Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57564.t1 | RHN39977.1 | 90.3 | 299 | 29 | 0 | 1 | 299 | 51 | 349 | 3.50E-146 | 527.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57564.t1 | Q9M2E2 | 55.1 | 303 | 125 | 6 | 1 | 299 | 1 | 296 | 2.5e-84 | 313.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57564.t1 | G7LBT4 | 90.3 | 299 | 29 | 0 | 1 | 299 | 1 | 299 | 2.5e-146 | 527.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57564.t1 | MTR_8g031940 | 90.301 | 299 | 29 | 0 | 1 | 299 | 1 | 299 | 0.0 | 554 |
| MS.gene57564.t1 | MTR_8g031980 | 79.933 | 299 | 59 | 1 | 1 | 299 | 1 | 298 | 1.79e-175 | 487 |
| MS.gene57564.t1 | MTR_8g031960 | 79.932 | 294 | 57 | 2 | 7 | 299 | 8 | 300 | 1.00e-170 | 475 |
| MS.gene57564.t1 | MTR_8g031990 | 66.890 | 299 | 98 | 1 | 1 | 299 | 1 | 298 | 4.75e-145 | 410 |
| MS.gene57564.t1 | MTR_8g032000 | 66.221 | 299 | 100 | 1 | 1 | 299 | 1 | 298 | 1.45e-144 | 409 |
| MS.gene57564.t1 | MTR_8g032010 | 65.886 | 299 | 101 | 1 | 1 | 299 | 1 | 298 | 5.57e-144 | 407 |
| MS.gene57564.t1 | MTR_8g032020 | 65.217 | 299 | 102 | 2 | 2 | 299 | 3 | 300 | 1.37e-140 | 399 |
| MS.gene57564.t1 | MTR_7g076660 | 58.863 | 299 | 110 | 3 | 1 | 299 | 1 | 286 | 5.50e-124 | 356 |
| MS.gene57564.t1 | MTR_7g076660 | 59.044 | 293 | 107 | 3 | 7 | 299 | 8 | 287 | 3.71e-122 | 351 |
| MS.gene57564.t1 | MTR_7g076655 | 57.860 | 299 | 113 | 3 | 1 | 299 | 1 | 286 | 2.68e-121 | 349 |
| MS.gene57564.t1 | MTR_8g031600 | 56.478 | 301 | 126 | 3 | 1 | 299 | 1 | 298 | 1.47e-117 | 340 |
| MS.gene57564.t1 | MTR_8g031630 | 56.000 | 300 | 128 | 3 | 1 | 299 | 1 | 297 | 3.43e-117 | 339 |
| MS.gene57564.t1 | MTR_8g031610 | 55.743 | 296 | 126 | 4 | 5 | 299 | 3 | 294 | 2.51e-112 | 327 |
| MS.gene57564.t1 | MTR_8g031910 | 56.954 | 302 | 112 | 5 | 1 | 299 | 1 | 287 | 2.82e-111 | 323 |
| MS.gene57564.t1 | MTR_8g031900 | 53.512 | 299 | 133 | 3 | 1 | 299 | 1 | 293 | 8.73e-111 | 323 |
| MS.gene57564.t1 | MTR_8g031650 | 55.670 | 291 | 125 | 3 | 10 | 299 | 104 | 391 | 2.00e-110 | 325 |
| MS.gene57564.t1 | MTR_8g031650 | 58.252 | 103 | 42 | 1 | 169 | 270 | 1 | 103 | 1.36e-37 | 137 |
| MS.gene57564.t1 | MTR_7g076660 | 57.664 | 274 | 103 | 3 | 26 | 299 | 2 | 262 | 5.09e-110 | 320 |
| MS.gene57564.t1 | MTR_8g031650 | 55.670 | 291 | 125 | 3 | 10 | 299 | 270 | 557 | 1.17e-108 | 326 |
| MS.gene57564.t1 | MTR_8g031650 | 56.458 | 271 | 115 | 2 | 1 | 270 | 1 | 269 | 2.18e-103 | 313 |
| MS.gene57564.t1 | MTR_5g062280 | 52.843 | 299 | 137 | 3 | 1 | 299 | 1 | 295 | 5.13e-107 | 313 |
| MS.gene57564.t1 | MTR_7g076665 | 54.000 | 300 | 132 | 3 | 1 | 299 | 1 | 295 | 3.43e-105 | 308 |
| MS.gene57564.t1 | MTR_3g079320 | 50.662 | 302 | 138 | 6 | 5 | 299 | 9 | 306 | 8.37e-91 | 272 |
| MS.gene57564.t1 | MTR_7g106800 | 47.987 | 298 | 94 | 4 | 7 | 299 | 9 | 250 | 9.93e-85 | 256 |
| MS.gene57564.t1 | MTR_8g031850 | 44.816 | 299 | 121 | 4 | 1 | 299 | 1 | 255 | 5.74e-82 | 248 |
| MS.gene57564.t1 | MTR_8g032030 | 72.000 | 175 | 48 | 1 | 1 | 174 | 1 | 175 | 1.02e-79 | 241 |
| MS.gene57564.t1 | MTR_3g098470 | 40.136 | 294 | 138 | 6 | 9 | 291 | 37 | 303 | 2.18e-62 | 200 |
| MS.gene57564.t1 | MTR_5g083430 | 53.757 | 173 | 79 | 1 | 127 | 299 | 13 | 184 | 5.73e-61 | 192 |
| MS.gene57564.t1 | MTR_1g031180 | 39.116 | 294 | 141 | 8 | 9 | 291 | 42 | 308 | 1.24e-54 | 180 |
| MS.gene57564.t1 | MTR_4g087460 | 36.808 | 307 | 152 | 9 | 9 | 299 | 24 | 304 | 6.27e-52 | 173 |
| MS.gene57564.t1 | MTR_8g096060 | 37.415 | 294 | 143 | 9 | 9 | 291 | 39 | 302 | 5.68e-50 | 168 |
| MS.gene57564.t1 | MTR_4g105310 | 27.881 | 269 | 130 | 12 | 9 | 267 | 51 | 265 | 7.83e-12 | 64.7 |
| MS.gene57564.t1 | MTR_4g105310 | 27.070 | 314 | 151 | 14 | 9 | 298 | 51 | 310 | 2.02e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57564.t1 | AT3G61220 | 55.116 | 303 | 125 | 6 | 1 | 299 | 1 | 296 | 3.70e-113 | 329 |
| MS.gene57564.t1 | AT3G61220 | 55.556 | 297 | 121 | 6 | 7 | 299 | 14 | 303 | 1.17e-111 | 325 |
| MS.gene57564.t1 | AT3G61220 | 55.556 | 297 | 121 | 6 | 7 | 299 | 38 | 327 | 3.56e-111 | 325 |
| MS.gene57564.t1 | AT1G01800 | 55.593 | 295 | 125 | 5 | 7 | 299 | 5 | 295 | 4.27e-110 | 321 |
| MS.gene57564.t1 | AT2G24190 | 52.805 | 303 | 132 | 6 | 1 | 299 | 1 | 296 | 6.07e-108 | 315 |
| MS.gene57564.t1 | AT2G24190 | 53.199 | 297 | 128 | 6 | 7 | 299 | 12 | 301 | 3.61e-106 | 311 |
| MS.gene57564.t1 | AT1G01800 | 52.381 | 210 | 96 | 3 | 90 | 299 | 55 | 260 | 3.85e-72 | 223 |
| MS.gene57564.t1 | AT5G51030 | 37.134 | 307 | 155 | 8 | 4 | 299 | 35 | 314 | 6.06e-59 | 191 |
| MS.gene57564.t1 | AT5G61830 | 40.339 | 295 | 139 | 8 | 9 | 291 | 39 | 308 | 9.91e-57 | 186 |
| MS.gene57564.t1 | AT5G61830 | 40.339 | 295 | 139 | 8 | 9 | 291 | 39 | 308 | 9.91e-57 | 186 |
| MS.gene57564.t1 | AT3G59710 | 39.711 | 277 | 137 | 7 | 9 | 282 | 31 | 280 | 1.21e-54 | 180 |
| MS.gene57564.t1 | AT3G59710 | 39.711 | 277 | 137 | 7 | 9 | 282 | 21 | 270 | 1.43e-54 | 179 |
| MS.gene57564.t1 | AT3G59710 | 39.711 | 277 | 137 | 7 | 9 | 282 | 50 | 299 | 2.85e-54 | 179 |
| MS.gene57564.t1 | AT4G09750 | 25.170 | 294 | 155 | 10 | 10 | 292 | 47 | 286 | 3.92e-12 | 66.2 |
| MS.gene57564.t1 | AT5G50130 | 25.172 | 290 | 151 | 9 | 9 | 280 | 39 | 280 | 9.62e-11 | 62.0 |
Find 54 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATATCAAGTTTGCCAAAT+TGG | 0.158459 | 8.3:-62660505 | None:intergenic |
| AACCGTTAACAAACCGTTAT+TGG | 0.210322 | 8.3:-62662731 | None:intergenic |
| GTTAACAATGCAGGGATTAT+TGG | 0.223601 | 8.3:+62661030 | MS.gene57564:CDS |
| ATTTGGCAAACTTGATATTC+TGG | 0.229964 | 8.3:+62660508 | MS.gene57564:CDS |
| TGTTTGCAAACAAATTATTA+TGG | 0.282681 | 8.3:+62661709 | MS.gene57564:CDS |
| TGACAAAGAGTTTCTTAATC+TGG | 0.289168 | 8.3:+62661065 | MS.gene57564:CDS |
| TTTCTCTTCTGTAAGGTTAT+CGG | 0.295049 | 8.3:-62662509 | None:intergenic |
| GATGATACATTCACAATTCT+TGG | 0.302082 | 8.3:-62661784 | None:intergenic |
| GTGAATGTATCATCCACTTT+GGG | 0.326234 | 8.3:+62661793 | MS.gene57564:CDS |
| ATGCCCAATGGTAGTCCTTC+TGG | 0.326726 | 8.3:+62662790 | MS.gene57564:CDS |
| CAATGGCTGGCCTAAGACTT+TGG | 0.331360 | 8.3:+62662591 | MS.gene57564:CDS |
| ACTGGATCAAACAAAGGAAT+TGG | 0.344071 | 8.3:+62660296 | MS.gene57564:CDS |
| AATATCAAGTTTGCCAAATT+GGG | 0.350754 | 8.3:-62660504 | None:intergenic |
| CTCAGGTATGCAGTGGTGAC+TGG | 0.366863 | 8.3:+62660278 | MS.gene57564:intron |
| TTGGAAACACTCAAAGCTTC+TGG | 0.378249 | 8.3:+62660401 | MS.gene57564:CDS |
| ATCCACTTTGGGGCAGTTAG+AGG | 0.392630 | 8.3:+62661804 | MS.gene57564:CDS |
| TGCCAATAACGGTTTGTTAA+CGG | 0.401780 | 8.3:+62662729 | MS.gene57564:CDS |
| CATCTACTTTCTCTTCTGTA+AGG | 0.402130 | 8.3:-62662516 | None:intergenic |
| TTTCTAGAAGATTTCAAAGA+AGG | 0.405469 | 8.3:+62662553 | MS.gene57564:CDS |
| GAATTGGGTTTGAGATAGTA+AGG | 0.414626 | 8.3:+62660312 | MS.gene57564:CDS |
| AGATGGGAGAAACAGCAAAA+AGG | 0.416264 | 8.3:+62660053 | None:intergenic |
| ATATAAGCTCCCAAAGTCTT+AGG | 0.442458 | 8.3:-62662601 | None:intergenic |
| AATGGCTGGCCTAAGACTTT+GGG | 0.446503 | 8.3:+62662592 | MS.gene57564:CDS |
| CTGGATCAAACAAAGGAATT+GGG | 0.448357 | 8.3:+62660297 | MS.gene57564:CDS |
| TGTGAATGTATCATCCACTT+TGG | 0.452489 | 8.3:+62661792 | MS.gene57564:CDS |
| TCATTGCAGGTTAACAATGC+AGG | 0.478904 | 8.3:+62661021 | MS.gene57564:intron |
| AATTCGAGAACTTAATCAAA+AGG | 0.483295 | 8.3:-62662842 | None:intergenic |
| CATTAGATTATGACAATGGC+TGG | 0.489343 | 8.3:+62662578 | MS.gene57564:CDS |
| GTAAGGCAGTTAGCTTCAGC+TGG | 0.501587 | 8.3:+62660329 | MS.gene57564:CDS |
| ACAAAGACGTCTTCAAGCAT+TGG | 0.522718 | 8.3:+62660382 | MS.gene57564:CDS |
| CATTGCAGGTTAACAATGCA+GGG | 0.526650 | 8.3:+62661022 | MS.gene57564:intron |
| ATCTGGCTATCTACAACCGT+GGG | 0.533389 | 8.3:+62661082 | MS.gene57564:CDS |
| TGCATCAATAGTGTTTGCCC+TGG | 0.538598 | 8.3:+62662685 | MS.gene57564:CDS |
| AATCTGGCTATCTACAACCG+TGG | 0.539912 | 8.3:+62661081 | MS.gene57564:CDS |
| CAACTCCAGAGTATACCAAA+TGG | 0.540082 | 8.3:+62662460 | MS.gene57564:intron |
| GGTTTGTTAACGGTTGAAGA+AGG | 0.550234 | 8.3:+62662739 | MS.gene57564:CDS |
| ATGCCAGAAGGACTACCATT+GGG | 0.564515 | 8.3:-62662793 | None:intergenic |
| CATGCCAGAAGGACTACCAT+TGG | 0.571119 | 8.3:-62662794 | None:intergenic |
| ACAGATATAACTGCCAATAA+CGG | 0.574376 | 8.3:+62662718 | MS.gene57564:CDS |
| TGAGTTTCTCAGGTATGCAG+TGG | 0.581527 | 8.3:+62660271 | MS.gene57564:intron |
| TACCTCTAACTGCCCCAAAG+TGG | 0.586859 | 8.3:-62661806 | None:intergenic |
| AAAAGGAAGACATTTCAGTC+CGG | 0.588047 | 8.3:-62662825 | None:intergenic |
| ACACTATTGATGCATATCGT+AGG | 0.589944 | 8.3:-62662676 | None:intergenic |
| TTTGACAAAATGTGCAAGAG+AGG | 0.592711 | 8.3:-62660480 | None:intergenic |
| GGTTCATTAGATTATGACAA+TGG | 0.596060 | 8.3:+62662574 | MS.gene57564:CDS |
| ATATCTGTTATAGTATAACC+AGG | 0.600049 | 8.3:-62662703 | None:intergenic |
| CGGTAAAAGAACATGCCAGA+AGG | 0.603986 | 8.3:-62662805 | None:intergenic |
| TCCAGAGTATACCAAATGGA+TGG | 0.620884 | 8.3:+62662464 | MS.gene57564:intron |
| TGAATGTATCATCCACTTTG+GGG | 0.628075 | 8.3:+62661794 | MS.gene57564:CDS |
| AAGCTAGCACTAATGCCCAA+TGG | 0.672870 | 8.3:+62662778 | MS.gene57564:CDS |
| TCAAACATATGAATTAGCTG+AGG | 0.676154 | 8.3:+62661684 | MS.gene57564:CDS |
| GTGGTGACTGGATCAAACAA+AGG | 0.685249 | 8.3:+62660290 | MS.gene57564:CDS |
| TATCTGTTATAGTATAACCA+GGG | 0.717772 | 8.3:-62662702 | None:intergenic |
| TCTGGCTATCTACAACCGTG+GGG | 0.756741 | 8.3:+62661083 | MS.gene57564:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATGATTATAATCAT+AGG | - | chr8.3:62660156-62660175 | None:intergenic | 10.0% |
| !! | AAAAAAGTGAAAAATGAAAA+TGG | - | chr8.3:62660214-62660233 | None:intergenic | 15.0% |
| !! | AGAGAATGATAAAAAAAATA+TGG | - | chr8.3:62660801-62660820 | None:intergenic | 15.0% |
| !! | GTATGTTAATCATAAAATTT+GGG | - | chr8.3:62661417-62661436 | None:intergenic | 15.0% |
| !! | TTCACTTATAAAGATAATTT+GGG | - | chr8.3:62661345-62661364 | None:intergenic | 15.0% |
| !! | AAACTATGTGGTATTATTAA+TGG | + | chr8.3:62662299-62662318 | MS.gene57564:intron | 20.0% |
| !! | AAACTGAACAATAAATTTGA+CGG | - | chr8.3:62662018-62662037 | None:intergenic | 20.0% |
| !! | ATGAAAATTTCCATTAATTC+TGG | + | chr8.3:62661484-62661503 | MS.gene57564:intron | 20.0% |
| !! | CATGATATATGTTATGTAAA+TGG | + | chr8.3:62661538-62661557 | MS.gene57564:intron | 20.0% |
| !! | CTTCACTTATAAAGATAATT+TGG | - | chr8.3:62661346-62661365 | None:intergenic | 20.0% |
| !! | GGTATGTTAATCATAAAATT+TGG | - | chr8.3:62661418-62661437 | None:intergenic | 20.0% |
| !! | TGTTTGCAAACAAATTATTA+TGG | + | chr8.3:62661709-62661728 | MS.gene57564:CDS | 20.0% |
| !! | TTGTAACAAAATATAACAAG+TGG | - | chr8.3:62660869-62660888 | None:intergenic | 20.0% |
| !!! | AAAACTTAGTCTTATAAAAC+CGG | - | chr8.3:62661388-62661407 | None:intergenic | 20.0% |
| !!! | AAATTTTCATTTCTTTATCG+AGG | - | chr8.3:62661474-62661493 | None:intergenic | 20.0% |
| !!! | AACCTATCAAATTGATTTAA+TGG | - | chr8.3:62660916-62660935 | None:intergenic | 20.0% |
| !!! | AATATGCCATTTATTTTTGT+TGG | - | chr8.3:62661596-62661615 | None:intergenic | 20.0% |
| !!! | TAAGTTAGAATCTATTTTAG+AGG | - | chr8.3:62661954-62661973 | None:intergenic | 20.0% |
| !!! | TGTTTTTCTGTTTATACTTA+AGG | - | chr8.3:62662166-62662185 | None:intergenic | 20.0% |
| !!! | TTTTGAGTTAAATAACACAA+TGG | + | chr8.3:62660611-62660630 | MS.gene57564:intron | 20.0% |
| ! | AATACAACAAATTGAAATCG+CGG | + | chr8.3:62660678-62660697 | MS.gene57564:intron | 25.0% |
| ! | AATATCAAGTTTGCCAAATT+GGG | - | chr8.3:62660507-62660526 | None:intergenic | 25.0% |
| ! | AATCCAAGATACACTTATTA+AGG | - | chr8.3:62661849-62661868 | None:intergenic | 25.0% |
| ! | AGAAACTATGTGAATATAAG+CGG | + | chr8.3:62662357-62662376 | MS.gene57564:intron | 25.0% |
| ! | ATATCTGTTATAGTATAACC+AGG | - | chr8.3:62662706-62662725 | None:intergenic | 25.0% |
| ! | ATCTTGCCAACAAAAATAAA+TGG | + | chr8.3:62661587-62661606 | MS.gene57564:intron | 25.0% |
| ! | ATTGCAAATAATGACTAACA+AGG | - | chr8.3:62660776-62660795 | None:intergenic | 25.0% |
| ! | CTGGCTTATTATGTTATATT+CGG | - | chr8.3:62661182-62661201 | None:intergenic | 25.0% |
| ! | CTTATAAAGATAATTTGGGT+TGG | - | chr8.3:62661341-62661360 | None:intergenic | 25.0% |
| ! | GTTAATCATAAAATTTGGGT+TGG | - | chr8.3:62661413-62661432 | None:intergenic | 25.0% |
| ! | TAGAACATCTGATAAGATAT+TGG | + | chr8.3:62660565-62660584 | MS.gene57564:intron | 25.0% |
| ! | TATCTGTTATAGTATAACCA+GGG | - | chr8.3:62662705-62662724 | None:intergenic | 25.0% |
| ! | TGAAGACAACAAATTAATCA+TGG | + | chr8.3:62661903-62661922 | MS.gene57564:intron | 25.0% |
| ! | TGCATATATAGAAAATGAGA+AGG | - | chr8.3:62660980-62660999 | None:intergenic | 25.0% |
| ! | TGCCATTAAATCAATTTGAT+AGG | + | chr8.3:62660911-62660930 | MS.gene57564:intron | 25.0% |
| ! | TGGCTTATTATGTTATATTC+GGG | - | chr8.3:62661181-62661200 | None:intergenic | 25.0% |
| ! | TGTCGCAATATAAAGATTTA+TGG | - | chr8.3:62660115-62660134 | None:intergenic | 25.0% |
| !! | AATCCGTTTCCAAATTTTAA+AGG | - | chr8.3:62662195-62662214 | None:intergenic | 25.0% |
| !! | TTGGTGAATCAGATAATTTT+AGG | - | chr8.3:62661768-62661787 | None:intergenic | 25.0% |
| !! | TTTCTAGAAGATTTCAAAGA+AGG | + | chr8.3:62662553-62662572 | MS.gene57564:CDS | 25.0% |
| !!! | AAATTTCTTGATAGCTTTGA+AGG | + | chr8.3:62660944-62660963 | MS.gene57564:intron | 25.0% |
| !!! | AATTTCTTGATAGCTTTGAA+GGG | + | chr8.3:62660945-62660964 | MS.gene57564:intron | 25.0% |
| !!! | CAAACTTAGTCTTATAAAAC+CGG | - | chr8.3:62661316-62661335 | None:intergenic | 25.0% |
| !!! | GTATGATTTTTTCGCATTTA+CGG | + | chr8.3:62660530-62660549 | MS.gene57564:intron | 25.0% |
| !!! | GTCATGATGAAAATTGATTT+TGG | - | chr8.3:62662063-62662082 | None:intergenic | 25.0% |
| !!! | TGAATCAGATAATTTTAGGA+GGG | - | chr8.3:62661764-62661783 | None:intergenic | 25.0% |
| !!! | TTGCCTTTAAAATTTGGAAA+CGG | + | chr8.3:62662189-62662208 | MS.gene57564:intron | 25.0% |
| AAAGGATCAAAACATGAAGA+AGG | - | chr8.3:62660240-62660259 | None:intergenic | 30.0% | |
| AAATCCTGGTCATAATGTTT+AGG | + | chr8.3:62662106-62662125 | MS.gene57564:intron | 30.0% | |
| AAGATACACTTATTAAGGCA+AGG | - | chr8.3:62661844-62661863 | None:intergenic | 30.0% | |
| AAGGTTTAACTCTTCCATAA+GGG | - | chr8.3:62661872-62661891 | None:intergenic | 30.0% | |
| ACAGATATAACTGCCAATAA+CGG | + | chr8.3:62662718-62662737 | MS.gene57564:CDS | 30.0% | |
| ACATCTGATAAGATATTGGA+CGG | + | chr8.3:62660569-62660588 | MS.gene57564:intron | 30.0% | |
| AGACATTCTCGACTATTAAT+TGG | - | chr8.3:62662271-62662290 | None:intergenic | 30.0% | |
| ATGTCACAACAAAACATACA+AGG | - | chr8.3:62660736-62660755 | None:intergenic | 30.0% | |
| ATTTGGCAAACTTGATATTC+TGG | + | chr8.3:62660508-62660527 | MS.gene57564:CDS | 30.0% | |
| CAAATGCTTGAATATGTATC+TGG | + | chr8.3:62660838-62660857 | MS.gene57564:intron | 30.0% | |
| CAGATACATATTCAAGCATT+TGG | - | chr8.3:62660840-62660859 | None:intergenic | 30.0% | |
| GAATATCAAGTTTGCCAAAT+TGG | - | chr8.3:62660508-62660527 | None:intergenic | 30.0% | |
| GATGATACATTCACAATTCT+TGG | - | chr8.3:62661787-62661806 | None:intergenic | 30.0% | |
| GGTTCATTAGATTATGACAA+TGG | + | chr8.3:62662574-62662593 | MS.gene57564:CDS | 30.0% | |
| GTAAATGGTCTCATTGTTAA+TGG | + | chr8.3:62661553-62661572 | MS.gene57564:intron | 30.0% | |
| TAACAAAAGTTGTTCATTGC+AGG | + | chr8.3:62661008-62661027 | MS.gene57564:intron | 30.0% | |
| TAAGGTTTAACTCTTCCATA+AGG | - | chr8.3:62661873-62661892 | None:intergenic | 30.0% | |
| TAGATTGACATAAAGCATAG+TGG | - | chr8.3:62661512-62661531 | None:intergenic | 30.0% | |
| TATACCTAAACATTATGACC+AGG | - | chr8.3:62662113-62662132 | None:intergenic | 30.0% | |
| TCAAACATATGAATTAGCTG+AGG | + | chr8.3:62661684-62661703 | MS.gene57564:CDS | 30.0% | |
| TGACAAAGAGTTTCTTAATC+TGG | + | chr8.3:62661065-62661084 | MS.gene57564:CDS | 30.0% | |
| TTACGAGATAATGATAAAGC+TGG | - | chr8.3:62662397-62662416 | None:intergenic | 30.0% | |
| TTGACGGTAAAAATCATGTT+TGG | - | chr8.3:62662002-62662021 | None:intergenic | 30.0% | |
| TTGCCTTAATAAGTGTATCT+TGG | + | chr8.3:62661843-62661862 | MS.gene57564:intron | 30.0% | |
| TTTCAATGTGGGATTCATAA+CGG | - | chr8.3:62661149-62661168 | None:intergenic | 30.0% | |
| TTTCTCTTCTGTAAGGTTAT+CGG | - | chr8.3:62662512-62662531 | None:intergenic | 30.0% | |
| ! | CATTTTGTCAAATCCCAATT+TGG | + | chr8.3:62660491-62660510 | MS.gene57564:CDS | 30.0% |
| ! | GTGAATCAGATAATTTTAGG+AGG | - | chr8.3:62661765-62661784 | None:intergenic | 30.0% |
| ! | TATTATCTTCTGATAATGCC+TGG | - | chr8.3:62661648-62661667 | None:intergenic | 30.0% |
| !! | ACAAGCTTGCCTTTAAAATT+TGG | + | chr8.3:62662183-62662202 | MS.gene57564:intron | 30.0% |
| !! | CGGTTTTATAAGACTAAGTT+TGG | + | chr8.3:62661314-62661333 | MS.gene57564:intron | 30.0% |
| !! | GAATCAGATAATTTTAGGAG+GGG | - | chr8.3:62661763-62661782 | None:intergenic | 30.0% |
| !! | TCTTGACCATTGATTTAGAT+AGG | - | chr8.3:62662241-62662260 | None:intergenic | 30.0% |
| !! | TGTCTTCAGAATCACTTTTA+AGG | - | chr8.3:62661891-62661910 | None:intergenic | 30.0% |
| !!! | TCTTCATGTTTTGATCCTTT+TGG | + | chr8.3:62660240-62660259 | MS.gene57564:intron | 30.0% |
| AAAAGGAAGACATTTCAGTC+CGG | - | chr8.3:62662828-62662847 | None:intergenic | 35.0% | |
| AACCGTTAACAAACCGTTAT+TGG | - | chr8.3:62662734-62662753 | None:intergenic | 35.0% | |
| AAGGAATAACAAAAGACGCA+AGG | - | chr8.3:62660717-62660736 | None:intergenic | 35.0% | |
| AAGGTTACCAGACATATTGA+TGG | - | chr8.3:62662147-62662166 | None:intergenic | 35.0% | |
| AATAGTCGAGAATGTCTGTT+GGG | + | chr8.3:62662274-62662293 | MS.gene57564:intron | 35.0% | |
| ACACTATTGATGCATATCGT+AGG | - | chr8.3:62662679-62662698 | None:intergenic | 35.0% | |
| ACGGTAAAAATCATGTTTGG+AGG | - | chr8.3:62661999-62662018 | None:intergenic | 35.0% | |
| ACTGGATCAAACAAAGGAAT+TGG | + | chr8.3:62660296-62660315 | MS.gene57564:CDS | 35.0% | |
| ATATAAGCTCCCAAAGTCTT+AGG | - | chr8.3:62662604-62662623 | None:intergenic | 35.0% | |
| CATCTACTTTCTCTTCTGTA+AGG | - | chr8.3:62662519-62662538 | None:intergenic | 35.0% | |
| CATTAGATTATGACAATGGC+TGG | + | chr8.3:62662578-62662597 | MS.gene57564:CDS | 35.0% | |
| CTGGATCAAACAAAGGAATT+GGG | + | chr8.3:62660297-62660316 | MS.gene57564:CDS | 35.0% | |
| GATAATGATAAAGCTGGTGA+TGG | - | chr8.3:62662391-62662410 | None:intergenic | 35.0% | |
| GTGAATGTATCATCCACTTT+GGG | + | chr8.3:62661793-62661812 | MS.gene57564:CDS | 35.0% | |
| GTTAACAATGCAGGGATTAT+TGG | + | chr8.3:62661030-62661049 | MS.gene57564:CDS | 35.0% | |
| TAATAGTCGAGAATGTCTGT+TGG | + | chr8.3:62662273-62662292 | MS.gene57564:intron | 35.0% | |
| TGAATGTATCATCCACTTTG+GGG | + | chr8.3:62661794-62661813 | MS.gene57564:CDS | 35.0% | |
| TGACACAATTTATCCTTTCC+AGG | + | chr8.3:62661627-62661646 | MS.gene57564:intron | 35.0% | |
| TGACGTCCTATCTAAATCAA+TGG | + | chr8.3:62662232-62662251 | MS.gene57564:intron | 35.0% | |
| TGTGAATGTATCATCCACTT+TGG | + | chr8.3:62661792-62661811 | MS.gene57564:CDS | 35.0% | |
| TTTGACAAAATGTGCAAGAG+AGG | - | chr8.3:62660483-62660502 | None:intergenic | 35.0% | |
| ! | CATAGTGGAACCAGAATTAA+TGG | - | chr8.3:62661497-62661516 | None:intergenic | 35.0% |
| ! | GAATTGGGTTTGAGATAGTA+AGG | + | chr8.3:62660312-62660331 | MS.gene57564:CDS | 35.0% |
| ! | GGTCTTATCTCTTTCAATGT+GGG | - | chr8.3:62661160-62661179 | None:intergenic | 35.0% |
| ! | TTTTCGCATTTACGGTAGTT+GGG | + | chr8.3:62660538-62660557 | MS.gene57564:intron | 35.0% |
| ! | TTTTTCGCATTTACGGTAGT+TGG | + | chr8.3:62660537-62660556 | MS.gene57564:intron | 35.0% |
| !! | TGCCAATAACGGTTTGTTAA+CGG | + | chr8.3:62662729-62662748 | MS.gene57564:CDS | 35.0% |
| !!! | GTTTTGATCCTTTTGGTGTT+GGG | + | chr8.3:62660247-62660266 | MS.gene57564:intron | 35.0% |
| !!! | TGTTTTGATCCTTTTGGTGT+TGG | + | chr8.3:62660246-62660265 | MS.gene57564:intron | 35.0% |
| AAACTCAACCCAACACCAAA+AGG | - | chr8.3:62660258-62660277 | None:intergenic | 40.0% | |
| AAAGACGCAAGGTAAAGCTA+AGG | - | chr8.3:62660706-62660725 | None:intergenic | 40.0% | |
| AAGACGCAAGGTAAAGCTAA+GGG | - | chr8.3:62660705-62660724 | None:intergenic | 40.0% | |
| ACAAAGACGTCTTCAAGCAT+TGG | + | chr8.3:62660382-62660401 | MS.gene57564:CDS | 40.0% | |
| ACAGTCAGTATGTTACAAGC+CGG | + | chr8.3:62661294-62661313 | MS.gene57564:intron | 40.0% | |
| ACATCTGCATATTTACCCCA+CGG | - | chr8.3:62661101-62661120 | None:intergenic | 40.0% | |
| CAACTCCAGAGTATACCAAA+TGG | + | chr8.3:62662460-62662479 | MS.gene57564:intron | 40.0% | |
| CACACACTAAAACGAAATCC+TGG | + | chr8.3:62662092-62662111 | MS.gene57564:intron | 40.0% | |
| CATTGCAGGTTAACAATGCA+GGG | + | chr8.3:62661022-62661041 | MS.gene57564:intron | 40.0% | |
| CGATAGTCAATATCGACCAT+TGG | - | chr8.3:62662335-62662354 | None:intergenic | 40.0% | |
| GTGTATCTTGGATTCCCTTA+TGG | + | chr8.3:62661855-62661874 | MS.gene57564:intron | 40.0% | |
| TCATTGCAGGTTAACAATGC+AGG | + | chr8.3:62661021-62661040 | MS.gene57564:intron | 40.0% | |
| TCCAGAGTATACCAAATGGA+TGG | + | chr8.3:62662464-62662483 | MS.gene57564:intron | 40.0% | |
| TTGGAAACACTCAAAGCTTC+TGG | + | chr8.3:62660401-62660420 | MS.gene57564:CDS | 40.0% | |
| ! | AAATTTGGAAACGGATTCGC+AGG | + | chr8.3:62662198-62662217 | MS.gene57564:intron | 40.0% |
| ! | AATTTGGAAACGGATTCGCA+GGG | + | chr8.3:62662199-62662218 | MS.gene57564:intron | 40.0% |
| ! | CTTCTGGCATGTTCTTTTAC+CGG | + | chr8.3:62662806-62662825 | MS.gene57564:CDS | 40.0% |
| ! | GGGTCTTATCTCTTTCAATG+TGG | - | chr8.3:62661161-62661180 | None:intergenic | 40.0% |
| ! | TCTTCTGATAATGCCTGGAA+AGG | - | chr8.3:62661643-62661662 | None:intergenic | 40.0% |
| !! | AAGCTTTTTGGCCATCCATT+TGG | - | chr8.3:62662478-62662497 | None:intergenic | 40.0% |
| !! | GGTTTGTTAACGGTTGAAGA+AGG | + | chr8.3:62662739-62662758 | MS.gene57564:CDS | 40.0% |
| AAGCTAGCACTAATGCCCAA+TGG | + | chr8.3:62662778-62662797 | MS.gene57564:CDS | 45.0% | |
| AATCTGGCTATCTACAACCG+TGG | + | chr8.3:62661081-62661100 | MS.gene57564:CDS | 45.0% | |
| ATCTGGCTATCTACAACCGT+GGG | + | chr8.3:62661082-62661101 | MS.gene57564:CDS | 45.0% | |
| ATGCCAGAAGGACTACCATT+GGG | - | chr8.3:62662796-62662815 | None:intergenic | 45.0% | |
| CGGTAAAAGAACATGCCAGA+AGG | - | chr8.3:62662808-62662827 | None:intergenic | 45.0% | |
| CTCGTCTCATTGATCTGAGT+TGG | - | chr8.3:62661250-62661269 | None:intergenic | 45.0% | |
| GCAGTACTCATCTCACAAGT+CGG | + | chr8.3:62661203-62661222 | MS.gene57564:intron | 45.0% | |
| GCCATCCATTTGGTATACTC+TGG | - | chr8.3:62662468-62662487 | None:intergenic | 45.0% | |
| GCTTTCGCCATCAATATGTC+TGG | + | chr8.3:62662137-62662156 | MS.gene57564:intron | 45.0% | |
| GGATGGCCAAAAAGCTTCTT+CGG | + | chr8.3:62662481-62662500 | MS.gene57564:CDS | 45.0% | |
| GTCTGTTGGGAGAAACTATG+TGG | + | chr8.3:62662287-62662306 | MS.gene57564:intron | 45.0% | |
| GTGGTGACTGGATCAAACAA+AGG | + | chr8.3:62660290-62660309 | MS.gene57564:CDS | 45.0% | |
| TGAGTTTCTCAGGTATGCAG+TGG | + | chr8.3:62660271-62660290 | MS.gene57564:intron | 45.0% | |
| TGCATCAATAGTGTTTGCCC+TGG | + | chr8.3:62662685-62662704 | MS.gene57564:CDS | 45.0% | |
| ! | GCTTCACCGAAGAAGCTTTT+TGG | - | chr8.3:62662490-62662509 | None:intergenic | 45.0% |
| ! | TAATGGACGCGAGAAACCAA+TGG | + | chr8.3:62662316-62662335 | MS.gene57564:intron | 45.0% |
| ! | TTGTGAGATGAGTACTGCTC+TGG | - | chr8.3:62661201-62661220 | None:intergenic | 45.0% |
| !! | AATGGCTGGCCTAAGACTTT+GGG | + | chr8.3:62662592-62662611 | MS.gene57564:CDS | 45.0% |
| !! | CGAGTCGTCTTAACTTGTTC+AGG | + | chr8.3:62660639-62660658 | MS.gene57564:intron | 45.0% |
| !! | AAATTTAATAAAAATTTAGA+GGG | - | chr8.3:62661439-62661458 | None:intergenic | 5.0% |
| !! | TAAATTTAATAAAAATTTAG+AGG | - | chr8.3:62661440-62661459 | None:intergenic | 5.0% |
| !!! | AAAATATAACAATATTTTAA+TGG | - | chr8.3:62660184-62660203 | None:intergenic | 5.0% |
| ATGCCCAATGGTAGTCCTTC+TGG | + | chr8.3:62662790-62662809 | MS.gene57564:CDS | 50.0% | |
| CATGCCAGAAGGACTACCAT+TGG | - | chr8.3:62662797-62662816 | None:intergenic | 50.0% | |
| TACCTCTAACTGCCCCAAAG+TGG | - | chr8.3:62661809-62661828 | None:intergenic | 50.0% | |
| TCTGGCTATCTACAACCGTG+GGG | + | chr8.3:62661083-62661102 | MS.gene57564:CDS | 50.0% | |
| ! | GTAAGGCAGTTAGCTTCAGC+TGG | + | chr8.3:62660329-62660348 | MS.gene57564:CDS | 50.0% |
| !! | ATCCACTTTGGGGCAGTTAG+AGG | + | chr8.3:62661804-62661823 | MS.gene57564:CDS | 50.0% |
| !! | CAATGGCTGGCCTAAGACTT+TGG | + | chr8.3:62662591-62662610 | MS.gene57564:CDS | 50.0% |
| !! | GGTGTTGGGTTGAGTTTCTC+AGG | + | chr8.3:62660261-62660280 | MS.gene57564:intron | 50.0% |
| CTCAGGTATGCAGTGGTGAC+TGG | + | chr8.3:62660278-62660297 | MS.gene57564:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 62660055 | 62662849 | 62660055 | ID=MS.gene57564 |
| chr8.3 | mRNA | 62660055 | 62662849 | 62660055 | ID=MS.gene57564.t1;Parent=MS.gene57564 |
| chr8.3 | exon | 62660055 | 62660074 | 62660055 | ID=MS.gene57564.t1.exon1;Parent=MS.gene57564.t1 |
| chr8.3 | CDS | 62660055 | 62660074 | 62660055 | ID=cds.MS.gene57564.t1;Parent=MS.gene57564.t1 |
| chr8.3 | exon | 62660283 | 62660529 | 62660283 | ID=MS.gene57564.t1.exon2;Parent=MS.gene57564.t1 |
| chr8.3 | CDS | 62660283 | 62660529 | 62660283 | ID=cds.MS.gene57564.t1;Parent=MS.gene57564.t1 |
| chr8.3 | exon | 62661030 | 62661104 | 62661030 | ID=MS.gene57564.t1.exon3;Parent=MS.gene57564.t1 |
| chr8.3 | CDS | 62661030 | 62661104 | 62661030 | ID=cds.MS.gene57564.t1;Parent=MS.gene57564.t1 |
| chr8.3 | exon | 62661649 | 62661825 | 62661649 | ID=MS.gene57564.t1.exon4;Parent=MS.gene57564.t1 |
| chr8.3 | CDS | 62661649 | 62661825 | 62661649 | ID=cds.MS.gene57564.t1;Parent=MS.gene57564.t1 |
| chr8.3 | exon | 62662469 | 62662849 | 62662469 | ID=MS.gene57564.t1.exon5;Parent=MS.gene57564.t1 |
| chr8.3 | CDS | 62662469 | 62662849 | 62662469 | ID=cds.MS.gene57564.t1;Parent=MS.gene57564.t1 |
| Gene Sequence |
| Protein sequence |
