Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019536.t1 | XP_003627599.1 | 96.6 | 298 | 10 | 0 | 1 | 298 | 1 | 298 | 3.80E-153 | 550.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019536.t1 | Q9M2E2 | 57.4 | 296 | 116 | 5 | 7 | 298 | 7 | 296 | 1.6e-86 | 320.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019536.t1 | G7J257 | 96.6 | 298 | 10 | 0 | 1 | 298 | 1 | 298 | 2.8e-153 | 550.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019536.t1 | MTR_8g031980 | 96.644 | 298 | 10 | 0 | 1 | 298 | 1 | 298 | 0.0 | 581 |
| MS.gene019536.t1 | MTR_8g031960 | 89.273 | 289 | 31 | 0 | 7 | 295 | 8 | 296 | 0.0 | 529 |
| MS.gene019536.t1 | MTR_8g031940 | 79.264 | 299 | 61 | 1 | 1 | 298 | 1 | 299 | 1.25e-171 | 477 |
| MS.gene019536.t1 | MTR_8g031990 | 71.477 | 298 | 85 | 0 | 1 | 298 | 1 | 298 | 8.87e-157 | 439 |
| MS.gene019536.t1 | MTR_8g032000 | 70.470 | 298 | 88 | 0 | 1 | 298 | 1 | 298 | 5.01e-156 | 437 |
| MS.gene019536.t1 | MTR_8g032020 | 71.477 | 298 | 84 | 1 | 2 | 298 | 3 | 300 | 6.41e-156 | 437 |
| MS.gene019536.t1 | MTR_8g032010 | 69.799 | 298 | 90 | 0 | 1 | 298 | 1 | 298 | 1.48e-154 | 434 |
| MS.gene019536.t1 | MTR_7g076660 | 59.396 | 298 | 109 | 3 | 1 | 298 | 1 | 286 | 1.54e-124 | 357 |
| MS.gene019536.t1 | MTR_7g076660 | 59.727 | 293 | 106 | 3 | 6 | 298 | 7 | 287 | 8.87e-124 | 355 |
| MS.gene019536.t1 | MTR_7g076655 | 58.054 | 298 | 113 | 3 | 1 | 298 | 1 | 286 | 1.04e-121 | 350 |
| MS.gene019536.t1 | MTR_8g031600 | 57.534 | 292 | 120 | 2 | 9 | 298 | 9 | 298 | 5.02e-116 | 336 |
| MS.gene019536.t1 | MTR_8g031630 | 56.667 | 300 | 125 | 4 | 1 | 298 | 1 | 297 | 3.51e-115 | 334 |
| MS.gene019536.t1 | MTR_8g031910 | 57.191 | 299 | 115 | 3 | 1 | 298 | 1 | 287 | 4.08e-115 | 333 |
| MS.gene019536.t1 | MTR_8g031610 | 56.757 | 296 | 124 | 3 | 4 | 298 | 2 | 294 | 1.98e-114 | 332 |
| MS.gene019536.t1 | MTR_8g031900 | 54.362 | 298 | 131 | 2 | 1 | 298 | 1 | 293 | 1.04e-113 | 330 |
| MS.gene019536.t1 | MTR_7g076665 | 57.860 | 299 | 121 | 3 | 1 | 298 | 1 | 295 | 1.50e-113 | 330 |
| MS.gene019536.t1 | MTR_7g076660 | 58.974 | 273 | 100 | 3 | 26 | 298 | 2 | 262 | 4.03e-113 | 327 |
| MS.gene019536.t1 | MTR_5g062280 | 54.153 | 301 | 129 | 3 | 1 | 298 | 1 | 295 | 8.33e-112 | 325 |
| MS.gene019536.t1 | MTR_8g031650 | 57.388 | 291 | 119 | 4 | 10 | 298 | 104 | 391 | 1.01e-111 | 328 |
| MS.gene019536.t1 | MTR_8g031650 | 59.223 | 103 | 40 | 2 | 169 | 269 | 1 | 103 | 7.00e-36 | 133 |
| MS.gene019536.t1 | MTR_8g031650 | 57.388 | 291 | 119 | 4 | 10 | 298 | 270 | 557 | 1.14e-109 | 329 |
| MS.gene019536.t1 | MTR_8g031650 | 57.196 | 271 | 112 | 3 | 1 | 269 | 1 | 269 | 1.41e-101 | 308 |
| MS.gene019536.t1 | MTR_3g079320 | 48.333 | 300 | 149 | 3 | 4 | 298 | 8 | 306 | 2.45e-90 | 271 |
| MS.gene019536.t1 | MTR_8g032030 | 76.437 | 174 | 40 | 1 | 1 | 173 | 1 | 174 | 2.27e-86 | 258 |
| MS.gene019536.t1 | MTR_8g031850 | 45.638 | 298 | 119 | 3 | 1 | 298 | 1 | 255 | 7.27e-86 | 258 |
| MS.gene019536.t1 | MTR_7g106800 | 49.147 | 293 | 89 | 4 | 7 | 294 | 9 | 246 | 3.13e-85 | 257 |
| MS.gene019536.t1 | MTR_5g083430 | 58.721 | 172 | 71 | 0 | 127 | 298 | 13 | 184 | 1.02e-69 | 214 |
| MS.gene019536.t1 | MTR_3g098470 | 40.461 | 304 | 143 | 7 | 5 | 296 | 33 | 310 | 4.58e-68 | 214 |
| MS.gene019536.t1 | MTR_1g031180 | 38.158 | 304 | 150 | 6 | 5 | 296 | 38 | 315 | 9.19e-61 | 196 |
| MS.gene019536.t1 | MTR_4g087460 | 38.411 | 302 | 145 | 9 | 5 | 290 | 20 | 296 | 2.42e-59 | 192 |
| MS.gene019536.t1 | MTR_8g096060 | 36.184 | 304 | 153 | 7 | 5 | 296 | 35 | 309 | 3.88e-55 | 181 |
| MS.gene019536.t1 | MTR_3g085740 | 23.954 | 263 | 129 | 7 | 4 | 263 | 75 | 269 | 5.74e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019536.t1 | AT1G01800 | 57.432 | 296 | 121 | 4 | 5 | 298 | 3 | 295 | 2.95e-119 | 344 |
| MS.gene019536.t1 | AT3G61220 | 57.432 | 296 | 116 | 5 | 7 | 298 | 7 | 296 | 1.50e-118 | 342 |
| MS.gene019536.t1 | AT3G61220 | 57.432 | 296 | 116 | 5 | 7 | 298 | 14 | 303 | 3.15e-118 | 342 |
| MS.gene019536.t1 | AT3G61220 | 57.432 | 296 | 116 | 5 | 7 | 298 | 38 | 327 | 6.38e-118 | 342 |
| MS.gene019536.t1 | AT2G24190 | 54.817 | 301 | 128 | 5 | 1 | 298 | 1 | 296 | 3.19e-113 | 329 |
| MS.gene019536.t1 | AT2G24190 | 55.593 | 295 | 123 | 5 | 7 | 298 | 12 | 301 | 5.19e-113 | 328 |
| MS.gene019536.t1 | AT1G01800 | 55.981 | 209 | 89 | 2 | 90 | 298 | 55 | 260 | 1.75e-80 | 244 |
| MS.gene019536.t1 | AT5G51030 | 37.624 | 303 | 151 | 6 | 6 | 296 | 37 | 313 | 6.19e-65 | 206 |
| MS.gene019536.t1 | AT3G59710 | 40.000 | 290 | 144 | 7 | 5 | 290 | 17 | 280 | 5.00e-63 | 201 |
| MS.gene019536.t1 | AT3G59710 | 40.000 | 290 | 144 | 7 | 5 | 290 | 27 | 290 | 7.77e-63 | 201 |
| MS.gene019536.t1 | AT3G59710 | 40.000 | 290 | 144 | 7 | 5 | 290 | 46 | 309 | 1.47e-62 | 201 |
| MS.gene019536.t1 | AT5G61830 | 37.829 | 304 | 152 | 6 | 6 | 296 | 36 | 315 | 4.59e-59 | 191 |
| MS.gene019536.t1 | AT5G61830 | 37.829 | 304 | 152 | 6 | 6 | 296 | 36 | 315 | 4.59e-59 | 191 |
| MS.gene019536.t1 | AT4G09750 | 26.948 | 308 | 150 | 9 | 4 | 294 | 41 | 290 | 2.16e-12 | 67.0 |
| MS.gene019536.t1 | AT2G29150 | 28.667 | 300 | 132 | 10 | 3 | 298 | 15 | 236 | 2.29e-11 | 63.5 |
Find 55 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATATCAAGTTTGCCAAAT+TGG | 0.158459 | 8.1:-70398500 | None:intergenic |
| ATTTGGCAAACTTGATATTC+TGG | 0.220906 | 8.1:+70398503 | MS.gene019536:CDS |
| GATGATACATTCACAATTCT+TGG | 0.302082 | 8.1:-70399608 | None:intergenic |
| GATTTCGTCAAATCCCAATT+TGG | 0.312138 | 8.1:+70398486 | MS.gene019536:CDS |
| TTGGTGAATCAGATAACTTT+AGG | 0.321611 | 8.1:-70399589 | None:intergenic |
| TGCTTGCAAATAAACTATTA+TGG | 0.347231 | 8.1:+70399533 | MS.gene019536:CDS |
| AACTGAAGATGAAAAGAATA+AGG | 0.349020 | 8.1:+70399478 | MS.gene019536:CDS |
| AATATCAAGTTTGCCAAATT+GGG | 0.350754 | 8.1:-70398499 | None:intergenic |
| CATCGACTTTCTCTTCAGTT+AGG | 0.370807 | 8.1:-70400521 | None:intergenic |
| ACTGGAGCAAACAAAGGAAT+TGG | 0.400758 | 8.1:+70398291 | MS.gene019536:CDS |
| TGCAGGATTGCAGTGGTGAC+TGG | 0.409146 | 8.1:+70398273 | MS.gene019536:intron |
| ATCCACTCTGGGAAAGTTAG+AGG | 0.414763 | 8.1:+70399628 | MS.gene019536:CDS |
| TTTCTACAAGATTACAAAGA+AGG | 0.423862 | 8.1:+70400558 | MS.gene019536:CDS |
| GTTAACAATGCAGGGATTAG+TGG | 0.425251 | 8.1:+70399223 | MS.gene019536:CDS |
| AGATTACAAAGAAGGTTCAT+TGG | 0.427155 | 8.1:+70400566 | MS.gene019536:CDS |
| AGCAAAGGCTGGCCTAAAAC+TGG | 0.443573 | 8.1:+70400591 | MS.gene019536:CDS |
| ACACTATTGATGGTTAAAGT+AGG | 0.449579 | 8.1:-70400678 | None:intergenic |
| TTGGAGACACTCAAAGCCTC+TGG | 0.450185 | 8.1:+70398396 | MS.gene019536:CDS |
| ACCAGGGCAAACACTATTGA+TGG | 0.455648 | 8.1:-70400688 | None:intergenic |
| ACAGATATTACTGCTAATAC+TGG | 0.462505 | 8.1:+70400720 | MS.gene019536:CDS |
| GTTAAGCAGTTAGCTTCAGC+TGG | 0.466868 | 8.1:+70398324 | MS.gene019536:CDS |
| TAAATGCAGGTTAACAATGC+AGG | 0.468436 | 8.1:+70399214 | MS.gene019536:intron |
| CATCCGGCCGATTCTATAAC+CGG | 0.470493 | 8.1:+70400808 | MS.gene019536:CDS |
| TACAGGGCATACAAAATGAA+TGG | 0.493728 | 8.1:+70400469 | MS.gene019536:intron |
| ATAGTATAGTACTAATCAAA+AGG | 0.495601 | 8.1:-70400844 | None:intergenic |
| TGTGAATGTATCATCCACTC+TGG | 0.506460 | 8.1:+70399616 | MS.gene019536:CDS |
| TCGGCCGGATGGACTTCCAT+TGG | 0.511374 | 8.1:-70400796 | None:intergenic |
| CTTCGGTCCGGTTATAGAAT+CGG | 0.515136 | 8.1:-70400815 | None:intergenic |
| CTTCCCAATGGAAGTCCATC+CGG | 0.518194 | 8.1:+70400792 | MS.gene019536:CDS |
| CGGCCGGATGGACTTCCATT+GGG | 0.521206 | 8.1:-70400795 | None:intergenic |
| CACTATTGATGGTTAAAGTA+GGG | 0.521314 | 8.1:-70400677 | None:intergenic |
| ACTTTGCTGATCTCTAACTC+TGG | 0.526992 | 8.1:+70399274 | MS.gene019536:CDS |
| ACCATCAATAGTGTTTGCCC+TGG | 0.544813 | 8.1:+70400687 | MS.gene019536:CDS |
| AAATGCAGGTTAACAATGCA+GGG | 0.549998 | 8.1:+70399215 | MS.gene019536:intron |
| AGATGGGATCAATTGAAGAA+AGG | 0.559849 | 8.1:+70397657 | None:intergenic |
| TAATCAAAAGGCAGAGACTT+CGG | 0.564844 | 8.1:-70400832 | None:intergenic |
| GTGAATCAGATAACTTTAGG+AGG | 0.565611 | 8.1:-70399586 | None:intergenic |
| CGGTTATAGAATCGGCCGGA+TGG | 0.573088 | 8.1:-70400807 | None:intergenic |
| GGTCTCTTAACTGCTGAAGA+AGG | 0.578507 | 8.1:+70400741 | MS.gene019536:CDS |
| GTTCATTGGAAAGCAAAGGC+TGG | 0.581607 | 8.1:+70400580 | MS.gene019536:CDS |
| ATATCTGTGATGACATAACC+AGG | 0.581810 | 8.1:-70400705 | None:intergenic |
| TACCTCTAACTTTCCCAGAG+TGG | 0.586644 | 8.1:-70399630 | None:intergenic |
| AAGCTAGCATTGCTTCCCAA+TGG | 0.591803 | 8.1:+70400780 | MS.gene019536:CDS |
| TGAATCAGATAACTTTAGGA+GGG | 0.593989 | 8.1:-70399585 | None:intergenic |
| GTGAATGTATCATCCACTCT+GGG | 0.594044 | 8.1:+70399617 | MS.gene019536:CDS |
| GGTCCGGTTATAGAATCGGC+CGG | 0.600077 | 8.1:-70400811 | None:intergenic |
| GAAGGTTCATTGGAAAGCAA+AGG | 0.604153 | 8.1:+70400576 | MS.gene019536:CDS |
| GAATCAGATAACTTTAGGAG+GGG | 0.624352 | 8.1:-70399584 | None:intergenic |
| AAAAGGCAGAGACTTCGGTC+CGG | 0.629789 | 8.1:-70400827 | None:intergenic |
| TGTGGCTAATGCTGCAAGTG+TGG | 0.661469 | 8.1:+70398452 | MS.gene019536:CDS |
| GTGGTGACTGGAGCAAACAA+AGG | 0.662474 | 8.1:+70398285 | MS.gene019536:CDS |
| AACAAAATCAGATAAACCAG+AGG | 0.663643 | 8.1:-70398412 | None:intergenic |
| AAAGGCTGGCCTAAAACTGG+TGG | 0.667637 | 8.1:+70400594 | MS.gene019536:CDS |
| ATTTGTTTGCAGGATTGCAG+TGG | 0.668507 | 8.1:+70398266 | MS.gene019536:intron |
| TATCTGTGATGACATAACCA+GGG | 0.733290 | 8.1:-70400704 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCATTTTTATTTTACTAT+TGG | - | chr8.1:70399020-70399039 | None:intergenic | 10.0% |
| !! | AAATGTTGTTATATAATTTC+TGG | - | chr8.1:70398006-70398025 | None:intergenic | 15.0% |
| !! | ATTAAAACTTTGGTAAATTT+AGG | - | chr8.1:70399872-70399891 | None:intergenic | 15.0% |
| !! | ATTGATATAATACATATGTA+AGG | + | chr8.1:70398630-70398649 | MS.gene019536:intron | 15.0% |
| !! | TTACATATGTATTATATCAA+TGG | - | chr8.1:70398631-70398650 | None:intergenic | 15.0% |
| !!! | ATAATTTCTGGTATAATATA+AGG | - | chr8.1:70397994-70398013 | None:intergenic | 15.0% |
| !!! | TGATTGAAGTTTTTAATTAT+TGG | + | chr8.1:70399330-70399349 | MS.gene019536:intron | 15.0% |
| !!! | TTAAGGTATTTTCAAATTTA+AGG | + | chr8.1:70400191-70400210 | MS.gene019536:intron | 15.0% |
| !!! | TTTGCTAAAATTTTTTATTC+TGG | + | chr8.1:70397706-70397725 | MS.gene019536:intron | 15.0% |
| !! | ATAGTATAGAAAAATAAGCT+TGG | + | chr8.1:70400386-70400405 | MS.gene019536:intron | 20.0% |
| !! | CAATGATCATATTAAAACTT+TGG | - | chr8.1:70399882-70399901 | None:intergenic | 20.0% |
| !! | CTTCATAGTGATATATTAAT+GGG | - | chr8.1:70399927-70399946 | None:intergenic | 20.0% |
| !! | GTATAATATAAGGACTAAAT+TGG | - | chr8.1:70397984-70398003 | None:intergenic | 20.0% |
| !! | TACAAACTGAATCATATTTA+AGG | - | chr8.1:70399417-70399436 | None:intergenic | 20.0% |
| !! | TCTCATAATGTTTATTGTTT+AGG | + | chr8.1:70399753-70399772 | MS.gene019536:intron | 20.0% |
| !! | TTATGGATTCATAAAACATA+AGG | - | chr8.1:70399668-70399687 | None:intergenic | 20.0% |
| !! | TTTAGCAAAATAAAGTTTGT+TGG | - | chr8.1:70397695-70397714 | None:intergenic | 20.0% |
| !!! | TATTCTTAATTTTTCTCTTG+AGG | + | chr8.1:70400423-70400442 | MS.gene019536:intron | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+CGG | + | chr8.1:70400043-70400062 | MS.gene019536:intron | 20.0% |
| !!! | TTATGTTTTATGAATCCATA+AGG | + | chr8.1:70399667-70399686 | MS.gene019536:intron | 20.0% |
| ! | AAACTAGTATGAAACCATTT+GGG | + | chr8.1:70398239-70398258 | MS.gene019536:intron | 25.0% |
| ! | AACTGAAGATGAAAAGAATA+AGG | + | chr8.1:70399478-70399497 | MS.gene019536:CDS | 25.0% |
| ! | AATATCAAGTTTGCCAAATT+GGG | - | chr8.1:70398502-70398521 | None:intergenic | 25.0% |
| ! | AGCATATTCATTTCAAATAC+AGG | + | chr8.1:70400452-70400471 | MS.gene019536:intron | 25.0% |
| ! | ATCTTCAGTCAAAGATTAAT+CGG | + | chr8.1:70398733-70398752 | MS.gene019536:intron | 25.0% |
| ! | ATTCATAAATAACTAAACCG+TGG | + | chr8.1:70398769-70398788 | MS.gene019536:intron | 25.0% |
| ! | CATTATCAACAACAAAAAAG+AGG | - | chr8.1:70398555-70398574 | None:intergenic | 25.0% |
| ! | GAAGAAAAATTGTTAAATGC+AGG | + | chr8.1:70399201-70399220 | MS.gene019536:intron | 25.0% |
| ! | GATATGTTTGGTATCATAAT+CGG | + | chr8.1:70397767-70397786 | MS.gene019536:intron | 25.0% |
| ! | GCATATTCATTTCAAATACA+GGG | + | chr8.1:70400453-70400472 | MS.gene019536:intron | 25.0% |
| ! | GCTTCATAGTGATATATTAA+TGG | - | chr8.1:70399928-70399947 | None:intergenic | 25.0% |
| ! | TAAACTAGTATGAAACCATT+TGG | + | chr8.1:70398238-70398257 | MS.gene019536:intron | 25.0% |
| ! | TAATATATCACTATGAAGCA+CGG | + | chr8.1:70399929-70399948 | MS.gene019536:intron | 25.0% |
| ! | TGCTTGCAAATAAACTATTA+TGG | + | chr8.1:70399533-70399552 | MS.gene019536:CDS | 25.0% |
| ! | TGTATCTGATATAAGATTGA+TGG | + | chr8.1:70398670-70398689 | MS.gene019536:intron | 25.0% |
| ! | TTCAGTGTAATTATATGTGT+CGG | - | chr8.1:70400018-70400037 | None:intergenic | 25.0% |
| ! | TTCTGGTAACATACAAAAAT+TGG | + | chr8.1:70398520-70398539 | MS.gene019536:intron | 25.0% |
| ! | TTTCTAAACGAAACTTATCA+GGG | - | chr8.1:70399385-70399404 | None:intergenic | 25.0% |
| ! | TTTCTACAAGATTACAAAGA+AGG | + | chr8.1:70400558-70400577 | MS.gene019536:CDS | 25.0% |
| ! | TTTCTTCTGTAAAATTACAG+TGG | - | chr8.1:70397813-70397832 | None:intergenic | 25.0% |
| !! | AATTTTAAATGCATCACGAT+GGG | - | chr8.1:70398831-70398850 | None:intergenic | 25.0% |
| !! | TAATTTTAAATGCATCACGA+TGG | - | chr8.1:70398832-70398851 | None:intergenic | 25.0% |
| !! | TTTTCTAAACGAAACTTATC+AGG | - | chr8.1:70399386-70399405 | None:intergenic | 25.0% |
| !!! | AAAATTTTTTATTCTGGTCG+TGG | + | chr8.1:70397712-70397731 | MS.gene019536:intron | 25.0% |
| !!! | AATTTCCTTAATAGCTTTGA+AGG | + | chr8.1:70399130-70399149 | MS.gene019536:intron | 25.0% |
| !!! | ATAAAGTTTGTTGGTTTAGT+TGG | - | chr8.1:70397686-70397705 | None:intergenic | 25.0% |
| !!! | ATTTCCTTAATAGCTTTGAA+GGG | + | chr8.1:70399131-70399150 | MS.gene019536:intron | 25.0% |
| !!! | TAGTTTTGTCTAAAACTGTA+GGG | + | chr8.1:70399831-70399850 | MS.gene019536:intron | 25.0% |
| !!! | TTTTTAATTATTGGCTGCTA+TGG | + | chr8.1:70399339-70399358 | MS.gene019536:intron | 25.0% |
| AACAAAATCAGATAAACCAG+AGG | - | chr8.1:70398415-70398434 | None:intergenic | 30.0% | |
| AATGCCAACAAGTAAAAACA+AGG | + | chr8.1:70400315-70400334 | MS.gene019536:intron | 30.0% | |
| ACAGATATTACTGCTAATAC+TGG | + | chr8.1:70400720-70400739 | MS.gene019536:CDS | 30.0% | |
| ACATACTCAAATAAACACAC+GGG | - | chr8.1:70398984-70399003 | None:intergenic | 30.0% | |
| AGATTACAAAGAAGGTTCAT+TGG | + | chr8.1:70400566-70400585 | MS.gene019536:CDS | 30.0% | |
| ATTCATGAATTGTTCTTTGC+AGG | + | chr8.1:70399451-70399470 | MS.gene019536:intron | 30.0% | |
| ATTTGGCAAACTTGATATTC+TGG | + | chr8.1:70398503-70398522 | MS.gene019536:CDS | 30.0% | |
| CAAACTTTACTGGATATGTT+TGG | + | chr8.1:70397755-70397774 | MS.gene019536:intron | 30.0% | |
| CACATACTCAAATAAACACA+CGG | - | chr8.1:70398985-70399004 | None:intergenic | 30.0% | |
| CCAAAAGAACTAATGCATTA+AGG | + | chr8.1:70400174-70400193 | MS.gene019536:intron | 30.0% | |
| CTTTCTCATGAAAAACCTTA+TGG | - | chr8.1:70399685-70399704 | None:intergenic | 30.0% | |
| GAATATCAAGTTTGCCAAAT+TGG | - | chr8.1:70398503-70398522 | None:intergenic | 30.0% | |
| GATATAGTACATATGAAGCA+CGG | - | chr8.1:70400121-70400140 | None:intergenic | 30.0% | |
| GATGATACATTCACAATTCT+TGG | - | chr8.1:70399611-70399630 | None:intergenic | 30.0% | |
| GTGTTTATTTGAGTATGTGT+TGG | + | chr8.1:70398986-70399005 | MS.gene019536:intron | 30.0% | |
| GTTTAAGAACCATATAGAGA+AGG | + | chr8.1:70398174-70398193 | MS.gene019536:intron | 30.0% | |
| TAATATTGTAGAGAGATGCA+TGG | + | chr8.1:70397871-70397890 | MS.gene019536:intron | 30.0% | |
| TAGTGATTCACTTTCAATCA+AGG | - | chr8.1:70399813-70399832 | None:intergenic | 30.0% | |
| TCAACAACAAAAAAGAGGAA+AGG | - | chr8.1:70398550-70398569 | None:intergenic | 30.0% | |
| TCCTGAACATCTTAATAACA+CGG | + | chr8.1:70398099-70398118 | MS.gene019536:intron | 30.0% | |
| TTGGTGAATCAGATAACTTT+AGG | - | chr8.1:70399592-70399611 | None:intergenic | 30.0% | |
| ! | ACACTATTGATGGTTAAAGT+AGG | - | chr8.1:70400681-70400700 | None:intergenic | 30.0% |
| ! | CACTATTGATGGTTAAAGTA+GGG | - | chr8.1:70400680-70400699 | None:intergenic | 30.0% |
| ! | TGAATCAGATAACTTTAGGA+GGG | - | chr8.1:70399588-70399607 | None:intergenic | 30.0% |
| ! | TGTCTTTTATCAAGTAGATG+TGG | + | chr8.1:70398434-70398453 | MS.gene019536:CDS | 30.0% |
| !! | AGCTTTAAAACACTACTGTT+TGG | + | chr8.1:70399703-70399722 | MS.gene019536:intron | 30.0% |
| !! | AGTTTTGTCTAAAACTGTAG+GGG | + | chr8.1:70399832-70399851 | MS.gene019536:intron | 30.0% |
| !! | ATGCATTAGTTCTTTTGGAT+TGG | - | chr8.1:70400172-70400191 | None:intergenic | 30.0% |
| !! | CCTTAATGCATTAGTTCTTT+TGG | - | chr8.1:70400177-70400196 | None:intergenic | 30.0% |
| !! | TGGTGTGAGGTTATTTTATA+TGG | + | chr8.1:70398919-70398938 | MS.gene019536:intron | 30.0% |
| !! | TTATTTTACTATTGGCCTAG+TGG | - | chr8.1:70399012-70399031 | None:intergenic | 30.0% |
| !! | TTTTTACTTGTTGGCATTGT+AGG | - | chr8.1:70400313-70400332 | None:intergenic | 30.0% |
| !!! | CTAGTTTTGTCTAAAACTGT+AGG | + | chr8.1:70399830-70399849 | MS.gene019536:intron | 30.0% |
| !!! | TTGTCCTTGTTTTTACTTGT+TGG | - | chr8.1:70400322-70400341 | None:intergenic | 30.0% |
| AAAAAGAGGTCTTCATGCTT+TGG | + | chr8.1:70398377-70398396 | MS.gene019536:CDS | 35.0% | |
| AAATGCAGGTTAACAATGCA+GGG | + | chr8.1:70399215-70399234 | MS.gene019536:intron | 35.0% | |
| ACAACAAAAAAGAGGAAAGG+AGG | - | chr8.1:70398547-70398566 | None:intergenic | 35.0% | |
| ACTGCAAGAGATGAAAAAAG+AGG | + | chr8.1:70398363-70398382 | MS.gene019536:CDS | 35.0% | |
| ATAGAGAAGGTGACATTTGA+AGG | + | chr8.1:70398187-70398206 | MS.gene019536:intron | 35.0% | |
| ATATCTGTGATGACATAACC+AGG | - | chr8.1:70400708-70400727 | None:intergenic | 35.0% | |
| CAAATGTCACCTTCTCTATA+TGG | - | chr8.1:70398186-70398205 | None:intergenic | 35.0% | |
| CATATCCAGTAAAGTTTGCA+AGG | - | chr8.1:70397753-70397772 | None:intergenic | 35.0% | |
| GATTCCCTTCAAAGCTATTA+AGG | - | chr8.1:70399138-70399157 | None:intergenic | 35.0% | |
| GATTTCGTCAAATCCCAATT+TGG | + | chr8.1:70398486-70398505 | MS.gene019536:CDS | 35.0% | |
| GCAAACAAATTCAACCCAAA+TGG | - | chr8.1:70398256-70398275 | None:intergenic | 35.0% | |
| GTCAAAGATTAATCGGCTAA+TGG | + | chr8.1:70398740-70398759 | MS.gene019536:intron | 35.0% | |
| GTGAATCAGATAACTTTAGG+AGG | - | chr8.1:70399589-70399608 | None:intergenic | 35.0% | |
| TAAACGAAACTTATCAGGGA+CGG | - | chr8.1:70399381-70399400 | None:intergenic | 35.0% | |
| TAAATGCAGGTTAACAATGC+AGG | + | chr8.1:70399214-70399233 | MS.gene019536:intron | 35.0% | |
| TACAGGGCATACAAAATGAA+TGG | + | chr8.1:70400469-70400488 | MS.gene019536:intron | 35.0% | |
| TATCTGTGATGACATAACCA+GGG | - | chr8.1:70400707-70400726 | None:intergenic | 35.0% | |
| TCTCAAATTATTAGCGGTGT+CGG | + | chr8.1:70400049-70400068 | MS.gene019536:intron | 35.0% | |
| TCTTTGACTGAAGATCTGAA+CGG | - | chr8.1:70398728-70398747 | None:intergenic | 35.0% | |
| ! | GAATCAGATAACTTTAGGAG+GGG | - | chr8.1:70399587-70399606 | None:intergenic | 35.0% |
| ! | GAATCTCATGCTTCACATTT+TGG | + | chr8.1:70399153-70399172 | MS.gene019536:intron | 35.0% |
| ! | GGTTGATGTGATTTCAATTG+TGG | + | chr8.1:70397902-70397921 | MS.gene019536:intron | 35.0% |
| ! | TCCGTGTTATTAAGATGTTC+AGG | - | chr8.1:70398103-70398122 | None:intergenic | 35.0% |
| !! | GCTTCACATTTTGGTACATA+TGG | + | chr8.1:70399162-70399181 | MS.gene019536:intron | 35.0% |
| !! | TTTGGGTTGAATTTGTTTGC+AGG | + | chr8.1:70398256-70398275 | MS.gene019536:intron | 35.0% |
| ACTCAAATAAACACACGGGA+AGG | - | chr8.1:70398980-70398999 | None:intergenic | 40.0% | |
| ACTGGAGCAAACAAAGGAAT+TGG | + | chr8.1:70398291-70398310 | MS.gene019536:CDS | 40.0% | |
| ACTTTGCTGATCTCTAACTC+TGG | + | chr8.1:70399274-70399293 | MS.gene019536:CDS | 40.0% | |
| ATTCCATCGTGTCCATTTAG+AGG | - | chr8.1:70398801-70398820 | None:intergenic | 40.0% | |
| ATTTGTTTGCAGGATTGCAG+TGG | + | chr8.1:70398266-70398285 | MS.gene019536:intron | 40.0% | |
| GAAATCACATCAACCACATC+TGG | - | chr8.1:70397897-70397916 | None:intergenic | 40.0% | |
| GAAGGTTCATTGGAAAGCAA+AGG | + | chr8.1:70400576-70400595 | MS.gene019536:CDS | 40.0% | |
| GATTGCCTTGCAAACTTTAC+TGG | + | chr8.1:70397745-70397764 | MS.gene019536:intron | 40.0% | |
| GTGAATGTATCATCCACTCT+GGG | + | chr8.1:70399617-70399636 | MS.gene019536:CDS | 40.0% | |
| GTTAACAATGCAGGGATTAG+TGG | + | chr8.1:70399223-70399242 | MS.gene019536:CDS | 40.0% | |
| TAGTTGCACGATAGTCTAGA+AGG | + | chr8.1:70398591-70398610 | MS.gene019536:intron | 40.0% | |
| TGTGAATGTATCATCCACTC+TGG | + | chr8.1:70399616-70399635 | MS.gene019536:CDS | 40.0% | |
| TTAAATGCATCACGATGGGT+CGG | - | chr8.1:70398827-70398846 | None:intergenic | 40.0% | |
| TTTCAATTGTGGCTGCACTA+CGG | + | chr8.1:70397913-70397932 | MS.gene019536:intron | 40.0% | |
| TTTGTGTGTCCTCGTTGTTA+CGG | + | chr8.1:70398885-70398904 | MS.gene019536:intron | 40.0% | |
| ! | ACATAAGCACCACCAGTTTT+AGG | - | chr8.1:70400606-70400625 | None:intergenic | 40.0% |
| ! | CGTTTTGCAATCGATATGTC+AGG | + | chr8.1:70399784-70399803 | MS.gene019536:intron | 40.0% |
| !! | CATCGACTTTCTCTTCAGTT+AGG | - | chr8.1:70400524-70400543 | None:intergenic | 40.0% |
| AACCTCACACCAAAACCACT+AGG | - | chr8.1:70398911-70398930 | None:intergenic | 45.0% | |
| AAGCTAGCATTGCTTCCCAA+TGG | + | chr8.1:70400780-70400799 | MS.gene019536:CDS | 45.0% | |
| ACCAGGGCAAACACTATTGA+TGG | - | chr8.1:70400691-70400710 | None:intergenic | 45.0% | |
| ACCATCAATAGTGTTTGCCC+TGG | + | chr8.1:70400687-70400706 | MS.gene019536:CDS | 45.0% | |
| ATGAAGCACGGATACAGACA+CGG | - | chr8.1:70400109-70400128 | None:intergenic | 45.0% | |
| CAAATAAACACACGGGAAGG+TGG | - | chr8.1:70398977-70398996 | None:intergenic | 45.0% | |
| CTTCGGTCCGGTTATAGAAT+CGG | - | chr8.1:70400818-70400837 | None:intergenic | 45.0% | |
| GAAGATCTGAACGGCAAAGA+GGG | - | chr8.1:70398719-70398738 | None:intergenic | 45.0% | |
| GCGTGCTCATCTTACAACTT+TGG | + | chr8.1:70399057-70399076 | MS.gene019536:intron | 45.0% | |
| GGTCTCTTAACTGCTGAAGA+AGG | + | chr8.1:70400741-70400760 | MS.gene019536:CDS | 45.0% | |
| GTTCATTGGAAAGCAAAGGC+TGG | + | chr8.1:70400580-70400599 | MS.gene019536:CDS | 45.0% | |
| TAAATGCATCACGATGGGTC+GGG | - | chr8.1:70398826-70398845 | None:intergenic | 45.0% | |
| TACCTCTAACTTTCCCAGAG+TGG | - | chr8.1:70399633-70399652 | None:intergenic | 45.0% | |
| TGAAGATCTGAACGGCAAAG+AGG | - | chr8.1:70398720-70398739 | None:intergenic | 45.0% | |
| TGGAATCGTGAGTTCAAACC+CGG | + | chr8.1:70398939-70398958 | MS.gene019536:intron | 45.0% | |
| ! | ATCCACTCTGGGAAAGTTAG+AGG | + | chr8.1:70399628-70399647 | MS.gene019536:CDS | 45.0% |
| ! | GTTAAGCAGTTAGCTTCAGC+TGG | + | chr8.1:70398324-70398343 | MS.gene019536:CDS | 45.0% |
| ! | TTGAGTATGTGTTGGCCACT+AGG | + | chr8.1:70398994-70399013 | MS.gene019536:intron | 45.0% |
| ! | TTGTTACGGCCTAGTGGTTT+TGG | + | chr8.1:70398899-70398918 | MS.gene019536:intron | 45.0% |
| AAAAGGCAGAGACTTCGGTC+CGG | - | chr8.1:70400830-70400849 | None:intergenic | 50.0% | |
| AAGGTGGAAATGTGGTGACC+CGG | - | chr8.1:70398961-70398980 | None:intergenic | 50.0% | |
| ACACGACACATGTCCGACTT+CGG | - | chr8.1:70399978-70399997 | None:intergenic | 50.0% | |
| ACACGGACACGGATAAGACA+CGG | - | chr8.1:70400092-70400111 | None:intergenic | 50.0% | |
| CGACCTCTAAATGGACACGA+TGG | + | chr8.1:70398795-70398814 | MS.gene019536:intron | 50.0% | |
| CTTCCCAATGGAAGTCCATC+CGG | + | chr8.1:70400792-70400811 | MS.gene019536:CDS | 50.0% | |
| GATTAGGCATGTCCCGAAGT+CGG | + | chr8.1:70399962-70399981 | MS.gene019536:intron | 50.0% | |
| GGAATCGTGAGTTCAAACCC+GGG | + | chr8.1:70398940-70398959 | MS.gene019536:intron | 50.0% | |
| GTGGTGACTGGAGCAAACAA+AGG | + | chr8.1:70398285-70398304 | MS.gene019536:CDS | 50.0% | |
| TATGAAGCACGGACACTCCT+CGG | + | chr8.1:70399940-70399959 | MS.gene019536:intron | 50.0% | |
| TGTGGCTAATGCTGCAAGTG+TGG | + | chr8.1:70398452-70398471 | MS.gene019536:CDS | 50.0% | |
| TTGGAGACACTCAAAGCCTC+TGG | + | chr8.1:70398396-70398415 | MS.gene019536:CDS | 50.0% | |
| ! | CATCCGGCCGATTCTATAAC+CGG | + | chr8.1:70400808-70400827 | MS.gene019536:CDS | 50.0% |
| !! | AAAGGCTGGCCTAAAACTGG+TGG | + | chr8.1:70400594-70400613 | MS.gene019536:CDS | 50.0% |
| !! | AGCAAAGGCTGGCCTAAAAC+TGG | + | chr8.1:70400591-70400610 | MS.gene019536:CDS | 50.0% |
| ACCACTAGGCCGTAACAACG+AGG | - | chr8.1:70398897-70398916 | None:intergenic | 55.0% | |
| AGGTGGAAATGTGGTGACCC+GGG | - | chr8.1:70398960-70398979 | None:intergenic | 55.0% | |
| CACACGGGAAGGTGGAAATG+TGG | - | chr8.1:70398969-70398988 | None:intergenic | 55.0% | |
| CACGACACATGTCCGACTTC+GGG | - | chr8.1:70399977-70399996 | None:intergenic | 55.0% | |
| CACGGATACAGACACGGACA+CGG | - | chr8.1:70400103-70400122 | None:intergenic | 55.0% | |
| CCATTTAGAGGTCGCGACCA+CGG | - | chr8.1:70398789-70398808 | None:intergenic | 55.0% | |
| CGGTTATAGAATCGGCCGGA+TGG | - | chr8.1:70400810-70400829 | None:intergenic | 55.0% | |
| GAGAGATGCATGGCCAGATG+TGG | + | chr8.1:70397881-70397900 | MS.gene019536:intron | 55.0% | |
| GGTCCGGTTATAGAATCGGC+CGG | - | chr8.1:70400814-70400833 | None:intergenic | 55.0% | |
| TCCTCGTTGTTACGGCCTAG+TGG | + | chr8.1:70398893-70398912 | MS.gene019536:intron | 55.0% | |
| TGCAGGATTGCAGTGGTGAC+TGG | + | chr8.1:70398273-70398292 | MS.gene019536:intron | 55.0% | |
| TTCGGGACATGCCTAATCCG+AGG | - | chr8.1:70399960-70399979 | None:intergenic | 55.0% | |
| !! | TGTCGGTGTCGTGTCAGTGT+CGG | - | chr8.1:70400001-70400020 | None:intergenic | 55.0% |
| !!! | GGCCTAGTGGTTTTGGTGTG+AGG | + | chr8.1:70398906-70398925 | MS.gene019536:intron | 55.0% |
| CCGTGGTCGCGACCTCTAAA+TGG | + | chr8.1:70398786-70398805 | MS.gene019536:intron | 60.0% | |
| GCACGGACACTCCTCGGATT+AGG | + | chr8.1:70399946-70399965 | MS.gene019536:intron | 60.0% | |
| ! | CGGCCGGATGGACTTCCATT+GGG | - | chr8.1:70400798-70400817 | None:intergenic | 60.0% |
| ! | TCGGCCGGATGGACTTCCAT+TGG | - | chr8.1:70400799-70400818 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 70397659 | 70400851 | 70397659 | ID=MS.gene019536 |
| chr8.1 | mRNA | 70397659 | 70400851 | 70397659 | ID=MS.gene019536.t1;Parent=MS.gene019536 |
| chr8.1 | exon | 70397659 | 70397678 | 70397659 | ID=MS.gene019536.t1.exon1;Parent=MS.gene019536.t1 |
| chr8.1 | CDS | 70397659 | 70397678 | 70397659 | ID=cds.MS.gene019536.t1;Parent=MS.gene019536.t1 |
| chr8.1 | exon | 70398278 | 70398524 | 70398278 | ID=MS.gene019536.t1.exon2;Parent=MS.gene019536.t1 |
| chr8.1 | CDS | 70398278 | 70398524 | 70398278 | ID=cds.MS.gene019536.t1;Parent=MS.gene019536.t1 |
| chr8.1 | exon | 70399223 | 70399297 | 70399223 | ID=MS.gene019536.t1.exon3;Parent=MS.gene019536.t1 |
| chr8.1 | CDS | 70399223 | 70399297 | 70399223 | ID=cds.MS.gene019536.t1;Parent=MS.gene019536.t1 |
| chr8.1 | exon | 70399473 | 70399649 | 70399473 | ID=MS.gene019536.t1.exon4;Parent=MS.gene019536.t1 |
| chr8.1 | CDS | 70399473 | 70399649 | 70399473 | ID=cds.MS.gene019536.t1;Parent=MS.gene019536.t1 |
| chr8.1 | exon | 70400474 | 70400851 | 70400474 | ID=MS.gene019536.t1.exon5;Parent=MS.gene019536.t1 |
| chr8.1 | CDS | 70400474 | 70400851 | 70400474 | ID=cds.MS.gene019536.t1;Parent=MS.gene019536.t1 |
| Gene Sequence |
| Protein sequence |
