Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019532.t1 | QCE02779.1 | 68.1 | 590 | 163 | 4 | 1 | 567 | 282 | 869 | 1.50E-222 | 782.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019532.t1 | Q9M2E2 | 59.0 | 295 | 113 | 5 | 276 | 567 | 7 | 296 | 2.0e-90 | 334.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019532.t1 | A0A4D6MRN2 | 68.1 | 590 | 163 | 4 | 1 | 567 | 282 | 869 | 1.1e-222 | 782.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019532.t1 | MTR_8g031650 | 56.392 | 571 | 231 | 8 | 1 | 567 | 1 | 557 | 0.0 | 617 |
MS.gene019532.t1 | MTR_8g031990 | 89.726 | 292 | 30 | 0 | 276 | 567 | 7 | 298 | 0.0 | 543 |
MS.gene019532.t1 | MTR_8g031990 | 82.550 | 298 | 51 | 1 | 1 | 298 | 1 | 297 | 5.60e-176 | 499 |
MS.gene019532.t1 | MTR_8g032010 | 88.699 | 292 | 33 | 0 | 276 | 567 | 7 | 298 | 0.0 | 540 |
MS.gene019532.t1 | MTR_8g032010 | 80.556 | 288 | 55 | 1 | 1 | 287 | 1 | 288 | 2.26e-169 | 482 |
MS.gene019532.t1 | MTR_8g032000 | 90.000 | 280 | 28 | 0 | 1 | 280 | 1 | 280 | 0.0 | 524 |
MS.gene019532.t1 | MTR_8g032000 | 83.904 | 292 | 47 | 0 | 276 | 567 | 7 | 298 | 9.98e-180 | 508 |
MS.gene019532.t1 | MTR_8g032020 | 85.473 | 296 | 42 | 1 | 273 | 567 | 5 | 300 | 0.0 | 513 |
MS.gene019532.t1 | MTR_8g032020 | 84.375 | 288 | 43 | 2 | 2 | 287 | 3 | 290 | 1.13e-171 | 488 |
MS.gene019532.t1 | MTR_8g031650 | 56.079 | 403 | 161 | 7 | 169 | 567 | 1 | 391 | 3.23e-151 | 439 |
MS.gene019532.t1 | MTR_8g031650 | 55.197 | 279 | 121 | 3 | 10 | 286 | 104 | 380 | 2.03e-98 | 304 |
MS.gene019532.t1 | MTR_8g031980 | 71.918 | 292 | 82 | 0 | 276 | 567 | 7 | 298 | 4.61e-150 | 433 |
MS.gene019532.t1 | MTR_8g031980 | 68.929 | 280 | 87 | 0 | 1 | 280 | 1 | 280 | 1.28e-138 | 404 |
MS.gene019532.t1 | MTR_8g031960 | 71.821 | 291 | 82 | 0 | 276 | 566 | 8 | 298 | 2.46e-148 | 429 |
MS.gene019532.t1 | MTR_8g031960 | 68.248 | 274 | 87 | 0 | 7 | 280 | 8 | 281 | 3.51e-134 | 393 |
MS.gene019532.t1 | MTR_8g031940 | 68.259 | 293 | 92 | 1 | 276 | 567 | 7 | 299 | 3.44e-139 | 405 |
MS.gene019532.t1 | MTR_8g031940 | 65.398 | 289 | 98 | 2 | 1 | 287 | 1 | 289 | 2.73e-132 | 388 |
MS.gene019532.t1 | MTR_7g076660 | 58.703 | 293 | 109 | 2 | 275 | 567 | 6 | 286 | 1.25e-118 | 352 |
MS.gene019532.t1 | MTR_7g076660 | 55.442 | 294 | 118 | 3 | 1 | 294 | 1 | 281 | 2.25e-108 | 326 |
MS.gene019532.t1 | MTR_7g076660 | 58.562 | 292 | 109 | 2 | 276 | 567 | 8 | 287 | 8.33e-118 | 350 |
MS.gene019532.t1 | MTR_7g076660 | 55.556 | 288 | 115 | 3 | 7 | 294 | 8 | 282 | 5.52e-107 | 323 |
MS.gene019532.t1 | MTR_7g076655 | 58.020 | 293 | 111 | 2 | 275 | 567 | 6 | 286 | 1.30e-117 | 350 |
MS.gene019532.t1 | MTR_7g076655 | 55.442 | 294 | 118 | 3 | 1 | 294 | 1 | 281 | 8.33e-109 | 327 |
MS.gene019532.t1 | MTR_8g031910 | 58.362 | 293 | 109 | 3 | 276 | 567 | 7 | 287 | 4.07e-116 | 346 |
MS.gene019532.t1 | MTR_8g031910 | 55.593 | 295 | 117 | 4 | 1 | 294 | 1 | 282 | 3.70e-106 | 320 |
MS.gene019532.t1 | MTR_8g031900 | 56.164 | 292 | 123 | 2 | 276 | 567 | 7 | 293 | 3.40e-115 | 344 |
MS.gene019532.t1 | MTR_8g031900 | 54.643 | 280 | 122 | 2 | 1 | 280 | 1 | 275 | 3.40e-104 | 316 |
MS.gene019532.t1 | MTR_7g076665 | 57.483 | 294 | 120 | 3 | 275 | 567 | 6 | 295 | 1.24e-112 | 337 |
MS.gene019532.t1 | MTR_7g076665 | 56.071 | 280 | 118 | 3 | 1 | 279 | 1 | 276 | 2.38e-101 | 308 |
MS.gene019532.t1 | MTR_8g031630 | 57.483 | 294 | 120 | 4 | 276 | 567 | 7 | 297 | 8.37e-108 | 325 |
MS.gene019532.t1 | MTR_8g031630 | 55.903 | 288 | 123 | 3 | 1 | 286 | 1 | 286 | 2.11e-105 | 319 |
MS.gene019532.t1 | MTR_7g076660 | 57.875 | 273 | 103 | 2 | 295 | 567 | 2 | 262 | 1.33e-107 | 323 |
MS.gene019532.t1 | MTR_7g076660 | 54.275 | 269 | 110 | 3 | 26 | 294 | 2 | 257 | 3.48e-96 | 294 |
MS.gene019532.t1 | MTR_8g031600 | 57.679 | 293 | 120 | 2 | 277 | 567 | 8 | 298 | 1.62e-107 | 324 |
MS.gene019532.t1 | MTR_8g031600 | 54.965 | 282 | 123 | 2 | 1 | 280 | 1 | 280 | 3.83e-99 | 303 |
MS.gene019532.t1 | MTR_8g031610 | 56.849 | 292 | 122 | 3 | 277 | 567 | 6 | 294 | 3.62e-107 | 323 |
MS.gene019532.t1 | MTR_8g031610 | 54.643 | 280 | 124 | 2 | 8 | 286 | 6 | 283 | 3.19e-101 | 308 |
MS.gene019532.t1 | MTR_5g062280 | 52.740 | 292 | 135 | 2 | 276 | 567 | 7 | 295 | 2.54e-99 | 303 |
MS.gene019532.t1 | MTR_5g062280 | 50.523 | 287 | 140 | 1 | 1 | 287 | 1 | 285 | 2.88e-95 | 293 |
MS.gene019532.t1 | MTR_8g032030 | 85.119 | 168 | 24 | 1 | 276 | 442 | 7 | 174 | 1.48e-93 | 286 |
MS.gene019532.t1 | MTR_8g032030 | 82.759 | 174 | 29 | 1 | 1 | 173 | 1 | 174 | 1.57e-92 | 283 |
MS.gene019532.t1 | MTR_3g079320 | 48.148 | 297 | 148 | 3 | 276 | 567 | 11 | 306 | 6.53e-88 | 274 |
MS.gene019532.t1 | MTR_3g079320 | 48.929 | 280 | 137 | 3 | 6 | 280 | 10 | 288 | 1.12e-83 | 263 |
MS.gene019532.t1 | MTR_8g031850 | 47.603 | 292 | 110 | 3 | 276 | 567 | 7 | 255 | 5.05e-87 | 270 |
MS.gene019532.t1 | MTR_8g031850 | 45.714 | 280 | 109 | 3 | 1 | 280 | 1 | 237 | 5.20e-77 | 244 |
MS.gene019532.t1 | MTR_7g106800 | 49.158 | 297 | 91 | 4 | 276 | 567 | 9 | 250 | 3.70e-81 | 255 |
MS.gene019532.t1 | MTR_7g106800 | 45.161 | 279 | 93 | 3 | 7 | 280 | 9 | 232 | 2.83e-69 | 224 |
MS.gene019532.t1 | MTR_3g098470 | 40.864 | 301 | 141 | 6 | 278 | 567 | 37 | 311 | 4.58e-66 | 218 |
MS.gene019532.t1 | MTR_3g098470 | 40.636 | 283 | 131 | 5 | 9 | 280 | 37 | 293 | 1.72e-59 | 200 |
MS.gene019532.t1 | MTR_5g083430 | 54.651 | 172 | 78 | 0 | 396 | 567 | 13 | 184 | 5.93e-66 | 213 |
MS.gene019532.t1 | MTR_5g083430 | 54.839 | 155 | 70 | 0 | 127 | 281 | 13 | 167 | 3.01e-58 | 192 |
MS.gene019532.t1 | MTR_1g031180 | 37.542 | 301 | 151 | 6 | 278 | 567 | 42 | 316 | 4.62e-56 | 191 |
MS.gene019532.t1 | MTR_1g031180 | 36.396 | 283 | 143 | 5 | 9 | 280 | 42 | 298 | 7.67e-52 | 180 |
MS.gene019532.t1 | MTR_8g096060 | 36.877 | 301 | 150 | 6 | 278 | 567 | 39 | 310 | 1.53e-53 | 184 |
MS.gene019532.t1 | MTR_8g096060 | 35.336 | 283 | 143 | 6 | 9 | 280 | 39 | 292 | 2.70e-47 | 167 |
MS.gene019532.t1 | MTR_4g087460 | 36.928 | 306 | 152 | 8 | 278 | 567 | 24 | 304 | 7.78e-51 | 177 |
MS.gene019532.t1 | MTR_4g087460 | 37.276 | 279 | 135 | 7 | 9 | 272 | 24 | 277 | 3.06e-47 | 167 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019532.t1 | AT3G61220 | 58.983 | 295 | 113 | 5 | 276 | 567 | 7 | 296 | 7.97e-118 | 351 |
MS.gene019532.t1 | AT3G61220 | 58.511 | 282 | 110 | 4 | 1 | 280 | 1 | 277 | 1.11e-111 | 335 |
MS.gene019532.t1 | AT3G61220 | 58.983 | 295 | 113 | 5 | 276 | 567 | 14 | 303 | 1.90e-117 | 350 |
MS.gene019532.t1 | AT3G61220 | 58.696 | 276 | 107 | 4 | 7 | 280 | 14 | 284 | 2.06e-109 | 330 |
MS.gene019532.t1 | AT3G61220 | 58.983 | 295 | 113 | 5 | 276 | 567 | 38 | 327 | 5.52e-117 | 350 |
MS.gene019532.t1 | AT3G61220 | 58.696 | 276 | 107 | 4 | 7 | 280 | 38 | 308 | 3.67e-109 | 330 |
MS.gene019532.t1 | AT1G01800 | 55.705 | 298 | 126 | 5 | 272 | 567 | 2 | 295 | 3.09e-112 | 337 |
MS.gene019532.t1 | AT1G01800 | 53.546 | 282 | 124 | 5 | 1 | 280 | 1 | 277 | 7.58e-101 | 307 |
MS.gene019532.t1 | AT2G24190 | 55.593 | 295 | 123 | 5 | 276 | 567 | 7 | 296 | 9.76e-110 | 330 |
MS.gene019532.t1 | AT2G24190 | 56.028 | 282 | 117 | 4 | 1 | 280 | 1 | 277 | 3.60e-107 | 323 |
MS.gene019532.t1 | AT2G24190 | 54.455 | 303 | 130 | 5 | 268 | 567 | 4 | 301 | 1.03e-109 | 330 |
MS.gene019532.t1 | AT2G24190 | 56.522 | 276 | 113 | 4 | 7 | 280 | 12 | 282 | 1.46e-105 | 320 |
MS.gene019532.t1 | AT1G01800 | 52.632 | 209 | 96 | 2 | 359 | 567 | 55 | 260 | 1.14e-74 | 238 |
MS.gene019532.t1 | AT1G01800 | 51.309 | 191 | 90 | 2 | 90 | 280 | 55 | 242 | 6.18e-65 | 213 |
MS.gene019532.t1 | AT5G51030 | 37.542 | 301 | 151 | 5 | 278 | 567 | 40 | 314 | 1.73e-59 | 200 |
MS.gene019532.t1 | AT5G51030 | 37.102 | 283 | 141 | 5 | 9 | 280 | 40 | 296 | 2.37e-53 | 184 |
MS.gene019532.t1 | AT3G59710 | 36.594 | 276 | 146 | 6 | 278 | 550 | 21 | 270 | 1.15e-49 | 174 |
MS.gene019532.t1 | AT3G59710 | 36.559 | 279 | 140 | 7 | 4 | 272 | 10 | 261 | 1.07e-48 | 171 |
MS.gene019532.t1 | AT3G59710 | 36.364 | 286 | 152 | 7 | 278 | 559 | 31 | 290 | 2.21e-49 | 173 |
MS.gene019532.t1 | AT3G59710 | 36.940 | 268 | 138 | 6 | 9 | 272 | 31 | 271 | 1.75e-47 | 168 |
MS.gene019532.t1 | AT3G59710 | 36.594 | 276 | 146 | 6 | 278 | 550 | 50 | 299 | 7.01e-49 | 172 |
MS.gene019532.t1 | AT3G59710 | 36.940 | 268 | 138 | 6 | 9 | 272 | 50 | 290 | 2.97e-47 | 168 |
MS.gene019532.t1 | AT5G61830 | 37.086 | 302 | 154 | 6 | 278 | 567 | 39 | 316 | 1.24e-48 | 171 |
MS.gene019532.t1 | AT5G61830 | 36.396 | 283 | 145 | 4 | 9 | 280 | 39 | 297 | 1.19e-45 | 164 |
MS.gene019532.t1 | AT5G61830 | 37.086 | 302 | 154 | 6 | 278 | 567 | 39 | 316 | 1.24e-48 | 171 |
MS.gene019532.t1 | AT5G61830 | 36.396 | 283 | 145 | 4 | 9 | 280 | 39 | 297 | 1.19e-45 | 164 |
Find 120 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCATTCAAATAAATTATTA+TGG | 0.154385 | 8.1:+70359318 | MS.gene019532:CDS |
TGCATTCAAATAAATTATTA+TGG | 0.154385 | 8.1:+70365480 | MS.gene019532:CDS |
GAATATCAAGTTTGCCAAAT+TGG | 0.158459 | 8.1:-70364080 | None:intergenic |
GAATATCAAGTTTGGCAAAA+TGG | 0.187932 | 8.1:-70356992 | None:intergenic |
ATTTGGCAAACTTGATATTC+TGG | 0.229964 | 8.1:+70364083 | MS.gene019532:CDS |
GGACCCTTCTTCAAAATCTT+TGG | 0.255198 | 8.1:-70366930 | None:intergenic |
GCCCTTCTCAATTCTTCATC+TGG | 0.256118 | 8.1:-70359264 | None:intergenic |
AGCATCTGGTTTATCTGATT+TGG | 0.288076 | 8.1:+70356902 | MS.gene019532:CDS |
GGAAGCAGGGCTAACCTTAC+AGG | 0.298608 | 8.1:-70367142 | None:intergenic |
GAGAATAGATGAAGTAATAA+AGG | 0.307579 | 8.1:+70366901 | MS.gene019532:CDS |
CTCTTGGTGAATCAGATAAT+TGG | 0.310145 | 8.1:-70359377 | None:intergenic |
TTTGAAACACTCAAAGCTTC+TGG | 0.321050 | 8.1:+70363976 | MS.gene019532:CDS |
TAGAATAGATGAAGTGATAA+TGG | 0.334430 | 8.1:+70359623 | MS.gene019532:CDS |
AATATCAAGTTTGCCAAATT+GGG | 0.350754 | 8.1:-70364079 | None:intergenic |
GAAAGTAGTGCTAACCTAAC+TGG | 0.352055 | 8.1:-70359864 | None:intergenic |
AATATCAAGTTTGGCAAAAT+GGG | 0.357101 | 8.1:-70356991 | None:intergenic |
TGTTACCAGAATATCAAGTT+TGG | 0.364772 | 8.1:-70357000 | None:intergenic |
CTTCCCAATGGTAGTCCATC+TGG | 0.371553 | 8.1:+70367160 | MS.gene019532:CDS |
GCATTCAAATAAATTATTAT+GGG | 0.371941 | 8.1:+70359319 | MS.gene019532:CDS |
GCATTCAAATAAATTATTAT+GGG | 0.371941 | 8.1:+70365481 | MS.gene019532:CDS |
ATTAGTTTGTATCAAATGAA+TGG | 0.373385 | 8.1:+70366837 | MS.gene019532:intron |
ACAGGTGCAAACAAAGGAAT+TGG | 0.377483 | 8.1:+70363871 | MS.gene019532:CDS |
CTTTGCAAGAATTCTTGTAT+AGG | 0.377721 | 8.1:-70359739 | None:intergenic |
CTCAGATATGCAGTGGTGAC+TGG | 0.377886 | 8.1:+70356765 | MS.gene019532:intron |
AAATGGGAGAACCGACAAAA+AGG | 0.378299 | 8.1:+70356660 | None:intergenic |
ACTGGAGCAAACAAAGGAAT+TGG | 0.380333 | 8.1:+70356783 | MS.gene019532:CDS |
GAAAAGAGGTCTTCATGCTT+TGG | 0.381657 | 8.1:+70356869 | MS.gene019532:CDS |
TTGGAAACACTTAAAGCATC+TGG | 0.383030 | 8.1:+70356888 | MS.gene019532:CDS |
ATAGGCATTCATAGAAGCTT+TGG | 0.393005 | 8.1:-70359721 | None:intergenic |
CTCAGGTATGCAGTGGTGAC+AGG | 0.415457 | 8.1:+70363853 | MS.gene019532:intron |
ACTGATATGACTACTAATAC+TGG | 0.417319 | 8.1:+70359810 | MS.gene019532:CDS |
ATCATGTAGGTTAACAATGC+TGG | 0.421523 | 8.1:+70358391 | MS.gene019532:intron |
TGAAGCTTTAGCAACACTAT+AGG | 0.422772 | 8.1:-70366987 | None:intergenic |
GAATTGGGTTAGAAATAGTT+AGG | 0.423116 | 8.1:+70363887 | MS.gene019532:CDS |
AGCAGCTTGTATCAAATGAA+TGG | 0.435256 | 8.1:+70359559 | MS.gene019532:intron |
CTTCAGCCATCATTACAAAC+GGG | 0.439586 | 8.1:+70364924 | MS.gene019532:CDS |
ACAGATATAACTGCTAATAC+TGG | 0.439952 | 8.1:+70367088 | MS.gene019532:CDS |
ACACAATTGATGTAGAAGTT+AGG | 0.443347 | 8.1:-70367046 | None:intergenic |
TATCAGATGATGAATTGAAA+AGG | 0.448658 | 8.1:+70365424 | MS.gene019532:CDS |
ATGGACTACCATTGGGAAGC+AGG | 0.449716 | 8.1:-70367156 | None:intergenic |
CCCTTCTCAATTCTTCATCT+GGG | 0.450844 | 8.1:-70359263 | None:intergenic |
TTAGTTTGTATCAAATGAAT+GGG | 0.453257 | 8.1:+70366838 | MS.gene019532:intron |
ACGAACCCCGTTTGTAATGA+TGG | 0.456335 | 8.1:-70364930 | None:intergenic |
TTAACAATGCTGGGATTAGC+GGG | 0.461131 | 8.1:+70358401 | MS.gene019532:CDS |
GATGATACATTCACTACTCT+TGG | 0.462961 | 8.1:-70359393 | None:intergenic |
GTTAACAATGCTGGGATTAG+CGG | 0.466695 | 8.1:+70358400 | MS.gene019532:CDS |
GTTAAACAGTTAGCTTCAGC+TGG | 0.466868 | 8.1:+70356816 | MS.gene019532:CDS |
AGAAGCTTTGGCAACAGTAT+AGG | 0.473733 | 8.1:-70359709 | None:intergenic |
GTTAGGCAGTTAGCTTCAGC+TGG | 0.474351 | 8.1:+70363904 | MS.gene019532:CDS |
TGCATCAACTGTGTTTGCCC+TGG | 0.476427 | 8.1:+70359777 | MS.gene019532:CDS |
ACTTCAGCCATCATTACAAA+CGG | 0.479576 | 8.1:+70364923 | MS.gene019532:CDS |
CTATAGGCAGCAAAATATCT+TGG | 0.480280 | 8.1:-70366971 | None:intergenic |
TAGAAAGAAAAGGATGGCCT+AGG | 0.482082 | 8.1:+70359676 | MS.gene019532:CDS |
CAGTGATGTTGAAAACCTTA+CGG | 0.483046 | 8.1:+70366874 | MS.gene019532:CDS |
AAGGAGCTGCAAATCCAGTT+AGG | 0.483475 | 8.1:+70359850 | MS.gene019532:CDS |
AGAGTAGTCAATGTATCATC+AGG | 0.484821 | 8.1:+70365558 | MS.gene019532:CDS |
TTGGTGAATCAGACAATTGA+AGG | 0.485751 | 8.1:-70365536 | None:intergenic |
TACATCAATTGTGTGTGCCC+TGG | 0.487696 | 8.1:+70367055 | MS.gene019532:CDS |
ATCAGATGATGAATTGAAAA+GGG | 0.496679 | 8.1:+70365425 | MS.gene019532:CDS |
GTATCAAATGAATGGGCTAA+AGG | 0.497772 | 8.1:+70359567 | MS.gene019532:CDS |
CATCTATTCTCTCTTCCGTA+AGG | 0.499962 | 8.1:-70366889 | None:intergenic |
GTTAACAATGCTGCGATTGG+CGG | 0.502245 | 8.1:+70364872 | MS.gene019532:CDS |
ACAATTGAAGGAGGGGAAGA+AGG | 0.507360 | 8.1:-70365524 | None:intergenic |
GATGATACATTGACTACTCT+TGG | 0.507830 | 8.1:-70365555 | None:intergenic |
GAAGGGTCCTTAGGAAGAAA+AGG | 0.508382 | 8.1:+70366944 | MS.gene019532:CDS |
CTGGAGCAAACAAAGGAATT+GGG | 0.510552 | 8.1:+70356784 | MS.gene019532:CDS |
GTATCAAATGAATGGGCTAA+AGG | 0.511039 | 8.1:+70366845 | MS.gene019532:CDS |
AAGTCCAGATGGACTACCAT+TGG | 0.511537 | 8.1:-70367164 | None:intergenic |
GAAGGGTCCTTAGAAAGAAA+AGG | 0.512136 | 8.1:+70359666 | MS.gene019532:CDS |
GGTTTCTTTACAGCAGAAGA+AGG | 0.512261 | 8.1:+70367109 | MS.gene019532:CDS |
CTTTGCGGTAATTCTTGTGT+AGG | 0.515707 | 8.1:-70367017 | None:intergenic |
ATCAGGAGCGGGTAGGATAG+AGG | 0.520296 | 8.1:+70365575 | MS.gene019532:CDS |
TCATGTAGGTTAACAATGCT+GGG | 0.521945 | 8.1:+70358392 | MS.gene019532:intron |
GCAGCTTGTATCAAATGAAT+GGG | 0.524347 | 8.1:+70359560 | MS.gene019532:intron |
CAGGTGCAAACAAAGGAATT+GGG | 0.528013 | 8.1:+70363872 | MS.gene019532:CDS |
AAGGTGCTGCTCATCCTGTA+AGG | 0.528127 | 8.1:+70367128 | MS.gene019532:CDS |
AGTCCAGATGGACTACCATT+GGG | 0.533174 | 8.1:-70367163 | None:intergenic |
ATATCAGTCTTAACATAACC+AGG | 0.548337 | 8.1:-70359795 | None:intergenic |
CATTCAAATAAATTATTATG+GGG | 0.549783 | 8.1:+70359320 | MS.gene019532:CDS |
CATTCAAATAAATTATTATG+GGG | 0.549783 | 8.1:+70365482 | MS.gene019532:CDS |
TTCTGTGAGGTTATCAACAT+CGG | 0.554378 | 8.1:-70359598 | None:intergenic |
TTGGTGAATCAGATAATTGG+AGG | 0.560460 | 8.1:-70359374 | None:intergenic |
GAATCAGATAATTGGAGGAG+GGG | 0.565812 | 8.1:-70359369 | None:intergenic |
TGGACTACCATTGGGAAGCA+GGG | 0.567792 | 8.1:-70367155 | None:intergenic |
GAATCAGACAATTGAAGGAG+GGG | 0.570945 | 8.1:-70365531 | None:intergenic |
GTCAATGTATCATCAGGAGC+GGG | 0.571810 | 8.1:+70365564 | MS.gene019532:CDS |
ACATCAAGAGATGAGAAAAG+AGG | 0.576041 | 8.1:+70356855 | MS.gene019532:CDS |
TGAATCAGATAATTGGAGGA+GGG | 0.578854 | 8.1:-70359370 | None:intergenic |
TCCCAGATGAAGAATTGAGA+AGG | 0.579362 | 8.1:+70359262 | MS.gene019532:CDS |
GTATAGGCAGCTGCAAACCT+AGG | 0.579605 | 8.1:-70359693 | None:intergenic |
ACTGCAAGAGATGAGAAAAG+AGG | 0.580383 | 8.1:+70363943 | MS.gene019532:CDS |
GTGAATCAGATAATTGGAGG+AGG | 0.586325 | 8.1:-70359371 | None:intergenic |
TAGGTTAACAATGCTGCGAT+TGG | 0.597415 | 8.1:+70364869 | MS.gene019532:intron |
CTTCTGCAATCATGACGAGT+GGG | 0.598898 | 8.1:+70358452 | MS.gene019532:CDS |
GAAGTTAGGATACTTCTTTG+CGG | 0.605481 | 8.1:-70367032 | None:intergenic |
TCTCTTCCTCAGGTATGCAG+TGG | 0.615491 | 8.1:+70363846 | MS.gene019532:intron |
TGAATCAGACAATTGAAGGA+GGG | 0.616623 | 8.1:-70365532 | None:intergenic |
TTTGACAAAATCTGCAAGAG+AGG | 0.617844 | 8.1:-70364055 | None:intergenic |
AGTATTTCATCAACTAGATG+TGG | 0.618005 | 8.1:+70356926 | MS.gene019532:CDS |
CATCTATTCTATCTTCTGTG+AGG | 0.618244 | 8.1:-70359611 | None:intergenic |
CCCAGATGAAGAATTGAGAA+GGG | 0.618468 | 8.1:+70359263 | MS.gene019532:CDS |
GGTATGTTGACAGTAGAAGA+AGG | 0.620939 | 8.1:+70359831 | MS.gene019532:CDS |
AGGTTAGCCCTGCTTCCCAA+TGG | 0.621227 | 8.1:+70367148 | MS.gene019532:CDS |
GGTCCTTAGGAAGAAAAGGT+TGG | 0.622258 | 8.1:+70366948 | MS.gene019532:CDS |
GTGAATCAGACAATTGAAGG+AGG | 0.627903 | 8.1:-70365533 | None:intergenic |
ACACAGTTGATGCAGAAGGT+AGG | 0.629564 | 8.1:-70359768 | None:intergenic |
GCAAACACAGTTGATGCAGA+AGG | 0.634669 | 8.1:-70359772 | None:intergenic |
ACTTCTGCAATCATGACGAG+TGG | 0.638146 | 8.1:+70358451 | MS.gene019532:CDS |
GTGGTGACAGGTGCAAACAA+AGG | 0.642353 | 8.1:+70363865 | MS.gene019532:CDS |
ATGTATCATCAGGAGCGGGT+AGG | 0.653922 | 8.1:+70365568 | MS.gene019532:CDS |
TTGCAGAAGTGAATAAATCA+CGG | 0.657607 | 8.1:-70358438 | None:intergenic |
GTGGTGACTGGAGCAAACAA+AGG | 0.662474 | 8.1:+70356777 | MS.gene019532:CDS |
AGCTTCAGCTGGAATCAAAG+TGG | 0.664366 | 8.1:+70356827 | MS.gene019532:CDS |
AGCTTCAGCTGGAATCAAAG+TGG | 0.664366 | 8.1:+70363915 | MS.gene019532:CDS |
AGTCAATGTATCATCAGGAG+CGG | 0.665325 | 8.1:+70365563 | MS.gene019532:CDS |
GGTCCTTAGAAAGAAAAGGA+TGG | 0.668688 | 8.1:+70359670 | MS.gene019532:CDS |
TTCTGCAATCATGACGAGTG+GGG | 0.669660 | 8.1:+70358453 | MS.gene019532:CDS |
TAACAATGCTGGGATTAGCG+GGG | 0.680861 | 8.1:+70358402 | MS.gene019532:CDS |
TTCAGCCATCATTACAAACG+GGG | 0.683781 | 8.1:+70364925 | MS.gene019532:CDS |
TATCAGTCTTAACATAACCA+GGG | 0.713837 | 8.1:-70359794 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 70356662 | 70367219 | 70356662 | ID=MS.gene019532 |
chr8.1 | mRNA | 70356662 | 70367219 | 70356662 | ID=MS.gene019532.t1;Parent=MS.gene019532 |
chr8.1 | exon | 70356662 | 70356681 | 70356662 | ID=MS.gene019532.t1.exon1;Parent=MS.gene019532.t1 |
chr8.1 | CDS | 70356662 | 70356681 | 70356662 | ID=cds.MS.gene019532.t1;Parent=MS.gene019532.t1 |
chr8.1 | exon | 70356770 | 70357016 | 70356770 | ID=MS.gene019532.t1.exon2;Parent=MS.gene019532.t1 |
chr8.1 | CDS | 70356770 | 70357016 | 70356770 | ID=cds.MS.gene019532.t1;Parent=MS.gene019532.t1 |
chr8.1 | exon | 70358400 | 70358474 | 70358400 | ID=MS.gene019532.t1.exon3;Parent=MS.gene019532.t1 |
chr8.1 | CDS | 70358400 | 70358474 | 70358400 | ID=cds.MS.gene019532.t1;Parent=MS.gene019532.t1 |
chr8.1 | exon | 70359258 | 70359434 | 70359258 | ID=MS.gene019532.t1.exon4;Parent=MS.gene019532.t1 |
chr8.1 | CDS | 70359258 | 70359434 | 70359258 | ID=cds.MS.gene019532.t1;Parent=MS.gene019532.t1 |
chr8.1 | exon | 70359564 | 70359871 | 70359564 | ID=MS.gene019532.t1.exon5;Parent=MS.gene019532.t1 |
chr8.1 | CDS | 70359564 | 70359871 | 70359564 | ID=cds.MS.gene019532.t1;Parent=MS.gene019532.t1 |
chr8.1 | exon | 70363858 | 70364104 | 70363858 | ID=MS.gene019532.t1.exon6;Parent=MS.gene019532.t1 |
chr8.1 | CDS | 70363858 | 70364104 | 70363858 | ID=cds.MS.gene019532.t1;Parent=MS.gene019532.t1 |
chr8.1 | exon | 70364872 | 70364946 | 70364872 | ID=MS.gene019532.t1.exon7;Parent=MS.gene019532.t1 |
chr8.1 | CDS | 70364872 | 70364946 | 70364872 | ID=cds.MS.gene019532.t1;Parent=MS.gene019532.t1 |
chr8.1 | exon | 70365420 | 70365596 | 70365420 | ID=MS.gene019532.t1.exon8;Parent=MS.gene019532.t1 |
chr8.1 | CDS | 70365420 | 70365596 | 70365420 | ID=cds.MS.gene019532.t1;Parent=MS.gene019532.t1 |
chr8.1 | exon | 70366842 | 70367219 | 70366842 | ID=MS.gene019532.t1.exon9;Parent=MS.gene019532.t1 |
chr8.1 | CDS | 70366842 | 70367219 | 70366842 | ID=cds.MS.gene019532.t1;Parent=MS.gene019532.t1 |
Gene Sequence |
Protein sequence |