | GCATGGTTTGGTTTGGTTTG+CGG | + | chr8.2:66203308-66203327 | MS.gene58347:intron | 45.0% |
| !! | GTTTGGATTGGTTCGGTTTG+CGG | - | chr8.2:66203229-66203248 | None:intergenic | 45.0% |
| AGCTTCAGCTGGAATCAAGG+TGG | + | chr8.2:66202064-66202083 | MS.gene58347:CDS | 50.0% | |
| CGATCCAATCCAAACCGCAT+TGG | + | chr8.2:66203744-66203763 | MS.gene58347:intron | 50.0% | |
| CTTCCCAATGGAAGTCCATC+TGG | + | chr8.2:66204700-66204719 | MS.gene58347:CDS | 50.0% | |
| TCCAGGATTGCAGTAGTGAC+AGG | + | chr8.2:66202002-66202021 | MS.gene58347:intron | 50.0% | |
| TCCTGTCACTACTGCAATCC+TGG | - | chr8.2:66202006-66202025 | None:intergenic | 50.0% | |
| TGTGGCTAATGCTGCAAGTG+TGG | + | chr8.2:66202181-66202200 | MS.gene58347:CDS | 50.0% | |
| ! | CTGTCCAGATGGACTTCCAT+TGG | - | chr8.2:66204707-66204726 | None:intergenic | 50.0% |
| ! | TTGGATTGGATCGGTTGGTG+CGG | - | chr8.2:66203737-66203756 | None:intergenic | 50.0% |
| !! | AAAGGCTGGCCTAAAACTGG+TGG | + | chr8.2:66204502-66204521 | MS.gene58347:CDS | 50.0% |
| !! | AGCAAAGGCTGGCCTAAAAC+TGG | + | chr8.2:66204499-66204518 | MS.gene58347:CDS | 50.0% |
| !! | CTCAACCGCATGGTTTGGTT+TGG | + | chr8.2:66203301-66203320 | MS.gene58347:intron | 50.0% |
| !! | GCGGTTTGGTTTGGTTTGGT+TGG | - | chr8.2:66203345-66203364 | None:intergenic | 50.0% |
| GGAAACAAACACAACCCGCG+TGG | - | chr8.2:66201985-66202004 | None:intergenic | 55.0% | |
| ! | CGCGGGTTGTGTTTGTTTCC+AGG | + | chr8.2:66201985-66202004 | MS.gene58347:intron | 55.0% |
| ! | GCGGTTTGGATTGGATCGGT+TGG | - | chr8.2:66203742-66203761 | None:intergenic | 55.0% |
| !! | TATTAGGGGTGTTCGCGGTG+CGG | - | chr8.2:66203881-66203900 | None:intergenic | 55.0% |
| !! | GTTCGCGGTGCGGTTTGGTT+CGG | - | chr8.2:66203871-66203890 | None:intergenic | 60.0% |
| ! | GGGGTGTTCGCGGTGCGGTT+TGG | - | chr8.2:66203876-66203895 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 66201692 | 66204762 | 66201692 | ID=MS.gene58347 |
| chr8.2 | mRNA | 66201692 | 66204762 | 66201692 | ID=MS.gene58347.t1;Parent=MS.gene58347 |
| chr8.2 | exon | 66201692 | 66201711 | 66201692 | ID=MS.gene58347.t1.exon1;Parent=MS.gene58347.t1 |
| chr8.2 | CDS | 66201692 | 66201711 | 66201692 | ID=cds.MS.gene58347.t1;Parent=MS.gene58347.t1 |
| chr8.2 | exon | 66202007 | 66202253 | 66202007 | ID=MS.gene58347.t1.exon2;Parent=MS.gene58347.t1 |
| chr8.2 | CDS | 66202007 | 66202253 | 66202007 | ID=cds.MS.gene58347.t1;Parent=MS.gene58347.t1 |
| chr8.2 | exon | 66202607 | 66202681 | 66202607 | ID=MS.gene58347.t1.exon3;Parent=MS.gene58347.t1 |
| chr8.2 | CDS | 66202607 | 66202681 | 66202607 | ID=cds.MS.gene58347.t1;Parent=MS.gene58347.t1 |
| chr8.2 | exon | 66202805 | 66202981 | 66202805 | ID=MS.gene58347.t1.exon4;Parent=MS.gene58347.t1 |
| chr8.2 | CDS | 66202805 | 66202981 | 66202805 | ID=cds.MS.gene58347.t1;Parent=MS.gene58347.t1 |
| chr8.2 | exon | 66204382 | 66204762 | 66204382 | ID=MS.gene58347.t1.exon5;Parent=MS.gene58347.t1 |
| chr8.2 | CDS | 66204382 | 66204762 | 66204382 | ID=cds.MS.gene58347.t1;Parent=MS.gene58347.t1 |
| Gene Sequence |
| Protein sequence |
