Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58348.t1 | RHN39977.1 | 89.7 | 301 | 29 | 1 | 1 | 301 | 51 | 349 | 1.50E-144 | 522.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58348.t1 | Q9M2E2 | 54.4 | 305 | 126 | 6 | 1 | 301 | 1 | 296 | 3.3e-84 | 313.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58348.t1 | G7LBT4 | 89.7 | 301 | 29 | 1 | 1 | 301 | 1 | 299 | 1.1e-144 | 522.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58348.t1 | MTR_8g031940 | 89.701 | 301 | 29 | 1 | 1 | 301 | 1 | 299 | 0.0 | 548 |
| MS.gene58348.t1 | MTR_8g031980 | 79.734 | 301 | 58 | 1 | 1 | 301 | 1 | 298 | 4.45e-176 | 488 |
| MS.gene58348.t1 | MTR_8g031960 | 79.730 | 296 | 56 | 2 | 7 | 301 | 8 | 300 | 1.81e-171 | 477 |
| MS.gene58348.t1 | MTR_8g031990 | 66.777 | 301 | 97 | 1 | 1 | 301 | 1 | 298 | 1.46e-145 | 411 |
| MS.gene58348.t1 | MTR_8g032000 | 66.113 | 301 | 99 | 1 | 1 | 301 | 1 | 298 | 4.48e-144 | 407 |
| MS.gene58348.t1 | MTR_8g032010 | 65.781 | 301 | 100 | 1 | 1 | 301 | 1 | 298 | 9.53e-144 | 406 |
| MS.gene58348.t1 | MTR_8g032020 | 65.116 | 301 | 101 | 2 | 2 | 301 | 3 | 300 | 3.55e-140 | 397 |
| MS.gene58348.t1 | MTR_7g076660 | 58.804 | 301 | 109 | 3 | 1 | 301 | 1 | 286 | 7.55e-124 | 355 |
| MS.gene58348.t1 | MTR_7g076660 | 58.983 | 295 | 106 | 3 | 7 | 301 | 8 | 287 | 6.13e-122 | 351 |
| MS.gene58348.t1 | MTR_7g076655 | 57.807 | 301 | 112 | 3 | 1 | 301 | 1 | 286 | 7.00e-121 | 348 |
| MS.gene58348.t1 | MTR_8g031600 | 56.766 | 303 | 124 | 3 | 1 | 301 | 1 | 298 | 1.98e-119 | 345 |
| MS.gene58348.t1 | MTR_8g031630 | 55.629 | 302 | 128 | 4 | 1 | 301 | 1 | 297 | 2.04e-115 | 335 |
| MS.gene58348.t1 | MTR_8g031910 | 57.237 | 304 | 110 | 5 | 1 | 301 | 1 | 287 | 4.15e-113 | 328 |
| MS.gene58348.t1 | MTR_8g031610 | 56.040 | 298 | 124 | 4 | 5 | 301 | 3 | 294 | 4.67e-113 | 328 |
| MS.gene58348.t1 | MTR_8g031900 | 53.488 | 301 | 132 | 3 | 1 | 301 | 1 | 293 | 2.48e-111 | 324 |
| MS.gene58348.t1 | MTR_7g076660 | 57.609 | 276 | 102 | 3 | 26 | 301 | 2 | 262 | 5.13e-110 | 320 |
| MS.gene58348.t1 | MTR_8g031650 | 55.290 | 293 | 125 | 4 | 10 | 301 | 104 | 391 | 8.91e-109 | 321 |
| MS.gene58348.t1 | MTR_8g031650 | 56.190 | 105 | 43 | 2 | 169 | 272 | 1 | 103 | 5.87e-35 | 130 |
| MS.gene58348.t1 | MTR_8g031650 | 55.290 | 293 | 125 | 4 | 10 | 301 | 270 | 557 | 7.93e-107 | 322 |
| MS.gene58348.t1 | MTR_8g031650 | 56.044 | 273 | 115 | 3 | 1 | 272 | 1 | 269 | 1.12e-101 | 308 |
| MS.gene58348.t1 | MTR_5g062280 | 52.824 | 301 | 136 | 3 | 1 | 301 | 1 | 295 | 1.63e-106 | 312 |
| MS.gene58348.t1 | MTR_7g076665 | 53.974 | 302 | 131 | 3 | 1 | 301 | 1 | 295 | 2.33e-105 | 309 |
| MS.gene58348.t1 | MTR_3g079320 | 50.495 | 303 | 139 | 5 | 5 | 301 | 9 | 306 | 7.55e-91 | 273 |
| MS.gene58348.t1 | MTR_7g106800 | 48.333 | 300 | 92 | 4 | 7 | 301 | 9 | 250 | 3.36e-85 | 257 |
| MS.gene58348.t1 | MTR_8g031850 | 44.850 | 301 | 120 | 4 | 1 | 301 | 1 | 255 | 1.77e-83 | 252 |
| MS.gene58348.t1 | MTR_8g032030 | 72.571 | 175 | 47 | 1 | 1 | 174 | 1 | 175 | 6.18e-81 | 244 |
| MS.gene58348.t1 | MTR_3g098470 | 40.203 | 296 | 137 | 6 | 9 | 293 | 37 | 303 | 8.05e-64 | 204 |
| MS.gene58348.t1 | MTR_5g083430 | 53.143 | 175 | 79 | 1 | 127 | 301 | 13 | 184 | 4.40e-60 | 190 |
| MS.gene58348.t1 | MTR_1g031180 | 39.189 | 296 | 140 | 8 | 9 | 293 | 42 | 308 | 4.00e-55 | 181 |
| MS.gene58348.t1 | MTR_4g087460 | 36.893 | 309 | 151 | 9 | 9 | 301 | 24 | 304 | 3.43e-53 | 176 |
| MS.gene58348.t1 | MTR_8g096060 | 37.838 | 296 | 141 | 9 | 9 | 293 | 39 | 302 | 1.80e-51 | 172 |
| MS.gene58348.t1 | MTR_4g105310 | 27.215 | 316 | 150 | 14 | 9 | 300 | 51 | 310 | 1.45e-11 | 64.7 |
| MS.gene58348.t1 | MTR_4g105310 | 27.675 | 271 | 130 | 12 | 9 | 269 | 51 | 265 | 2.89e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58348.t1 | AT3G61220 | 54.426 | 305 | 126 | 6 | 1 | 301 | 1 | 296 | 9.75e-113 | 328 |
| MS.gene58348.t1 | AT3G61220 | 54.849 | 299 | 122 | 6 | 7 | 301 | 14 | 303 | 3.93e-111 | 324 |
| MS.gene58348.t1 | AT3G61220 | 54.849 | 299 | 122 | 6 | 7 | 301 | 38 | 327 | 1.23e-110 | 323 |
| MS.gene58348.t1 | AT1G01800 | 55.219 | 297 | 125 | 5 | 7 | 301 | 5 | 295 | 5.66e-110 | 321 |
| MS.gene58348.t1 | AT2G24190 | 52.787 | 305 | 131 | 6 | 1 | 301 | 1 | 296 | 2.98e-109 | 319 |
| MS.gene58348.t1 | AT2G24190 | 53.177 | 299 | 127 | 6 | 7 | 301 | 12 | 301 | 1.87e-107 | 315 |
| MS.gene58348.t1 | AT1G01800 | 51.415 | 212 | 97 | 3 | 90 | 301 | 55 | 260 | 5.00e-71 | 220 |
| MS.gene58348.t1 | AT5G51030 | 37.540 | 309 | 153 | 8 | 4 | 301 | 35 | 314 | 3.53e-60 | 194 |
| MS.gene58348.t1 | AT5G61830 | 40.741 | 297 | 137 | 8 | 9 | 293 | 39 | 308 | 1.82e-58 | 190 |
| MS.gene58348.t1 | AT5G61830 | 40.741 | 297 | 137 | 8 | 9 | 293 | 39 | 308 | 1.82e-58 | 190 |
| MS.gene58348.t1 | AT3G59710 | 39.590 | 293 | 144 | 8 | 9 | 297 | 31 | 294 | 3.30e-56 | 184 |
| MS.gene58348.t1 | AT3G59710 | 39.590 | 293 | 144 | 8 | 9 | 297 | 21 | 284 | 3.71e-56 | 183 |
| MS.gene58348.t1 | AT3G59710 | 39.590 | 293 | 144 | 8 | 9 | 297 | 50 | 313 | 9.00e-56 | 183 |
| MS.gene58348.t1 | AT4G09750 | 25.170 | 294 | 157 | 10 | 10 | 294 | 47 | 286 | 1.20e-11 | 64.7 |
Find 54 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATATCAAGTTTGCCAAAT+TGG | 0.158459 | 8.2:-66222184 | None:intergenic |
| AACCGTTAACAAACCGTTAT+TGG | 0.210322 | 8.2:-66224416 | None:intergenic |
| GTTAACAATGCAGGGATTAT+TGG | 0.223601 | 8.2:+66222709 | MS.gene58348:CDS |
| ATTTGGCAAACTTGATATTC+TGG | 0.229964 | 8.2:+66222187 | MS.gene58348:CDS |
| TGTTTGCAAACAAATTATTA+TGG | 0.282681 | 8.2:+66223388 | MS.gene58348:CDS |
| TGACAAAGAGTTTCTTAATC+TGG | 0.289168 | 8.2:+66222744 | MS.gene58348:CDS |
| TTTCTCTTCTGTAAGGTTAT+CGG | 0.295049 | 8.2:-66224188 | None:intergenic |
| GATGATACATTCACAATTCT+TGG | 0.302082 | 8.2:-66223463 | None:intergenic |
| GTGAATGTATCATCCACTTT+GGG | 0.326234 | 8.2:+66223472 | MS.gene58348:CDS |
| CAATGGCTGGCCTAAGACTT+TGG | 0.331360 | 8.2:+66224276 | MS.gene58348:CDS |
| ATTCCCAATGGTAGTCCTTC+TGG | 0.337637 | 8.2:+66224475 | MS.gene58348:CDS |
| ACTGGATCAAACAAAGGAAT+TGG | 0.344071 | 8.2:+66221975 | MS.gene58348:CDS |
| AATATCAAGTTTGCCAAATT+GGG | 0.350754 | 8.2:-66222183 | None:intergenic |
| CTCAGGTATGCAGTGGTGAC+TGG | 0.366863 | 8.2:+66221957 | MS.gene58348:intron |
| TTGGAAACACTCAAAGCTTC+TGG | 0.378249 | 8.2:+66222080 | MS.gene58348:CDS |
| ATCCACTTTGGGGCAGTTAG+AGG | 0.392630 | 8.2:+66223483 | MS.gene58348:CDS |
| TGCCAATAACGGTTTGTTAA+CGG | 0.401780 | 8.2:+66224414 | MS.gene58348:CDS |
| CATCTACTTTCTCTTCTGTA+AGG | 0.402130 | 8.2:-66224195 | None:intergenic |
| TTTCTAGAAGATTTCAAAGA+AGG | 0.405469 | 8.2:+66224232 | MS.gene58348:CDS |
| AGATGGGAGAAACTGCAAAA+AGG | 0.413781 | 8.2:+66221732 | None:intergenic |
| GAATTGGGTTTGAGATAGTA+AGG | 0.414626 | 8.2:+66221991 | MS.gene58348:CDS |
| ACACTATTGATGCATATAGT+AGG | 0.433012 | 8.2:-66224361 | None:intergenic |
| ATATAAGCTCCCAAAGTCTT+AGG | 0.442458 | 8.2:-66224286 | None:intergenic |
| AATGGCTGGCCTAAGACTTT+GGG | 0.446503 | 8.2:+66224277 | MS.gene58348:CDS |
| CTGGATCAAACAAAGGAATT+GGG | 0.448357 | 8.2:+66221976 | MS.gene58348:CDS |
| TGTGAATGTATCATCCACTT+TGG | 0.452489 | 8.2:+66223471 | MS.gene58348:CDS |
| TCATTGCAGGTTAACAATGC+AGG | 0.478904 | 8.2:+66222700 | MS.gene58348:intron |
| AATTAGATTATGACAATGGC+TGG | 0.479112 | 8.2:+66224263 | MS.gene58348:CDS |
| AATTCGAGAACTTAATCAAA+AGG | 0.483295 | 8.2:-66224527 | None:intergenic |
| GTAAGGCAGTTAGCTTCAGC+TGG | 0.501587 | 8.2:+66222008 | MS.gene58348:CDS |
| ACAAAGAGGTCTTCAAGCAT+TGG | 0.504110 | 8.2:+66222061 | MS.gene58348:CDS |
| TGCATCAATAGTGTTTGTCC+TGG | 0.525422 | 8.2:+66224370 | MS.gene58348:CDS |
| CATTGCAGGTTAACAATGCA+GGG | 0.526650 | 8.2:+66222701 | MS.gene58348:intron |
| ATCTGGCTATCTACAACCGT+GGG | 0.533389 | 8.2:+66222761 | MS.gene58348:CDS |
| AATCTGGCTATCTACAACCG+TGG | 0.539912 | 8.2:+66222760 | MS.gene58348:CDS |
| CAACTCCAGAGTATACCAAA+TGG | 0.540082 | 8.2:+66224139 | MS.gene58348:intron |
| TTAGAATTAGATTATGACAA+TGG | 0.542672 | 8.2:+66224259 | MS.gene58348:CDS |
| GGTTTGTTAACGGTTGAAGA+AGG | 0.550234 | 8.2:+66224424 | MS.gene58348:CDS |
| TTGCCAGAAGGACTACCATT+GGG | 0.562032 | 8.2:-66224478 | None:intergenic |
| CTTGCCAGAAGGACTACCAT+TGG | 0.563410 | 8.2:-66224479 | None:intergenic |
| ACAGATATAACTGCCAATAA+CGG | 0.574376 | 8.2:+66224403 | MS.gene58348:CDS |
| TGAGTTTCTCAGGTATGCAG+TGG | 0.581527 | 8.2:+66221950 | MS.gene58348:intron |
| TACCTCTAACTGCCCCAAAG+TGG | 0.586859 | 8.2:-66223485 | None:intergenic |
| AAAAGGAAGACATTTCAGTC+CGG | 0.588047 | 8.2:-66224510 | None:intergenic |
| TTTGACAAAATGTGCAAGAG+AGG | 0.592711 | 8.2:-66222159 | None:intergenic |
| CGGTAAAAGAACTTGCCAGA+AGG | 0.596398 | 8.2:-66224490 | None:intergenic |
| TCCAGAGTATACCAAATGGA+TGG | 0.620884 | 8.2:+66224143 | MS.gene58348:intron |
| TGAATGTATCATCCACTTTG+GGG | 0.628075 | 8.2:+66223473 | MS.gene58348:CDS |
| AAGCTAGCACTAATTCCCAA+TGG | 0.659925 | 8.2:+66224463 | MS.gene58348:CDS |
| ATATCTGTTATAGTATAACC+AGG | 0.664789 | 8.2:-66224388 | None:intergenic |
| TCAAACATATGAATTAGCTG+AGG | 0.676154 | 8.2:+66223363 | MS.gene58348:CDS |
| GTGGTGACTGGATCAAACAA+AGG | 0.685249 | 8.2:+66221969 | MS.gene58348:CDS |
| ACAGCAAGAGATGAACAAAG+AGG | 0.686221 | 8.2:+66222047 | MS.gene58348:CDS |
| TCTGGCTATCTACAACCGTG+GGG | 0.756741 | 8.2:+66222762 | MS.gene58348:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATGATTATAATCAT+AGG | - | chr8.2:66221835-66221854 | None:intergenic | 10.0% |
| !! | AAAAAAGTGAAAAATGAAAA+TGG | - | chr8.2:66221893-66221912 | None:intergenic | 15.0% |
| !! | AGAGAATGATAAAAAAAATA+TGG | - | chr8.2:66222480-66222499 | None:intergenic | 15.0% |
| !! | GTATGTTAATCATAAAATTT+GGG | - | chr8.2:66223096-66223115 | None:intergenic | 15.0% |
| !! | TTCACTTATAAAGATAATTT+GGG | - | chr8.2:66223024-66223043 | None:intergenic | 15.0% |
| !! | AAACTATGTGGTATTATTAA+TGG | + | chr8.2:66223978-66223997 | MS.gene58348:intron | 20.0% |
| !! | AAACTGAACAATAAATTTGA+CGG | - | chr8.2:66223697-66223716 | None:intergenic | 20.0% |
| !! | ATGAAAATTTCCATTAATTC+TGG | + | chr8.2:66223163-66223182 | MS.gene58348:intron | 20.0% |
| !! | CATGATATATGTTATGTAAA+TGG | + | chr8.2:66223217-66223236 | MS.gene58348:intron | 20.0% |
| !! | CTTCACTTATAAAGATAATT+TGG | - | chr8.2:66223025-66223044 | None:intergenic | 20.0% |
| !! | GGTATGTTAATCATAAAATT+TGG | - | chr8.2:66223097-66223116 | None:intergenic | 20.0% |
| !! | TGTTTGCAAACAAATTATTA+TGG | + | chr8.2:66223388-66223407 | MS.gene58348:CDS | 20.0% |
| !! | TTAGAATTAGATTATGACAA+TGG | + | chr8.2:66224259-66224278 | MS.gene58348:CDS | 20.0% |
| !! | TTGTAACAAAATATAACAAG+TGG | - | chr8.2:66222548-66222567 | None:intergenic | 20.0% |
| !!! | AAAACTTAGTCTTATAAAAC+CGG | - | chr8.2:66223067-66223086 | None:intergenic | 20.0% |
| !!! | AAATTTTCATTTCTTTATCG+AGG | - | chr8.2:66223153-66223172 | None:intergenic | 20.0% |
| !!! | AACCTATCAAATTGATTTAA+TGG | - | chr8.2:66222595-66222614 | None:intergenic | 20.0% |
| !!! | AATATGCCATTTATTTTTGT+TGG | - | chr8.2:66223275-66223294 | None:intergenic | 20.0% |
| !!! | TAAGTTAGAATCTATTTTAG+AGG | - | chr8.2:66223633-66223652 | None:intergenic | 20.0% |
| !!! | TGTTTTTCTGTTTATACTTA+AGG | - | chr8.2:66223845-66223864 | None:intergenic | 20.0% |
| !!! | TTTTGAGTTAAATAACACAA+TGG | + | chr8.2:66222290-66222309 | MS.gene58348:intron | 20.0% |
| ! | AATACAACAAATTGAAATCG+CGG | + | chr8.2:66222357-66222376 | MS.gene58348:intron | 25.0% |
| ! | AATATCAAGTTTGCCAAATT+GGG | - | chr8.2:66222186-66222205 | None:intergenic | 25.0% |
| ! | AATCCAAGATACACTTATTA+AGG | - | chr8.2:66223528-66223547 | None:intergenic | 25.0% |
| ! | AGAAACTATGTGAATATAAG+CGG | + | chr8.2:66224036-66224055 | MS.gene58348:intron | 25.0% |
| ! | ATATCTGTTATAGTATAACC+AGG | - | chr8.2:66224391-66224410 | None:intergenic | 25.0% |
| ! | ATCTTGCCAACAAAAATAAA+TGG | + | chr8.2:66223266-66223285 | MS.gene58348:intron | 25.0% |
| ! | ATTGCAAATAATGACTAACA+AGG | - | chr8.2:66222455-66222474 | None:intergenic | 25.0% |
| ! | CTGGCTTATTATGTTATATT+CGG | - | chr8.2:66222861-66222880 | None:intergenic | 25.0% |
| ! | CTTATAAAGATAATTTGGGT+TGG | - | chr8.2:66223020-66223039 | None:intergenic | 25.0% |
| ! | GATTTCAAACCAATTAATAG+TGG | + | chr8.2:66223938-66223957 | MS.gene58348:intron | 25.0% |
| ! | GTTAATCATAAAATTTGGGT+TGG | - | chr8.2:66223092-66223111 | None:intergenic | 25.0% |
| ! | TAGAACATCTGATAAGATAT+TGG | + | chr8.2:66222244-66222263 | MS.gene58348:intron | 25.0% |
| ! | TGAAGACAACAAATTAATCA+TGG | + | chr8.2:66223582-66223601 | MS.gene58348:intron | 25.0% |
| ! | TGCATATATAGAAAATGAGA+AGG | - | chr8.2:66222659-66222678 | None:intergenic | 25.0% |
| ! | TGCCATTAAATCAATTTGAT+AGG | + | chr8.2:66222590-66222609 | MS.gene58348:intron | 25.0% |
| ! | TGGCTTATTATGTTATATTC+GGG | - | chr8.2:66222860-66222879 | None:intergenic | 25.0% |
| ! | TGTCGCAATATAAAGATTTA+TGG | - | chr8.2:66221794-66221813 | None:intergenic | 25.0% |
| ! | TTACGAGATAATGATAAAGA+TGG | - | chr8.2:66224076-66224095 | None:intergenic | 25.0% |
| !! | AATCCGTTTCCAAATTTTAA+AGG | - | chr8.2:66223874-66223893 | None:intergenic | 25.0% |
| !! | TTGGTGAATCAGATAATTTT+AGG | - | chr8.2:66223447-66223466 | None:intergenic | 25.0% |
| !! | TTTCTAGAAGATTTCAAAGA+AGG | + | chr8.2:66224232-66224251 | MS.gene58348:CDS | 25.0% |
| !!! | AAATTTCTTGATAGCTTTGA+AGG | + | chr8.2:66222623-66222642 | MS.gene58348:intron | 25.0% |
| !!! | AATTTCTTGATAGCTTTGAA+GGG | + | chr8.2:66222624-66222643 | MS.gene58348:intron | 25.0% |
| !!! | CAAACTTAGTCTTATAAAAC+CGG | - | chr8.2:66222995-66223014 | None:intergenic | 25.0% |
| !!! | GTATGATTTTTTCGCATTTA+CGG | + | chr8.2:66222209-66222228 | MS.gene58348:intron | 25.0% |
| !!! | GTCATGATGAAAATTGATTT+TGG | - | chr8.2:66223742-66223761 | None:intergenic | 25.0% |
| !!! | TGAATCAGATAATTTTAGGA+GGG | - | chr8.2:66223443-66223462 | None:intergenic | 25.0% |
| !!! | TTGCCTTTAAAATTTGGAAA+CGG | + | chr8.2:66223868-66223887 | MS.gene58348:intron | 25.0% |
| AAAGGATCAAAACATGAAGA+AGG | - | chr8.2:66221919-66221938 | None:intergenic | 30.0% | |
| AAATCCTGGTCATAATGTTT+AGG | + | chr8.2:66223785-66223804 | MS.gene58348:intron | 30.0% | |
| AAGATACACTTATTAAGGCA+AGG | - | chr8.2:66223523-66223542 | None:intergenic | 30.0% | |
| AAGGTTTAACTCTTCCATAA+GGG | - | chr8.2:66223551-66223570 | None:intergenic | 30.0% | |
| AATTAGATTATGACAATGGC+TGG | + | chr8.2:66224263-66224282 | MS.gene58348:CDS | 30.0% | |
| ACACTATTGATGCATATAGT+AGG | - | chr8.2:66224364-66224383 | None:intergenic | 30.0% | |
| ACAGATATAACTGCCAATAA+CGG | + | chr8.2:66224403-66224422 | MS.gene58348:CDS | 30.0% | |
| ACATCTGATAAGATATTGGA+CGG | + | chr8.2:66222248-66222267 | MS.gene58348:intron | 30.0% | |
| AGTCATTCTCCACTATTAAT+TGG | - | chr8.2:66223950-66223969 | None:intergenic | 30.0% | |
| ATGTCACAACAAAACATACA+AGG | - | chr8.2:66222415-66222434 | None:intergenic | 30.0% | |
| ATTTGGCAAACTTGATATTC+TGG | + | chr8.2:66222187-66222206 | MS.gene58348:CDS | 30.0% | |
| CAAATGCTTGAATATGTATC+TGG | + | chr8.2:66222517-66222536 | MS.gene58348:intron | 30.0% | |
| CAGATACATATTCAAGCATT+TGG | - | chr8.2:66222519-66222538 | None:intergenic | 30.0% | |
| GAATATCAAGTTTGCCAAAT+TGG | - | chr8.2:66222187-66222206 | None:intergenic | 30.0% | |
| GATAATGATAAAGATGGTGA+TGG | - | chr8.2:66224070-66224089 | None:intergenic | 30.0% | |
| GATGATACATTCACAATTCT+TGG | - | chr8.2:66223466-66223485 | None:intergenic | 30.0% | |
| GTAAATGGTCTCATTGTTAA+TGG | + | chr8.2:66223232-66223251 | MS.gene58348:intron | 30.0% | |
| TAACAAAAGTTGTTCATTGC+AGG | + | chr8.2:66222687-66222706 | MS.gene58348:intron | 30.0% | |
| TAAGGTTTAACTCTTCCATA+AGG | - | chr8.2:66223552-66223571 | None:intergenic | 30.0% | |
| TAGATTGACATAAAGCATAG+TGG | - | chr8.2:66223191-66223210 | None:intergenic | 30.0% | |
| TATACCTAAACATTATGACC+AGG | - | chr8.2:66223792-66223811 | None:intergenic | 30.0% | |
| TCAAACATATGAATTAGCTG+AGG | + | chr8.2:66223363-66223382 | MS.gene58348:CDS | 30.0% | |
| TGACAAAGAGTTTCTTAATC+TGG | + | chr8.2:66222744-66222763 | MS.gene58348:CDS | 30.0% | |
| TTGACGGTAAAAATCATGTT+TGG | - | chr8.2:66223681-66223700 | None:intergenic | 30.0% | |
| TTGCCTTAATAAGTGTATCT+TGG | + | chr8.2:66223522-66223541 | MS.gene58348:intron | 30.0% | |
| TTTCTCTTCTGTAAGGTTAT+CGG | - | chr8.2:66224191-66224210 | None:intergenic | 30.0% | |
| ! | CATTTTGTCAAATCCCAATT+TGG | + | chr8.2:66222170-66222189 | MS.gene58348:CDS | 30.0% |
| ! | GTGAATCAGATAATTTTAGG+AGG | - | chr8.2:66223444-66223463 | None:intergenic | 30.0% |
| ! | TATTATCTTCTGATAATGCC+TGG | - | chr8.2:66223327-66223346 | None:intergenic | 30.0% |
| !! | ACAAGCTTGCCTTTAAAATT+TGG | + | chr8.2:66223862-66223881 | MS.gene58348:intron | 30.0% |
| !! | CGGTTTTATAAGACTAAGTT+TGG | + | chr8.2:66222993-66223012 | MS.gene58348:intron | 30.0% |
| !! | GAATCAGATAATTTTAGGAG+GGG | - | chr8.2:66223442-66223461 | None:intergenic | 30.0% |
| !! | TCTTGACCATTGATTTAGAT+AGG | - | chr8.2:66223920-66223939 | None:intergenic | 30.0% |
| !! | TGTCTTCAGAATCACTTTTA+AGG | - | chr8.2:66223570-66223589 | None:intergenic | 30.0% |
| !!! | TCTTCATGTTTTGATCCTTT+TGG | + | chr8.2:66221919-66221938 | MS.gene58348:intron | 30.0% |
| AAAAGGAAGACATTTCAGTC+CGG | - | chr8.2:66224513-66224532 | None:intergenic | 35.0% | |
| AACCGTTAACAAACCGTTAT+TGG | - | chr8.2:66224419-66224438 | None:intergenic | 35.0% | |
| AAGGAATAACAAAAGACGCA+AGG | - | chr8.2:66222396-66222415 | None:intergenic | 35.0% | |
| AAGGTTACCAGACATATTGA+TGG | - | chr8.2:66223826-66223845 | None:intergenic | 35.0% | |
| ACGGTAAAAATCATGTTTGG+AGG | - | chr8.2:66223678-66223697 | None:intergenic | 35.0% | |
| ACTGGATCAAACAAAGGAAT+TGG | + | chr8.2:66221975-66221994 | MS.gene58348:CDS | 35.0% | |
| ATATAAGCTCCCAAAGTCTT+AGG | - | chr8.2:66224289-66224308 | None:intergenic | 35.0% | |
| CATCTACTTTCTCTTCTGTA+AGG | - | chr8.2:66224198-66224217 | None:intergenic | 35.0% | |
| CTGGATCAAACAAAGGAATT+GGG | + | chr8.2:66221976-66221995 | MS.gene58348:CDS | 35.0% | |
| CTTCAATGTGGGATTCATAA+CGG | - | chr8.2:66222828-66222847 | None:intergenic | 35.0% | |
| GTGAATGTATCATCCACTTT+GGG | + | chr8.2:66223472-66223491 | MS.gene58348:CDS | 35.0% | |
| GTTAACAATGCAGGGATTAT+TGG | + | chr8.2:66222709-66222728 | MS.gene58348:CDS | 35.0% | |
| TGAATGTATCATCCACTTTG+GGG | + | chr8.2:66223473-66223492 | MS.gene58348:CDS | 35.0% | |
| TGACACAATTTATCCTTTCC+AGG | + | chr8.2:66223306-66223325 | MS.gene58348:intron | 35.0% | |
| TGACGTCCTATCTAAATCAA+TGG | + | chr8.2:66223911-66223930 | MS.gene58348:intron | 35.0% | |
| TGTGAATGTATCATCCACTT+TGG | + | chr8.2:66223471-66223490 | MS.gene58348:CDS | 35.0% | |
| TTTGACAAAATGTGCAAGAG+AGG | - | chr8.2:66222162-66222181 | None:intergenic | 35.0% | |
| ! | AATAGTGGAGAATGACTGTT+GGG | + | chr8.2:66223953-66223972 | MS.gene58348:intron | 35.0% |
| ! | CATAGTGGAACCAGAATTAA+TGG | - | chr8.2:66223176-66223195 | None:intergenic | 35.0% |
| ! | GAATTGGGTTTGAGATAGTA+AGG | + | chr8.2:66221991-66222010 | MS.gene58348:CDS | 35.0% |
| ! | TAATAGTGGAGAATGACTGT+TGG | + | chr8.2:66223952-66223971 | MS.gene58348:intron | 35.0% |
| ! | TTTTCGCATTTACGGTAGTT+GGG | + | chr8.2:66222217-66222236 | MS.gene58348:intron | 35.0% |
| ! | TTTTTCGCATTTACGGTAGT+TGG | + | chr8.2:66222216-66222235 | MS.gene58348:intron | 35.0% |
| !! | TGCCAATAACGGTTTGTTAA+CGG | + | chr8.2:66224414-66224433 | MS.gene58348:CDS | 35.0% |
| !!! | GTTTTGATCCTTTTGGTGTT+GGG | + | chr8.2:66221926-66221945 | MS.gene58348:intron | 35.0% |
| !!! | TGTTTTGATCCTTTTGGTGT+TGG | + | chr8.2:66221925-66221944 | MS.gene58348:intron | 35.0% |
| AAACTCAACCCAACACCAAA+AGG | - | chr8.2:66221937-66221956 | None:intergenic | 40.0% | |
| AAAGACGCAAGGTAAAGCTA+AGG | - | chr8.2:66222385-66222404 | None:intergenic | 40.0% | |
| AAGACGCAAGGTAAAGCTAA+GGG | - | chr8.2:66222384-66222403 | None:intergenic | 40.0% | |
| AAGCTAGCACTAATTCCCAA+TGG | + | chr8.2:66224463-66224482 | MS.gene58348:CDS | 40.0% | |
| ACAAAGAGGTCTTCAAGCAT+TGG | + | chr8.2:66222061-66222080 | MS.gene58348:CDS | 40.0% | |
| ACAGCAAGAGATGAACAAAG+AGG | + | chr8.2:66222047-66222066 | MS.gene58348:CDS | 40.0% | |
| ACAGTCAGTATGTTACAAGC+CGG | + | chr8.2:66222973-66222992 | MS.gene58348:intron | 40.0% | |
| ACATCTGCATATTTACCCCA+CGG | - | chr8.2:66222780-66222799 | None:intergenic | 40.0% | |
| CAACTCCAGAGTATACCAAA+TGG | + | chr8.2:66224139-66224158 | MS.gene58348:intron | 40.0% | |
| CACACACTAAAACGAAATCC+TGG | + | chr8.2:66223771-66223790 | MS.gene58348:intron | 40.0% | |
| CATTGCAGGTTAACAATGCA+GGG | + | chr8.2:66222701-66222720 | MS.gene58348:intron | 40.0% | |
| CGATAGTCAATATCGACCAT+TGG | - | chr8.2:66224014-66224033 | None:intergenic | 40.0% | |
| CGTTATGAATCCCACATTGA+AGG | + | chr8.2:66222826-66222845 | MS.gene58348:intron | 40.0% | |
| GTGTATCTTGGATTCCCTTA+TGG | + | chr8.2:66223534-66223553 | MS.gene58348:intron | 40.0% | |
| TCATTGCAGGTTAACAATGC+AGG | + | chr8.2:66222700-66222719 | MS.gene58348:intron | 40.0% | |
| TCCAGAGTATACCAAATGGA+TGG | + | chr8.2:66224143-66224162 | MS.gene58348:intron | 40.0% | |
| TGCATCAATAGTGTTTGTCC+TGG | + | chr8.2:66224370-66224389 | MS.gene58348:CDS | 40.0% | |
| TTGGAAACACTCAAAGCTTC+TGG | + | chr8.2:66222080-66222099 | MS.gene58348:CDS | 40.0% | |
| ! | AAATTTGGAAACGGATTCGC+AGG | + | chr8.2:66223877-66223896 | MS.gene58348:intron | 40.0% |
| ! | AATTTGGAAACGGATTCGCA+GGG | + | chr8.2:66223878-66223897 | MS.gene58348:intron | 40.0% |
| ! | CTTCTGGCAAGTTCTTTTAC+CGG | + | chr8.2:66224491-66224510 | MS.gene58348:CDS | 40.0% |
| ! | GGTCTTATCTCCTTCAATGT+GGG | - | chr8.2:66222839-66222858 | None:intergenic | 40.0% |
| ! | TCTTCTGATAATGCCTGGAA+AGG | - | chr8.2:66223322-66223341 | None:intergenic | 40.0% |
| !! | AAGCTTTTTGGCCATCCATT+TGG | - | chr8.2:66224157-66224176 | None:intergenic | 40.0% |
| !! | GGTTTGTTAACGGTTGAAGA+AGG | + | chr8.2:66224424-66224443 | MS.gene58348:CDS | 40.0% |
| AATCTGGCTATCTACAACCG+TGG | + | chr8.2:66222760-66222779 | MS.gene58348:CDS | 45.0% | |
| ATCTGGCTATCTACAACCGT+GGG | + | chr8.2:66222761-66222780 | MS.gene58348:CDS | 45.0% | |
| ATTCCCAATGGTAGTCCTTC+TGG | + | chr8.2:66224475-66224494 | MS.gene58348:CDS | 45.0% | |
| CGGTAAAAGAACTTGCCAGA+AGG | - | chr8.2:66224493-66224512 | None:intergenic | 45.0% | |
| CTCGTCTCATTGATCTGAGT+TGG | - | chr8.2:66222929-66222948 | None:intergenic | 45.0% | |
| GACTGTTGGGAGAAACTATG+TGG | + | chr8.2:66223966-66223985 | MS.gene58348:intron | 45.0% | |
| GCAGTACTCATCTCACAAGT+CGG | + | chr8.2:66222882-66222901 | MS.gene58348:intron | 45.0% | |
| GCCATCCATTTGGTATACTC+TGG | - | chr8.2:66224147-66224166 | None:intergenic | 45.0% | |
| GCTTTCGCCATCAATATGTC+TGG | + | chr8.2:66223816-66223835 | MS.gene58348:intron | 45.0% | |
| GGATGGCCAAAAAGCTTCTT+CGG | + | chr8.2:66224160-66224179 | MS.gene58348:CDS | 45.0% | |
| GTGGTGACTGGATCAAACAA+AGG | + | chr8.2:66221969-66221988 | MS.gene58348:CDS | 45.0% | |
| TGAGTTTCTCAGGTATGCAG+TGG | + | chr8.2:66221950-66221969 | MS.gene58348:intron | 45.0% | |
| TTGCCAGAAGGACTACCATT+GGG | - | chr8.2:66224481-66224500 | None:intergenic | 45.0% | |
| ! | GCTTCACCGAAGAAGCTTTT+TGG | - | chr8.2:66224169-66224188 | None:intergenic | 45.0% |
| ! | GGGTCTTATCTCCTTCAATG+TGG | - | chr8.2:66222840-66222859 | None:intergenic | 45.0% |
| ! | TAATGGACGCGAGAAACCAA+TGG | + | chr8.2:66223995-66224014 | MS.gene58348:intron | 45.0% |
| ! | TTGTGAGATGAGTACTGCTC+TGG | - | chr8.2:66222880-66222899 | None:intergenic | 45.0% |
| !! | AATGGCTGGCCTAAGACTTT+GGG | + | chr8.2:66224277-66224296 | MS.gene58348:CDS | 45.0% |
| !! | CGAGTCGTCTTAACTTGTTC+AGG | + | chr8.2:66222318-66222337 | MS.gene58348:intron | 45.0% |
| !! | AAATTTAATAAAAATTTAGA+GGG | - | chr8.2:66223118-66223137 | None:intergenic | 5.0% |
| !! | TAAATTTAATAAAAATTTAG+AGG | - | chr8.2:66223119-66223138 | None:intergenic | 5.0% |
| !!! | AAAATATAACAATATTTTAA+TGG | - | chr8.2:66221863-66221882 | None:intergenic | 5.0% |
| CTTGCCAGAAGGACTACCAT+TGG | - | chr8.2:66224482-66224501 | None:intergenic | 50.0% | |
| TACCTCTAACTGCCCCAAAG+TGG | - | chr8.2:66223488-66223507 | None:intergenic | 50.0% | |
| TCTGGCTATCTACAACCGTG+GGG | + | chr8.2:66222762-66222781 | MS.gene58348:CDS | 50.0% | |
| ! | GTAAGGCAGTTAGCTTCAGC+TGG | + | chr8.2:66222008-66222027 | MS.gene58348:CDS | 50.0% |
| !! | ATCCACTTTGGGGCAGTTAG+AGG | + | chr8.2:66223483-66223502 | MS.gene58348:CDS | 50.0% |
| !! | CAATGGCTGGCCTAAGACTT+TGG | + | chr8.2:66224276-66224295 | MS.gene58348:CDS | 50.0% |
| !! | GGTGTTGGGTTGAGTTTCTC+AGG | + | chr8.2:66221940-66221959 | MS.gene58348:intron | 50.0% |
| CTCAGGTATGCAGTGGTGAC+TGG | + | chr8.2:66221957-66221976 | MS.gene58348:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 66221734 | 66224534 | 66221734 | ID=MS.gene58348 |
| chr8.2 | mRNA | 66221734 | 66224534 | 66221734 | ID=MS.gene58348.t1;Parent=MS.gene58348 |
| chr8.2 | exon | 66221734 | 66221753 | 66221734 | ID=MS.gene58348.t1.exon1;Parent=MS.gene58348.t1 |
| chr8.2 | CDS | 66221734 | 66221753 | 66221734 | ID=cds.MS.gene58348.t1;Parent=MS.gene58348.t1 |
| chr8.2 | exon | 66221962 | 66222208 | 66221962 | ID=MS.gene58348.t1.exon2;Parent=MS.gene58348.t1 |
| chr8.2 | CDS | 66221962 | 66222208 | 66221962 | ID=cds.MS.gene58348.t1;Parent=MS.gene58348.t1 |
| chr8.2 | exon | 66222709 | 66222783 | 66222709 | ID=MS.gene58348.t1.exon3;Parent=MS.gene58348.t1 |
| chr8.2 | CDS | 66222709 | 66222783 | 66222709 | ID=cds.MS.gene58348.t1;Parent=MS.gene58348.t1 |
| chr8.2 | exon | 66223328 | 66223504 | 66223328 | ID=MS.gene58348.t1.exon4;Parent=MS.gene58348.t1 |
| chr8.2 | CDS | 66223328 | 66223504 | 66223328 | ID=cds.MS.gene58348.t1;Parent=MS.gene58348.t1 |
| chr8.2 | exon | 66224148 | 66224534 | 66224148 | ID=MS.gene58348.t1.exon5;Parent=MS.gene58348.t1 |
| chr8.2 | CDS | 66224148 | 66224534 | 66224148 | ID=cds.MS.gene58348.t1;Parent=MS.gene58348.t1 |
| Gene Sequence |
| Protein sequence |
