Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57558.t1 | RHN39987.1 | 95.3 | 299 | 14 | 0 | 1 | 299 | 1 | 299 | 5.70E-157 | 563.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57558.t1 | Q9M2E2 | 58.3 | 302 | 117 | 5 | 1 | 299 | 1 | 296 | 4.2e-92 | 339.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57558.t1 | A0A396GMQ2 | 95.3 | 299 | 14 | 0 | 1 | 299 | 1 | 299 | 4.1e-157 | 563.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57558.t1 | MTR_8g032010 | 84.950 | 299 | 44 | 1 | 1 | 299 | 1 | 298 | 0.0 | 524 |
| MS.gene57558.t1 | MTR_8g031990 | 84.615 | 299 | 45 | 1 | 1 | 299 | 1 | 298 | 0.0 | 518 |
| MS.gene57558.t1 | MTR_8g032020 | 83.165 | 297 | 50 | 0 | 3 | 299 | 4 | 300 | 0.0 | 509 |
| MS.gene57558.t1 | MTR_8g032000 | 82.274 | 299 | 52 | 1 | 1 | 299 | 1 | 298 | 0.0 | 504 |
| MS.gene57558.t1 | MTR_8g031980 | 69.900 | 299 | 89 | 1 | 1 | 299 | 1 | 298 | 6.17e-154 | 432 |
| MS.gene57558.t1 | MTR_8g031960 | 67.797 | 295 | 94 | 1 | 4 | 298 | 5 | 298 | 4.76e-150 | 422 |
| MS.gene57558.t1 | MTR_8g031940 | 66.333 | 300 | 99 | 2 | 1 | 299 | 1 | 299 | 1.17e-141 | 401 |
| MS.gene57558.t1 | MTR_7g076660 | 58.863 | 299 | 110 | 2 | 1 | 299 | 1 | 286 | 3.41e-128 | 367 |
| MS.gene57558.t1 | MTR_7g076660 | 58.844 | 294 | 108 | 2 | 6 | 299 | 7 | 287 | 6.34e-127 | 363 |
| MS.gene57558.t1 | MTR_7g076655 | 58.528 | 299 | 111 | 2 | 1 | 299 | 1 | 286 | 7.79e-127 | 363 |
| MS.gene57558.t1 | MTR_8g031910 | 59.322 | 295 | 106 | 3 | 6 | 299 | 6 | 287 | 3.27e-121 | 349 |
| MS.gene57558.t1 | MTR_7g076665 | 58.163 | 294 | 117 | 3 | 7 | 299 | 7 | 295 | 1.40e-120 | 347 |
| MS.gene57558.t1 | MTR_8g032030 | 97.126 | 174 | 5 | 0 | 1 | 174 | 1 | 174 | 1.19e-119 | 343 |
| MS.gene57558.t1 | MTR_8g031900 | 55.184 | 299 | 128 | 2 | 1 | 299 | 1 | 293 | 1.42e-119 | 345 |
| MS.gene57558.t1 | MTR_8g031630 | 57.807 | 301 | 121 | 4 | 1 | 299 | 1 | 297 | 1.89e-116 | 337 |
| MS.gene57558.t1 | MTR_7g076660 | 57.664 | 274 | 103 | 2 | 26 | 299 | 2 | 262 | 4.11e-115 | 332 |
| MS.gene57558.t1 | MTR_8g031600 | 58.362 | 293 | 117 | 2 | 1 | 291 | 1 | 290 | 6.22e-115 | 333 |
| MS.gene57558.t1 | MTR_8g031610 | 56.655 | 293 | 122 | 3 | 8 | 299 | 6 | 294 | 1.41e-111 | 325 |
| MS.gene57558.t1 | MTR_8g031650 | 57.534 | 292 | 118 | 4 | 10 | 299 | 104 | 391 | 3.93e-110 | 325 |
| MS.gene57558.t1 | MTR_8g031650 | 60.784 | 102 | 38 | 2 | 171 | 270 | 2 | 103 | 4.28e-37 | 136 |
| MS.gene57558.t1 | MTR_8g031650 | 57.534 | 292 | 118 | 4 | 10 | 299 | 270 | 557 | 2.55e-108 | 325 |
| MS.gene57558.t1 | MTR_8g031650 | 58.824 | 272 | 107 | 3 | 1 | 270 | 1 | 269 | 2.17e-105 | 318 |
| MS.gene57558.t1 | MTR_5g062280 | 52.843 | 299 | 137 | 3 | 1 | 299 | 1 | 295 | 1.16e-104 | 307 |
| MS.gene57558.t1 | MTR_3g079320 | 47.826 | 299 | 149 | 4 | 6 | 299 | 10 | 306 | 7.84e-91 | 272 |
| MS.gene57558.t1 | MTR_8g031850 | 46.488 | 299 | 116 | 3 | 1 | 299 | 1 | 255 | 2.60e-90 | 269 |
| MS.gene57558.t1 | MTR_7g106800 | 46.844 | 301 | 99 | 3 | 4 | 299 | 6 | 250 | 1.00e-82 | 250 |
| MS.gene57558.t1 | MTR_5g083430 | 55.233 | 172 | 77 | 0 | 128 | 299 | 13 | 184 | 1.99e-69 | 213 |
| MS.gene57558.t1 | MTR_3g098470 | 39.672 | 305 | 146 | 5 | 6 | 299 | 34 | 311 | 6.06e-69 | 217 |
| MS.gene57558.t1 | MTR_1g031180 | 38.361 | 305 | 150 | 7 | 6 | 299 | 39 | 316 | 2.37e-60 | 195 |
| MS.gene57558.t1 | MTR_8g096060 | 36.393 | 305 | 153 | 7 | 6 | 299 | 36 | 310 | 9.15e-58 | 188 |
| MS.gene57558.t1 | MTR_4g087460 | 36.964 | 303 | 147 | 10 | 6 | 291 | 21 | 296 | 1.29e-52 | 175 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57558.t1 | AT3G61220 | 58.278 | 302 | 117 | 5 | 1 | 299 | 1 | 296 | 1.29e-122 | 353 |
| MS.gene57558.t1 | AT3G61220 | 58.446 | 296 | 114 | 5 | 7 | 299 | 14 | 303 | 1.25e-120 | 348 |
| MS.gene57558.t1 | AT3G61220 | 58.446 | 296 | 114 | 5 | 7 | 299 | 38 | 327 | 4.51e-120 | 347 |
| MS.gene57558.t1 | AT1G01800 | 55.932 | 295 | 124 | 4 | 7 | 299 | 5 | 295 | 2.38e-115 | 334 |
| MS.gene57558.t1 | AT2G24190 | 54.967 | 302 | 127 | 5 | 1 | 299 | 1 | 296 | 6.89e-113 | 328 |
| MS.gene57558.t1 | AT2G24190 | 55.405 | 296 | 123 | 5 | 7 | 299 | 12 | 301 | 1.66e-111 | 325 |
| MS.gene57558.t1 | AT1G01800 | 52.857 | 210 | 95 | 2 | 90 | 299 | 55 | 260 | 6.09e-77 | 235 |
| MS.gene57558.t1 | AT5G51030 | 37.255 | 306 | 154 | 7 | 5 | 299 | 36 | 314 | 6.75e-63 | 201 |
| MS.gene57558.t1 | AT3G59710 | 36.071 | 280 | 149 | 5 | 6 | 282 | 18 | 270 | 1.54e-54 | 179 |
| MS.gene57558.t1 | AT3G59710 | 36.071 | 280 | 149 | 5 | 6 | 282 | 28 | 280 | 2.74e-54 | 179 |
| MS.gene57558.t1 | AT3G59710 | 36.071 | 280 | 149 | 5 | 6 | 282 | 47 | 299 | 6.30e-54 | 178 |
| MS.gene57558.t1 | AT5G61830 | 38.235 | 306 | 152 | 7 | 6 | 299 | 36 | 316 | 1.10e-53 | 177 |
| MS.gene57558.t1 | AT5G61830 | 38.235 | 306 | 152 | 7 | 6 | 299 | 36 | 316 | 1.10e-53 | 177 |
Find 64 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCATTCAAATAAATTATTA+TGG | 0.154385 | 8.3:+62601024 | MS.gene57558:CDS |
| ATTTGGCAAACTTGATATTC+TGG | 0.218733 | 8.3:+62599698 | MS.gene57558:CDS |
| CATCTATTCTCTCTTCTGTT+AGG | 0.258784 | 8.3:-62601692 | None:intergenic |
| AGGCCAACCTTTCCTTTCTA+AGG | 0.298959 | 8.3:-62601754 | None:intergenic |
| GAGAATAGATGAAGTAATAA+AGG | 0.307579 | 8.3:+62601704 | MS.gene57558:CDS |
| CTCAGGTATGCAGTGGTGAC+TGG | 0.354241 | 8.3:+62599468 | MS.gene57558:intron |
| AAAATGAAATAACTTTATTC+TGG | 0.354984 | 8.3:-62601998 | None:intergenic |
| ACCTGTATTAGCAGTTATAT+CGG | 0.361405 | 8.3:-62601892 | None:intergenic |
| GCATTCAAATAAATTATTAT+GGG | 0.371941 | 8.3:+62601025 | MS.gene57558:CDS |
| ATCAGTATGTATCAAATGAA+TGG | 0.381467 | 8.3:+62601640 | MS.gene57558:intron |
| GAAAAGAGGTCTTCATGCTT+TGG | 0.381657 | 8.3:+62599572 | MS.gene57558:CDS |
| ATAGTTGAAGGAGGGGAAGA+AGG | 0.389200 | 8.3:-62601068 | None:intergenic |
| GGAAGTAGTGCTAACCTAAC+AGG | 0.389438 | 8.3:-62601945 | None:intergenic |
| ACTGGAGCAAACAAAGGAAT+TGG | 0.400758 | 8.3:+62599486 | MS.gene57558:CDS |
| CTTCCCAATGGTAGTCCATC+TGG | 0.424788 | 8.3:+62601963 | MS.gene57558:CDS |
| AGAAGCTTTAGCAACAATAT+AGG | 0.431311 | 8.3:-62601790 | None:intergenic |
| TGCTGCAAGTGTAGCTTCTC+TGG | 0.448719 | 8.3:+62599656 | MS.gene57558:CDS |
| AAGGTGCTGCTCATCCTGTT+AGG | 0.448829 | 8.3:+62601931 | MS.gene57558:CDS |
| TTGAAGAAGGGTCCTTAGAA+AGG | 0.448969 | 8.3:+62601742 | MS.gene57558:CDS |
| ACTAAACTAATCATGACAAA+GGG | 0.449399 | 8.3:+62600549 | MS.gene57558:CDS |
| ACACAATTGATGCAGAAGTT+AGG | 0.460671 | 8.3:-62601849 | None:intergenic |
| TTGGAAACACTCAAAACCTC+TGG | 0.460844 | 8.3:+62599591 | MS.gene57558:CDS |
| GTTAAGCAGTTAGCTTCAGC+TGG | 0.466868 | 8.3:+62599519 | MS.gene57558:CDS |
| TGCATCAATTGTGTGTGCCC+TGG | 0.470212 | 8.3:+62601858 | MS.gene57558:CDS |
| TCAGTATGTATCAAATGAAT+GGG | 0.473036 | 8.3:+62601641 | MS.gene57558:intron |
| ATTGCATAGGTTAACAATGC+AGG | 0.479316 | 8.3:+62600489 | MS.gene57558:intron |
| AACATCACTGAAGACAACTT+TGG | 0.482686 | 8.3:-62601664 | None:intergenic |
| GATGATACATTGACTACTCT+TGG | 0.488410 | 8.3:-62601099 | None:intergenic |
| GTTAACAATGCAGGGATTGG+TGG | 0.493765 | 8.3:+62600498 | MS.gene57558:CDS |
| TAGGTTAACAATGCAGGGAT+TGG | 0.493825 | 8.3:+62600495 | MS.gene57558:intron |
| GAGGCCAGATGGACTACCAT+TGG | 0.500283 | 8.3:-62601967 | None:intergenic |
| TTGGTGAATCAGATAGTTGA+AGG | 0.507829 | 8.3:-62601080 | None:intergenic |
| ACCGATATAACTGCTAATAC+AGG | 0.514553 | 8.3:+62601891 | MS.gene57558:CDS |
| TAGAAAGGAAAGGTTGGCCT+AGG | 0.524315 | 8.3:+62601757 | MS.gene57558:CDS |
| AGGCCAGATGGACTACCATT+GGG | 0.540042 | 8.3:-62601966 | None:intergenic |
| TTGCATAGGTTAACAATGCA+GGG | 0.542302 | 8.3:+62600490 | MS.gene57558:intron |
| CACTAAACTAATCATGACAA+AGG | 0.543900 | 8.3:+62600548 | MS.gene57558:CDS |
| CTTTGCAGTAATTCTTGTGT+AGG | 0.546772 | 8.3:-62601820 | None:intergenic |
| CATTCAAATAAATTATTATG+GGG | 0.549783 | 8.3:+62601026 | MS.gene57558:CDS |
| TGGCTATAGAAGAGGCCAGA+TGG | 0.551063 | 8.3:-62601978 | None:intergenic |
| GGTATCTTCAAAGTTGAAGA+AGG | 0.552996 | 8.3:+62601912 | MS.gene57558:CDS |
| GAATCAGATAGTTGAAGGAG+GGG | 0.553764 | 8.3:-62601075 | None:intergenic |
| ACTGCAAGAAATGAGAAAAG+AGG | 0.559420 | 8.3:+62599558 | MS.gene57558:CDS |
| CTTTATTCTGGCTATAGAAG+AGG | 0.560530 | 8.3:-62601986 | None:intergenic |
| GTCAATGTATCATCGAGAGC+AGG | 0.564594 | 8.3:+62601108 | MS.gene57558:CDS |
| TGAATCAGATAGTTGAAGGA+GGG | 0.569558 | 8.3:-62601076 | None:intergenic |
| AGATGGAAGAATATACAGAA+AGG | 0.592841 | 8.3:+62599343 | None:intergenic |
| GGTCCTTAGAAAGGAAAGGT+TGG | 0.595012 | 8.3:+62601751 | MS.gene57558:CDS |
| ATCTGATGAAGAATCGAGAA+GGG | 0.610949 | 8.3:+62600969 | MS.gene57558:CDS |
| ATATAGGCAGCTAAATACCT+AGG | 0.613579 | 8.3:-62601774 | None:intergenic |
| CTAAACTAATCATGACAAAG+GGG | 0.614957 | 8.3:+62600550 | MS.gene57558:CDS |
| TCTCTTCCTCAGGTATGCAG+TGG | 0.615906 | 8.3:+62599461 | MS.gene57558:intron |
| TATCTGATGAAGAATCGAGA+AGG | 0.629789 | 8.3:+62600968 | MS.gene57558:CDS |
| AGGTTAGCACTACTTCCCAA+TGG | 0.631533 | 8.3:+62601951 | MS.gene57558:CDS |
| GAAGGGTCCTTAGAAAGGAA+AGG | 0.633044 | 8.3:+62601747 | MS.gene57558:CDS |
| GTGAATCAGATAGTTGAAGG+AGG | 0.640969 | 8.3:-62601077 | None:intergenic |
| ATCGAGAGCAGGCACGATGG+AGG | 0.645992 | 8.3:+62601119 | MS.gene57558:CDS |
| GTGGTGACTGGAGCAAACAA+AGG | 0.662474 | 8.3:+62599480 | MS.gene57558:CDS |
| AGCTTCAGCTGGAATCAAAG+TGG | 0.664366 | 8.3:+62599530 | MS.gene57558:CDS |
| TGCAAGTGTAGCTTCTCTGG+CGG | 0.669030 | 8.3:+62599659 | MS.gene57558:CDS |
| AACAAAATCAGATAAACCAG+AGG | 0.674498 | 8.3:-62599607 | None:intergenic |
| ATCATCGAGAGCAGGCACGA+TGG | 0.681338 | 8.3:+62601116 | MS.gene57558:CDS |
| TAAACTAATCATGACAAAGG+GGG | 0.699761 | 8.3:+62600551 | MS.gene57558:CDS |
| GGTGGAATTGAAATCAACGA+CGG | 0.720856 | 8.3:+62600516 | MS.gene57558:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTTTAAATTTTTAT+AGG | + | chr8.3:62601520-62601539 | MS.gene57558:intron | 0.0% |
| !!! | TTCTAATTTTACTAAATTAT+TGG | - | chr8.3:62601427-62601446 | None:intergenic | 10.0% |
| !! | AAAATGAAAACATGATAAAA+TGG | + | chr8.3:62600275-62600294 | MS.gene57558:intron | 15.0% |
| !! | AAAATGAAATAACTTTATTC+TGG | - | chr8.3:62602001-62602020 | None:intergenic | 15.0% |
| !! | AAATGAAAACATGATAAAAT+GGG | + | chr8.3:62600276-62600295 | MS.gene57558:intron | 15.0% |
| !! | ATCTATAAGATTTAAAAACA+TGG | - | chr8.3:62599423-62599442 | None:intergenic | 15.0% |
| !! | CATTCAAATAAATTATTATG+GGG | + | chr8.3:62601026-62601045 | MS.gene57558:CDS | 15.0% |
| !! | GCATTCAAATAAATTATTAT+GGG | + | chr8.3:62601025-62601044 | MS.gene57558:CDS | 15.0% |
| !! | TGCATTCAAATAAATTATTA+TGG | + | chr8.3:62601024-62601043 | MS.gene57558:CDS | 15.0% |
| !! | AAAAATCTTGATAAGTTTAG+TGG | - | chr8.3:62600703-62600722 | None:intergenic | 20.0% |
| !! | AAAATCTTGATAAGTTTAGT+GGG | - | chr8.3:62600702-62600721 | None:intergenic | 20.0% |
| !! | ATAAGATTTAAAAACATGGT+TGG | - | chr8.3:62599419-62599438 | None:intergenic | 20.0% |
| !! | ATACATTCTTAACAAAAATG+TGG | - | chr8.3:62600734-62600753 | None:intergenic | 20.0% |
| !! | ATATTCGTCAAAAAATGTAA+TGG | - | chr8.3:62601209-62601228 | None:intergenic | 20.0% |
| !! | TTGTGCTGAAAATAAAAAAT+AGG | - | chr8.3:62601320-62601339 | None:intergenic | 20.0% |
| !!! | AATATTGACCATATTTTCAT+TGG | + | chr8.3:62601397-62601416 | MS.gene57558:intron | 20.0% |
| !!! | TATATCATGACAATTTTATG+TGG | - | chr8.3:62600801-62600820 | None:intergenic | 20.0% |
| !!! | TGTTTTTAGAAGTTTTGATA+TGG | + | chr8.3:62601489-62601508 | MS.gene57558:intron | 20.0% |
| !!! | TTATCAAAGATTTTGAAGAA+GGG | + | chr8.3:62601730-62601749 | MS.gene57558:CDS | 20.0% |
| !!! | TTTATCAAAGATTTTGAAGA+AGG | + | chr8.3:62601729-62601748 | MS.gene57558:CDS | 20.0% |
| !!! | TTTCTAGTAAAAGTTTATAC+TGG | + | chr8.3:62601349-62601368 | MS.gene57558:intron | 20.0% |
| ! | ACTAAACTAATCATGACAAA+GGG | + | chr8.3:62600549-62600568 | MS.gene57558:CDS | 25.0% |
| ! | ATCAGTATGTATCAAATGAA+TGG | + | chr8.3:62601640-62601659 | MS.gene57558:intron | 25.0% |
| ! | CAATTTCTAAATCATGCAAA+TGG | - | chr8.3:62599934-62599953 | None:intergenic | 25.0% |
| ! | GAGAATAGATGAAGTAATAA+AGG | + | chr8.3:62601704-62601723 | MS.gene57558:CDS | 25.0% |
| ! | GCTAATGCAAATTTAGTTAA+AGG | - | chr8.3:62601594-62601613 | None:intergenic | 25.0% |
| ! | TAACACTGAATTAAATGTCA+AGG | - | chr8.3:62599727-62599746 | None:intergenic | 25.0% |
| ! | TCAGTATGTATCAAATGAAT+GGG | + | chr8.3:62601641-62601660 | MS.gene57558:intron | 25.0% |
| ! | TTCTTAACAAAAATGTGGTT+TGG | - | chr8.3:62600729-62600748 | None:intergenic | 25.0% |
| ! | TTGGTATACCAATGAAAATA+TGG | - | chr8.3:62601408-62601427 | None:intergenic | 25.0% |
| ! | TTTAGTGGGATATTGAAATT+TGG | - | chr8.3:62600688-62600707 | None:intergenic | 25.0% |
| !! | GATTTTGTCAAATCTCAATT+TGG | + | chr8.3:62599681-62599700 | MS.gene57558:CDS | 25.0% |
| !!! | AGGTTTTTTTCATCAAAGTT+AGG | - | chr8.3:62600108-62600127 | None:intergenic | 25.0% |
| !!! | GGTTTTTTTCATCAAAGTTA+GGG | - | chr8.3:62600107-62600126 | None:intergenic | 25.0% |
| !!! | TTGAAATTTGGTGTTTTGAT+TGG | - | chr8.3:62600676-62600695 | None:intergenic | 25.0% |
| !!! | TTTTTCCTGATATTTAAAGC+CGG | + | chr8.3:62600158-62600177 | MS.gene57558:intron | 25.0% |
| AACAAAATCAGATAAACCAG+AGG | - | chr8.3:62599610-62599629 | None:intergenic | 30.0% | |
| AATGGACGAGATAAATAACA+AGG | - | chr8.3:62600594-62600613 | None:intergenic | 30.0% | |
| ACAATACCTCATAAAAAGGA+GGG | - | chr8.3:62600007-62600026 | None:intergenic | 30.0% | |
| ACCTGTATTAGCAGTTATAT+CGG | - | chr8.3:62601895-62601914 | None:intergenic | 30.0% | |
| AGAAACTTGTAATGACAACT+AGG | - | chr8.3:62600413-62600432 | None:intergenic | 30.0% | |
| ATGGACGAGATAAATAACAA+GGG | - | chr8.3:62600593-62600612 | None:intergenic | 30.0% | |
| ATTTGGCAAACTTGATATTC+TGG | + | chr8.3:62599698-62599717 | MS.gene57558:CDS | 30.0% | |
| CAACATCTGAGGATTAAAAA+TGG | + | chr8.3:62599858-62599877 | MS.gene57558:intron | 30.0% | |
| CACTAAACTAATCATGACAA+AGG | + | chr8.3:62600548-62600567 | MS.gene57558:CDS | 30.0% | |
| CTAAACTAATCATGACAAAG+GGG | + | chr8.3:62600550-62600569 | MS.gene57558:CDS | 30.0% | |
| GAAAAAAACCTACTTTCATC+TGG | + | chr8.3:62600117-62600136 | MS.gene57558:intron | 30.0% | |
| GAACAAAGATTGTATTGCAT+AGG | + | chr8.3:62600476-62600495 | MS.gene57558:intron | 30.0% | |
| GTAAAAGTTTATACTGGACT+TGG | + | chr8.3:62601355-62601374 | MS.gene57558:intron | 30.0% | |
| GTCTACAATACCTCATAAAA+AGG | - | chr8.3:62600011-62600030 | None:intergenic | 30.0% | |
| GTTCAAAATGATCGAGATAA+TGG | - | chr8.3:62600612-62600631 | None:intergenic | 30.0% | |
| TAAACTAATCATGACAAAGG+GGG | + | chr8.3:62600551-62600570 | MS.gene57558:CDS | 30.0% | |
| TAAATCTACGAAATGCAACA+TGG | - | chr8.3:62600370-62600389 | None:intergenic | 30.0% | |
| TACAATACCTCATAAAAAGG+AGG | - | chr8.3:62600008-62600027 | None:intergenic | 30.0% | |
| TATGTTAACTGTGTCAAAAC+TGG | + | chr8.3:62600886-62600905 | MS.gene57558:intron | 30.0% | |
| TCCTCAGATGTTGTAAAAAT+AGG | - | chr8.3:62599851-62599870 | None:intergenic | 30.0% | |
| ! | AACATGATAAAATGGGTTTG+AGG | + | chr8.3:62600283-62600302 | MS.gene57558:intron | 30.0% |
| ! | ACATGGCATTTTATATGACT+AGG | - | chr8.3:62600353-62600372 | None:intergenic | 30.0% |
| ! | AGAAGCTTTAGCAACAATAT+AGG | - | chr8.3:62601793-62601812 | None:intergenic | 30.0% |
| ! | ATAAAATGGGTTTGAGGATT+GGG | + | chr8.3:62600289-62600308 | MS.gene57558:intron | 30.0% |
| ! | ATCCTGAAATTTGAAACTAG+TGG | + | chr8.3:62600752-62600771 | MS.gene57558:intron | 30.0% |
| ! | CATGGCATTTTATATGACTA+GGG | - | chr8.3:62600352-62600371 | None:intergenic | 30.0% |
| ! | TCATGTTTTCATTTTCCATG+CGG | - | chr8.3:62600270-62600289 | None:intergenic | 30.0% |
| ! | TCCTGAAATTTGAAACTAGT+GGG | + | chr8.3:62600753-62600772 | MS.gene57558:intron | 30.0% |
| ! | TGTCTTGTGAAATTTGAAAC+TGG | + | chr8.3:62600842-62600861 | MS.gene57558:intron | 30.0% |
| !! | TTTTCCTGATATTTAAAGCC+GGG | + | chr8.3:62600159-62600178 | MS.gene57558:intron | 30.0% |
| !!! | TCCTATTTTTACAACATCTG+AGG | + | chr8.3:62599847-62599866 | MS.gene57558:intron | 30.0% |
| AAACCTACTTTCATCTGGTA+TGG | + | chr8.3:62600122-62600141 | MS.gene57558:intron | 35.0% | |
| AACATCACTGAAGACAACTT+TGG | - | chr8.3:62601667-62601686 | None:intergenic | 35.0% | |
| AACCTACTTTCATCTGGTAT+GGG | + | chr8.3:62600123-62600142 | MS.gene57558:intron | 35.0% | |
| ACACAATTGATGCAGAAGTT+AGG | - | chr8.3:62601852-62601871 | None:intergenic | 35.0% | |
| ACCGATATAACTGCTAATAC+AGG | + | chr8.3:62601891-62601910 | MS.gene57558:CDS | 35.0% | |
| ACTGCAAGAAATGAGAAAAG+AGG | + | chr8.3:62599558-62599577 | MS.gene57558:CDS | 35.0% | |
| ATATAGGCAGCTAAATACCT+AGG | - | chr8.3:62601777-62601796 | None:intergenic | 35.0% | |
| ATCTGATGAAGAATCGAGAA+GGG | + | chr8.3:62600969-62600988 | MS.gene57558:CDS | 35.0% | |
| ATTGCATAGGTTAACAATGC+AGG | + | chr8.3:62600489-62600508 | MS.gene57558:intron | 35.0% | |
| CATCTATTCTCTCTTCTGTT+AGG | - | chr8.3:62601695-62601714 | None:intergenic | 35.0% | |
| CATTACCTTAGCATGGTAAT+GGG | + | chr8.3:62600050-62600069 | MS.gene57558:intron | 35.0% | |
| CTTTGCAGTAATTCTTGTGT+AGG | - | chr8.3:62601823-62601842 | None:intergenic | 35.0% | |
| GGTATCTTCAAAGTTGAAGA+AGG | + | chr8.3:62601912-62601931 | MS.gene57558:CDS | 35.0% | |
| GGTTTGAAGAACTACGATAA+TGG | + | chr8.3:62600907-62600926 | MS.gene57558:intron | 35.0% | |
| TATCTGATGAAGAATCGAGA+AGG | + | chr8.3:62600968-62600987 | MS.gene57558:CDS | 35.0% | |
| TCATTACCTTAGCATGGTAA+TGG | + | chr8.3:62600049-62600068 | MS.gene57558:intron | 35.0% | |
| TGAATCAGATAGTTGAAGGA+GGG | - | chr8.3:62601079-62601098 | None:intergenic | 35.0% | |
| TTGCATAGGTTAACAATGCA+GGG | + | chr8.3:62600490-62600509 | MS.gene57558:intron | 35.0% | |
| TTGGTGAATCAGATAGTTGA+AGG | - | chr8.3:62601083-62601102 | None:intergenic | 35.0% | |
| ! | CATGACAATTTTATGTGGTG+AGG | - | chr8.3:62600796-62600815 | None:intergenic | 35.0% |
| ! | CATGTTTTCATTTTCCATGC+GGG | - | chr8.3:62600269-62600288 | None:intergenic | 35.0% |
| ! | CTTGTGAAATTTGAAACTGG+TGG | + | chr8.3:62600845-62600864 | MS.gene57558:intron | 35.0% |
| ! | CTTTATTCTGGCTATAGAAG+AGG | - | chr8.3:62601989-62602008 | None:intergenic | 35.0% |
| ! | GATAAAATGGGTTTGAGGAT+TGG | + | chr8.3:62600288-62600307 | MS.gene57558:intron | 35.0% |
| ! | GATGATACATTGACTACTCT+TGG | - | chr8.3:62601102-62601121 | None:intergenic | 35.0% |
| ! | TCCCACTAGTTTCAAATTTC+AGG | - | chr8.3:62600757-62600776 | None:intergenic | 35.0% |
| ! | TTGAGTTGTTCTTACTTTGC+AGG | + | chr8.3:62600939-62600958 | MS.gene57558:intron | 35.0% |
| ! | TTTAAGACTGCATAGCAAAG+TGG | - | chr8.3:62599391-62599410 | None:intergenic | 35.0% |
| ! | TTTCCTGATATTTAAAGCCG+GGG | + | chr8.3:62600160-62600179 | MS.gene57558:intron | 35.0% |
| ! | TTTTATGTGGTGAGGTAGTT+TGG | - | chr8.3:62600788-62600807 | None:intergenic | 35.0% |
| ! | TTTTCCAAACCAATCGTGAT+CGG | + | chr8.3:62600209-62600228 | MS.gene57558:intron | 35.0% |
| !!! | ATATCGGTTTTGACATAACC+AGG | - | chr8.3:62601879-62601898 | None:intergenic | 35.0% |
| !!! | TATCGGTTTTGACATAACCA+GGG | - | chr8.3:62601878-62601897 | None:intergenic | 35.0% |
| AAAACCTCATATTGCCACAG+AGG | + | chr8.3:62599813-62599832 | MS.gene57558:intron | 40.0% | |
| AACATCCATGATGCATGTAC+TGG | + | chr8.3:62600629-62600648 | MS.gene57558:intron | 40.0% | |
| ACATCCATGATGCATGTACT+GGG | + | chr8.3:62600630-62600649 | MS.gene57558:intron | 40.0% | |
| ACTGGAGCAAACAAAGGAAT+TGG | + | chr8.3:62599486-62599505 | MS.gene57558:CDS | 40.0% | |
| AGTTGTTCTTACTTTGCAGG+CGG | + | chr8.3:62600942-62600961 | MS.gene57558:intron | 40.0% | |
| ATACCTCATAAAAAGGAGGG+AGG | - | chr8.3:62600004-62600023 | None:intergenic | 40.0% | |
| ATCAAAGTTAGGGTGAGTTC+TGG | - | chr8.3:62600097-62600116 | None:intergenic | 40.0% | |
| ATGACTAGGGATGACAATGA+GGG | - | chr8.3:62600339-62600358 | None:intergenic | 40.0% | |
| GAAAAGAGGTCTTCATGCTT+TGG | + | chr8.3:62599572-62599591 | MS.gene57558:CDS | 40.0% | |
| GAATCAGATAGTTGAAGGAG+GGG | - | chr8.3:62601078-62601097 | None:intergenic | 40.0% | |
| GGTGGAATTGAAATCAACGA+CGG | + | chr8.3:62600516-62600535 | MS.gene57558:CDS | 40.0% | |
| GTGAATCAGATAGTTGAAGG+AGG | - | chr8.3:62601080-62601099 | None:intergenic | 40.0% | |
| TAGGTTAACAATGCAGGGAT+TGG | + | chr8.3:62600495-62600514 | MS.gene57558:intron | 40.0% | |
| TATCAGGAAAAACTCGAACC+TGG | - | chr8.3:62600150-62600169 | None:intergenic | 40.0% | |
| TATGACTAGGGATGACAATG+AGG | - | chr8.3:62600340-62600359 | None:intergenic | 40.0% | |
| TTGAAGAAGGGTCCTTAGAA+AGG | + | chr8.3:62601742-62601761 | MS.gene57558:CDS | 40.0% | |
| TTGGAAACACTCAAAACCTC+TGG | + | chr8.3:62599591-62599610 | MS.gene57558:CDS | 40.0% | |
| TTTCCAAACCAATCGTGATC+GGG | + | chr8.3:62600210-62600229 | MS.gene57558:intron | 40.0% | |
| ! | TTCCTGATATTTAAAGCCGG+GGG | + | chr8.3:62600161-62600180 | MS.gene57558:intron | 40.0% |
| AAAACCTTCCCGATCACGAT+TGG | - | chr8.3:62600221-62600240 | None:intergenic | 45.0% | |
| AAGACCCAGTACATGCATCA+TGG | - | chr8.3:62600637-62600656 | None:intergenic | 45.0% | |
| AGCTTCAGCTGGAATCAAAG+TGG | + | chr8.3:62599530-62599549 | MS.gene57558:CDS | 45.0% | |
| AGGCCAACCTTTCCTTTCTA+AGG | - | chr8.3:62601757-62601776 | None:intergenic | 45.0% | |
| AGGTTAGCACTACTTCCCAA+TGG | + | chr8.3:62601951-62601970 | MS.gene57558:CDS | 45.0% | |
| ATAGTTGAAGGAGGGGAAGA+AGG | - | chr8.3:62601071-62601090 | None:intergenic | 45.0% | |
| ATGGGTTTGAGGATTGGGAA+TGG | + | chr8.3:62600294-62600313 | MS.gene57558:intron | 45.0% | |
| GAAGGGTCCTTAGAAAGGAA+AGG | + | chr8.3:62601747-62601766 | MS.gene57558:CDS | 45.0% | |
| GACCCATACCAGATGAAAGT+AGG | - | chr8.3:62600128-62600147 | None:intergenic | 45.0% | |
| GCGAAGTCATTACCTTAGCA+TGG | + | chr8.3:62600043-62600062 | MS.gene57558:intron | 45.0% | |
| GGAAGTAGTGCTAACCTAAC+AGG | - | chr8.3:62601948-62601967 | None:intergenic | 45.0% | |
| GGTCCTTAGAAAGGAAAGGT+TGG | + | chr8.3:62601751-62601770 | MS.gene57558:CDS | 45.0% | |
| GTCAATGTATCATCGAGAGC+AGG | + | chr8.3:62601108-62601127 | MS.gene57558:CDS | 45.0% | |
| GTTAACAATGCAGGGATTGG+TGG | + | chr8.3:62600498-62600517 | MS.gene57558:CDS | 45.0% | |
| ! | AAAGTTAGGGTGAGTTCTGG+AGG | - | chr8.3:62600094-62600113 | None:intergenic | 45.0% |
| ! | AGTCCTCCCTCCTTTTTATG+AGG | + | chr8.3:62599998-62600017 | MS.gene57558:intron | 45.0% |
| ! | ATATTTAAAGCCGGGGGTGT+TGG | + | chr8.3:62600167-62600186 | MS.gene57558:intron | 45.0% |
| ! | GGATACTTTTCGTTCCTCTG+TGG | - | chr8.3:62599830-62599849 | None:intergenic | 45.0% |
| ! | GTTAAGCAGTTAGCTTCAGC+TGG | + | chr8.3:62599519-62599538 | MS.gene57558:CDS | 45.0% |
| !! | AAGTTAGGGTGAGTTCTGGA+GGG | - | chr8.3:62600093-62600112 | None:intergenic | 45.0% |
| !! | TAGAAAGGAAAGGTTGGCCT+AGG | + | chr8.3:62601757-62601776 | MS.gene57558:CDS | 45.0% |
| ACCTGAGGAAGAGAGACACA+AGG | - | chr8.3:62599455-62599474 | None:intergenic | 50.0% | |
| CAAACCAATCGTGATCGGGA+AGG | + | chr8.3:62600214-62600233 | MS.gene57558:intron | 50.0% | |
| CGTTCCTCTGTGGCAATATG+AGG | - | chr8.3:62599820-62599839 | None:intergenic | 50.0% | |
| CTAGGGATGACAATGAGGGT+CGG | - | chr8.3:62600335-62600354 | None:intergenic | 50.0% | |
| CTTCCCAATGGTAGTCCATC+TGG | + | chr8.3:62601963-62601982 | MS.gene57558:CDS | 50.0% | |
| CTTTCATCTGGTATGGGTCC+AGG | + | chr8.3:62600129-62600148 | MS.gene57558:intron | 50.0% | |
| GTGGTGACTGGAGCAAACAA+AGG | + | chr8.3:62599480-62599499 | MS.gene57558:CDS | 50.0% | |
| TAGGGATGACAATGAGGGTC+GGG | - | chr8.3:62600334-62600353 | None:intergenic | 50.0% | |
| TCCTTGTGTCTCTCTTCCTC+AGG | + | chr8.3:62599451-62599470 | MS.gene57558:intron | 50.0% | |
| TCTCTTCCTCAGGTATGCAG+TGG | + | chr8.3:62599461-62599480 | MS.gene57558:intron | 50.0% | |
| TGCAAGTGTAGCTTCTCTGG+CGG | + | chr8.3:62599659-62599678 | MS.gene57558:CDS | 50.0% | |
| TGCATCAATTGTGTGTGCCC+TGG | + | chr8.3:62601858-62601877 | MS.gene57558:CDS | 50.0% | |
| TGCTGCAAGTGTAGCTTCTC+TGG | + | chr8.3:62599656-62599675 | MS.gene57558:CDS | 50.0% | |
| TGGCTATAGAAGAGGCCAGA+TGG | - | chr8.3:62601981-62602000 | None:intergenic | 50.0% | |
| TGGGTCCCATTACCATGCTA+AGG | - | chr8.3:62600058-62600077 | None:intergenic | 50.0% | |
| ! | CTTCCCGATCACGATTGGTT+TGG | - | chr8.3:62600216-62600235 | None:intergenic | 50.0% |
| ! | TGATCGGGAAGGTTTTCCGT+GGG | + | chr8.3:62600225-62600244 | MS.gene57558:intron | 50.0% |
| ! | TTCATTTTCCATGCGGGCAG+AGG | - | chr8.3:62600263-62600282 | None:intergenic | 50.0% |
| !! | AAGGTGCTGCTCATCCTGTT+AGG | + | chr8.3:62601931-62601950 | MS.gene57558:CDS | 50.0% |
| !! | AGGCCAGATGGACTACCATT+GGG | - | chr8.3:62601969-62601988 | None:intergenic | 50.0% |
| !! | CACCCCCGGCTTTAAATATC+AGG | - | chr8.3:62600166-62600185 | None:intergenic | 50.0% |
| AAATTCTGCCTCTGCCCGCA+TGG | + | chr8.3:62600252-62600271 | MS.gene57558:intron | 55.0% | |
| ATCATCGAGAGCAGGCACGA+TGG | + | chr8.3:62601116-62601135 | MS.gene57558:CDS | 55.0% | |
| CAGTCACCACTGCATACCTG+AGG | - | chr8.3:62599470-62599489 | None:intergenic | 55.0% | |
| CTCAGGTATGCAGTGGTGAC+TGG | + | chr8.3:62599468-62599487 | MS.gene57558:intron | 55.0% | |
| GAGGCAGAATTTCCTCCCCA+CGG | - | chr8.3:62600244-62600263 | None:intergenic | 55.0% | |
| ! | GATCGGGAAGGTTTTCCGTG+GGG | + | chr8.3:62600226-62600245 | MS.gene57558:intron | 55.0% |
| ! | GTGATCGGGAAGGTTTTCCG+TGG | + | chr8.3:62600224-62600243 | MS.gene57558:intron | 55.0% |
| !! | GAGGCCAGATGGACTACCAT+TGG | - | chr8.3:62601970-62601989 | None:intergenic | 55.0% |
| !! | GGTAATGGGACCCACACATG+CGG | + | chr8.3:62600064-62600083 | MS.gene57558:intron | 55.0% |
| !! | TTTAAAGCCGGGGGTGTTGG+AGG | + | chr8.3:62600170-62600189 | MS.gene57558:intron | 55.0% |
| ATCGAGAGCAGGCACGATGG+AGG | + | chr8.3:62601119-62601138 | MS.gene57558:CDS | 60.0% | |
| ATCTCTGCCTCCAACACCCC+CGG | - | chr8.3:62600180-62600199 | None:intergenic | 60.0% | |
| TGGAGGGTAGCCGCATGTGT+GGG | - | chr8.3:62600077-62600096 | None:intergenic | 60.0% | |
| CTGGAGGGTAGCCGCATGTG+TGG | - | chr8.3:62600078-62600097 | None:intergenic | 65.0% | |
| ! | CGGGAAGGTTTTCCGTGGGG+AGG | + | chr8.3:62600229-62600248 | MS.gene57558:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 62599345 | 62602022 | 62599345 | ID=MS.gene57558 |
| chr8.3 | mRNA | 62599345 | 62602022 | 62599345 | ID=MS.gene57558.t1;Parent=MS.gene57558 |
| chr8.3 | exon | 62599345 | 62599364 | 62599345 | ID=MS.gene57558.t1.exon1;Parent=MS.gene57558.t1 |
| chr8.3 | CDS | 62599345 | 62599364 | 62599345 | ID=cds.MS.gene57558.t1;Parent=MS.gene57558.t1 |
| chr8.3 | exon | 62599473 | 62599719 | 62599473 | ID=MS.gene57558.t1.exon2;Parent=MS.gene57558.t1 |
| chr8.3 | CDS | 62599473 | 62599719 | 62599473 | ID=cds.MS.gene57558.t1;Parent=MS.gene57558.t1 |
| chr8.3 | exon | 62600498 | 62600572 | 62600498 | ID=MS.gene57558.t1.exon3;Parent=MS.gene57558.t1 |
| chr8.3 | CDS | 62600498 | 62600572 | 62600498 | ID=cds.MS.gene57558.t1;Parent=MS.gene57558.t1 |
| chr8.3 | exon | 62600961 | 62601140 | 62600961 | ID=MS.gene57558.t1.exon4;Parent=MS.gene57558.t1 |
| chr8.3 | CDS | 62600961 | 62601140 | 62600961 | ID=cds.MS.gene57558.t1;Parent=MS.gene57558.t1 |
| chr8.3 | exon | 62601645 | 62602022 | 62601645 | ID=MS.gene57558.t1.exon5;Parent=MS.gene57558.t1 |
| chr8.3 | CDS | 62601645 | 62602022 | 62601645 | ID=cds.MS.gene57558.t1;Parent=MS.gene57558.t1 |
| Gene Sequence |
| Protein sequence |
