Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019537.t1 | AET02074.1 | 93.8 | 291 | 18 | 0 | 7 | 297 | 8 | 298 | 1.80E-147 | 531.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019537.t1 | Q9M2E2 | 55.1 | 301 | 127 | 5 | 1 | 298 | 1 | 296 | 1.7e-85 | 317.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019537.t1 | G7J258 | 93.8 | 291 | 18 | 0 | 7 | 297 | 8 | 298 | 1.3e-147 | 531.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019537.t1 | MTR_8g031960 | 93.857 | 293 | 17 | 1 | 7 | 298 | 8 | 300 | 0.0 | 560 |
| MS.gene019537.t1 | MTR_8g031980 | 90.940 | 298 | 27 | 0 | 1 | 298 | 1 | 298 | 0.0 | 554 |
| MS.gene019537.t1 | MTR_8g031940 | 77.258 | 299 | 67 | 1 | 1 | 298 | 1 | 299 | 2.20e-169 | 471 |
| MS.gene019537.t1 | MTR_8g031990 | 69.463 | 298 | 91 | 0 | 1 | 298 | 1 | 298 | 1.01e-154 | 434 |
| MS.gene019537.t1 | MTR_8g032020 | 70.134 | 298 | 88 | 1 | 2 | 298 | 3 | 300 | 9.45e-154 | 432 |
| MS.gene019537.t1 | MTR_8g032000 | 67.785 | 298 | 96 | 0 | 1 | 298 | 1 | 298 | 5.89e-152 | 427 |
| MS.gene019537.t1 | MTR_8g032010 | 68.121 | 298 | 95 | 0 | 1 | 298 | 1 | 298 | 2.56e-151 | 426 |
| MS.gene019537.t1 | MTR_7g076660 | 58.863 | 299 | 109 | 2 | 1 | 298 | 1 | 286 | 5.00e-127 | 363 |
| MS.gene019537.t1 | MTR_7g076660 | 59.184 | 294 | 106 | 2 | 6 | 298 | 7 | 287 | 8.51e-126 | 360 |
| MS.gene019537.t1 | MTR_7g076655 | 57.525 | 299 | 113 | 2 | 1 | 298 | 1 | 286 | 1.04e-123 | 355 |
| MS.gene019537.t1 | MTR_8g031910 | 58.863 | 299 | 110 | 4 | 1 | 298 | 1 | 287 | 4.31e-118 | 341 |
| MS.gene019537.t1 | MTR_7g076660 | 58.029 | 274 | 101 | 2 | 26 | 298 | 2 | 262 | 7.72e-115 | 332 |
| MS.gene019537.t1 | MTR_8g031600 | 55.000 | 300 | 131 | 2 | 1 | 298 | 1 | 298 | 2.30e-114 | 332 |
| MS.gene019537.t1 | MTR_8g031630 | 55.333 | 300 | 129 | 4 | 1 | 298 | 1 | 297 | 4.00e-114 | 331 |
| MS.gene019537.t1 | MTR_8g031900 | 55.034 | 298 | 129 | 2 | 1 | 298 | 1 | 293 | 4.16e-114 | 331 |
| MS.gene019537.t1 | MTR_8g031610 | 55.479 | 292 | 124 | 4 | 9 | 298 | 7 | 294 | 8.88e-112 | 325 |
| MS.gene019537.t1 | MTR_7g076665 | 55.184 | 299 | 129 | 2 | 1 | 298 | 1 | 295 | 1.05e-111 | 325 |
| MS.gene019537.t1 | MTR_5g062280 | 54.181 | 299 | 132 | 3 | 1 | 298 | 1 | 295 | 2.20e-110 | 322 |
| MS.gene019537.t1 | MTR_8g031650 | 56.014 | 291 | 123 | 4 | 10 | 298 | 104 | 391 | 1.16e-109 | 323 |
| MS.gene019537.t1 | MTR_8g031650 | 56.863 | 102 | 42 | 2 | 170 | 269 | 2 | 103 | 6.28e-35 | 130 |
| MS.gene019537.t1 | MTR_8g031650 | 56.014 | 291 | 123 | 4 | 10 | 298 | 270 | 557 | 1.06e-107 | 324 |
| MS.gene019537.t1 | MTR_8g031650 | 55.720 | 271 | 116 | 3 | 1 | 269 | 1 | 269 | 1.25e-100 | 306 |
| MS.gene019537.t1 | MTR_3g079320 | 48.829 | 299 | 147 | 3 | 5 | 298 | 9 | 306 | 1.11e-92 | 277 |
| MS.gene019537.t1 | MTR_8g031850 | 46.309 | 298 | 117 | 3 | 1 | 298 | 1 | 255 | 6.81e-86 | 258 |
| MS.gene019537.t1 | MTR_8g032030 | 74.138 | 174 | 44 | 1 | 1 | 173 | 1 | 174 | 2.10e-85 | 256 |
| MS.gene019537.t1 | MTR_7g106800 | 49.158 | 297 | 91 | 4 | 7 | 298 | 9 | 250 | 4.58e-85 | 256 |
| MS.gene019537.t1 | MTR_3g098470 | 39.672 | 305 | 146 | 6 | 4 | 296 | 32 | 310 | 4.78e-68 | 214 |
| MS.gene019537.t1 | MTR_5g083430 | 56.395 | 172 | 75 | 0 | 127 | 298 | 13 | 184 | 2.90e-67 | 208 |
| MS.gene019537.t1 | MTR_1g031180 | 38.033 | 305 | 151 | 6 | 4 | 296 | 37 | 315 | 1.70e-60 | 195 |
| MS.gene019537.t1 | MTR_4g087460 | 38.944 | 303 | 144 | 9 | 4 | 290 | 19 | 296 | 1.10e-58 | 190 |
| MS.gene019537.t1 | MTR_8g096060 | 34.740 | 308 | 154 | 7 | 4 | 296 | 34 | 309 | 4.00e-53 | 176 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019537.t1 | AT3G61220 | 55.150 | 301 | 127 | 5 | 1 | 298 | 1 | 296 | 1.31e-115 | 335 |
| MS.gene019537.t1 | AT1G01800 | 55.442 | 294 | 126 | 3 | 7 | 298 | 5 | 295 | 8.68e-115 | 333 |
| MS.gene019537.t1 | AT3G61220 | 55.932 | 295 | 122 | 5 | 7 | 298 | 14 | 303 | 4.09e-114 | 332 |
| MS.gene019537.t1 | AT3G61220 | 55.932 | 295 | 122 | 5 | 7 | 298 | 38 | 327 | 7.45e-114 | 332 |
| MS.gene019537.t1 | AT2G24190 | 54.276 | 304 | 125 | 6 | 1 | 298 | 1 | 296 | 1.65e-111 | 325 |
| MS.gene019537.t1 | AT2G24190 | 54.698 | 298 | 121 | 6 | 7 | 298 | 12 | 301 | 4.32e-110 | 321 |
| MS.gene019537.t1 | AT1G01800 | 52.632 | 209 | 96 | 1 | 90 | 298 | 55 | 260 | 5.64e-76 | 233 |
| MS.gene019537.t1 | AT5G51030 | 38.689 | 305 | 149 | 6 | 4 | 296 | 35 | 313 | 1.49e-67 | 213 |
| MS.gene019537.t1 | AT3G59710 | 39.519 | 291 | 146 | 7 | 4 | 290 | 16 | 280 | 2.06e-62 | 199 |
| MS.gene019537.t1 | AT3G59710 | 39.519 | 291 | 146 | 7 | 4 | 290 | 26 | 290 | 2.41e-62 | 199 |
| MS.gene019537.t1 | AT3G59710 | 39.519 | 291 | 146 | 7 | 4 | 290 | 45 | 309 | 7.67e-62 | 199 |
| MS.gene019537.t1 | AT5G61830 | 37.908 | 306 | 153 | 6 | 4 | 296 | 34 | 315 | 2.86e-59 | 192 |
| MS.gene019537.t1 | AT5G61830 | 37.908 | 306 | 153 | 6 | 4 | 296 | 34 | 315 | 2.86e-59 | 192 |
| MS.gene019537.t1 | AT4G09750 | 26.910 | 301 | 152 | 12 | 3 | 290 | 40 | 285 | 4.02e-11 | 63.2 |
Find 55 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGGCAAACTTGATATTC+TGG | 0.218733 | 8.1:+70403519 | MS.gene019537:CDS |
| TGTTTGCAAATAAATTATTA+TGG | 0.282681 | 8.1:+70404826 | MS.gene019537:CDS |
| TGTAATTAATGACAAAGATT+TGG | 0.327767 | 8.1:+70404076 | MS.gene019537:CDS |
| CATCTACTTTCTCTTCAGTT+AGG | 0.340654 | 8.1:-70405626 | None:intergenic |
| ATCAGAAGATGAAAGGAAAA+AGG | 0.343208 | 8.1:+70404771 | MS.gene019537:CDS |
| TTGGTGAATCAGATAACTTT+AGG | 0.350628 | 8.1:-70404882 | None:intergenic |
| ATCCACTACAGGGAAGTTAA+AGG | 0.358802 | 8.1:+70404921 | MS.gene019537:CDS |
| ACAGGATCAAACAAAGGAAT+TGG | 0.374893 | 8.1:+70403307 | MS.gene019537:CDS |
| GAATGGACAAAGAAAGTCTT+TGG | 0.382879 | 8.1:+70405591 | MS.gene019537:CDS |
| GAAAAGAGGTCTTCATGCTT+TGG | 0.383038 | 8.1:+70403393 | MS.gene019537:CDS |
| AGATTTCAAAGAAGGTTCAT+TGG | 0.391106 | 8.1:+70405671 | MS.gene019537:CDS |
| ACCAAAGGCTGGCCTAAAAC+TGG | 0.408774 | 8.1:+70405696 | MS.gene019537:CDS |
| CTTCAGTCCTATGATAGAAT+TGG | 0.420152 | 8.1:-70405920 | None:intergenic |
| TATGTTACCACAGATATAAC+TGG | 0.422565 | 8.1:+70405816 | MS.gene019537:CDS |
| GTTAACAATGCAGGGATTAG+TGG | 0.432718 | 8.1:+70404050 | MS.gene019537:CDS |
| TCCAGGATTGCAGTGGTGAC+AGG | 0.434379 | 8.1:+70403289 | MS.gene019537:intron |
| CATCTGGCCAATTCTATCAT+AGG | 0.435865 | 8.1:+70405913 | MS.gene019537:CDS |
| TACCTTTAACTTCCCTGTAG+TGG | 0.446734 | 8.1:-70404923 | None:intergenic |
| ACAGATATAACTGGCAATAC+TGG | 0.452816 | 8.1:+70405825 | MS.gene019537:CDS |
| CTTCCCAATGGAAGTCCATC+TGG | 0.455528 | 8.1:+70405897 | MS.gene019537:CDS |
| GTTAAGCAGTTAGCTTCAGC+TGG | 0.466868 | 8.1:+70403340 | MS.gene019537:CDS |
| GTGAATGTATCATCCACTAC+AGG | 0.468640 | 8.1:+70404910 | MS.gene019537:CDS |
| TTGGCCAGATGGACTTCCAT+TGG | 0.470646 | 8.1:-70405901 | None:intergenic |
| GATGATACATTCACAATCCT+TGG | 0.480577 | 8.1:-70404901 | None:intergenic |
| ATAATATAGTACTAATCAAA+AGG | 0.488781 | 8.1:-70405949 | None:intergenic |
| TGAATGCAGGTTAACAATGC+AGG | 0.492400 | 8.1:+70404041 | MS.gene019537:intron |
| ATACTATTGATGCATAAAGT+AGG | 0.503498 | 8.1:-70405783 | None:intergenic |
| TGGCCAGATGGACTTCCATT+GGG | 0.503888 | 8.1:-70405900 | None:intergenic |
| AGGGTTAGAGATAAGCAAAC+TGG | 0.506423 | 8.1:-70404099 | None:intergenic |
| TTGGAAACACTCAAAGCCTC+TGG | 0.511577 | 8.1:+70403412 | MS.gene019537:CDS |
| CTATGATAGAATTGGCCAGA+TGG | 0.547526 | 8.1:-70405912 | None:intergenic |
| ATATCTGTGGTAACATAACC+AGG | 0.549903 | 8.1:-70405810 | None:intergenic |
| TGCATCAATAGTATTTGCCC+TGG | 0.551292 | 8.1:+70405792 | MS.gene019537:CDS |
| GCAGCTTTAGACAAGACATA+AGG | 0.557043 | 8.1:-70405723 | None:intergenic |
| GTGAATCAGATAACTTTAGG+AGG | 0.565611 | 8.1:-70404879 | None:intergenic |
| GAATGCAGGTTAACAATGCA+GGG | 0.567392 | 8.1:+70404042 | MS.gene019537:intron |
| GAAATACAACAAAATCAGAA+AGG | 0.572831 | 8.1:-70403435 | None:intergenic |
| GGTCTCTTAACTGCTGAAGA+AGG | 0.578507 | 8.1:+70405846 | MS.gene019537:CDS |
| ACAGCAAGAGACGAGAAAAG+AGG | 0.579535 | 8.1:+70403379 | MS.gene019537:CDS |
| GTTCATTGGAAACCAAAGGC+TGG | 0.581607 | 8.1:+70405685 | MS.gene019537:CDS |
| AGGCATTATCAGAAGATGAA+AGG | 0.591783 | 8.1:+70404764 | MS.gene019537:intron |
| AAGCTAGCATTGCTTCCCAA+TGG | 0.591803 | 8.1:+70405885 | MS.gene019537:CDS |
| TGAATCAGATAACTTTAGGA+GGG | 0.593989 | 8.1:-70404878 | None:intergenic |
| AGATGGGACAAACTTCAGAA+AGG | 0.605356 | 8.1:+70402992 | None:intergenic |
| GTTTGTTTCCAGGATTGCAG+TGG | 0.612027 | 8.1:+70403282 | MS.gene019537:intron |
| GAAGGTTCATTGGAAACCAA+AGG | 0.613975 | 8.1:+70405681 | MS.gene019537:CDS |
| GAATCAGATAACTTTAGGAG+GGG | 0.624352 | 8.1:-70404877 | None:intergenic |
| TGAATGTATCATCCACTACA+GGG | 0.652351 | 8.1:+70404911 | MS.gene019537:CDS |
| AGTATTGCCAGTTATATCTG+TGG | 0.653549 | 8.1:-70405823 | None:intergenic |
| AAAGGCTGGCCTAAAACTGG+TGG | 0.662314 | 8.1:+70405699 | MS.gene019537:CDS |
| AGCTTCAGCTGGAATCAAAG+TGG | 0.664366 | 8.1:+70403351 | MS.gene019537:CDS |
| TAAAGTTATCTGATTCACCA+AGG | 0.666656 | 8.1:+70404884 | MS.gene019537:CDS |
| AACAAAATCAGAAAGGCCAG+AGG | 0.683131 | 8.1:-70403428 | None:intergenic |
| GTGGTGACAGGATCAAACAA+AGG | 0.683284 | 8.1:+70403301 | MS.gene019537:CDS |
| TATCTGTGGTAACATAACCA+GGG | 0.727307 | 8.1:-70405809 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGTTTTATTAAATCTTTA+TGG | + | chr8.1:70403681-70403700 | MS.gene019537:intron | 10.0% |
| !!! | TTTAAAATGACTTATATTTA+AGG | - | chr8.1:70404413-70404432 | None:intergenic | 10.0% |
| !!! | TTTAGTTTCTTAAAAAAAAA+CGG | - | chr8.1:70404503-70404522 | None:intergenic | 10.0% |
| !!! | TTTTTTTTAAGAAACTAAAT+TGG | + | chr8.1:70404504-70404523 | MS.gene019537:intron | 10.0% |
| !! | AAGAAATAATTTCTACATTT+GGG | - | chr8.1:70403745-70403764 | None:intergenic | 15.0% |
| !! | ATTACATAATGACTTATATA+TGG | - | chr8.1:70404476-70404495 | None:intergenic | 15.0% |
| !! | CAAAGTTTCATTTAAAAAAA+TGG | - | chr8.1:70403570-70403589 | None:intergenic | 15.0% |
| !! | TAAGAAATAATTTCTACATT+TGG | - | chr8.1:70403746-70403765 | None:intergenic | 15.0% |
| !! | TGTTTGCAAATAAATTATTA+TGG | + | chr8.1:70404826-70404845 | MS.gene019537:CDS | 15.0% |
| !! | TTACATAATGACTTATATAT+GGG | - | chr8.1:70404475-70404494 | None:intergenic | 15.0% |
| !! | TTAGTTTCTTAAAAAAAAAC+GGG | - | chr8.1:70404502-70404521 | None:intergenic | 15.0% |
| !! | TTTCATTTAAAAAAATGGAA+AGG | - | chr8.1:70403565-70403584 | None:intergenic | 15.0% |
| !!! | ACTATTTTCATTTAAAACTA+AGG | - | chr8.1:70403627-70403646 | None:intergenic | 15.0% |
| !!! | ATAATATACACTTTTATACA+TGG | - | chr8.1:70404670-70404689 | None:intergenic | 15.0% |
| !!! | ATGTATAAAAGTGTATATTA+TGG | + | chr8.1:70404669-70404688 | MS.gene019537:intron | 15.0% |
| !!! | CTAATGACATTAATATTTTT+TGG | + | chr8.1:70405235-70405254 | MS.gene019537:intron | 15.0% |
| !!! | TATTTTTTGGATTATTTTAG+AGG | + | chr8.1:70405248-70405267 | MS.gene019537:intron | 15.0% |
| !!! | TGTATAAAAGTGTATATTAT+GGG | + | chr8.1:70404670-70404689 | MS.gene019537:intron | 15.0% |
| !! | AAGGAATAAAAAAAGTAACT+TGG | - | chr8.1:70403608-70403627 | None:intergenic | 20.0% |
| !! | AATTTATTCTTCAATTGTAG+AGG | + | chr8.1:70405151-70405170 | MS.gene019537:intron | 20.0% |
| !! | ACTAAAAAAACTCCAAATAA+AGG | - | chr8.1:70404158-70404177 | None:intergenic | 20.0% |
| !! | ATTCTGGTAACATAAAAATT+TGG | + | chr8.1:70403535-70403554 | MS.gene019537:intron | 20.0% |
| !! | TAATGATTTACTTTCTATCT+AGG | - | chr8.1:70405132-70405151 | None:intergenic | 20.0% |
| !! | TGAATTATAGGAAAAAATGT+TGG | - | chr8.1:70403026-70403045 | None:intergenic | 20.0% |
| !! | TGTAATTAATGACAAAGATT+TGG | + | chr8.1:70404076-70404095 | MS.gene019537:CDS | 20.0% |
| !!! | AAGTGCAATTTTTTTTTAGA+GGG | - | chr8.1:70405392-70405411 | None:intergenic | 20.0% |
| !!! | CAAATTATTTTTTAGTCTCT+TGG | + | chr8.1:70405510-70405529 | MS.gene019537:intron | 20.0% |
| !!! | GTTGTTATTGTTTATACTTT+GGG | + | chr8.1:70404716-70404735 | MS.gene019537:intron | 20.0% |
| !!! | TAAGTGCAATTTTTTTTTAG+AGG | - | chr8.1:70405393-70405412 | None:intergenic | 20.0% |
| !!! | TCTTGATAACTTAATTTGAA+GGG | + | chr8.1:70403963-70403982 | MS.gene019537:intron | 20.0% |
| !!! | TGCTCATAATGTTAATATTT+TGG | + | chr8.1:70405072-70405091 | MS.gene019537:intron | 20.0% |
| !!! | TGTTGTTATTGTTTATACTT+TGG | + | chr8.1:70404715-70404734 | MS.gene019537:intron | 20.0% |
| !!! | TTCTTGATAACTTAATTTGA+AGG | + | chr8.1:70403962-70403981 | MS.gene019537:intron | 20.0% |
| !!! | TTTTCCTATAATTCATTCAT+AGG | + | chr8.1:70403031-70403050 | MS.gene019537:intron | 20.0% |
| !!! | TTTTTAGAAGATTTCAAAGA+AGG | + | chr8.1:70405663-70405682 | MS.gene019537:CDS | 20.0% |
| !!! | TTTTTTTAGTTTCCTTTCAT+TGG | + | chr8.1:70404168-70404187 | MS.gene019537:intron | 20.0% |
| ! | AATAAGGTATATTGTCTTCA+AGG | + | chr8.1:70405300-70405319 | MS.gene019537:intron | 25.0% |
| ! | AGTAAGTGTCTATAAACTAT+GGG | + | chr8.1:70404124-70404143 | MS.gene019537:intron | 25.0% |
| ! | ATAAGTTCCACTTAAAATGA+TGG | - | chr8.1:70405487-70405506 | None:intergenic | 25.0% |
| ! | ATACTATTGATGCATAAAGT+AGG | - | chr8.1:70405786-70405805 | None:intergenic | 25.0% |
| ! | CATTTAAAAAAATGGAAAGG+AGG | - | chr8.1:70403562-70403581 | None:intergenic | 25.0% |
| ! | CTAGTGTTAATCAATTCTTA+AGG | + | chr8.1:70404960-70404979 | MS.gene019537:intron | 25.0% |
| ! | CTATAATTCATTCATAGGAA+CGG | + | chr8.1:70403036-70403055 | MS.gene019537:intron | 25.0% |
| ! | CTTAAGAATTGATTAACACT+AGG | - | chr8.1:70404962-70404981 | None:intergenic | 25.0% |
| ! | GAAATACAACAAAATCAGAA+AGG | - | chr8.1:70403438-70403457 | None:intergenic | 25.0% |
| ! | GTTTACACCTAAATAAAGAT+TGG | - | chr8.1:70403887-70403906 | None:intergenic | 25.0% |
| ! | TAGGTTAACTAAGTTATTGA+TGG | - | chr8.1:70405113-70405132 | None:intergenic | 25.0% |
| ! | TCCAAAAAAGAAATGCAATA+AGG | + | chr8.1:70405284-70405303 | MS.gene019537:intron | 25.0% |
| ! | TCCAGAGAATAAAAAATGAA+TGG | + | chr8.1:70405574-70405593 | MS.gene019537:intron | 25.0% |
| !! | ACATTAGCCAATCTTTATTT+AGG | + | chr8.1:70403877-70403896 | MS.gene019537:intron | 25.0% |
| !! | TTATGAGCAAGATTTCATTT+TGG | - | chr8.1:70405061-70405080 | None:intergenic | 25.0% |
| !!! | ACCTTATTGCATTTCTTTTT+TGG | - | chr8.1:70405288-70405307 | None:intergenic | 25.0% |
| !!! | ACTTCTTGTTTTTCAAGATA+AGG | - | chr8.1:70404632-70404651 | None:intergenic | 25.0% |
| !!! | ATTGCATTTCTTTTTTGGAT+AGG | - | chr8.1:70405283-70405302 | None:intergenic | 25.0% |
| !!! | CTTCTTGTTTTTCAAGATAA+GGG | - | chr8.1:70404631-70404650 | None:intergenic | 25.0% |
| !!! | TATGAAAATTTGTTGAATGC+AGG | + | chr8.1:70404028-70404047 | MS.gene019537:intron | 25.0% |
| !!! | TCCATTCATTTTTTATTCTC+TGG | - | chr8.1:70405578-70405597 | None:intergenic | 25.0% |
| !!! | TTCTTGTTTTTCAAGATAAG+GGG | - | chr8.1:70404630-70404649 | None:intergenic | 25.0% |
| AGATTTCAAAGAAGGTTCAT+TGG | + | chr8.1:70405671-70405690 | MS.gene019537:CDS | 30.0% | |
| AGTTTATAGACACTTACTCT+AGG | - | chr8.1:70404122-70404141 | None:intergenic | 30.0% | |
| ATCAGAAGATGAAAGGAAAA+AGG | + | chr8.1:70404771-70404790 | MS.gene019537:CDS | 30.0% | |
| ATCTAAACACTCTTGTAACA+AGG | - | chr8.1:70403662-70403681 | None:intergenic | 30.0% | |
| ATTCTTCAATTGTAGAGGAA+TGG | + | chr8.1:70405156-70405175 | MS.gene019537:intron | 30.0% | |
| ATTTGGCAAACTTGATATTC+TGG | + | chr8.1:70403519-70403538 | MS.gene019537:CDS | 30.0% | |
| CGTTCCTATGAATGAATTAT+AGG | - | chr8.1:70403038-70403057 | None:intergenic | 30.0% | |
| CTATTTAGAAACAGAGTCTA+TGG | - | chr8.1:70404367-70404386 | None:intergenic | 30.0% | |
| GAACAAAGTAAGAGTAAACT+TGG | + | chr8.1:70405007-70405026 | MS.gene019537:intron | 30.0% | |
| GAGTAAGTGTCTATAAACTA+TGG | + | chr8.1:70404123-70404142 | MS.gene019537:intron | 30.0% | |
| GTTTATAGACACTTACTCTA+GGG | - | chr8.1:70404121-70404140 | None:intergenic | 30.0% | |
| TAAAGTTATCTGATTCACCA+AGG | + | chr8.1:70404884-70404903 | MS.gene019537:CDS | 30.0% | |
| TATGTTACCACAGATATAAC+TGG | + | chr8.1:70405816-70405835 | MS.gene019537:CDS | 30.0% | |
| TCATAACTCTTGTAACACAA+TGG | - | chr8.1:70403936-70403955 | None:intergenic | 30.0% | |
| TTCAGTATAATCGTATGTGT+CGG | - | chr8.1:70404266-70404285 | None:intergenic | 30.0% | |
| TTGGTGAATCAGATAACTTT+AGG | - | chr8.1:70404885-70404904 | None:intergenic | 30.0% | |
| ! | CGTTTTGTCAAATCTCAATT+TGG | + | chr8.1:70403502-70403521 | MS.gene019537:CDS | 30.0% |
| ! | GATAGAACCATCATTTTAAG+TGG | + | chr8.1:70405477-70405496 | MS.gene019537:intron | 30.0% |
| ! | TGAATCAGATAACTTTAGGA+GGG | - | chr8.1:70404881-70404900 | None:intergenic | 30.0% |
| !! | GTATTTGATTTGACCATTGT+AGG | + | chr8.1:70404744-70404763 | MS.gene019537:intron | 30.0% |
| !! | GTCAATATTCTAAAACCACA+CGG | + | chr8.1:70403254-70403273 | MS.gene019537:intron | 30.0% |
| !! | TCAATATTCTAAAACCACAC+GGG | + | chr8.1:70403255-70403274 | MS.gene019537:intron | 30.0% |
| !!! | CTTGGCTTTTAACTTGATTA+AGG | + | chr8.1:70405528-70405547 | MS.gene019537:intron | 30.0% |
| ACAGATATAACTGGCAATAC+TGG | + | chr8.1:70405825-70405844 | MS.gene019537:CDS | 35.0% | |
| ACAGGATCAAACAAAGGAAT+TGG | + | chr8.1:70403307-70403326 | MS.gene019537:CDS | 35.0% | |
| AGGCATTATCAGAAGATGAA+AGG | + | chr8.1:70404764-70404783 | MS.gene019537:intron | 35.0% | |
| AGTATTGCCAGTTATATCTG+TGG | - | chr8.1:70405826-70405845 | None:intergenic | 35.0% | |
| ATATCTGTGGTAACATAACC+AGG | - | chr8.1:70405813-70405832 | None:intergenic | 35.0% | |
| ATTCTGACCGATGCTAATTT+AGG | - | chr8.1:70404534-70404553 | None:intergenic | 35.0% | |
| CATCTACTTTCTCTTCAGTT+AGG | - | chr8.1:70405629-70405648 | None:intergenic | 35.0% | |
| CTTCAGTCCTATGATAGAAT+TGG | - | chr8.1:70405923-70405942 | None:intergenic | 35.0% | |
| GAATGGACAAAGAAAGTCTT+TGG | + | chr8.1:70405591-70405610 | MS.gene019537:CDS | 35.0% | |
| GATGATACATTCACAATCCT+TGG | - | chr8.1:70404904-70404923 | None:intergenic | 35.0% | |
| GTGAATCAGATAACTTTAGG+AGG | - | chr8.1:70404882-70404901 | None:intergenic | 35.0% | |
| GTGTTACAGTGATGACATAA+CGG | - | chr8.1:70405436-70405455 | None:intergenic | 35.0% | |
| TATCTGTGGTAACATAACCA+GGG | - | chr8.1:70405812-70405831 | None:intergenic | 35.0% | |
| TCTATCTTCCCAAGCAAAAT+AGG | - | chr8.1:70405035-70405054 | None:intergenic | 35.0% | |
| TGAATGTATCATCCACTACA+GGG | + | chr8.1:70404911-70404930 | MS.gene019537:CDS | 35.0% | |
| ! | AACTTGGAACCTATTTTGCT+TGG | + | chr8.1:70405023-70405042 | MS.gene019537:intron | 35.0% |
| ! | ACTTGGAACCTATTTTGCTT+GGG | + | chr8.1:70405024-70405043 | MS.gene019537:intron | 35.0% |
| ! | GAATCAGATAACTTTAGGAG+GGG | - | chr8.1:70404880-70404899 | None:intergenic | 35.0% |
| ! | TCTTCTGATAATGCCTACAA+TGG | - | chr8.1:70404760-70404779 | None:intergenic | 35.0% |
| ! | TGGGTGTTTTCACCTTTATT+TGG | + | chr8.1:70404143-70404162 | MS.gene019537:intron | 35.0% |
| !! | TCATGTTAACTTGTGCTCTT+GGG | + | chr8.1:70403704-70403723 | MS.gene019537:intron | 35.0% |
| !!! | ATTGCACTTATTTTACCACC+AGG | + | chr8.1:70405403-70405422 | MS.gene019537:intron | 35.0% |
| AACAAAATCAGAAAGGCCAG+AGG | - | chr8.1:70403431-70403450 | None:intergenic | 40.0% | |
| AGGGTTAGAGATAAGCAAAC+TGG | - | chr8.1:70404102-70404121 | None:intergenic | 40.0% | |
| ATCCACTACAGGGAAGTTAA+AGG | + | chr8.1:70404921-70404940 | MS.gene019537:CDS | 40.0% | |
| CATCTGGCCAATTCTATCAT+AGG | + | chr8.1:70405913-70405932 | MS.gene019537:CDS | 40.0% | |
| CTATGATAGAATTGGCCAGA+TGG | - | chr8.1:70405915-70405934 | None:intergenic | 40.0% | |
| GAAAAGAGGTCTTCATGCTT+TGG | + | chr8.1:70403393-70403412 | MS.gene019537:CDS | 40.0% | |
| GAAGGTTCATTGGAAACCAA+AGG | + | chr8.1:70405681-70405700 | MS.gene019537:CDS | 40.0% | |
| GAATGCAGGTTAACAATGCA+GGG | + | chr8.1:70404042-70404061 | MS.gene019537:intron | 40.0% | |
| GTATATTAACCCACTTGGGT+TGG | - | chr8.1:70404608-70404627 | None:intergenic | 40.0% | |
| GTCTATGGCAATATGAAGCA+CGG | - | chr8.1:70404352-70404371 | None:intergenic | 40.0% | |
| GTGAATGTATCATCCACTAC+AGG | + | chr8.1:70404910-70404929 | MS.gene019537:CDS | 40.0% | |
| GTTAACAATGCAGGGATTAG+TGG | + | chr8.1:70404050-70404069 | MS.gene019537:CDS | 40.0% | |
| TCTCAATTGTGATCGCATTG+CGG | + | chr8.1:70403122-70403141 | MS.gene019537:intron | 40.0% | |
| TGAATGCAGGTTAACAATGC+AGG | + | chr8.1:70404041-70404060 | MS.gene019537:intron | 40.0% | |
| TGCATCAATAGTATTTGCCC+TGG | + | chr8.1:70405792-70405811 | MS.gene019537:CDS | 40.0% | |
| TGGCTCACCTAAATTAGCAT+CGG | + | chr8.1:70404524-70404543 | MS.gene019537:intron | 40.0% | |
| ! | AAGGGGTATATTAACCCACT+TGG | - | chr8.1:70404613-70404632 | None:intergenic | 40.0% |
| ! | ACATAAGGACCACCAGTTTT+AGG | - | chr8.1:70405711-70405730 | None:intergenic | 40.0% |
| ! | AGGGGTATATTAACCCACTT+GGG | - | chr8.1:70404612-70404631 | None:intergenic | 40.0% |
| ! | TACCTTTAACTTCCCTGTAG+TGG | - | chr8.1:70404926-70404945 | None:intergenic | 40.0% |
| !! | AATGTTAACTTGTGCCCTCA+AGG | - | chr8.1:70403862-70403881 | None:intergenic | 40.0% |
| !! | ACTTCTTAACTTGTGCCTTG+AGG | + | chr8.1:70403844-70403863 | MS.gene019537:intron | 40.0% |
| !! | CATGTTAACTTGTGCTCTTG+GGG | + | chr8.1:70403705-70403724 | MS.gene019537:intron | 40.0% |
| !! | CTTCTTAACTTGTGCCTTGA+GGG | + | chr8.1:70403845-70403864 | MS.gene019537:intron | 40.0% |
| !! | GCAGCTTTAGACAAGACATA+AGG | - | chr8.1:70405726-70405745 | None:intergenic | 40.0% |
| !! | GTCATGTTAACTTGTGCTCT+TGG | + | chr8.1:70403703-70403722 | MS.gene019537:intron | 40.0% |
| AAGCTAGCATTGCTTCCCAA+TGG | + | chr8.1:70405885-70405904 | MS.gene019537:CDS | 45.0% | |
| ACAGCAAGAGACGAGAAAAG+AGG | + | chr8.1:70403379-70403398 | MS.gene019537:CDS | 45.0% | |
| AGCTTCAGCTGGAATCAAAG+TGG | + | chr8.1:70403351-70403370 | MS.gene019537:CDS | 45.0% | |
| GGTCTCTTAACTGCTGAAGA+AGG | + | chr8.1:70405846-70405865 | MS.gene019537:CDS | 45.0% | |
| GTGGTGACAGGATCAAACAA+AGG | + | chr8.1:70403301-70403320 | MS.gene019537:CDS | 45.0% | |
| GTTCATTGGAAACCAAAGGC+TGG | + | chr8.1:70405685-70405704 | MS.gene019537:CDS | 45.0% | |
| GTTTGTTTCCAGGATTGCAG+TGG | + | chr8.1:70403282-70403301 | MS.gene019537:intron | 45.0% | |
| TTGGAAACACTCAAAGCCTC+TGG | + | chr8.1:70403412-70403431 | MS.gene019537:CDS | 45.0% | |
| ! | GTTAAGCAGTTAGCTTCAGC+TGG | + | chr8.1:70403340-70403359 | MS.gene019537:CDS | 45.0% |
| ! | TCTTTGGATTAGGCGTGTTC+CGG | + | chr8.1:70404215-70404234 | MS.gene019537:intron | 45.0% |
| ! | TGACATAACGGCTTTTGACC+TGG | - | chr8.1:70405424-70405443 | None:intergenic | 45.0% |
| !! | CGTAGAAGGCATCCAATGAA+AGG | - | chr8.1:70404183-70404202 | None:intergenic | 45.0% |
| !! | TTAACCCACTTGGGTTGGTT+TGG | - | chr8.1:70404603-70404622 | None:intergenic | 45.0% |
| ACCACCAAACCAACCCAAGT+GGG | + | chr8.1:70404596-70404615 | MS.gene019537:intron | 50.0% | |
| CTTCCCAATGGAAGTCCATC+TGG | + | chr8.1:70405897-70405916 | MS.gene019537:CDS | 50.0% | |
| GAATCGAACCTGAGACCTTG+AGG | + | chr8.1:70404550-70404569 | MS.gene019537:intron | 50.0% | |
| GAGACCTTGAGGAGAAGCAA+AGG | + | chr8.1:70404561-70404580 | MS.gene019537:intron | 50.0% | |
| GCAATATGAAGCACGGACAC+TGG | - | chr8.1:70404345-70404364 | None:intergenic | 50.0% | |
| GCACGGACACTCTTTGGATT+AGG | + | chr8.1:70404205-70404224 | MS.gene019537:intron | 50.0% | |
| GTGACCTTTGCTTCTCCTCA+AGG | - | chr8.1:70404568-70404587 | None:intergenic | 50.0% | |
| TACGAAGCACGGACACTCTT+TGG | + | chr8.1:70404199-70404218 | MS.gene019537:intron | 50.0% | |
| TGGATGCCTTCTACGAAGCA+CGG | + | chr8.1:70404188-70404207 | MS.gene019537:intron | 50.0% | |
| TTGCTTCTCCTCAAGGTCTC+AGG | - | chr8.1:70404561-70404580 | None:intergenic | 50.0% | |
| ! | CATAACGGCTTTTGACCTGG+TGG | - | chr8.1:70405421-70405440 | None:intergenic | 50.0% |
| ! | TGGCCAGATGGACTTCCATT+GGG | - | chr8.1:70405903-70405922 | None:intergenic | 50.0% |
| ! | TTGGCCAGATGGACTTCCAT+TGG | - | chr8.1:70405904-70405923 | None:intergenic | 50.0% |
| !! | AAAGGCTGGCCTAAAACTGG+TGG | + | chr8.1:70405699-70405718 | MS.gene019537:CDS | 50.0% |
| !! | ACCAAAGGCTGGCCTAAAAC+TGG | + | chr8.1:70405696-70405715 | MS.gene019537:CDS | 50.0% |
| !!! | ACCAGTTTTAGGCCAGCCTT+TGG | - | chr8.1:70405700-70405719 | None:intergenic | 50.0% |
| CACCACCAAACCAACCCAAG+TGG | + | chr8.1:70404595-70404614 | MS.gene019537:intron | 55.0% | |
| GAGTGTCCGTGCTTCGTAGA+AGG | - | chr8.1:70404197-70404216 | None:intergenic | 55.0% | |
| GATTAGGCGTGTTCCGGTGT+CGG | + | chr8.1:70404221-70404240 | MS.gene019537:intron | 55.0% | |
| GGAAACAAACACAGCCCGTG+TGG | - | chr8.1:70403272-70403291 | None:intergenic | 55.0% | |
| TCCAGGATTGCAGTGGTGAC+AGG | + | chr8.1:70403289-70403308 | MS.gene019537:intron | 55.0% | |
| TCCTGTCACCACTGCAATCC+TGG | - | chr8.1:70403293-70403312 | None:intergenic | 55.0% | |
| TGAAGCACGGACACTGGACA+CGG | - | chr8.1:70404339-70404358 | None:intergenic | 55.0% | |
| ! | CACGGGCTGTGTTTGTTTCC+AGG | + | chr8.1:70403272-70403291 | MS.gene019537:intron | 55.0% |
| !! | ACCCACTTGGGTTGGTTTGG+TGG | - | chr8.1:70404600-70404619 | None:intergenic | 55.0% |
| ACACGACGCGTGTCCGACAC+CGG | - | chr8.1:70404237-70404256 | None:intergenic | 65.0% | |
| CACGGACACTGGACACGGCA+TGG | - | chr8.1:70404334-70404353 | None:intergenic | 65.0% | |
| GTGTCGGACACGCGTCGTGT+CGG | + | chr8.1:70404237-70404256 | MS.gene019537:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 70402994 | 70405956 | 70402994 | ID=MS.gene019537 |
| chr8.1 | mRNA | 70402994 | 70405956 | 70402994 | ID=MS.gene019537.t1;Parent=MS.gene019537 |
| chr8.1 | exon | 70402994 | 70403013 | 70402994 | ID=MS.gene019537.t1.exon1;Parent=MS.gene019537.t1 |
| chr8.1 | CDS | 70402994 | 70403013 | 70402994 | ID=cds.MS.gene019537.t1;Parent=MS.gene019537.t1 |
| chr8.1 | exon | 70403294 | 70403540 | 70403294 | ID=MS.gene019537.t1.exon2;Parent=MS.gene019537.t1 |
| chr8.1 | CDS | 70403294 | 70403540 | 70403294 | ID=cds.MS.gene019537.t1;Parent=MS.gene019537.t1 |
| chr8.1 | exon | 70404050 | 70404124 | 70404050 | ID=MS.gene019537.t1.exon3;Parent=MS.gene019537.t1 |
| chr8.1 | CDS | 70404050 | 70404124 | 70404050 | ID=cds.MS.gene019537.t1;Parent=MS.gene019537.t1 |
| chr8.1 | exon | 70404766 | 70404942 | 70404766 | ID=MS.gene019537.t1.exon4;Parent=MS.gene019537.t1 |
| chr8.1 | CDS | 70404766 | 70404942 | 70404766 | ID=cds.MS.gene019537.t1;Parent=MS.gene019537.t1 |
| chr8.1 | exon | 70405579 | 70405956 | 70405579 | ID=MS.gene019537.t1.exon5;Parent=MS.gene019537.t1 |
| chr8.1 | CDS | 70405579 | 70405956 | 70405579 | ID=cds.MS.gene019537.t1;Parent=MS.gene019537.t1 |
| Gene Sequence |
| Protein sequence |
