Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57562.t1 | XP_003627599.1 | 96.3 | 298 | 11 | 0 | 1 | 298 | 1 | 298 | 1.30E-153 | 552.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57562.t1 | Q9M2E2 | 57.8 | 296 | 115 | 5 | 7 | 298 | 7 | 296 | 1.6e-86 | 320.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57562.t1 | G7J257 | 96.3 | 298 | 11 | 0 | 1 | 298 | 1 | 298 | 9.5e-154 | 552.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene57562 | 0.803948 | 2.73E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene57562 | 0.802562 | 5.29E-49 | -1.69E-46 |
| MS.gene050301 | MS.gene57562 | 0.832413 | 9.59E-56 | -1.69E-46 |
| MS.gene050397 | MS.gene57562 | 0.812653 | 3.81E-51 | -1.69E-46 |
| MS.gene051860 | MS.gene57562 | 0.837727 | 4.38E-57 | -1.69E-46 |
| MS.gene052011 | MS.gene57562 | -0.8155 | 8.96E-52 | -1.69E-46 |
| MS.gene052178 | MS.gene57562 | 0.8287 | 7.77E-55 | -1.69E-46 |
| MS.gene052253 | MS.gene57562 | 0.8057 | 1.18E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene57562 | 0.810175 | 1.31E-50 | -1.69E-46 |
| MS.gene054010 | MS.gene57562 | 0.884175 | 2.40E-71 | -1.69E-46 |
| MS.gene054011 | MS.gene57562 | 0.875223 | 3.65E-68 | -1.69E-46 |
| MS.gene054012 | MS.gene57562 | 0.885517 | 7.59E-72 | -1.69E-46 |
| MS.gene054013 | MS.gene57562 | 0.884916 | 1.27E-71 | -1.69E-46 |
| MS.gene054183 | MS.gene57562 | 0.817566 | 3.09E-52 | -1.69E-46 |
| MS.gene055277 | MS.gene57562 | 0.828783 | 7.42E-55 | -1.69E-46 |
| MS.gene055604 | MS.gene57562 | 0.838428 | 2.89E-57 | -1.69E-46 |
| MS.gene056191 | MS.gene57562 | 0.834167 | 3.51E-56 | -1.69E-46 |
| MS.gene056902 | MS.gene57562 | 0.837287 | 5.68E-57 | -1.69E-46 |
| MS.gene057469 | MS.gene57562 | 0.801993 | 6.93E-49 | -1.69E-46 |
| MS.gene057779 | MS.gene57562 | 0.802414 | 5.67E-49 | -1.69E-46 |
| MS.gene05811 | MS.gene57562 | 0.834288 | 3.27E-56 | -1.69E-46 |
| MS.gene05842 | MS.gene57562 | 0.827674 | 1.37E-54 | -1.69E-46 |
| MS.gene058995 | MS.gene57562 | 0.817003 | 4.13E-52 | -1.69E-46 |
| MS.gene05907 | MS.gene57562 | 0.851282 | 9.83E-61 | -1.69E-46 |
| MS.gene059294 | MS.gene57562 | 0.858294 | 9.09E-63 | -1.69E-46 |
| MS.gene059518 | MS.gene57562 | 0.804422 | 2.18E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene57562 | 0.823822 | 1.13E-53 | -1.69E-46 |
| MS.gene06037 | MS.gene57562 | 0.803205 | 3.90E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene57562 | 0.818207 | 2.21E-52 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57562.t1 | MTR_8g031980 | 96.309 | 298 | 11 | 0 | 1 | 298 | 1 | 298 | 0.0 | 583 |
| MS.gene57562.t1 | MTR_8g031960 | 89.078 | 293 | 31 | 1 | 7 | 298 | 8 | 300 | 0.0 | 532 |
| MS.gene57562.t1 | MTR_8g031940 | 78.930 | 299 | 62 | 1 | 1 | 298 | 1 | 299 | 1.75e-171 | 476 |
| MS.gene57562.t1 | MTR_8g031990 | 70.805 | 298 | 87 | 0 | 1 | 298 | 1 | 298 | 4.74e-156 | 437 |
| MS.gene57562.t1 | MTR_8g032000 | 70.134 | 298 | 89 | 0 | 1 | 298 | 1 | 298 | 1.46e-155 | 436 |
| MS.gene57562.t1 | MTR_8g032020 | 70.805 | 298 | 86 | 1 | 2 | 298 | 3 | 300 | 6.97e-155 | 434 |
| MS.gene57562.t1 | MTR_8g032010 | 68.792 | 298 | 93 | 0 | 1 | 298 | 1 | 298 | 2.78e-153 | 431 |
| MS.gene57562.t1 | MTR_7g076660 | 58.725 | 298 | 111 | 3 | 1 | 298 | 1 | 286 | 5.24e-124 | 356 |
| MS.gene57562.t1 | MTR_7g076660 | 59.044 | 293 | 108 | 3 | 6 | 298 | 7 | 287 | 3.33e-123 | 354 |
| MS.gene57562.t1 | MTR_7g076655 | 57.383 | 298 | 115 | 3 | 1 | 298 | 1 | 286 | 2.58e-121 | 349 |
| MS.gene57562.t1 | MTR_8g031600 | 57.192 | 292 | 121 | 2 | 9 | 298 | 9 | 298 | 3.43e-115 | 334 |
| MS.gene57562.t1 | MTR_8g031630 | 56.333 | 300 | 126 | 4 | 1 | 298 | 1 | 297 | 2.73e-114 | 332 |
| MS.gene57562.t1 | MTR_8g031910 | 56.522 | 299 | 117 | 3 | 1 | 298 | 1 | 287 | 3.74e-114 | 331 |
| MS.gene57562.t1 | MTR_8g031610 | 56.419 | 296 | 125 | 3 | 4 | 298 | 2 | 294 | 6.38e-114 | 330 |
| MS.gene57562.t1 | MTR_7g076665 | 57.860 | 299 | 121 | 3 | 1 | 298 | 1 | 295 | 8.30e-114 | 330 |
| MS.gene57562.t1 | MTR_8g031900 | 54.362 | 298 | 131 | 2 | 1 | 298 | 1 | 293 | 1.40e-113 | 330 |
| MS.gene57562.t1 | MTR_7g076660 | 58.242 | 273 | 102 | 3 | 26 | 298 | 2 | 262 | 1.26e-112 | 326 |
| MS.gene57562.t1 | MTR_5g062280 | 54.485 | 301 | 128 | 3 | 1 | 298 | 1 | 295 | 5.38e-112 | 326 |
| MS.gene57562.t1 | MTR_8g031650 | 57.045 | 291 | 120 | 4 | 10 | 298 | 104 | 391 | 7.89e-111 | 326 |
| MS.gene57562.t1 | MTR_8g031650 | 58.252 | 103 | 41 | 2 | 169 | 269 | 1 | 103 | 3.45e-35 | 131 |
| MS.gene57562.t1 | MTR_8g031650 | 57.045 | 291 | 120 | 4 | 10 | 298 | 270 | 557 | 7.66e-109 | 327 |
| MS.gene57562.t1 | MTR_8g031650 | 56.827 | 271 | 113 | 3 | 1 | 269 | 1 | 269 | 7.85e-101 | 306 |
| MS.gene57562.t1 | MTR_3g079320 | 47.667 | 300 | 151 | 3 | 4 | 298 | 8 | 306 | 1.52e-89 | 269 |
| MS.gene57562.t1 | MTR_8g031850 | 45.973 | 298 | 118 | 4 | 1 | 298 | 1 | 255 | 3.14e-86 | 259 |
| MS.gene57562.t1 | MTR_8g032030 | 75.862 | 174 | 41 | 1 | 1 | 173 | 1 | 174 | 7.30e-86 | 257 |
| MS.gene57562.t1 | MTR_7g106800 | 48.822 | 297 | 92 | 4 | 7 | 298 | 9 | 250 | 4.94e-85 | 256 |
| MS.gene57562.t1 | MTR_5g083430 | 58.140 | 172 | 72 | 0 | 127 | 298 | 13 | 184 | 1.75e-69 | 214 |
| MS.gene57562.t1 | MTR_3g098470 | 39.474 | 304 | 146 | 6 | 5 | 296 | 33 | 310 | 6.61e-68 | 214 |
| MS.gene57562.t1 | MTR_1g031180 | 38.487 | 304 | 149 | 6 | 5 | 296 | 38 | 315 | 5.20e-61 | 196 |
| MS.gene57562.t1 | MTR_4g087460 | 38.742 | 302 | 144 | 9 | 5 | 290 | 20 | 296 | 2.26e-59 | 192 |
| MS.gene57562.t1 | MTR_8g096060 | 36.184 | 304 | 153 | 7 | 5 | 296 | 35 | 309 | 2.15e-55 | 182 |
| MS.gene57562.t1 | MTR_3g085740 | 23.574 | 263 | 130 | 7 | 4 | 263 | 75 | 269 | 5.22e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57562.t1 | AT1G01800 | 57.095 | 296 | 122 | 4 | 5 | 298 | 3 | 295 | 1.11e-118 | 343 |
| MS.gene57562.t1 | AT3G61220 | 57.770 | 296 | 115 | 5 | 7 | 298 | 7 | 296 | 1.55e-118 | 342 |
| MS.gene57562.t1 | AT3G61220 | 57.770 | 296 | 115 | 5 | 7 | 298 | 14 | 303 | 2.80e-118 | 342 |
| MS.gene57562.t1 | AT3G61220 | 57.770 | 296 | 115 | 5 | 7 | 298 | 38 | 327 | 6.74e-118 | 342 |
| MS.gene57562.t1 | AT2G24190 | 55.150 | 301 | 127 | 5 | 1 | 298 | 1 | 296 | 2.65e-113 | 329 |
| MS.gene57562.t1 | AT2G24190 | 55.932 | 295 | 122 | 5 | 7 | 298 | 12 | 301 | 4.27e-113 | 329 |
| MS.gene57562.t1 | AT1G01800 | 55.502 | 209 | 90 | 2 | 90 | 298 | 55 | 260 | 7.50e-80 | 243 |
| MS.gene57562.t1 | AT5G51030 | 37.954 | 303 | 150 | 6 | 6 | 296 | 37 | 313 | 8.13e-66 | 209 |
| MS.gene57562.t1 | AT3G59710 | 40.345 | 290 | 143 | 7 | 5 | 290 | 17 | 280 | 8.14e-64 | 203 |
| MS.gene57562.t1 | AT3G59710 | 40.345 | 290 | 143 | 7 | 5 | 290 | 27 | 290 | 1.57e-63 | 202 |
| MS.gene57562.t1 | AT3G59710 | 40.345 | 290 | 143 | 7 | 5 | 290 | 46 | 309 | 2.87e-63 | 202 |
| MS.gene57562.t1 | AT5G61830 | 38.487 | 304 | 150 | 6 | 6 | 296 | 36 | 315 | 6.62e-60 | 194 |
| MS.gene57562.t1 | AT5G61830 | 38.487 | 304 | 150 | 6 | 6 | 296 | 36 | 315 | 6.62e-60 | 194 |
| MS.gene57562.t1 | AT4G09750 | 27.273 | 308 | 149 | 10 | 4 | 294 | 41 | 290 | 1.09e-12 | 67.8 |
| MS.gene57562.t1 | AT2G29150 | 29.333 | 300 | 130 | 10 | 3 | 298 | 15 | 236 | 1.32e-11 | 64.3 |
Find 57 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATATCAAGTTTGCCAAAT+TGG | 0.158459 | 8.3:-62645201 | None:intergenic |
| ATTTGGCAAACTTGATATTC+TGG | 0.220906 | 8.3:+62645204 | MS.gene57562:CDS |
| GATGATACATTCACAATTCT+TGG | 0.302082 | 8.3:-62646309 | None:intergenic |
| GATTTCGTCAAATCCCAATT+TGG | 0.312138 | 8.3:+62645187 | MS.gene57562:CDS |
| TTGGTGAATCAGATAACTTT+AGG | 0.321611 | 8.3:-62646290 | None:intergenic |
| AACAGAAGATGAAAAGAATA+AGG | 0.333995 | 8.3:+62646179 | MS.gene57562:CDS |
| AATATCAAGTTTGCCAAATT+GGG | 0.350754 | 8.3:-62645200 | None:intergenic |
| CATCGACTTTCTCTTCAGTT+AGG | 0.370807 | 8.3:-62646524 | None:intergenic |
| GAAAAGAGGTCTTCATGCTT+TGG | 0.397535 | 8.3:+62645078 | MS.gene57562:CDS |
| ACTGGAGCAAACAAAGGAAT+TGG | 0.400758 | 8.3:+62644992 | MS.gene57562:CDS |
| GACAACAAAATCAGATAAAC+CGG | 0.404831 | 8.3:-62645116 | None:intergenic |
| TTTCTAGAAGATTACAAAGA+AGG | 0.405469 | 8.3:+62646561 | MS.gene57562:CDS |
| TGCAGGATTGCAGTGGTGAC+TGG | 0.409146 | 8.3:+62644974 | MS.gene57562:intron |
| ATCCACTCTGGGAAAGTTAG+AGG | 0.414763 | 8.3:+62646329 | MS.gene57562:CDS |
| TGCTTGCAAATAAATTACTA+TGG | 0.414986 | 8.3:+62646234 | MS.gene57562:CDS |
| AGATTACAAAGAAGGTTCAT+TGG | 0.420124 | 8.3:+62646569 | MS.gene57562:CDS |
| ACAGATATTACTGGCAATAC+TGG | 0.424226 | 8.3:+62646723 | MS.gene57562:CDS |
| TATGTCATCACAGATATTAC+TGG | 0.425116 | 8.3:+62646714 | MS.gene57562:CDS |
| GTTAACAATGCAGGGATTAG+TGG | 0.425251 | 8.3:+62645924 | MS.gene57562:CDS |
| TAAATGCAGGTTAACAATGC+AGG | 0.432093 | 8.3:+62645915 | MS.gene57562:intron |
| CTTCCCAATGGAAGTCCATC+TGG | 0.438433 | 8.3:+62646795 | MS.gene57562:CDS |
| AGCAAAGGCTGGCCTAAAAC+TGG | 0.443573 | 8.3:+62646594 | MS.gene57562:CDS |
| CATCTGGCCGATTCTATAAC+CGG | 0.457876 | 8.3:+62646811 | MS.gene57562:CDS |
| GTTAAGCAGTTAGCTTCAGC+TGG | 0.466868 | 8.3:+62645025 | MS.gene57562:CDS |
| ACACTATTGACGCTTAAAGT+AGG | 0.472178 | 8.3:-62646681 | None:intergenic |
| TTGGAGACACTCAAAGCCTC+CGG | 0.485410 | 8.3:+62645097 | MS.gene57562:CDS |
| ATAACATAGTACTAATCAAA+AGG | 0.493573 | 8.3:-62646847 | None:intergenic |
| TACAGGGCATACAAAATGAA+TGG | 0.493728 | 8.3:+62646472 | MS.gene57562:intron |
| TCGGCCAGATGGACTTCCAT+TGG | 0.494561 | 8.3:-62646799 | None:intergenic |
| TGTGAATGTATCATCCACTC+TGG | 0.506460 | 8.3:+62646317 | MS.gene57562:CDS |
| CACTATTGACGCTTAAAGTA+GGG | 0.509329 | 8.3:-62646680 | None:intergenic |
| CTTCGGTCCGGTTATAGAAT+CGG | 0.515136 | 8.3:-62646818 | None:intergenic |
| CGGCCAGATGGACTTCCATT+GGG | 0.515928 | 8.3:-62646798 | None:intergenic |
| ATATCTGTGATGACATAGCC+AGG | 0.520953 | 8.3:-62646708 | None:intergenic |
| AAATGCAGGTTAACAATGCA+GGG | 0.523420 | 8.3:+62645916 | MS.gene57562:intron |
| ACTTTGCTGATCTCTAACTC+TGG | 0.526992 | 8.3:+62645975 | MS.gene57562:CDS |
| CGGTTATAGAATCGGCCAGA+TGG | 0.546690 | 8.3:-62646810 | None:intergenic |
| AGCGTCAATAGTGTTTGCCC+TGG | 0.550735 | 8.3:+62646690 | MS.gene57562:CDS |
| AGATGGGATCAATTGAAGAA+AGG | 0.559849 | 8.3:+62644358 | None:intergenic |
| GTGAATCAGATAACTTTAGG+AGG | 0.573947 | 8.3:-62646287 | None:intergenic |
| GGTCTCTTAACTGCTGAAGA+AGG | 0.578507 | 8.3:+62646744 | MS.gene57562:CDS |
| ACTGCAAGAGATGAGAAAAG+AGG | 0.580383 | 8.3:+62645064 | MS.gene57562:CDS |
| GTTCATTGGAAAGCAAAGGC+TGG | 0.581607 | 8.3:+62646583 | MS.gene57562:CDS |
| TAATCAAAAGGAAGAGACTT+CGG | 0.585840 | 8.3:-62646835 | None:intergenic |
| TACCTCTAACTTTCCCAGAG+TGG | 0.586644 | 8.3:-62646331 | None:intergenic |
| GTGAATGTATCATCCACTCT+GGG | 0.594044 | 8.3:+62646318 | MS.gene57562:CDS |
| TGAATCAGATAACTTTAGGA+GGG | 0.602324 | 8.3:-62646286 | None:intergenic |
| GAAGGTTCATTGGAAAGCAA+AGG | 0.604153 | 8.3:+62646579 | MS.gene57562:CDS |
| AAAAGGAAGAGACTTCGGTC+CGG | 0.622969 | 8.3:-62646830 | None:intergenic |
| GAATCAGATAACTTTAGGAG+GGG | 0.624219 | 8.3:-62646285 | None:intergenic |
| AAGCTAGCACTACTTCCCAA+TGG | 0.625738 | 8.3:+62646783 | MS.gene57562:CDS |
| TGTGGCTAATGCTGCAAGTG+TGG | 0.661469 | 8.3:+62645153 | MS.gene57562:CDS |
| GTGGTGACTGGAGCAAACAA+AGG | 0.662474 | 8.3:+62644986 | MS.gene57562:CDS |
| AAAGGCTGGCCTAAAACTGG+TGG | 0.667637 | 8.3:+62646597 | MS.gene57562:CDS |
| ATTTGTTTGCAGGATTGCAG+TGG | 0.668507 | 8.3:+62644967 | MS.gene57562:intron |
| TATCTGTGATGACATAGCCA+GGG | 0.683408 | 8.3:-62646707 | None:intergenic |
| AACAAAATCAGATAAACCGG+AGG | 0.696500 | 8.3:-62645113 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGATATAATACATATGTA+AGG | + | chr8.3:62645331-62645350 | MS.gene57562:intron | 15.0% |
| !! | TTACATATGTATTATATCAA+TGG | - | chr8.3:62645332-62645351 | None:intergenic | 15.0% |
| !!! | ATAATTTCTGGTATAATATA+AGG | - | chr8.3:62644695-62644714 | None:intergenic | 15.0% |
| !!! | TGATTGAAGTTTTTAATTAT+TGG | + | chr8.3:62646031-62646050 | MS.gene57562:intron | 15.0% |
| !!! | TTCCATTTTTATTTTACTAT+TGG | - | chr8.3:62645721-62645740 | None:intergenic | 15.0% |
| !!! | TTTGCTAAATTTTTTTATTC+TGG | + | chr8.3:62644407-62644426 | MS.gene57562:intron | 15.0% |
| !! | ATATGTTGTTGTATAATTTC+TGG | - | chr8.3:62644707-62644726 | None:intergenic | 20.0% |
| !! | GTATAATATAAGGACTAAAT+TGG | - | chr8.3:62644685-62644704 | None:intergenic | 20.0% |
| !! | TTTAGCAAAATAAAGTTTGT+TGG | - | chr8.3:62644396-62644415 | None:intergenic | 20.0% |
| !!! | AATTTTAAATGCATCATGAT+GGG | - | chr8.3:62645532-62645551 | None:intergenic | 20.0% |
| !!! | AATTTTCATAATAGCTTTGA+AGG | + | chr8.3:62645831-62645850 | MS.gene57562:intron | 20.0% |
| !!! | ATTTTCATAATAGCTTTGAA+GGG | + | chr8.3:62645832-62645851 | MS.gene57562:intron | 20.0% |
| !!! | TAATTTTAAATGCATCATGA+TGG | - | chr8.3:62645533-62645552 | None:intergenic | 20.0% |
| ! | AAACTAGTATCAAACCATTT+GGG | + | chr8.3:62644940-62644959 | MS.gene57562:intron | 25.0% |
| ! | AACAGAAGATGAAAAGAATA+AGG | + | chr8.3:62646179-62646198 | MS.gene57562:CDS | 25.0% |
| ! | AATATCAAGTTTGCCAAATT+GGG | - | chr8.3:62645203-62645222 | None:intergenic | 25.0% |
| ! | ACATACTCAAATAAACACAT+GGG | - | chr8.3:62645685-62645704 | None:intergenic | 25.0% |
| ! | AGCTTATTCATTTCAAATAC+AGG | + | chr8.3:62646455-62646474 | MS.gene57562:intron | 25.0% |
| ! | ATCTTCAGTCAAAGATTAAT+CGG | + | chr8.3:62645434-62645453 | MS.gene57562:intron | 25.0% |
| ! | ATTCATAAATAACTAAACCG+TGG | + | chr8.3:62645470-62645489 | MS.gene57562:intron | 25.0% |
| ! | CACAAACTGAATCATATTTA+AGG | - | chr8.3:62646118-62646137 | None:intergenic | 25.0% |
| ! | CATTATCAACAACAAAAAAG+AGG | - | chr8.3:62645256-62645275 | None:intergenic | 25.0% |
| ! | CTTAGAAAGTCAATAACATA+AGG | - | chr8.3:62646369-62646388 | None:intergenic | 25.0% |
| ! | GCTTATTCATTTCAAATACA+GGG | + | chr8.3:62646456-62646475 | MS.gene57562:intron | 25.0% |
| ! | GGCCAATAGTAAAATAAAAA+TGG | + | chr8.3:62645716-62645735 | MS.gene57562:intron | 25.0% |
| ! | TAAACTAGTATCAAACCATT+TGG | + | chr8.3:62644939-62644958 | MS.gene57562:intron | 25.0% |
| ! | TGCTTGCAAATAAATTACTA+TGG | + | chr8.3:62646234-62646253 | MS.gene57562:CDS | 25.0% |
| ! | TTCTGGTAACATACAAAAAT+TGG | + | chr8.3:62645221-62645240 | MS.gene57562:intron | 25.0% |
| ! | TTTCTAAACGAAACTTATCA+GGG | - | chr8.3:62646086-62646105 | None:intergenic | 25.0% |
| !! | GCAGAAAAATTTTTAAATGC+AGG | + | chr8.3:62645902-62645921 | MS.gene57562:intron | 25.0% |
| !! | TTTCTAGAAGATTACAAAGA+AGG | + | chr8.3:62646561-62646580 | MS.gene57562:CDS | 25.0% |
| !! | TTTTCTAAACGAAACTTATC+AGG | - | chr8.3:62646087-62646106 | None:intergenic | 25.0% |
| !!! | AAATTTTTTTATTCTGGTCG+TGG | + | chr8.3:62644413-62644432 | MS.gene57562:intron | 25.0% |
| !!! | ATAAAGTTTGTTGGTTTAGT+TGG | - | chr8.3:62644387-62644406 | None:intergenic | 25.0% |
| !!! | CTTATGTTATTGACTTTCTA+AGG | + | chr8.3:62646367-62646386 | MS.gene57562:intron | 25.0% |
| !!! | TTTTTAATTATTGGCTGCTA+TGG | + | chr8.3:62646040-62646059 | MS.gene57562:intron | 25.0% |
| AAAATGTTACCCTCTCTATA+TGG | - | chr8.3:62644887-62644906 | None:intergenic | 30.0% | |
| AGATTACAAAGAAGGTTCAT+TGG | + | chr8.3:62646569-62646588 | MS.gene57562:CDS | 30.0% | |
| AGTTTAAGAACCATATAGAG+AGG | + | chr8.3:62644874-62644893 | MS.gene57562:intron | 30.0% | |
| ATTTGGCAAACTTGATATTC+TGG | + | chr8.3:62645204-62645223 | MS.gene57562:CDS | 30.0% | |
| CAAACTTTACTGGATATGTT+TGG | + | chr8.3:62644456-62644475 | MS.gene57562:intron | 30.0% | |
| CACATACTCAAATAAACACA+TGG | - | chr8.3:62645686-62645705 | None:intergenic | 30.0% | |
| CTGTGTATCTGATATAAGAT+TGG | + | chr8.3:62645368-62645387 | MS.gene57562:intron | 30.0% | |
| GAATATCAAGTTTGCCAAAT+TGG | - | chr8.3:62645204-62645223 | None:intergenic | 30.0% | |
| GACAACAAAATCAGATAAAC+CGG | - | chr8.3:62645119-62645138 | None:intergenic | 30.0% | |
| GATGATACATTCACAATTCT+TGG | - | chr8.3:62646312-62646331 | None:intergenic | 30.0% | |
| GTGTTTATTTGAGTATGTGT+TGG | + | chr8.3:62645687-62645706 | MS.gene57562:intron | 30.0% | |
| GTTTAAGAACCATATAGAGA+GGG | + | chr8.3:62644875-62644894 | MS.gene57562:intron | 30.0% | |
| TAATATTGTAGAGAGATGCA+TGG | + | chr8.3:62644572-62644591 | MS.gene57562:intron | 30.0% | |
| TATGTCATCACAGATATTAC+TGG | + | chr8.3:62646714-62646733 | MS.gene57562:CDS | 30.0% | |
| TCAACAACAAAAAAGAGGAA+AGG | - | chr8.3:62645251-62645270 | None:intergenic | 30.0% | |
| TCCTGAACATCTTAATAACA+CGG | + | chr8.3:62644800-62644819 | MS.gene57562:intron | 30.0% | |
| TGTATCTGATATAAGATTGG+TGG | + | chr8.3:62645371-62645390 | MS.gene57562:intron | 30.0% | |
| TTGGTGAATCAGATAACTTT+AGG | - | chr8.3:62646293-62646312 | None:intergenic | 30.0% | |
| TTTCTTCTGTAACATTACAG+TGG | - | chr8.3:62644514-62644533 | None:intergenic | 30.0% | |
| ! | ATAGAGAGGGTAACATTTTA+AGG | + | chr8.3:62644888-62644907 | MS.gene57562:intron | 30.0% |
| ! | GACATTTTATATTGAATCGC+GGG | + | chr8.3:62645629-62645648 | MS.gene57562:intron | 30.0% |
| ! | GCTTCACATTTTGTTACATA+TGG | + | chr8.3:62645863-62645882 | MS.gene57562:intron | 30.0% |
| ! | GGACATTTTATATTGAATCG+CGG | + | chr8.3:62645628-62645647 | MS.gene57562:intron | 30.0% |
| ! | TGAATCAGATAACTTTAGGA+GGG | - | chr8.3:62646289-62646308 | None:intergenic | 30.0% |
| ! | TGTCTTTTATCAAGTAGATG+TGG | + | chr8.3:62645135-62645154 | MS.gene57562:CDS | 30.0% |
| !! | TTATTTTACTATTGGCCTAG+TGG | - | chr8.3:62645713-62645732 | None:intergenic | 30.0% |
| AAATGCAGGTTAACAATGCA+GGG | + | chr8.3:62645916-62645935 | MS.gene57562:intron | 35.0% | |
| AACAAAATCAGATAAACCGG+AGG | - | chr8.3:62645116-62645135 | None:intergenic | 35.0% | |
| ACAACAAAAAAGAGGAAAGG+AGG | - | chr8.3:62645248-62645267 | None:intergenic | 35.0% | |
| ACACTATTGACGCTTAAAGT+AGG | - | chr8.3:62646684-62646703 | None:intergenic | 35.0% | |
| ACAGATATTACTGGCAATAC+TGG | + | chr8.3:62646723-62646742 | MS.gene57562:CDS | 35.0% | |
| ATTCATGAATCGTTCTTTCC+AGG | + | chr8.3:62646152-62646171 | MS.gene57562:intron | 35.0% | |
| ATTCCATCATGTCCATTTAG+AGG | - | chr8.3:62645502-62645521 | None:intergenic | 35.0% | |
| CAAATAAACACATGGGAAAG+TGG | - | chr8.3:62645678-62645697 | None:intergenic | 35.0% | |
| CACTATTGACGCTTAAAGTA+GGG | - | chr8.3:62646683-62646702 | None:intergenic | 35.0% | |
| CATATCCAGTAAAGTTTGCA+AGG | - | chr8.3:62644454-62644473 | None:intergenic | 35.0% | |
| GATTTCGTCAAATCCCAATT+TGG | + | chr8.3:62645187-62645206 | MS.gene57562:CDS | 35.0% | |
| GCAAACAAATTCAACCCAAA+TGG | - | chr8.3:62644957-62644976 | None:intergenic | 35.0% | |
| GTCAAAGATTAATCGGCTAA+TGG | + | chr8.3:62645441-62645460 | MS.gene57562:intron | 35.0% | |
| GTGAATCAGATAACTTTAGG+AGG | - | chr8.3:62646290-62646309 | None:intergenic | 35.0% | |
| TAAACGAAACTTATCAGGGA+CGG | - | chr8.3:62646082-62646101 | None:intergenic | 35.0% | |
| TAAATGCAGGTTAACAATGC+AGG | + | chr8.3:62645915-62645934 | MS.gene57562:intron | 35.0% | |
| TACAGGGCATACAAAATGAA+TGG | + | chr8.3:62646472-62646491 | MS.gene57562:intron | 35.0% | |
| TCTTTGACTGAAGATCTGAA+CGG | - | chr8.3:62645429-62645448 | None:intergenic | 35.0% | |
| TTTCATCTTCTGTTAATGCC+TGG | - | chr8.3:62646173-62646192 | None:intergenic | 35.0% | |
| TTTGTGTGTCCTCATTGTTA+TGG | + | chr8.3:62645586-62645605 | MS.gene57562:intron | 35.0% | |
| ! | GAATCAGATAACTTTAGGAG+GGG | - | chr8.3:62646288-62646307 | None:intergenic | 35.0% |
| ! | GGTTGATGTGATTTCAATTG+TGG | + | chr8.3:62644603-62644622 | MS.gene57562:intron | 35.0% |
| ! | TCCGTGTTATTAAGATGTTC+AGG | - | chr8.3:62644804-62644823 | None:intergenic | 35.0% |
| !! | TTAAATGCATCATGATGGGT+CGG | - | chr8.3:62645528-62645547 | None:intergenic | 35.0% |
| !! | TTTGGGTTGAATTTGTTTGC+AGG | + | chr8.3:62644957-62644976 | MS.gene57562:intron | 35.0% |
| AAAGTGGAAATGTGGTGACA+CGG | - | chr8.3:62645662-62645681 | None:intergenic | 40.0% | |
| ACTGCAAGAGATGAGAAAAG+AGG | + | chr8.3:62645064-62645083 | MS.gene57562:CDS | 40.0% | |
| ACTGGAGCAAACAAAGGAAT+TGG | + | chr8.3:62644992-62645011 | MS.gene57562:CDS | 40.0% | |
| ACTTTGCTGATCTCTAACTC+TGG | + | chr8.3:62645975-62645994 | MS.gene57562:CDS | 40.0% | |
| ATATCTGTGATGACATAGCC+AGG | - | chr8.3:62646711-62646730 | None:intergenic | 40.0% | |
| ATTTGTTTGCAGGATTGCAG+TGG | + | chr8.3:62644967-62644986 | MS.gene57562:intron | 40.0% | |
| GAAAAGAGGTCTTCATGCTT+TGG | + | chr8.3:62645078-62645097 | MS.gene57562:CDS | 40.0% | |
| GAAATCACATCAACCACATC+TGG | - | chr8.3:62644598-62644617 | None:intergenic | 40.0% | |
| GAAGGTTCATTGGAAAGCAA+AGG | + | chr8.3:62646579-62646598 | MS.gene57562:CDS | 40.0% | |
| GATTGCCTTGCAAACTTTAC+TGG | + | chr8.3:62644446-62644465 | MS.gene57562:intron | 40.0% | |
| GTGAATGTATCATCCACTCT+GGG | + | chr8.3:62646318-62646337 | MS.gene57562:CDS | 40.0% | |
| GTGTGCTCATCTTACAACTT+TGG | + | chr8.3:62645758-62645777 | MS.gene57562:intron | 40.0% | |
| GTTAACAATGCAGGGATTAG+TGG | + | chr8.3:62645924-62645943 | MS.gene57562:CDS | 40.0% | |
| TAGTTGCACGATAGTCTAGA+AGG | + | chr8.3:62645292-62645311 | MS.gene57562:intron | 40.0% | |
| TATCTGTGATGACATAGCCA+GGG | - | chr8.3:62646710-62646729 | None:intergenic | 40.0% | |
| TGTGAATGTATCATCCACTC+TGG | + | chr8.3:62646317-62646336 | MS.gene57562:CDS | 40.0% | |
| TTTCAATTGTGGCTGCACTA+CGG | + | chr8.3:62644614-62644633 | MS.gene57562:intron | 40.0% | |
| ! | ACATAAGCACCACCAGTTTT+AGG | - | chr8.3:62646609-62646628 | None:intergenic | 40.0% |
| ! | TTGTTATGGCCTAGTGGTTT+TGG | + | chr8.3:62645600-62645619 | MS.gene57562:intron | 40.0% |
| !! | CATCGACTTTCTCTTCAGTT+AGG | - | chr8.3:62646527-62646546 | None:intergenic | 40.0% |
| !! | TAAATGCATCATGATGGGTC+GGG | - | chr8.3:62645527-62645546 | None:intergenic | 40.0% |
| AAAAGGAAGAGACTTCGGTC+CGG | - | chr8.3:62646833-62646852 | None:intergenic | 45.0% | |
| AAGCTAGCACTACTTCCCAA+TGG | + | chr8.3:62646783-62646802 | MS.gene57562:CDS | 45.0% | |
| AAGTGGAAATGTGGTGACAC+GGG | - | chr8.3:62645661-62645680 | None:intergenic | 45.0% | |
| ACCACTAGGCCATAACAATG+AGG | - | chr8.3:62645598-62645617 | None:intergenic | 45.0% | |
| CACATGGGAAAGTGGAAATG+TGG | - | chr8.3:62645670-62645689 | None:intergenic | 45.0% | |
| CGACCTCTAAATGGACATGA+TGG | + | chr8.3:62645496-62645515 | MS.gene57562:intron | 45.0% | |
| CTTCGGTCCGGTTATAGAAT+CGG | - | chr8.3:62646821-62646840 | None:intergenic | 45.0% | |
| GAAGATCTGAACGGCAAAGA+GGG | - | chr8.3:62645420-62645439 | None:intergenic | 45.0% | |
| GGTCTCTTAACTGCTGAAGA+AGG | + | chr8.3:62646744-62646763 | MS.gene57562:CDS | 45.0% | |
| GTTCATTGGAAAGCAAAGGC+TGG | + | chr8.3:62646583-62646602 | MS.gene57562:CDS | 45.0% | |
| TACCTCTAACTTTCCCAGAG+TGG | - | chr8.3:62646334-62646353 | None:intergenic | 45.0% | |
| TCCTCATTGTTATGGCCTAG+TGG | + | chr8.3:62645594-62645613 | MS.gene57562:intron | 45.0% | |
| TGAAGATCTGAACGGCAAAG+AGG | - | chr8.3:62645421-62645440 | None:intergenic | 45.0% | |
| ! | ATCCACTCTGGGAAAGTTAG+AGG | + | chr8.3:62646329-62646348 | MS.gene57562:CDS | 45.0% |
| ! | CATCTGGCCGATTCTATAAC+CGG | + | chr8.3:62646811-62646830 | MS.gene57562:CDS | 45.0% |
| ! | GTTAAGCAGTTAGCTTCAGC+TGG | + | chr8.3:62645025-62645044 | MS.gene57562:CDS | 45.0% |
| ! | TTGAGTATGTGTTGGCCACT+AGG | + | chr8.3:62645695-62645714 | MS.gene57562:intron | 45.0% |
| AGCGTCAATAGTGTTTGCCC+TGG | + | chr8.3:62646690-62646709 | MS.gene57562:CDS | 50.0% | |
| CGGTTATAGAATCGGCCAGA+TGG | - | chr8.3:62646813-62646832 | None:intergenic | 50.0% | |
| CTTCCCAATGGAAGTCCATC+TGG | + | chr8.3:62646795-62646814 | MS.gene57562:CDS | 50.0% | |
| GTCCTCAGACCAAAACCACT+AGG | - | chr8.3:62645612-62645631 | None:intergenic | 50.0% | |
| GTGGTGACTGGAGCAAACAA+AGG | + | chr8.3:62644986-62645005 | MS.gene57562:CDS | 50.0% | |
| TGTGGCTAATGCTGCAAGTG+TGG | + | chr8.3:62645153-62645172 | MS.gene57562:CDS | 50.0% | |
| TTGGAGACACTCAAAGCCTC+CGG | + | chr8.3:62645097-62645116 | MS.gene57562:CDS | 50.0% | |
| !! | AAAGGCTGGCCTAAAACTGG+TGG | + | chr8.3:62646597-62646616 | MS.gene57562:CDS | 50.0% |
| !! | AGCAAAGGCTGGCCTAAAAC+TGG | + | chr8.3:62646594-62646613 | MS.gene57562:CDS | 50.0% |
| CCATTTAGAGGTCGCGACCA+CGG | - | chr8.3:62645490-62645509 | None:intergenic | 55.0% | |
| GAGAGATGCATGGCCAGATG+TGG | + | chr8.3:62644582-62644601 | MS.gene57562:intron | 55.0% | |
| TGCAGGATTGCAGTGGTGAC+TGG | + | chr8.3:62644974-62644993 | MS.gene57562:intron | 55.0% | |
| ! | CGGCCAGATGGACTTCCATT+GGG | - | chr8.3:62646801-62646820 | None:intergenic | 55.0% |
| ! | TCGGCCAGATGGACTTCCAT+TGG | - | chr8.3:62646802-62646821 | None:intergenic | 55.0% |
| !!! | GGCCTAGTGGTTTTGGTCTG+AGG | + | chr8.3:62645607-62645626 | MS.gene57562:intron | 55.0% |
| CCGTGGTCGCGACCTCTAAA+TGG | + | chr8.3:62645487-62645506 | MS.gene57562:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 62644360 | 62646854 | 62644360 | ID=MS.gene57562 |
| chr8.3 | mRNA | 62644360 | 62646854 | 62644360 | ID=MS.gene57562.t1;Parent=MS.gene57562 |
| chr8.3 | exon | 62644360 | 62644379 | 62644360 | ID=MS.gene57562.t1.exon1;Parent=MS.gene57562.t1 |
| chr8.3 | CDS | 62644360 | 62644379 | 62644360 | ID=cds.MS.gene57562.t1;Parent=MS.gene57562.t1 |
| chr8.3 | exon | 62644979 | 62645225 | 62644979 | ID=MS.gene57562.t1.exon2;Parent=MS.gene57562.t1 |
| chr8.3 | CDS | 62644979 | 62645225 | 62644979 | ID=cds.MS.gene57562.t1;Parent=MS.gene57562.t1 |
| chr8.3 | exon | 62645924 | 62645998 | 62645924 | ID=MS.gene57562.t1.exon3;Parent=MS.gene57562.t1 |
| chr8.3 | CDS | 62645924 | 62645998 | 62645924 | ID=cds.MS.gene57562.t1;Parent=MS.gene57562.t1 |
| chr8.3 | exon | 62646174 | 62646350 | 62646174 | ID=MS.gene57562.t1.exon4;Parent=MS.gene57562.t1 |
| chr8.3 | CDS | 62646174 | 62646350 | 62646174 | ID=cds.MS.gene57562.t1;Parent=MS.gene57562.t1 |
| chr8.3 | exon | 62646477 | 62646854 | 62646477 | ID=MS.gene57562.t1.exon5;Parent=MS.gene57562.t1 |
| chr8.3 | CDS | 62646477 | 62646854 | 62646477 | ID=cds.MS.gene57562.t1;Parent=MS.gene57562.t1 |
| Gene Sequence |
| Protein sequence |
