Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58271.t1 | AET02074.1 | 94.5 | 291 | 16 | 0 | 7 | 297 | 8 | 298 | 1.70E-148 | 535.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58271.t1 | Q9M2E2 | 55.5 | 301 | 126 | 5 | 1 | 298 | 1 | 296 | 4.2e-84 | 312.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58271.t1 | G7J258 | 94.5 | 291 | 16 | 0 | 7 | 297 | 8 | 298 | 1.2e-148 | 535.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58271.t1 | MTR_8g031960 | 94.539 | 293 | 15 | 1 | 7 | 298 | 8 | 300 | 0.0 | 565 |
| MS.gene58271.t1 | MTR_8g031980 | 90.604 | 298 | 28 | 0 | 1 | 298 | 1 | 298 | 0.0 | 553 |
| MS.gene58271.t1 | MTR_8g031940 | 77.926 | 299 | 65 | 1 | 1 | 298 | 1 | 299 | 3.73e-171 | 476 |
| MS.gene58271.t1 | MTR_8g031990 | 69.799 | 298 | 90 | 0 | 1 | 298 | 1 | 298 | 8.73e-155 | 434 |
| MS.gene58271.t1 | MTR_8g032020 | 70.470 | 298 | 87 | 1 | 2 | 298 | 3 | 300 | 4.16e-154 | 432 |
| MS.gene58271.t1 | MTR_8g032000 | 69.128 | 298 | 92 | 0 | 1 | 298 | 1 | 298 | 1.73e-153 | 431 |
| MS.gene58271.t1 | MTR_8g032010 | 69.128 | 298 | 92 | 0 | 1 | 298 | 1 | 298 | 1.93e-152 | 428 |
| MS.gene58271.t1 | MTR_7g076660 | 57.860 | 299 | 112 | 2 | 1 | 298 | 1 | 286 | 3.40e-123 | 354 |
| MS.gene58271.t1 | MTR_7g076660 | 58.163 | 294 | 109 | 2 | 6 | 298 | 7 | 287 | 4.64e-122 | 351 |
| MS.gene58271.t1 | MTR_7g076655 | 56.522 | 299 | 116 | 2 | 1 | 298 | 1 | 286 | 2.56e-120 | 347 |
| MS.gene58271.t1 | MTR_8g031910 | 59.197 | 299 | 109 | 4 | 1 | 298 | 1 | 287 | 7.85e-119 | 343 |
| MS.gene58271.t1 | MTR_8g031630 | 55.667 | 300 | 128 | 4 | 1 | 298 | 1 | 297 | 2.89e-114 | 332 |
| MS.gene58271.t1 | MTR_8g031600 | 55.333 | 300 | 130 | 2 | 1 | 298 | 1 | 298 | 1.83e-113 | 330 |
| MS.gene58271.t1 | MTR_8g031610 | 55.932 | 295 | 126 | 3 | 5 | 298 | 3 | 294 | 7.13e-113 | 328 |
| MS.gene58271.t1 | MTR_7g076660 | 57.299 | 274 | 103 | 2 | 26 | 298 | 2 | 262 | 2.18e-111 | 323 |
| MS.gene58271.t1 | MTR_8g031900 | 53.356 | 298 | 134 | 2 | 1 | 298 | 1 | 293 | 1.77e-110 | 322 |
| MS.gene58271.t1 | MTR_8g031650 | 56.357 | 291 | 122 | 4 | 10 | 298 | 104 | 391 | 7.85e-110 | 324 |
| MS.gene58271.t1 | MTR_8g031650 | 57.843 | 102 | 41 | 2 | 170 | 269 | 2 | 103 | 1.18e-35 | 132 |
| MS.gene58271.t1 | MTR_7g076665 | 54.849 | 299 | 130 | 2 | 1 | 298 | 1 | 295 | 2.25e-109 | 319 |
| MS.gene58271.t1 | MTR_5g062280 | 53.846 | 299 | 133 | 3 | 1 | 298 | 1 | 295 | 1.06e-108 | 317 |
| MS.gene58271.t1 | MTR_8g031650 | 56.357 | 291 | 122 | 4 | 10 | 298 | 270 | 557 | 5.36e-108 | 325 |
| MS.gene58271.t1 | MTR_8g031650 | 56.089 | 271 | 115 | 3 | 1 | 269 | 1 | 269 | 1.05e-100 | 306 |
| MS.gene58271.t1 | MTR_3g079320 | 48.161 | 299 | 149 | 3 | 5 | 298 | 9 | 306 | 2.66e-89 | 268 |
| MS.gene58271.t1 | MTR_8g032030 | 74.713 | 174 | 43 | 1 | 1 | 173 | 1 | 174 | 3.52e-86 | 258 |
| MS.gene58271.t1 | MTR_8g031850 | 44.966 | 298 | 121 | 4 | 1 | 298 | 1 | 255 | 1.68e-83 | 252 |
| MS.gene58271.t1 | MTR_7g106800 | 48.148 | 297 | 94 | 4 | 7 | 298 | 9 | 250 | 1.93e-83 | 252 |
| MS.gene58271.t1 | MTR_3g098470 | 40.000 | 305 | 145 | 6 | 4 | 296 | 32 | 310 | 1.03e-68 | 216 |
| MS.gene58271.t1 | MTR_5g083430 | 54.651 | 172 | 78 | 0 | 127 | 298 | 13 | 184 | 1.45e-64 | 201 |
| MS.gene58271.t1 | MTR_1g031180 | 38.361 | 305 | 150 | 6 | 4 | 296 | 37 | 315 | 1.77e-61 | 197 |
| MS.gene58271.t1 | MTR_8g096060 | 36.364 | 308 | 149 | 7 | 4 | 296 | 34 | 309 | 2.32e-55 | 182 |
| MS.gene58271.t1 | MTR_4g087460 | 38.206 | 301 | 145 | 9 | 6 | 290 | 21 | 296 | 1.54e-54 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58271.t1 | AT1G01800 | 57.143 | 294 | 121 | 4 | 7 | 298 | 5 | 295 | 1.20e-114 | 332 |
| MS.gene58271.t1 | AT3G61220 | 55.482 | 301 | 126 | 5 | 1 | 298 | 1 | 296 | 8.24e-114 | 330 |
| MS.gene58271.t1 | AT3G61220 | 56.271 | 295 | 121 | 5 | 7 | 298 | 14 | 303 | 1.11e-112 | 328 |
| MS.gene58271.t1 | AT3G61220 | 56.271 | 295 | 121 | 5 | 7 | 298 | 38 | 327 | 2.42e-112 | 328 |
| MS.gene58271.t1 | AT2G24190 | 53.947 | 304 | 126 | 6 | 1 | 298 | 1 | 296 | 1.82e-109 | 319 |
| MS.gene58271.t1 | AT2G24190 | 54.698 | 298 | 121 | 6 | 7 | 298 | 12 | 301 | 3.37e-108 | 317 |
| MS.gene58271.t1 | AT1G01800 | 53.110 | 209 | 95 | 2 | 90 | 298 | 55 | 260 | 8.43e-74 | 227 |
| MS.gene58271.t1 | AT5G51030 | 38.361 | 305 | 150 | 6 | 4 | 296 | 35 | 313 | 1.87e-66 | 210 |
| MS.gene58271.t1 | AT3G59710 | 39.792 | 289 | 144 | 7 | 6 | 290 | 18 | 280 | 2.47e-62 | 199 |
| MS.gene58271.t1 | AT3G59710 | 39.792 | 289 | 144 | 7 | 6 | 290 | 28 | 290 | 3.60e-62 | 199 |
| MS.gene58271.t1 | AT3G59710 | 39.792 | 289 | 144 | 7 | 6 | 290 | 47 | 309 | 7.58e-62 | 199 |
| MS.gene58271.t1 | AT5G61830 | 38.235 | 306 | 152 | 6 | 4 | 296 | 34 | 315 | 7.06e-60 | 194 |
| MS.gene58271.t1 | AT5G61830 | 38.235 | 306 | 152 | 6 | 4 | 296 | 34 | 315 | 7.06e-60 | 194 |
Find 56 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGGCAAACTTGATATTC+TGG | 0.218733 | 8.4:+64823661 | MS.gene58271:CDS |
| TGTTTGCAAATAAATTATTA+TGG | 0.282681 | 8.4:+64825994 | MS.gene58271:CDS |
| TGTAATTAATGACAAAGATT+TGG | 0.329021 | 8.4:+64825762 | MS.gene58271:CDS |
| AGCATCACCAAAGATTTCTT+TGG | 0.329916 | 8.4:-64826813 | None:intergenic |
| ATCAGACGATGAAAGGAAAA+AGG | 0.341584 | 8.4:+64825939 | MS.gene58271:CDS |
| TTGGTGAATCAGATAACTTT+AGG | 0.350628 | 8.4:-64826050 | None:intergenic |
| ATCCACTACAGGGAAGTTAA+AGG | 0.358802 | 8.4:+64826089 | MS.gene58271:CDS |
| CATCCACTTTCTCTTCAGTT+AGG | 0.365391 | 8.4:-64826841 | None:intergenic |
| ACAGGATCAAACAAAGGAAT+TGG | 0.374893 | 8.4:+64823449 | MS.gene58271:CDS |
| GAATGGACCAAAGAAATCTT+TGG | 0.376524 | 8.4:+64826806 | MS.gene58271:CDS |
| CTTCCCAATGGAAGTGCATC+TGG | 0.387683 | 8.4:+64827112 | MS.gene58271:CDS |
| AGATTTCAAAGAAGGTTCAT+TGG | 0.391106 | 8.4:+64826886 | MS.gene58271:CDS |
| TATGTTATCACAGATATAAC+TGG | 0.419210 | 8.4:+64827031 | MS.gene58271:CDS |
| CTTCAGTCCTATGATAGAAT+TGG | 0.420152 | 8.4:-64827135 | None:intergenic |
| GTTAACAATGCAGGGATTAG+TGG | 0.432718 | 8.4:+64825736 | MS.gene58271:CDS |
| CATCTGGCCAATTCTATCAT+AGG | 0.435865 | 8.4:+64827128 | MS.gene58271:CDS |
| GAATTGGATTTGAGATAGTA+AGG | 0.438309 | 8.4:+64823465 | MS.gene58271:CDS |
| AGCAAAGGCTGGCCTAAAAC+TGG | 0.443573 | 8.4:+64826911 | MS.gene58271:CDS |
| TACCTTTAACTTCCCTGTAG+TGG | 0.446734 | 8.4:-64826091 | None:intergenic |
| ACAGATATAACTGGCAATAC+TGG | 0.452816 | 8.4:+64827040 | MS.gene58271:CDS |
| TTTGAAACACTCAAAGCCTC+TGG | 0.460145 | 8.4:+64823554 | MS.gene58271:CDS |
| TCCAGGATTGCAGTAGTGAC+AGG | 0.461294 | 8.4:+64823431 | MS.gene58271:intron |
| TTGGCCAGATGCACTTCCAT+TGG | 0.462445 | 8.4:-64827116 | None:intergenic |
| GTGAATGTATCATCCACTAC+AGG | 0.468640 | 8.4:+64826078 | MS.gene58271:CDS |
| TGGCCAGATGCACTTCCATT+GGG | 0.478632 | 8.4:-64827115 | None:intergenic |
| GATGATACATTCACAATCCT+TGG | 0.480577 | 8.4:-64826069 | None:intergenic |
| TCAATGCAGGTTAACAATGC+AGG | 0.485830 | 8.4:+64825727 | MS.gene58271:intron |
| GTAAGGCAATTAGCTTCAGC+TGG | 0.490726 | 8.4:+64823482 | MS.gene58271:CDS |
| ATAACATAGTACTAATCAAA+AGG | 0.493573 | 8.4:-64827164 | None:intergenic |
| TAACCTAACTGAAGAGAAAG+TGG | 0.501755 | 8.4:+64826838 | MS.gene58271:CDS |
| ATACTATTGATGCATAAAGT+AGG | 0.503498 | 8.4:-64826998 | None:intergenic |
| AGGCATTATCAGACGATGAA+AGG | 0.506982 | 8.4:+64825932 | MS.gene58271:intron |
| ATTAGCTTCAGCTGGAATCA+AGG | 0.525651 | 8.4:+64823490 | MS.gene58271:CDS |
| TGCATCAATAGTATTTGCCC+TGG | 0.551292 | 8.4:+64827007 | MS.gene58271:CDS |
| CAATGCAGGTTAACAATGCA+GGG | 0.554639 | 8.4:+64825728 | MS.gene58271:intron |
| GCAGCTTTAGACAAGACATA+AGG | 0.557043 | 8.4:-64826938 | None:intergenic |
| ACAGCAAGAGATGAGAAAAG+AGG | 0.563297 | 8.4:+64823521 | MS.gene58271:CDS |
| GTGAATCAGATAACTTTAGG+AGG | 0.565611 | 8.4:-64826047 | None:intergenic |
| TGTATTTCATCAACTAGATG+TGG | 0.570787 | 8.4:+64823592 | MS.gene58271:CDS |
| GGTCTCTTAACTGCTGAAGA+AGG | 0.578507 | 8.4:+64827061 | MS.gene58271:CDS |
| GTTCATTGGAAAGCAAAGGC+TGG | 0.581607 | 8.4:+64826900 | MS.gene58271:CDS |
| AGTGTCTCAAACATATGAGT+TGG | 0.584257 | 8.4:+64825963 | MS.gene58271:CDS |
| AAGCTAGCATTGCTTCCCAA+TGG | 0.591803 | 8.4:+64827100 | MS.gene58271:CDS |
| TGAATCAGATAACTTTAGGA+GGG | 0.593989 | 8.4:-64826046 | None:intergenic |
| AGATGGGACAAACTGCAGAA+AGG | 0.596749 | 8.4:+64823119 | None:intergenic |
| ATATCTGTGATAACATAACC+AGG | 0.599146 | 8.4:-64827025 | None:intergenic |
| GAAGGTTCATTGGAAAGCAA+AGG | 0.604153 | 8.4:+64826896 | MS.gene58271:CDS |
| GAATCAGATAACTTTAGGAG+GGG | 0.624352 | 8.4:-64826045 | None:intergenic |
| TGAATGTATCATCCACTACA+GGG | 0.652351 | 8.4:+64826079 | MS.gene58271:CDS |
| AAAGGCTGGCCTAAAACTGG+TGG | 0.657155 | 8.4:+64826914 | MS.gene58271:CDS |
| TGTGGCTAATGCTGCAAGTG+TGG | 0.661469 | 8.4:+64823610 | MS.gene58271:CDS |
| AACAAAATCAGATAAACCAG+AGG | 0.663643 | 8.4:-64823570 | None:intergenic |
| TAAAGTTATCTGATTCACCA+AGG | 0.666656 | 8.4:+64826052 | MS.gene58271:CDS |
| GTAGTGACAGGATCAAACAA+AGG | 0.701245 | 8.4:+64823443 | MS.gene58271:CDS |
| AGCTTCAGCTGGAATCAAGG+TGG | 0.722149 | 8.4:+64823493 | MS.gene58271:CDS |
| TATCTGTGATAACATAACCA+GGG | 0.729976 | 8.4:-64827024 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAAATATTATAATATT+AGG | - | chr8.4:64825425-64825444 | None:intergenic | 0.0% |
| !! | AATATTAAATGATTACATAA+AGG | + | chr8.4:64824148-64824167 | MS.gene58271:intron | 10.0% |
| !! | CAAAAAAATTTAATTGAATA+AGG | + | chr8.4:64826462-64826481 | MS.gene58271:intron | 10.0% |
| !! | TGGATAATAAAATAAATAAA+AGG | - | chr8.4:64825390-64825409 | None:intergenic | 10.0% |
| !!! | CTTATTCAATTAAATTTTTT+TGG | - | chr8.4:64826464-64826483 | None:intergenic | 10.0% |
| !! | AAAAAAATGATGTAATTGTT+TGG | + | chr8.4:64825883-64825902 | MS.gene58271:intron | 15.0% |
| !! | AAAAAATGATGTAATTGTTT+GGG | + | chr8.4:64825884-64825903 | MS.gene58271:intron | 15.0% |
| !! | CAAAGTTTCATTTAAAAAAA+TGG | - | chr8.4:64823712-64823731 | None:intergenic | 15.0% |
| !! | TGAAATAAATAAAACGATAA+AGG | - | chr8.4:64825249-64825268 | None:intergenic | 15.0% |
| !! | TGTTTGCAAATAAATTATTA+TGG | + | chr8.4:64825994-64826013 | MS.gene58271:CDS | 15.0% |
| !! | TTAATTATAGTTATATGTGA+CGG | - | chr8.4:64825089-64825108 | None:intergenic | 15.0% |
| !! | TTTCATTTAAAAAAATGGAA+AGG | - | chr8.4:64823707-64823726 | None:intergenic | 15.0% |
| !!! | AATCTTTAAAACATCAAATA+AGG | - | chr8.4:64823883-64823902 | None:intergenic | 15.0% |
| !!! | GTTTTATTAGAACTTTATTT+TGG | + | chr8.4:64823819-64823838 | MS.gene58271:intron | 15.0% |
| !!! | TATATTTTTATTTAACTTCC+AGG | + | chr8.4:64825476-64825495 | MS.gene58271:intron | 15.0% |
| !!! | TCAATTAAATTTTTTTGGAT+TGG | - | chr8.4:64826459-64826478 | None:intergenic | 15.0% |
| !!! | TGTAAAAAAGTGTATATTAA+GGG | + | chr8.4:64825845-64825864 | MS.gene58271:intron | 15.0% |
| !!! | TTAATATACACTTTTTTACA+GGG | - | chr8.4:64825845-64825864 | None:intergenic | 15.0% |
| !! | AATAAGTTCCACAATTAAAA+TGG | - | chr8.4:64826694-64826713 | None:intergenic | 20.0% |
| !! | AATTTATTCTTCAATTGTAG+AGG | + | chr8.4:64826327-64826346 | MS.gene58271:intron | 20.0% |
| !! | AGGAATAAAAAAAAGTAACA+TGG | - | chr8.4:64823750-64823769 | None:intergenic | 20.0% |
| !! | ATGTATAAACAACAAAACTA+AGG | - | chr8.4:64823770-64823789 | None:intergenic | 20.0% |
| !! | ATTCTGGTAACATAAAAATT+TGG | + | chr8.4:64823677-64823696 | MS.gene58271:intron | 20.0% |
| !! | TAATGATTTACTTTCTATCT+AGG | - | chr8.4:64826308-64826327 | None:intergenic | 20.0% |
| !! | TGAAATAAATAAAGCAGTAA+AGG | - | chr8.4:64825342-64825361 | None:intergenic | 20.0% |
| !! | TGAAATAAATAAAGCGATAA+AGG | - | chr8.4:64825200-64825219 | None:intergenic | 20.0% |
| !! | TGTAATTAATGACAAAGATT+TGG | + | chr8.4:64825762-64825781 | MS.gene58271:CDS | 20.0% |
| !!! | AAAGTTTTAGAATTCATTCT+TGG | + | chr8.4:64823172-64823191 | MS.gene58271:intron | 20.0% |
| !!! | AATTTTTCCATCAATATCTT+AGG | + | chr8.4:64826279-64826298 | MS.gene58271:intron | 20.0% |
| !!! | ATCCTTTTAAAAATTATTCC+TGG | - | chr8.4:64825497-64825516 | None:intergenic | 20.0% |
| !!! | CTGTAAAAAAGTGTATATTA+AGG | + | chr8.4:64825844-64825863 | MS.gene58271:intron | 20.0% |
| !!! | CTTAATATACACTTTTTTAC+AGG | - | chr8.4:64825846-64825865 | None:intergenic | 20.0% |
| !!! | TATTTTAAATACAAACTCTC+AGG | - | chr8.4:64824699-64824718 | None:intergenic | 20.0% |
| !!! | TCCTGATATATTAATTTGAA+GGG | + | chr8.4:64825647-64825666 | MS.gene58271:intron | 20.0% |
| !!! | TGCTCATAATGTTAATTTTT+TGG | + | chr8.4:64826248-64826267 | MS.gene58271:intron | 20.0% |
| !!! | TTCCAGGAATAATTTTTAAA+AGG | + | chr8.4:64825492-64825511 | MS.gene58271:intron | 20.0% |
| !!! | TTCCTGATATATTAATTTGA+AGG | + | chr8.4:64825646-64825665 | MS.gene58271:intron | 20.0% |
| !!! | TTTTATAGTCTCTTAGTATT+TGG | + | chr8.4:64826723-64826742 | MS.gene58271:intron | 20.0% |
| !!! | TTTTTAGAAGATTTCAAAGA+AGG | + | chr8.4:64826878-64826897 | MS.gene58271:CDS | 20.0% |
| ! | AATAATTATCCAGAACTTTC+TGG | + | chr8.4:64825173-64825192 | MS.gene58271:intron | 25.0% |
| ! | ACTTTGTTCTTCTTTCTTTA+AGG | - | chr8.4:64824209-64824228 | None:intergenic | 25.0% |
| ! | AGAAAAAAAAATATCTCACG+TGG | - | chr8.4:64824749-64824768 | None:intergenic | 25.0% |
| ! | AGATCTAGTTACAATTTGTA+TGG | - | chr8.4:64824805-64824824 | None:intergenic | 25.0% |
| ! | ATAAATACAAGCATATAGCA+AGG | + | chr8.4:64824538-64824557 | MS.gene58271:intron | 25.0% |
| ! | ATACTATTGATGCATAAAGT+AGG | - | chr8.4:64827001-64827020 | None:intergenic | 25.0% |
| ! | ATATATGCTCAAGAAAATCT+TGG | - | chr8.4:64825461-64825480 | None:intergenic | 25.0% |
| ! | ATGTTCTTAACATAAGAAGA+AGG | + | chr8.4:64823974-64823993 | MS.gene58271:intron | 25.0% |
| ! | CATTGCATTCAAAAATGAAT+TGG | + | chr8.4:64824172-64824191 | MS.gene58271:intron | 25.0% |
| ! | CATTTAAAAAAATGGAAAGG+AGG | - | chr8.4:64823704-64823723 | None:intergenic | 25.0% |
| ! | CTAGTGTTAATCAATTCTTA+AGG | + | chr8.4:64826128-64826147 | MS.gene58271:intron | 25.0% |
| ! | CTATATGCTTGTATTTATAG+AGG | - | chr8.4:64824536-64824555 | None:intergenic | 25.0% |
| ! | CTGAAATAAATAAGCAGTAA+AGG | - | chr8.4:64825296-64825315 | None:intergenic | 25.0% |
| ! | CTTAAGAATTGATTAACACT+AGG | - | chr8.4:64826130-64826149 | None:intergenic | 25.0% |
| ! | TATGTTATCACAGATATAAC+TGG | + | chr8.4:64827031-64827050 | MS.gene58271:CDS | 25.0% |
| ! | TCCAGAGAATAAAAAATGAA+TGG | + | chr8.4:64826789-64826808 | MS.gene58271:intron | 25.0% |
| ! | TCCCTTCAAATTAATATATC+AGG | - | chr8.4:64825651-64825670 | None:intergenic | 25.0% |
| ! | TGAAACTACAAATATGGATA+AGG | + | chr8.4:64824267-64824286 | MS.gene58271:intron | 25.0% |
| ! | TTAGAATTCATTCTTGGTAA+TGG | + | chr8.4:64823178-64823197 | MS.gene58271:intron | 25.0% |
| !! | AAGAATGCAAGATTTCATTT+TGG | - | chr8.4:64826229-64826248 | None:intergenic | 25.0% |
| !! | GATTTTGTCAAATCTCAATT+TGG | + | chr8.4:64823644-64823663 | MS.gene58271:CDS | 25.0% |
| !! | TAAGAAAATTTGTTCAATGC+AGG | + | chr8.4:64825714-64825733 | MS.gene58271:intron | 25.0% |
| !! | TATATATAACCAGAGTTTTC+TGG | + | chr8.4:64825222-64825241 | MS.gene58271:intron | 25.0% |
| !!! | AAGGTATTTTGTCAATTTGA+AGG | + | chr8.4:64826481-64826500 | MS.gene58271:intron | 25.0% |
| !!! | AGTTCTGGATAATTATTAAG+AGG | - | chr8.4:64825170-64825189 | None:intergenic | 25.0% |
| !!! | CAATTCATTTTTGAATGCAA+TGG | - | chr8.4:64824174-64824193 | None:intergenic | 25.0% |
| !!! | GTATTTAATTTGACCTTTTC+AGG | + | chr8.4:64825912-64825931 | MS.gene58271:intron | 25.0% |
| !!! | TCCATTCATTTTTTATTCTC+TGG | - | chr8.4:64826793-64826812 | None:intergenic | 25.0% |
| !!! | TGGCTTTAACTTATTGAATA+AGG | + | chr8.4:64826743-64826762 | MS.gene58271:intron | 25.0% |
| AACAAAATCAGATAAACCAG+AGG | - | chr8.4:64823573-64823592 | None:intergenic | 30.0% | |
| AACTAGATCTCAAGTCTATT+AGG | + | chr8.4:64824815-64824834 | MS.gene58271:intron | 30.0% | |
| AAGTTCCACAATTAAAATGG+TGG | - | chr8.4:64826691-64826710 | None:intergenic | 30.0% | |
| AGATTTCAAAGAAGGTTCAT+TGG | + | chr8.4:64826886-64826905 | MS.gene58271:CDS | 30.0% | |
| AGGAAAACACCTATAGTTTA+TGG | - | chr8.4:64825822-64825841 | None:intergenic | 30.0% | |
| AGTAAGTGTCCATAAACTAT+AGG | + | chr8.4:64825810-64825829 | MS.gene58271:intron | 30.0% | |
| ATAAAAGGACTAGAAAGTTC+TGG | - | chr8.4:64825375-64825394 | None:intergenic | 30.0% | |
| ATATCTGTGATAACATAACC+AGG | - | chr8.4:64827028-64827047 | None:intergenic | 30.0% | |
| ATCAAGCAAAAGGACATAAT+TGG | + | chr8.4:64824040-64824059 | MS.gene58271:intron | 30.0% | |
| ATTCTTCAATTGTAGAGGAA+TGG | + | chr8.4:64826332-64826351 | MS.gene58271:intron | 30.0% | |
| ATTTGGCAAACTTGATATTC+TGG | + | chr8.4:64823661-64823680 | MS.gene58271:CDS | 30.0% | |
| CTGGATAATTATTAAGAGGT+AGG | - | chr8.4:64825166-64825185 | None:intergenic | 30.0% | |
| GTCTTTACTATGTATTGTTG+AGG | + | chr8.4:64823850-64823869 | MS.gene58271:intron | 30.0% | |
| TAAAGTTATCTGATTCACCA+AGG | + | chr8.4:64826052-64826071 | MS.gene58271:CDS | 30.0% | |
| TAATGTCACTAGAACAAAGT+AGG | + | chr8.4:64826164-64826183 | MS.gene58271:intron | 30.0% | |
| TAGGTTACCTAAGATATTGA+TGG | - | chr8.4:64826289-64826308 | None:intergenic | 30.0% | |
| TATCAAAGCAATCAAGCAAA+AGG | + | chr8.4:64824030-64824049 | MS.gene58271:intron | 30.0% | |
| TATCTGTGATAACATAACCA+GGG | - | chr8.4:64827027-64827046 | None:intergenic | 30.0% | |
| TCTAGTTACAATTTGTATGG+TGG | - | chr8.4:64824802-64824821 | None:intergenic | 30.0% | |
| TGTATTTCATCAACTAGATG+TGG | + | chr8.4:64823592-64823611 | MS.gene58271:CDS | 30.0% | |
| TTAGGCTTAATAGTTTGAGA+TGG | + | chr8.4:64824833-64824852 | MS.gene58271:intron | 30.0% | |
| TTCTCTCATCTCTTAATTTC+TGG | + | chr8.4:64825063-64825082 | MS.gene58271:intron | 30.0% | |
| TTCTGGTGAAACTACAAATA+TGG | + | chr8.4:64824261-64824280 | MS.gene58271:intron | 30.0% | |
| TTGGTGAATCAGATAACTTT+AGG | - | chr8.4:64826053-64826072 | None:intergenic | 30.0% | |
| TTTGCACTTACTTTATCAAC+CGG | + | chr8.4:64826594-64826613 | MS.gene58271:intron | 30.0% | |
| TTTGCTTGATTGCTTTGATA+AGG | - | chr8.4:64824030-64824049 | None:intergenic | 30.0% | |
| ! | AAGGACATAATTGGACTTTT+TGG | + | chr8.4:64824049-64824068 | MS.gene58271:intron | 30.0% |
| ! | GAATTGGATTTGAGATAGTA+AGG | + | chr8.4:64823465-64823484 | MS.gene58271:CDS | 30.0% |
| ! | GTTAATTATCCAGAGTTTTC+TGG | + | chr8.4:64825269-64825288 | MS.gene58271:intron | 30.0% |
| ! | GTTATATATCCAGAGTTTTC+TGG | + | chr8.4:64825315-64825334 | MS.gene58271:intron | 30.0% |
| ! | TGAATCAGATAACTTTAGGA+GGG | - | chr8.4:64826049-64826068 | None:intergenic | 30.0% |
| ! | TTTTATTATCCAGAGTTCTC+TGG | + | chr8.4:64825398-64825417 | MS.gene58271:intron | 30.0% |
| !! | GTTGATAATACAGAGTGTAA+CGG | + | chr8.4:64824897-64824916 | MS.gene58271:intron | 30.0% |
| !!! | ATATACACTTTTTTACAGGG+AGG | - | chr8.4:64825842-64825861 | None:intergenic | 30.0% |
| !!! | TAGAACCACCATTTTAATTG+TGG | + | chr8.4:64826683-64826702 | MS.gene58271:intron | 30.0% |
| AATAAACGTCACAAGAAAGG+GGG | - | chr8.4:64825532-64825551 | None:intergenic | 35.0% | |
| ACAGATATAACTGGCAATAC+TGG | + | chr8.4:64827040-64827059 | MS.gene58271:CDS | 35.0% | |
| ACAGGATCAAACAAAGGAAT+TGG | + | chr8.4:64823449-64823468 | MS.gene58271:CDS | 35.0% | |
| AGAACACAAGAGATTTATCC+TGG | - | chr8.4:64825038-64825057 | None:intergenic | 35.0% | |
| AGCAATAAACGTCACAAGAA+AGG | - | chr8.4:64825535-64825554 | None:intergenic | 35.0% | |
| AGCATCACCAAAGATTTCTT+TGG | - | chr8.4:64826816-64826835 | None:intergenic | 35.0% | |
| AGTGTCTCAAACATATGAGT+TGG | + | chr8.4:64825963-64825982 | MS.gene58271:CDS | 35.0% | |
| AGTTACAATTTGTATGGTGG+TGG | - | chr8.4:64824799-64824818 | None:intergenic | 35.0% | |
| AGTTTATGGACACTTACTCT+AGG | - | chr8.4:64825808-64825827 | None:intergenic | 35.0% | |
| ATCAGACGATGAAAGGAAAA+AGG | + | chr8.4:64825939-64825958 | MS.gene58271:CDS | 35.0% | |
| ATTCAGAAGTTTCTGATAGC+AGG | + | chr8.4:64824953-64824972 | MS.gene58271:intron | 35.0% | |
| CAATAAACGTCACAAGAAAG+GGG | - | chr8.4:64825533-64825552 | None:intergenic | 35.0% | |
| CTCACCAAAAGAAGATACTT+GGG | + | chr8.4:64824104-64824123 | MS.gene58271:intron | 35.0% | |
| CTTCAGTCCTATGATAGAAT+TGG | - | chr8.4:64827138-64827157 | None:intergenic | 35.0% | |
| CTTGGGATACATGACATAAA+TGG | + | chr8.4:64824121-64824140 | MS.gene58271:intron | 35.0% | |
| GAATGGACCAAAGAAATCTT+TGG | + | chr8.4:64826806-64826825 | MS.gene58271:CDS | 35.0% | |
| GAATGTTCTTGAGAACATTC+TGG | + | chr8.4:64824244-64824263 | MS.gene58271:intron | 35.0% | |
| GATGATACATTCACAATCCT+TGG | - | chr8.4:64826072-64826091 | None:intergenic | 35.0% | |
| GCAATAAACGTCACAAGAAA+GGG | - | chr8.4:64825534-64825553 | None:intergenic | 35.0% | |
| GTGAATCAGATAACTTTAGG+AGG | - | chr8.4:64826050-64826069 | None:intergenic | 35.0% | |
| GTGTTACAGTGATGACATAA+CGG | - | chr8.4:64826627-64826646 | None:intergenic | 35.0% | |
| GTTACAATTTGTATGGTGGT+GGG | - | chr8.4:64824798-64824817 | None:intergenic | 35.0% | |
| GTTTATGGACACTTACTCTA+GGG | - | chr8.4:64825807-64825826 | None:intergenic | 35.0% | |
| TAACCTAACTGAAGAGAAAG+TGG | + | chr8.4:64826838-64826857 | MS.gene58271:CDS | 35.0% | |
| TATTCACGTGAATGAGAGAA+TGG | - | chr8.4:64824595-64824614 | None:intergenic | 35.0% | |
| TCTCACCAAAAGAAGATACT+TGG | + | chr8.4:64824103-64824122 | MS.gene58271:intron | 35.0% | |
| TCTTCAGAACATTCTTCACT+TGG | + | chr8.4:64824384-64824403 | MS.gene58271:intron | 35.0% | |
| TGAATGTATCATCCACTACA+GGG | + | chr8.4:64826079-64826098 | MS.gene58271:CDS | 35.0% | |
| ! | AACAAAAAGCAAGAGCACAT+GGG | + | chr8.4:64824442-64824461 | MS.gene58271:intron | 35.0% |
| ! | AACTTGGAATGTCTTTTGCT+TGG | + | chr8.4:64826191-64826210 | MS.gene58271:intron | 35.0% |
| ! | ACTTGGAATGTCTTTTGCTT+GGG | + | chr8.4:64826192-64826211 | MS.gene58271:intron | 35.0% |
| ! | GAATCAGATAACTTTAGGAG+GGG | - | chr8.4:64826048-64826067 | None:intergenic | 35.0% |
| ! | GTATCCCAAGTATCTTCTTT+TGG | - | chr8.4:64824111-64824130 | None:intergenic | 35.0% |
| !! | ATTAATTTTCCAGAGTGCTC+TGG | + | chr8.4:64825113-64825132 | MS.gene58271:intron | 35.0% |
| !! | GTCAATATTCTAAAACCACG+CGG | + | chr8.4:64823396-64823415 | MS.gene58271:intron | 35.0% |
| !! | TCAATATTCTAAAACCACGC+GGG | + | chr8.4:64823397-64823416 | MS.gene58271:intron | 35.0% |
| ACAGCAAGAGATGAGAAAAG+AGG | + | chr8.4:64823521-64823540 | MS.gene58271:CDS | 40.0% | |
| AGCTGTGCATGAGTTGTAAT+TGG | - | chr8.4:64824313-64824332 | None:intergenic | 40.0% | |
| AGGCATTATCAGACGATGAA+AGG | + | chr8.4:64825932-64825951 | MS.gene58271:intron | 40.0% | |
| AGTAAAGGACCAGAAAACTC+TGG | - | chr8.4:64825281-64825300 | None:intergenic | 40.0% | |
| ATAAACGTCACAAGAAAGGG+GGG | - | chr8.4:64825531-64825550 | None:intergenic | 40.0% | |
| ATAATCTCACACGTAGTGTG+GGG | + | chr8.4:64824988-64825007 | MS.gene58271:intron | 40.0% | |
| ATATTAGGACCAGAGAACTC+TGG | - | chr8.4:64825410-64825429 | None:intergenic | 40.0% | |
| ATCCACTACAGGGAAGTTAA+AGG | + | chr8.4:64826089-64826108 | MS.gene58271:CDS | 40.0% | |
| CAATGCAGGTTAACAATGCA+GGG | + | chr8.4:64825728-64825747 | MS.gene58271:intron | 40.0% | |
| CATCCACTTTCTCTTCAGTT+AGG | - | chr8.4:64826844-64826863 | None:intergenic | 40.0% | |
| CATCTGGCCAATTCTATCAT+AGG | + | chr8.4:64827128-64827147 | MS.gene58271:CDS | 40.0% | |
| CTGATAGCAGGATACTATAG+TGG | + | chr8.4:64824965-64824984 | MS.gene58271:intron | 40.0% | |
| GAACAAAGTAGGAGCAAACT+TGG | + | chr8.4:64826175-64826194 | MS.gene58271:intron | 40.0% | |
| GAAGGTTCATTGGAAAGCAA+AGG | + | chr8.4:64826896-64826915 | MS.gene58271:CDS | 40.0% | |
| GATAAAGGACCAGAAAACTC+TGG | - | chr8.4:64825234-64825253 | None:intergenic | 40.0% | |
| GATAAAGGACCAGAAAGTTC+TGG | - | chr8.4:64825185-64825204 | None:intergenic | 40.0% | |
| GATAATCTCACACGTAGTGT+GGG | + | chr8.4:64824987-64825006 | MS.gene58271:intron | 40.0% | |
| GTAGTGACAGGATCAAACAA+AGG | + | chr8.4:64823443-64823462 | MS.gene58271:CDS | 40.0% | |
| GTGAATGTATCATCCACTAC+AGG | + | chr8.4:64826078-64826097 | MS.gene58271:CDS | 40.0% | |
| GTTAACAATGCAGGGATTAG+TGG | + | chr8.4:64825736-64825755 | MS.gene58271:CDS | 40.0% | |
| TCAATGCAGGTTAACAATGC+AGG | + | chr8.4:64825727-64825746 | MS.gene58271:intron | 40.0% | |
| TCTCAATTGTGATCGCATTG+CGG | + | chr8.4:64823264-64823283 | MS.gene58271:intron | 40.0% | |
| TCTGTATTATCAACCTCAGC+AGG | - | chr8.4:64824891-64824910 | None:intergenic | 40.0% | |
| TGCATCAATAGTATTTGCCC+TGG | + | chr8.4:64827007-64827026 | MS.gene58271:CDS | 40.0% | |
| ! | ACATAAGGACCACCAGTTTT+AGG | - | chr8.4:64826926-64826945 | None:intergenic | 40.0% |
| ! | ATGACATAACGGCTTTTGAC+CGG | - | chr8.4:64826616-64826635 | None:intergenic | 40.0% |
| ! | ATTAGCTTCAGCTGGAATCA+AGG | + | chr8.4:64823490-64823509 | MS.gene58271:CDS | 40.0% |
| ! | CAACAAAAAGCAAGAGCACA+TGG | + | chr8.4:64824441-64824460 | MS.gene58271:intron | 40.0% |
| ! | TACCTTTAACTTCCCTGTAG+TGG | - | chr8.4:64826094-64826113 | None:intergenic | 40.0% |
| ! | TCGTCTGATAATGCCTGAAA+AGG | - | chr8.4:64825928-64825947 | None:intergenic | 40.0% |
| ! | TTTGAAACACTCAAAGCCTC+TGG | + | chr8.4:64823554-64823573 | MS.gene58271:CDS | 40.0% |
| !! | ACTGAAGTGTCTTCCTTTTG+AGG | + | chr8.4:64827151-64827170 | MS.gene58271:CDS | 40.0% |
| !! | GCAGCTTTAGACAAGACATA+AGG | - | chr8.4:64826941-64826960 | None:intergenic | 40.0% |
| AGAATAGTAGAAGCCTGCTG+AGG | + | chr8.4:64824875-64824894 | MS.gene58271:intron | 45.0% | |
| AGCTGTATTACAACCTCACG+TGG | + | chr8.4:64824329-64824348 | MS.gene58271:intron | 45.0% | |
| GCTGTATTACAACCTCACGT+GGG | + | chr8.4:64824330-64824349 | MS.gene58271:intron | 45.0% | |
| GGATAATCTCACACGTAGTG+TGG | + | chr8.4:64824986-64825005 | MS.gene58271:intron | 45.0% | |
| GGTCTCTTAACTGCTGAAGA+AGG | + | chr8.4:64827061-64827080 | MS.gene58271:CDS | 45.0% | |
| GTTCATTGGAAAGCAAAGGC+TGG | + | chr8.4:64826900-64826919 | MS.gene58271:CDS | 45.0% | |
| ! | GTAAGGCAATTAGCTTCAGC+TGG | + | chr8.4:64823482-64823501 | MS.gene58271:CDS | 45.0% |
| ! | TTTATCCTGGTTCGCCTAAC+CGG | - | chr8.4:64825025-64825044 | None:intergenic | 45.0% |
| !! | ATTTGTATGGTGGTGGGTGT+TGG | - | chr8.4:64824792-64824811 | None:intergenic | 45.0% |
| !! | CAGAGTGTAACGGATTGATC+TGG | + | chr8.4:64824907-64824926 | MS.gene58271:intron | 45.0% |
| !! | GTGGTGGGTGTTGGTAAAAA+TGG | - | chr8.4:64824783-64824802 | None:intergenic | 45.0% |
| !! | TTTTAAGGACCAGAGCACTC+TGG | - | chr8.4:64825125-64825144 | None:intergenic | 45.0% |
| !!! | ATTATTTAATTTTAGTTTTA+AGG | - | chr8.4:64825140-64825159 | None:intergenic | 5.0% |
| AGCTTCAGCTGGAATCAAGG+TGG | + | chr8.4:64823493-64823512 | MS.gene58271:CDS | 50.0% | |
| TCCAGGATTGCAGTAGTGAC+AGG | + | chr8.4:64823431-64823450 | MS.gene58271:intron | 50.0% | |
| TCCTGTCACTACTGCAATCC+TGG | - | chr8.4:64823435-64823454 | None:intergenic | 50.0% | |
| TGTGGCTAATGCTGCAAGTG+TGG | + | chr8.4:64823610-64823629 | MS.gene58271:CDS | 50.0% | |
| !! | AAAGGCTGGCCTAAAACTGG+TGG | + | chr8.4:64826914-64826933 | MS.gene58271:CDS | 50.0% |
| !! | AGCAAAGGCTGGCCTAAAAC+TGG | + | chr8.4:64826911-64826930 | MS.gene58271:CDS | 50.0% |
| CTCACACGTAGTGTGGGGAT+TGG | + | chr8.4:64824993-64825012 | MS.gene58271:intron | 55.0% | |
| GGAAACAAACACAACCCGCG+TGG | - | chr8.4:64823414-64823433 | None:intergenic | 55.0% | |
| ! | CATTTGAGACAGCCCACGTG+AGG | - | chr8.4:64824345-64824364 | None:intergenic | 55.0% |
| ! | CGCGGGTTGTGTTTGTTTCC+AGG | + | chr8.4:64823414-64823433 | MS.gene58271:intron | 55.0% |
| ! | CTCACGTGGGCTGTCTCAAA+TGG | + | chr8.4:64824343-64824362 | MS.gene58271:intron | 55.0% |
| ! | GTGGGCTGTCTCAAATGGCT+AGG | + | chr8.4:64824348-64824367 | MS.gene58271:intron | 55.0% |
| GGGATTGGACGTAGCCGGTT+AGG | + | chr8.4:64825008-64825027 | MS.gene58271:intron | 60.0% | |
| GTGTGGGGATTGGACGTAGC+CGG | + | chr8.4:64825003-64825022 | MS.gene58271:intron | 60.0% | |
| CGTAGCCGGTTAGGCGAACC+AGG | + | chr8.4:64825017-64825036 | MS.gene58271:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 64823121 | 64827171 | 64823121 | ID=MS.gene58271 |
| chr8.4 | mRNA | 64823121 | 64827171 | 64823121 | ID=MS.gene58271.t1;Parent=MS.gene58271 |
| chr8.4 | exon | 64823121 | 64823140 | 64823121 | ID=MS.gene58271.t1.exon1;Parent=MS.gene58271.t1 |
| chr8.4 | CDS | 64823121 | 64823140 | 64823121 | ID=cds.MS.gene58271.t1;Parent=MS.gene58271.t1 |
| chr8.4 | exon | 64823436 | 64823682 | 64823436 | ID=MS.gene58271.t1.exon2;Parent=MS.gene58271.t1 |
| chr8.4 | CDS | 64823436 | 64823682 | 64823436 | ID=cds.MS.gene58271.t1;Parent=MS.gene58271.t1 |
| chr8.4 | exon | 64825736 | 64825810 | 64825736 | ID=MS.gene58271.t1.exon3;Parent=MS.gene58271.t1 |
| chr8.4 | CDS | 64825736 | 64825810 | 64825736 | ID=cds.MS.gene58271.t1;Parent=MS.gene58271.t1 |
| chr8.4 | exon | 64825934 | 64826110 | 64825934 | ID=MS.gene58271.t1.exon4;Parent=MS.gene58271.t1 |
| chr8.4 | CDS | 64825934 | 64826110 | 64825934 | ID=cds.MS.gene58271.t1;Parent=MS.gene58271.t1 |
| chr8.4 | exon | 64826794 | 64827171 | 64826794 | ID=MS.gene58271.t1.exon5;Parent=MS.gene58271.t1 |
| chr8.4 | CDS | 64826794 | 64827171 | 64826794 | ID=cds.MS.gene58271.t1;Parent=MS.gene58271.t1 |
| Gene Sequence |
| Protein sequence |
