Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58267.t1 | XP_003627602.1 | 96.3 | 298 | 11 | 0 | 1 | 298 | 1 | 298 | 8.50E-161 | 576.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58267.t1 | Q9M2E2 | 59.1 | 301 | 115 | 5 | 1 | 298 | 1 | 296 | 3.4e-94 | 346.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58267.t1 | G7LBU0 | 96.3 | 298 | 11 | 0 | 1 | 298 | 1 | 298 | 6.1e-161 | 576.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58267.t1 | MTR_8g032010 | 96.309 | 298 | 11 | 0 | 1 | 298 | 1 | 298 | 0.0 | 597 |
| MS.gene58267.t1 | MTR_8g031990 | 86.577 | 298 | 40 | 0 | 1 | 298 | 1 | 298 | 0.0 | 541 |
| MS.gene58267.t1 | MTR_8g032020 | 83.893 | 298 | 47 | 1 | 2 | 298 | 3 | 300 | 0.0 | 515 |
| MS.gene58267.t1 | MTR_8g032000 | 81.879 | 298 | 54 | 0 | 1 | 298 | 1 | 298 | 0.0 | 512 |
| MS.gene58267.t1 | MTR_8g031980 | 71.141 | 298 | 86 | 0 | 1 | 298 | 1 | 298 | 1.59e-157 | 441 |
| MS.gene58267.t1 | MTR_8g031960 | 71.972 | 289 | 81 | 0 | 7 | 295 | 8 | 296 | 1.33e-153 | 431 |
| MS.gene58267.t1 | MTR_8g031940 | 67.559 | 299 | 96 | 1 | 1 | 298 | 1 | 299 | 5.50e-147 | 414 |
| MS.gene58267.t1 | MTR_7g076660 | 58.054 | 298 | 113 | 3 | 1 | 298 | 1 | 286 | 8.18e-127 | 363 |
| MS.gene58267.t1 | MTR_7g076655 | 57.718 | 298 | 114 | 3 | 1 | 298 | 1 | 286 | 4.97e-126 | 361 |
| MS.gene58267.t1 | MTR_7g076660 | 58.020 | 293 | 111 | 3 | 6 | 298 | 7 | 287 | 1.78e-124 | 357 |
| MS.gene58267.t1 | MTR_8g031900 | 55.705 | 298 | 127 | 2 | 1 | 298 | 1 | 293 | 7.45e-121 | 348 |
| MS.gene58267.t1 | MTR_8g031910 | 56.522 | 299 | 117 | 3 | 1 | 298 | 1 | 287 | 3.86e-119 | 343 |
| MS.gene58267.t1 | MTR_8g031630 | 58.333 | 300 | 120 | 4 | 1 | 298 | 1 | 297 | 6.54e-119 | 343 |
| MS.gene58267.t1 | MTR_8g031600 | 58.333 | 300 | 121 | 2 | 1 | 298 | 1 | 298 | 1.33e-118 | 343 |
| MS.gene58267.t1 | MTR_8g031610 | 58.219 | 292 | 118 | 3 | 8 | 298 | 6 | 294 | 1.36e-116 | 337 |
| MS.gene58267.t1 | MTR_7g076665 | 57.143 | 301 | 120 | 5 | 1 | 298 | 1 | 295 | 4.53e-116 | 336 |
| MS.gene58267.t1 | MTR_8g031650 | 58.419 | 291 | 116 | 4 | 10 | 298 | 104 | 391 | 3.76e-113 | 332 |
| MS.gene58267.t1 | MTR_8g031650 | 61.165 | 103 | 38 | 2 | 169 | 269 | 1 | 103 | 9.52e-38 | 138 |
| MS.gene58267.t1 | MTR_7g076660 | 56.777 | 273 | 106 | 3 | 26 | 298 | 2 | 262 | 1.03e-112 | 326 |
| MS.gene58267.t1 | MTR_8g031650 | 58.419 | 291 | 116 | 4 | 10 | 298 | 270 | 557 | 2.04e-111 | 333 |
| MS.gene58267.t1 | MTR_8g031650 | 59.041 | 271 | 107 | 3 | 1 | 269 | 1 | 269 | 1.85e-105 | 318 |
| MS.gene58267.t1 | MTR_5g062280 | 52.349 | 298 | 139 | 2 | 1 | 298 | 1 | 295 | 7.41e-107 | 313 |
| MS.gene58267.t1 | MTR_8g032030 | 82.184 | 174 | 30 | 1 | 1 | 173 | 1 | 174 | 1.00e-97 | 287 |
| MS.gene58267.t1 | MTR_8g031850 | 46.644 | 298 | 116 | 3 | 1 | 298 | 1 | 255 | 1.06e-90 | 270 |
| MS.gene58267.t1 | MTR_3g079320 | 47.315 | 298 | 151 | 3 | 6 | 298 | 10 | 306 | 2.15e-90 | 271 |
| MS.gene58267.t1 | MTR_7g106800 | 47.440 | 293 | 94 | 3 | 7 | 294 | 9 | 246 | 1.58e-82 | 250 |
| MS.gene58267.t1 | MTR_3g098470 | 42.424 | 297 | 134 | 6 | 5 | 290 | 33 | 303 | 1.21e-70 | 221 |
| MS.gene58267.t1 | MTR_5g083430 | 56.140 | 171 | 75 | 0 | 128 | 298 | 14 | 184 | 2.69e-70 | 216 |
| MS.gene58267.t1 | MTR_1g031180 | 38.721 | 297 | 145 | 5 | 5 | 290 | 38 | 308 | 7.67e-60 | 193 |
| MS.gene58267.t1 | MTR_8g096060 | 36.700 | 297 | 148 | 6 | 5 | 290 | 35 | 302 | 6.46e-56 | 183 |
| MS.gene58267.t1 | MTR_4g087460 | 35.974 | 303 | 153 | 8 | 5 | 291 | 20 | 297 | 7.22e-53 | 175 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58267.t1 | AT3G61220 | 59.136 | 301 | 115 | 5 | 1 | 298 | 1 | 296 | 1.53e-125 | 360 |
| MS.gene58267.t1 | AT3G61220 | 59.661 | 295 | 111 | 5 | 7 | 298 | 14 | 303 | 1.02e-123 | 356 |
| MS.gene58267.t1 | AT3G61220 | 59.661 | 295 | 111 | 5 | 7 | 298 | 38 | 327 | 3.40e-123 | 355 |
| MS.gene58267.t1 | AT1G01800 | 56.463 | 294 | 123 | 4 | 7 | 298 | 5 | 295 | 1.64e-118 | 342 |
| MS.gene58267.t1 | AT2G24190 | 56.478 | 301 | 123 | 5 | 1 | 298 | 1 | 296 | 3.19e-118 | 342 |
| MS.gene58267.t1 | AT2G24190 | 56.949 | 295 | 119 | 5 | 7 | 298 | 12 | 301 | 8.34e-117 | 338 |
| MS.gene58267.t1 | AT1G01800 | 54.067 | 209 | 93 | 2 | 90 | 298 | 55 | 260 | 1.03e-79 | 243 |
| MS.gene58267.t1 | AT5G51030 | 38.176 | 296 | 146 | 6 | 6 | 290 | 37 | 306 | 1.06e-62 | 201 |
| MS.gene58267.t1 | AT3G59710 | 35.517 | 290 | 157 | 6 | 6 | 291 | 18 | 281 | 7.44e-53 | 175 |
| MS.gene58267.t1 | AT3G59710 | 35.862 | 290 | 156 | 7 | 6 | 291 | 28 | 291 | 1.31e-52 | 174 |
| MS.gene58267.t1 | AT5G61830 | 38.112 | 286 | 142 | 4 | 6 | 280 | 36 | 297 | 1.35e-52 | 175 |
| MS.gene58267.t1 | AT5G61830 | 38.112 | 286 | 142 | 4 | 6 | 280 | 36 | 297 | 1.35e-52 | 175 |
| MS.gene58267.t1 | AT3G59710 | 35.862 | 290 | 156 | 7 | 6 | 291 | 47 | 310 | 1.94e-52 | 174 |
Find 58 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGGCAAACTTGATATTC+TGG | 0.218733 | 8.4:+64762888 | MS.gene58267:CDS |
| GGAACCTTCTTCAAAATCTT+TGG | 0.239520 | 8.4:-64764431 | None:intergenic |
| TGCATTCAAATAAATTACTA+TGG | 0.252132 | 8.4:+64763975 | MS.gene58267:CDS |
| CATCTATTCTCTCTTCTGTT+AGG | 0.258784 | 8.4:-64764390 | None:intergenic |
| AAAAGGATGGCCTAGATATT+TGG | 0.281398 | 8.4:+64764462 | MS.gene58267:CDS |
| CTCAGGTATGCAGTGGTGAC+TGG | 0.352288 | 8.4:+64762658 | MS.gene58267:intron |
| GGAAGCAGTGCTAACTTAAC+AGG | 0.370117 | 8.4:-64764643 | None:intergenic |
| ATTAGTTTGTATCGAATGAA+TGG | 0.371859 | 8.4:+64764338 | MS.gene58267:intron |
| GAAAAGAGGTCTTCATGCTT+TGG | 0.397535 | 8.4:+64762762 | MS.gene58267:CDS |
| GTTAACAATGCTGGGATTAA+CGG | 0.398592 | 8.4:+64763502 | MS.gene58267:CDS |
| ACCAGTATTAGCAGTGATAT+CGG | 0.407089 | 8.4:-64764590 | None:intergenic |
| ACTGGATCGAACAAAGGAAT+TGG | 0.415304 | 8.4:+64762676 | MS.gene58267:CDS |
| GTCAAGTACTCATTACGAAC+GGG | 0.428471 | 8.4:+64763554 | MS.gene58267:CDS |
| CTTCCTAATGGTAGTCCATC+TGG | 0.430212 | 8.4:+64764661 | MS.gene58267:CDS |
| AAGTTAGCACTGCTTCCTAA+TGG | 0.431073 | 8.4:+64764649 | MS.gene58267:CDS |
| GTATAGGCAGCCAAATATCT+AGG | 0.437999 | 8.4:-64764472 | None:intergenic |
| GAATTGGATTTGAGATAGTA+AGG | 0.438309 | 8.4:+64762692 | MS.gene58267:CDS |
| ACACAATTGATGCAGAAGTT+AGG | 0.439194 | 8.4:-64764547 | None:intergenic |
| ACCGATATCACTGCTAATAC+TGG | 0.440027 | 8.4:+64764589 | MS.gene58267:CDS |
| CATCTGGCGTTTACTATATC+CGG | 0.447301 | 8.4:+64764677 | MS.gene58267:CDS |
| AGAAGCTTTAGCAACAGTAT+AGG | 0.466477 | 8.4:-64764488 | None:intergenic |
| GTCAATGTATCATCAGGATT+GGG | 0.471976 | 8.4:+64764059 | MS.gene58267:CDS |
| AGTCAATGTATCATCAGGAT+TGG | 0.473356 | 8.4:+64764058 | MS.gene58267:CDS |
| TGCATCAATTGTGTTTGCCC+TGG | 0.476427 | 8.4:+64764556 | MS.gene58267:CDS |
| ACGCCAGATGGACTACCATT+AGG | 0.483185 | 8.4:-64764664 | None:intergenic |
| GAAGGTTCCTTAGAAAGAAA+AGG | 0.484128 | 8.4:+64764445 | MS.gene58267:CDS |
| AGAGTAGTCAATGTATCATC+AGG | 0.484821 | 8.4:+64764053 | MS.gene58267:CDS |
| GTAAGGCAATTAGCTTCAGC+TGG | 0.490726 | 8.4:+64762709 | MS.gene58267:CDS |
| TCCATATAAAATCATCAAAA+CGG | 0.490861 | 8.4:-64764712 | None:intergenic |
| GCATTCAAATAAATTACTAT+GGG | 0.492881 | 8.4:+64763976 | MS.gene58267:CDS |
| TTAGTTTGTATCGAATGAAT+GGG | 0.494173 | 8.4:+64764339 | MS.gene58267:intron |
| ATTGTGTAGGTTAACAATGC+TGG | 0.496371 | 8.4:+64763493 | MS.gene58267:intron |
| TTGGAGACACTCAAAGCCTC+TGG | 0.509765 | 8.4:+64762781 | MS.gene58267:CDS |
| ATCAGGATTGGGCAAGATAG+AGG | 0.513958 | 8.4:+64764070 | MS.gene58267:CDS |
| ATAACTGAAGGAGGGGAAGA+AGG | 0.515357 | 8.4:-64764019 | None:intergenic |
| CGGATATAGTAAACGCCAGA+TGG | 0.522787 | 8.4:-64764676 | None:intergenic |
| GTATCGAATGAATGGGCTAA+AGG | 0.528870 | 8.4:+64764346 | MS.gene58267:CDS |
| TTGTGTAGGTTAACAATGCT+GGG | 0.550993 | 8.4:+64763494 | MS.gene58267:intron |
| AAAACGGATAGACTTCATTC+CGG | 0.560354 | 8.4:-64764696 | None:intergenic |
| GATGATACATTGACTACTCT+CGG | 0.561191 | 8.4:-64764050 | None:intergenic |
| ATGAGCAGCACCTTCTTCTA+CGG | 0.562549 | 8.4:-64764620 | None:intergenic |
| AGATGGGAGAACATAGAGAA+AGG | 0.570581 | 8.4:+64761928 | None:intergenic |
| CCTCTTTCTCAGGTATGCAG+TGG | 0.572591 | 8.4:+64762651 | MS.gene58267:intron |
| GGTCTCTTCACCGTAGAAGA+AGG | 0.573243 | 8.4:+64764610 | MS.gene58267:CDS |
| ACATCAAGAGATGAGAAAAG+AGG | 0.576041 | 8.4:+64762748 | MS.gene58267:CDS |
| GAATCAGATAACTGAAGGAG+GGG | 0.602575 | 8.4:-64764026 | None:intergenic |
| TGAATCAGATAACTGAAGGA+GGG | 0.607788 | 8.4:-64764027 | None:intergenic |
| AGTCAAGTACTCATTACGAA+CGG | 0.617703 | 8.4:+64763553 | MS.gene58267:CDS |
| GTGAATCAGATAACTGAAGG+AGG | 0.636792 | 8.4:-64764028 | None:intergenic |
| AATCTGATGAGGAATTGAGA+AGG | 0.642308 | 8.4:+64763919 | MS.gene58267:CDS |
| GTTCCTTAGAAAGAAAAGGA+TGG | 0.648199 | 8.4:+64764449 | MS.gene58267:CDS |
| CTTGCAGGCACAATCTGATG+AGG | 0.653126 | 8.4:+64763908 | MS.gene58267:intron |
| TCGGTGAATCAGATAACTGA+AGG | 0.655905 | 8.4:-64764031 | None:intergenic |
| GTGGTGACTGGATCGAACAA+AGG | 0.656701 | 8.4:+64762670 | MS.gene58267:CDS |
| CATTCAAATAAATTACTATG+GGG | 0.662211 | 8.4:+64763977 | MS.gene58267:CDS |
| AGCTTCAGCTGGAATCAAAG+TGG | 0.664366 | 8.4:+64762720 | MS.gene58267:CDS |
| AACAAAATCAGAAAGACCAG+AGG | 0.674583 | 8.4:-64762797 | None:intergenic |
| TCAAGTACTCATTACGAACG+GGG | 0.752274 | 8.4:+64763555 | MS.gene58267:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACAAATCTTATTAATAA+TGG | - | chr8.4:64762433-64762452 | None:intergenic | 10.0% |
| !! | TAACAACTAATTATTAATAT+TGG | - | chr8.4:64762469-64762488 | None:intergenic | 10.0% |
| !! | AAACATACTTAATTATATCT+TGG | - | chr8.4:64762987-64763006 | None:intergenic | 15.0% |
| !!! | TATATAGTTTGAAACTAAAT+TGG | - | chr8.4:64762184-64762203 | None:intergenic | 15.0% |
| !!! | TTTAAAACAATCAAACTTAA+GGG | - | chr8.4:64762962-64762981 | None:intergenic | 15.0% |
| !!! | TTTTAAAACAATCAAACTTA+AGG | - | chr8.4:64762963-64762982 | None:intergenic | 15.0% |
| !! | AATAACATGAACAAAATTGA+TGG | - | chr8.4:64762238-64762257 | None:intergenic | 20.0% |
| !! | CATTCAAATAAATTACTATG+GGG | + | chr8.4:64763977-64763996 | MS.gene58267:CDS | 20.0% |
| !! | CTAGTAAAATGATCTTTAAT+GGG | - | chr8.4:64763766-64763785 | None:intergenic | 20.0% |
| !! | GCATTCAAATAAATTACTAT+GGG | + | chr8.4:64763976-64763995 | MS.gene58267:CDS | 20.0% |
| !! | TAATGGGAAATATTGATATT+TGG | - | chr8.4:64763750-64763769 | None:intergenic | 20.0% |
| !! | TCTAGTAAAATGATCTTTAA+TGG | - | chr8.4:64763767-64763786 | None:intergenic | 20.0% |
| !! | TGCATTCAAATAAATTACTA+TGG | + | chr8.4:64763975-64763994 | MS.gene58267:CDS | 20.0% |
| !! | TTCAAACATATGTATATTCA+TGG | + | chr8.4:64762367-64762386 | MS.gene58267:intron | 20.0% |
| !!! | AAATCATTACTCATTTTTCA+AGG | + | chr8.4:64764155-64764174 | MS.gene58267:intron | 20.0% |
| !!! | AACAGATTTTCATATACTTT+AGG | + | chr8.4:64762278-64762297 | MS.gene58267:intron | 20.0% |
| !!! | AACATCAATGTTGTTATTTT+CGG | - | chr8.4:64763883-64763902 | None:intergenic | 20.0% |
| !!! | ATAATGCAAATTTAGTTCAA+AGG | - | chr8.4:64764293-64764312 | None:intergenic | 20.0% |
| !!! | ATTCCTTTAATGTATGTTTT+AGG | - | chr8.4:64763033-64763052 | None:intergenic | 20.0% |
| !!! | GATTTTATCAAATCTCAATT+TGG | + | chr8.4:64762871-64762890 | MS.gene58267:CDS | 20.0% |
| ! | ACATTAAAGGAATGCATATT+TGG | + | chr8.4:64763040-64763059 | MS.gene58267:intron | 25.0% |
| ! | ACTCCTAAAACATACATTAA+AGG | + | chr8.4:64763027-64763046 | MS.gene58267:intron | 25.0% |
| ! | ACTTTAGTAGAGTAAATTGA+TGG | - | chr8.4:64762149-64762168 | None:intergenic | 25.0% |
| ! | ATCAACTTTGAGTAATAACA+AGG | - | chr8.4:64762031-64762050 | None:intergenic | 25.0% |
| ! | CATATCTTTGTCTAGTATTA+TGG | + | chr8.4:64763820-64763839 | MS.gene58267:intron | 25.0% |
| ! | TATACCATAGACTAAATTGA+TGG | + | chr8.4:64762321-64762340 | MS.gene58267:intron | 25.0% |
| ! | TCAAGAAATGTATGAAATTG+AGG | - | chr8.4:64763674-64763693 | None:intergenic | 25.0% |
| ! | TCTTATTAATAATGGTCCTT+TGG | - | chr8.4:64762425-64762444 | None:intergenic | 25.0% |
| !!! | ATTAGTTTGTATCGAATGAA+TGG | + | chr8.4:64764338-64764357 | MS.gene58267:intron | 25.0% |
| !!! | CAAATTGACTACTTTTTATC+TGG | - | chr8.4:64763176-64763195 | None:intergenic | 25.0% |
| !!! | TTAGTTTGTATCGAATGAAT+GGG | + | chr8.4:64764339-64764358 | MS.gene58267:intron | 25.0% |
| !!! | TTTACCAAAGATTTTGAAGA+AGG | + | chr8.4:64764427-64764446 | MS.gene58267:CDS | 25.0% |
| ACTAGATTCATAACATGTGT+TGG | - | chr8.4:64763591-64763610 | None:intergenic | 30.0% | |
| ATTTGGCAAACTTGATATTC+TGG | + | chr8.4:64762888-64762907 | MS.gene58267:CDS | 30.0% | |
| CATTCAAAGAAAATTCCACA+AGG | - | chr8.4:64763434-64763453 | None:intergenic | 30.0% | |
| GAAACCATCAATTTAGTCTA+TGG | - | chr8.4:64762328-64762347 | None:intergenic | 30.0% | |
| TCAATCAGTTATAATCCTTG+TGG | + | chr8.4:64763416-64763435 | MS.gene58267:intron | 30.0% | |
| TCACAAAACAAAGAGAAACT+AGG | - | chr8.4:64763325-64763344 | None:intergenic | 30.0% | |
| ! | GAATTGGATTTGAGATAGTA+AGG | + | chr8.4:64762692-64762711 | MS.gene58267:CDS | 30.0% |
| ! | TATGTATATTCATGGTGTTG+AGG | + | chr8.4:64762375-64762394 | MS.gene58267:intron | 30.0% |
| ! | TGATTTGTGTTGTTCATTGT+TGG | + | chr8.4:64762100-64762119 | MS.gene58267:intron | 30.0% |
| ! | TGTTGGATTGACATATTTTC+TGG | + | chr8.4:64762117-64762136 | MS.gene58267:intron | 30.0% |
| ! | TGTTTTTCATCAACTAGATG+TGG | + | chr8.4:64762819-64762838 | MS.gene58267:CDS | 30.0% |
| !! | ATACTTTAGGATTGAGTTGA+TGG | + | chr8.4:64762291-64762310 | MS.gene58267:intron | 30.0% |
| !! | CTGATTGAAACAAAAGTGTT+TGG | - | chr8.4:64763404-64763423 | None:intergenic | 30.0% |
| !! | TAATAATGGTCCTTTGGTTT+TGG | - | chr8.4:64762419-64762438 | None:intergenic | 30.0% |
| AAAACGGATAGACTTCATTC+CGG | - | chr8.4:64764699-64764718 | None:intergenic | 35.0% | |
| AAAAGGATGGCCTAGATATT+TGG | + | chr8.4:64764462-64764481 | MS.gene58267:CDS | 35.0% | |
| AAAGAGAAACTAGGTTAGCA+AGG | - | chr8.4:64763316-64763335 | None:intergenic | 35.0% | |
| AACAAAATCAGAAAGACCAG+AGG | - | chr8.4:64762800-64762819 | None:intergenic | 35.0% | |
| AACTTAAGGGAGTAGAAAAC+AGG | - | chr8.4:64762949-64762968 | None:intergenic | 35.0% | |
| AATCTGATGAGGAATTGAGA+AGG | + | chr8.4:64763919-64763938 | MS.gene58267:CDS | 35.0% | |
| ACACAATTGATGCAGAAGTT+AGG | - | chr8.4:64764550-64764569 | None:intergenic | 35.0% | |
| ACATCAAGAGATGAGAAAAG+AGG | + | chr8.4:64762748-64762767 | MS.gene58267:CDS | 35.0% | |
| ACCAGTATTAGCAGTGATAT+CGG | - | chr8.4:64764593-64764612 | None:intergenic | 35.0% | |
| AGAGTAGTCAATGTATCATC+AGG | + | chr8.4:64764053-64764072 | MS.gene58267:CDS | 35.0% | |
| AGTCAAGTACTCATTACGAA+CGG | + | chr8.4:64763553-64763572 | MS.gene58267:CDS | 35.0% | |
| AGTCAATGTATCATCAGGAT+TGG | + | chr8.4:64764058-64764077 | MS.gene58267:CDS | 35.0% | |
| ATCAATCAGACTCAAACACA+TGG | - | chr8.4:64762609-64762628 | None:intergenic | 35.0% | |
| ATTGTGTAGGTTAACAATGC+TGG | + | chr8.4:64763493-64763512 | MS.gene58267:intron | 35.0% | |
| CAACAACGATTGTATTGTGT+AGG | + | chr8.4:64763480-64763499 | MS.gene58267:intron | 35.0% | |
| CATCTATTCTCTCTTCTGTT+AGG | - | chr8.4:64764393-64764412 | None:intergenic | 35.0% | |
| GAAGGTTCCTTAGAAAGAAA+AGG | + | chr8.4:64764445-64764464 | MS.gene58267:CDS | 35.0% | |
| GGAACCTTCTTCAAAATCTT+TGG | - | chr8.4:64764434-64764453 | None:intergenic | 35.0% | |
| GTCAATGTATCATCAGGATT+GGG | + | chr8.4:64764059-64764078 | MS.gene58267:CDS | 35.0% | |
| GTTAACAATGCTGGGATTAA+CGG | + | chr8.4:64763502-64763521 | MS.gene58267:CDS | 35.0% | |
| GTTCCTTAGAAAGAAAAGGA+TGG | + | chr8.4:64764449-64764468 | MS.gene58267:CDS | 35.0% | |
| TATCCATCATGCATATGTAC+TGG | + | chr8.4:64763703-64763722 | MS.gene58267:intron | 35.0% | |
| TGAATCAGATAACTGAAGGA+GGG | - | chr8.4:64764030-64764049 | None:intergenic | 35.0% | |
| TTGTGTAGGTTAACAATGCT+GGG | + | chr8.4:64763494-64763513 | MS.gene58267:intron | 35.0% | |
| TTTCCAGTACATATGCATGA+TGG | - | chr8.4:64763709-64763728 | None:intergenic | 35.0% | |
| TTTGTGATGCTCATCTTGTT+AGG | + | chr8.4:64763338-64763357 | MS.gene58267:intron | 35.0% | |
| ! | AAGATTTTCCTGATCAGGAA+AGG | - | chr8.4:64762008-64762027 | None:intergenic | 35.0% |
| ! | AGAAGCTTTAGCAACAGTAT+AGG | - | chr8.4:64764491-64764510 | None:intergenic | 35.0% |
| ! | GATGATACATTGACTACTCT+CGG | - | chr8.4:64764053-64764072 | None:intergenic | 35.0% |
| !! | CATTGATGTTCTTAACTTGC+AGG | + | chr8.4:64763893-64763912 | MS.gene58267:intron | 35.0% |
| !!! | ACCAACAGTTTTTTCCGTTA+AGG | + | chr8.4:64763365-64763384 | MS.gene58267:intron | 35.0% |
| !!! | ATATCGGTTTTGACATAACC+AGG | - | chr8.4:64764577-64764596 | None:intergenic | 35.0% |
| !!! | CAACAGTTTTTTCCGTTAAG+GGG | + | chr8.4:64763367-64763386 | MS.gene58267:intron | 35.0% |
| !!! | CCAACAGTTTTTTCCGTTAA+GGG | + | chr8.4:64763366-64763385 | MS.gene58267:intron | 35.0% |
| !!! | TATCGGTTTTGACATAACCA+GGG | - | chr8.4:64764576-64764595 | None:intergenic | 35.0% |
| AAGTTAGCACTGCTTCCTAA+TGG | + | chr8.4:64764649-64764668 | MS.gene58267:CDS | 40.0% | |
| ACCGATATCACTGCTAATAC+TGG | + | chr8.4:64764589-64764608 | MS.gene58267:CDS | 40.0% | |
| ACTGGATCGAACAAAGGAAT+TGG | + | chr8.4:64762676-64762695 | MS.gene58267:CDS | 40.0% | |
| AGAAAGAGGAAGAACACACA+AGG | - | chr8.4:64762640-64762659 | None:intergenic | 40.0% | |
| ATCAGACTCAAACACATGGT+TGG | - | chr8.4:64762605-64762624 | None:intergenic | 40.0% | |
| CATACAACAGTAGTCAACTG+TGG | + | chr8.4:64763251-64763270 | MS.gene58267:intron | 40.0% | |
| CATCTGGCGTTTACTATATC+CGG | + | chr8.4:64764677-64764696 | MS.gene58267:CDS | 40.0% | |
| CCCTTAACGGAAAAAACTGT+TGG | - | chr8.4:64763369-64763388 | None:intergenic | 40.0% | |
| CTAAGTGGTATAGGAATTGG+AGG | - | chr8.4:64762534-64762553 | None:intergenic | 40.0% | |
| GAAAAGAGGTCTTCATGCTT+TGG | + | chr8.4:64762762-64762781 | MS.gene58267:CDS | 40.0% | |
| GAATCAGATAACTGAAGGAG+GGG | - | chr8.4:64764029-64764048 | None:intergenic | 40.0% | |
| GAGCTAAGTGGTATAGGAAT+TGG | - | chr8.4:64762537-64762556 | None:intergenic | 40.0% | |
| GATAATCTCCAACCCCTTAA+CGG | - | chr8.4:64763382-64763401 | None:intergenic | 40.0% | |
| GTAGTCAATTTGATACGAGC+AGG | + | chr8.4:64763184-64763203 | MS.gene58267:intron | 40.0% | |
| GTATAGGCAGCCAAATATCT+AGG | - | chr8.4:64764475-64764494 | None:intergenic | 40.0% | |
| GTCAAGTACTCATTACGAAC+GGG | + | chr8.4:64763554-64763573 | MS.gene58267:CDS | 40.0% | |
| GTGAATCAGATAACTGAAGG+AGG | - | chr8.4:64764031-64764050 | None:intergenic | 40.0% | |
| TCAAGTACTCATTACGAACG+GGG | + | chr8.4:64763555-64763574 | MS.gene58267:CDS | 40.0% | |
| TCGGTGAATCAGATAACTGA+AGG | - | chr8.4:64764034-64764053 | None:intergenic | 40.0% | |
| TGGTTTGAGCTAAGTGGTAT+AGG | - | chr8.4:64762543-64762562 | None:intergenic | 40.0% | |
| ! | AGGCCATCCTTTTCTTTCTA+AGG | - | chr8.4:64764455-64764474 | None:intergenic | 40.0% |
| ! | ATCATCGTTGTCATTTACCG+TGG | + | chr8.4:64763282-64763301 | MS.gene58267:intron | 40.0% |
| ! | ATTCATGGTGTTGAGGTTGA+TGG | + | chr8.4:64762382-64762401 | MS.gene58267:intron | 40.0% |
| ! | CAAGGAAGATTTTCCTGATC+AGG | - | chr8.4:64762013-64762032 | None:intergenic | 40.0% |
| ! | TTAGCAAGGTTTTCTGTCCA+CGG | - | chr8.4:64763302-64763321 | None:intergenic | 40.0% |
| !! | GTATCGAATGAATGGGCTAA+AGG | + | chr8.4:64764346-64764365 | MS.gene58267:CDS | 40.0% |
| !!! | AGTTTTTTCCGTTAAGGGGT+TGG | + | chr8.4:64763371-64763390 | MS.gene58267:intron | 40.0% |
| AGCTTCAGCTGGAATCAAAG+TGG | + | chr8.4:64762720-64762739 | MS.gene58267:CDS | 45.0% | |
| AGGTTTATTCCCCCTATCGA+TGG | + | chr8.4:64763107-64763126 | MS.gene58267:intron | 45.0% | |
| AGTCAAACTCCCATCGATAG+GGG | - | chr8.4:64763120-64763139 | None:intergenic | 45.0% | |
| ATAACTGAAGGAGGGGAAGA+AGG | - | chr8.4:64764022-64764041 | None:intergenic | 45.0% | |
| ATCAGGATTGGGCAAGATAG+AGG | + | chr8.4:64764070-64764089 | MS.gene58267:CDS | 45.0% | |
| ATGAGCAGCACCTTCTTCTA+CGG | - | chr8.4:64764623-64764642 | None:intergenic | 45.0% | |
| ATGCCAACATCGTATTGCGA+GGG | - | chr8.4:64762580-64762599 | None:intergenic | 45.0% | |
| CGGATATAGTAAACGCCAGA+TGG | - | chr8.4:64764679-64764698 | None:intergenic | 45.0% | |
| CTTCCTAATGGTAGTCCATC+TGG | + | chr8.4:64764661-64764680 | MS.gene58267:CDS | 45.0% | |
| CTTCGCTCGAGTTTGAATCT+AGG | + | chr8.4:64762507-64762526 | MS.gene58267:intron | 45.0% | |
| GAGTCAAACTCCCATCGATA+GGG | - | chr8.4:64763121-64763140 | None:intergenic | 45.0% | |
| GGAAGCAGTGCTAACTTAAC+AGG | - | chr8.4:64764646-64764665 | None:intergenic | 45.0% | |
| GGTTTATTCCCCCTATCGAT+GGG | + | chr8.4:64763108-64763127 | MS.gene58267:intron | 45.0% | |
| GTGTGTTCTTCCTCTTTCTC+AGG | + | chr8.4:64762641-64762660 | MS.gene58267:intron | 45.0% | |
| TATGCCAACATCGTATTGCG+AGG | - | chr8.4:64762581-64762600 | None:intergenic | 45.0% | |
| TGCATCAATTGTGTTTGCCC+TGG | + | chr8.4:64764556-64764575 | MS.gene58267:CDS | 45.0% | |
| TTTCCTGATCAGGAAAGGTG+TGG | - | chr8.4:64762003-64762022 | None:intergenic | 45.0% | |
| ! | CTCATCTGGTTTGAGCTAAG+TGG | - | chr8.4:64762549-64762568 | None:intergenic | 45.0% |
| ! | CTTTTTATCTGGACCGTCGA+AGG | - | chr8.4:64763165-64763184 | None:intergenic | 45.0% |
| ! | GTAAGGCAATTAGCTTCAGC+TGG | + | chr8.4:64762709-64762728 | MS.gene58267:CDS | 45.0% |
| ! | TTCCTGATCAGGAAAGGTGT+GGG | - | chr8.4:64762002-64762021 | None:intergenic | 45.0% |
| AACATCGTATTGCGAGGGCT+AGG | - | chr8.4:64762575-64762594 | None:intergenic | 50.0% | |
| ATTGAGGATCCAGTCAGTGC+AGG | - | chr8.4:64763658-64763677 | None:intergenic | 50.0% | |
| CCACTGCATACCTGAGAAAG+AGG | - | chr8.4:64762654-64762673 | None:intergenic | 50.0% | |
| CCTCTTTCTCAGGTATGCAG+TGG | + | chr8.4:64762651-64762670 | MS.gene58267:intron | 50.0% | |
| CGAGTCAAACTCCCATCGAT+AGG | - | chr8.4:64763122-64763141 | None:intergenic | 50.0% | |
| CTTGCAGGCACAATCTGATG+AGG | + | chr8.4:64763908-64763927 | MS.gene58267:intron | 50.0% | |
| GATGGTGAGGCCAAAACCAA+AGG | + | chr8.4:64762406-64762425 | MS.gene58267:intron | 50.0% | |
| GCCATATTCCTCCTGTCTTC+CGG | + | chr8.4:64763062-64763081 | MS.gene58267:intron | 50.0% | |
| GGAATAAACCTCCACACGAG+AGG | - | chr8.4:64763098-64763117 | None:intergenic | 50.0% | |
| GGGGTCAACGGATACAAAAG+AGG | - | chr8.4:64761982-64762001 | None:intergenic | 50.0% | |
| GGTCTCTTCACCGTAGAAGA+AGG | + | chr8.4:64764610-64764629 | MS.gene58267:CDS | 50.0% | |
| GTCAAACTCCCATCGATAGG+GGG | - | chr8.4:64763119-64763138 | None:intergenic | 50.0% | |
| GTGGTGACTGGATCGAACAA+AGG | + | chr8.4:64762670-64762689 | MS.gene58267:CDS | 50.0% | |
| TAGCCCTCGCAATACGATGT+TGG | + | chr8.4:64762574-64762593 | MS.gene58267:intron | 50.0% | |
| TCCGGAAGACAGGAGGAATA+TGG | - | chr8.4:64763066-64763085 | None:intergenic | 50.0% | |
| TTGAGGATCCAGTCAGTGCA+GGG | - | chr8.4:64763657-64763676 | None:intergenic | 50.0% | |
| TTGGAGACACTCAAAGCCTC+TGG | + | chr8.4:64762781-64762800 | MS.gene58267:CDS | 50.0% | |
| ! | TCCTGATCAGGAAAGGTGTG+GGG | - | chr8.4:64762001-64762020 | None:intergenic | 50.0% |
| ! | TGATACAACCCTGCACTGAC+TGG | + | chr8.4:64763646-64763665 | MS.gene58267:intron | 50.0% |
| !! | ACGCCAGATGGACTACCATT+AGG | - | chr8.4:64764667-64764686 | None:intergenic | 50.0% |
| !! | GGTGTTGAGGTTGATGGAGA+TGG | + | chr8.4:64762388-64762407 | MS.gene58267:intron | 50.0% |
| !! | TGAGGTTGATGGAGATGGTG+AGG | + | chr8.4:64762393-64762412 | MS.gene58267:intron | 50.0% |
| AAACCTCCACACGAGAGGAG+AGG | - | chr8.4:64763093-64763112 | None:intergenic | 55.0% | |
| AACCTCCACACGAGAGGAGA+GGG | - | chr8.4:64763092-64763111 | None:intergenic | 55.0% | |
| ACCCCACACCTTTCCTGATC+AGG | + | chr8.4:64761997-64762016 | MS.gene58267:intron | 55.0% | |
| CGAGGGCTAGGTAACTCATC+TGG | - | chr8.4:64762563-64762582 | None:intergenic | 55.0% | |
| CTCAGGTATGCAGTGGTGAC+TGG | + | chr8.4:64762658-64762677 | MS.gene58267:intron | 55.0% | |
| TATCTGGACCGTCGAAGGTG+AGG | - | chr8.4:64763160-64763179 | None:intergenic | 55.0% | |
| ! | CAGGAAAGGTGTGGGGTCAA+CGG | - | chr8.4:64761994-64762013 | None:intergenic | 55.0% |
| AGGGAGCTCCGGAAGACAGG+AGG | - | chr8.4:64763073-64763092 | None:intergenic | 65.0% | |
| CACCGCCTCCTCACCTTCGA+CGG | + | chr8.4:64763149-64763168 | MS.gene58267:intron | 65.0% | |
| CACGAGAGGAGAGGGAGCTC+CGG | - | chr8.4:64763084-64763103 | None:intergenic | 65.0% | |
| CTCCCTCTCCTCTCGTGTGG+AGG | + | chr8.4:64763087-64763106 | MS.gene58267:intron | 65.0% | |
| CTGGACCGTCGAAGGTGAGG+AGG | - | chr8.4:64763157-64763176 | None:intergenic | 65.0% | |
| GACCGTCGAAGGTGAGGAGG+CGG | - | chr8.4:64763154-64763173 | None:intergenic | 65.0% | |
| GAGAGGGAGCTCCGGAAGAC+AGG | - | chr8.4:64763076-64763095 | None:intergenic | 65.0% | |
| GAGCTCCCTCTCCTCTCGTG+TGG | + | chr8.4:64763084-64763103 | MS.gene58267:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 64761930 | 64764720 | 64761930 | ID=MS.gene58267 |
| chr8.4 | mRNA | 64761930 | 64764720 | 64761930 | ID=MS.gene58267.t1;Parent=MS.gene58267 |
| chr8.4 | exon | 64761930 | 64761949 | 64761930 | ID=MS.gene58267.t1.exon1;Parent=MS.gene58267.t1 |
| chr8.4 | CDS | 64761930 | 64761949 | 64761930 | ID=cds.MS.gene58267.t1;Parent=MS.gene58267.t1 |
| chr8.4 | exon | 64762663 | 64762909 | 64762663 | ID=MS.gene58267.t1.exon2;Parent=MS.gene58267.t1 |
| chr8.4 | CDS | 64762663 | 64762909 | 64762663 | ID=cds.MS.gene58267.t1;Parent=MS.gene58267.t1 |
| chr8.4 | exon | 64763502 | 64763576 | 64763502 | ID=MS.gene58267.t1.exon3;Parent=MS.gene58267.t1 |
| chr8.4 | CDS | 64763502 | 64763576 | 64763502 | ID=cds.MS.gene58267.t1;Parent=MS.gene58267.t1 |
| chr8.4 | exon | 64763915 | 64764091 | 64763915 | ID=MS.gene58267.t1.exon4;Parent=MS.gene58267.t1 |
| chr8.4 | CDS | 64763915 | 64764091 | 64763915 | ID=cds.MS.gene58267.t1;Parent=MS.gene58267.t1 |
| chr8.4 | exon | 64764343 | 64764720 | 64764343 | ID=MS.gene58267.t1.exon5;Parent=MS.gene58267.t1 |
| chr8.4 | CDS | 64764343 | 64764720 | 64764343 | ID=cds.MS.gene58267.t1;Parent=MS.gene58267.t1 |
| Gene Sequence |
| Protein sequence |
