Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58272.t1 | RHN39977.1 | 90.7 | 301 | 26 | 1 | 1 | 301 | 51 | 349 | 3.50E-146 | 527.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58272.t1 | Q9M2E2 | 55.3 | 304 | 125 | 6 | 1 | 301 | 1 | 296 | 3.3e-84 | 313.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58272.t1 | G7LBT4 | 90.7 | 301 | 26 | 1 | 1 | 301 | 1 | 299 | 2.5e-146 | 527.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58272.t1 | MTR_8g031940 | 90.698 | 301 | 26 | 1 | 1 | 301 | 1 | 299 | 0.0 | 553 |
| MS.gene58272.t1 | MTR_8g031980 | 81.395 | 301 | 53 | 1 | 1 | 301 | 1 | 298 | 1.59e-179 | 497 |
| MS.gene58272.t1 | MTR_8g031960 | 81.081 | 296 | 52 | 2 | 7 | 301 | 8 | 300 | 1.67e-174 | 484 |
| MS.gene58272.t1 | MTR_8g031990 | 68.439 | 301 | 92 | 1 | 1 | 301 | 1 | 298 | 2.45e-149 | 421 |
| MS.gene58272.t1 | MTR_8g032010 | 67.442 | 301 | 95 | 1 | 1 | 301 | 1 | 298 | 1.62e-147 | 416 |
| MS.gene58272.t1 | MTR_8g032020 | 67.110 | 301 | 95 | 2 | 2 | 301 | 3 | 300 | 1.21e-144 | 409 |
| MS.gene58272.t1 | MTR_8g032000 | 65.781 | 301 | 100 | 1 | 1 | 301 | 1 | 298 | 2.51e-144 | 408 |
| MS.gene58272.t1 | MTR_7g076660 | 58.472 | 301 | 110 | 3 | 1 | 301 | 1 | 286 | 4.63e-123 | 353 |
| MS.gene58272.t1 | MTR_7g076660 | 58.446 | 296 | 108 | 3 | 6 | 301 | 7 | 287 | 3.72e-121 | 349 |
| MS.gene58272.t1 | MTR_7g076655 | 57.475 | 301 | 113 | 3 | 1 | 301 | 1 | 286 | 2.99e-120 | 347 |
| MS.gene58272.t1 | MTR_8g031600 | 57.096 | 303 | 123 | 3 | 1 | 301 | 1 | 298 | 1.03e-118 | 343 |
| MS.gene58272.t1 | MTR_8g031630 | 55.629 | 302 | 128 | 4 | 1 | 301 | 1 | 297 | 4.48e-114 | 331 |
| MS.gene58272.t1 | MTR_8g031610 | 56.376 | 298 | 123 | 4 | 5 | 301 | 3 | 294 | 6.20e-113 | 328 |
| MS.gene58272.t1 | MTR_8g031910 | 56.908 | 304 | 111 | 5 | 1 | 301 | 1 | 287 | 8.35e-113 | 328 |
| MS.gene58272.t1 | MTR_7g076660 | 57.971 | 276 | 101 | 3 | 26 | 301 | 2 | 262 | 1.25e-110 | 321 |
| MS.gene58272.t1 | MTR_8g031900 | 53.488 | 301 | 132 | 3 | 1 | 301 | 1 | 293 | 1.57e-110 | 322 |
| MS.gene58272.t1 | MTR_8g031650 | 55.631 | 293 | 124 | 4 | 10 | 301 | 104 | 391 | 4.41e-108 | 319 |
| MS.gene58272.t1 | MTR_8g031650 | 56.190 | 105 | 43 | 2 | 169 | 272 | 1 | 103 | 5.99e-35 | 130 |
| MS.gene58272.t1 | MTR_8g031650 | 55.631 | 293 | 124 | 4 | 10 | 301 | 270 | 557 | 2.66e-106 | 320 |
| MS.gene58272.t1 | MTR_8g031650 | 56.044 | 273 | 115 | 3 | 1 | 272 | 1 | 269 | 1.50e-100 | 305 |
| MS.gene58272.t1 | MTR_5g062280 | 53.156 | 301 | 135 | 3 | 1 | 301 | 1 | 295 | 1.57e-105 | 310 |
| MS.gene58272.t1 | MTR_7g076665 | 54.636 | 302 | 129 | 3 | 1 | 301 | 1 | 295 | 4.16e-105 | 308 |
| MS.gene58272.t1 | MTR_3g079320 | 50.825 | 303 | 138 | 5 | 5 | 301 | 9 | 306 | 3.97e-91 | 273 |
| MS.gene58272.t1 | MTR_7g106800 | 48.333 | 300 | 92 | 4 | 7 | 301 | 9 | 250 | 1.41e-84 | 255 |
| MS.gene58272.t1 | MTR_8g032030 | 75.429 | 175 | 42 | 1 | 1 | 174 | 1 | 175 | 2.02e-84 | 253 |
| MS.gene58272.t1 | MTR_8g031850 | 45.183 | 301 | 119 | 4 | 1 | 301 | 1 | 255 | 3.33e-83 | 251 |
| MS.gene58272.t1 | MTR_3g098470 | 38.870 | 301 | 144 | 6 | 4 | 293 | 32 | 303 | 4.71e-61 | 196 |
| MS.gene58272.t1 | MTR_5g083430 | 53.143 | 175 | 79 | 1 | 127 | 301 | 13 | 184 | 4.85e-60 | 189 |
| MS.gene58272.t1 | MTR_1g031180 | 37.874 | 301 | 147 | 8 | 4 | 293 | 37 | 308 | 1.00e-52 | 175 |
| MS.gene58272.t1 | MTR_4g087460 | 36.306 | 314 | 156 | 9 | 4 | 301 | 19 | 304 | 8.62e-52 | 172 |
| MS.gene58272.t1 | MTR_8g096060 | 36.545 | 301 | 148 | 9 | 4 | 293 | 34 | 302 | 2.84e-49 | 166 |
| MS.gene58272.t1 | MTR_4g105310 | 27.157 | 313 | 154 | 13 | 9 | 300 | 51 | 310 | 2.08e-11 | 64.3 |
| MS.gene58272.t1 | MTR_4g105310 | 27.612 | 268 | 134 | 11 | 9 | 269 | 51 | 265 | 2.97e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58272.t1 | AT3G61220 | 55.263 | 304 | 125 | 6 | 1 | 301 | 1 | 296 | 9.33e-113 | 328 |
| MS.gene58272.t1 | AT3G61220 | 55.705 | 298 | 121 | 6 | 7 | 301 | 14 | 303 | 3.93e-111 | 324 |
| MS.gene58272.t1 | AT3G61220 | 55.705 | 298 | 121 | 6 | 7 | 301 | 38 | 327 | 1.10e-110 | 324 |
| MS.gene58272.t1 | AT1G01800 | 54.545 | 297 | 127 | 5 | 7 | 301 | 5 | 295 | 2.08e-108 | 317 |
| MS.gene58272.t1 | AT2G24190 | 52.961 | 304 | 132 | 6 | 1 | 301 | 1 | 296 | 2.98e-108 | 317 |
| MS.gene58272.t1 | AT2G24190 | 53.356 | 298 | 128 | 6 | 7 | 301 | 12 | 301 | 1.10e-106 | 313 |
| MS.gene58272.t1 | AT1G01800 | 51.415 | 212 | 97 | 3 | 90 | 301 | 55 | 260 | 9.08e-71 | 220 |
| MS.gene58272.t1 | AT5G51030 | 37.217 | 309 | 154 | 8 | 4 | 301 | 35 | 314 | 2.30e-58 | 190 |
| MS.gene58272.t1 | AT3G59710 | 38.514 | 296 | 149 | 8 | 6 | 297 | 28 | 294 | 2.20e-54 | 179 |
| MS.gene58272.t1 | AT3G59710 | 38.514 | 296 | 149 | 8 | 6 | 297 | 18 | 284 | 2.83e-54 | 178 |
| MS.gene58272.t1 | AT5G61830 | 38.742 | 302 | 146 | 8 | 4 | 293 | 34 | 308 | 3.25e-54 | 179 |
| MS.gene58272.t1 | AT5G61830 | 38.742 | 302 | 146 | 8 | 4 | 293 | 34 | 308 | 3.25e-54 | 179 |
| MS.gene58272.t1 | AT3G59710 | 38.514 | 296 | 149 | 8 | 6 | 297 | 47 | 313 | 6.49e-54 | 178 |
Find 55 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATATCAAGTTTGCCAAAT+TGG | 0.158459 | 8.4:-64829893 | None:intergenic |
| AACCGTTAACAAACCGTTAT+TGG | 0.210322 | 8.4:-64832125 | None:intergenic |
| GTTAACAATGCAGGGATTAT+TGG | 0.223601 | 8.4:+64830418 | MS.gene58272:CDS |
| ATTTGGCAAACTTGATATTC+TGG | 0.229964 | 8.4:+64829896 | MS.gene58272:CDS |
| TGTTTGCAAACAAATTATTA+TGG | 0.282681 | 8.4:+64831097 | MS.gene58272:CDS |
| TGACAAAGAGTTTCTTAATC+TGG | 0.289168 | 8.4:+64830453 | MS.gene58272:CDS |
| TTTCTCTTCTGTAAGGTTAT+CGG | 0.295049 | 8.4:-64831897 | None:intergenic |
| GATGATACATTCACAATTCT+TGG | 0.302082 | 8.4:-64831172 | None:intergenic |
| TTGGAAACACTCAAAGCTTC+TGG | 0.307436 | 8.4:+64829789 | MS.gene58272:CDS |
| GTGAATGTATCATCCACTTT+GGG | 0.326234 | 8.4:+64831181 | MS.gene58272:CDS |
| CAATGGCTGGCCTAAGACTT+TGG | 0.331360 | 8.4:+64831985 | MS.gene58272:CDS |
| ATTCCCAATGGTAGTCCTTC+TGG | 0.337637 | 8.4:+64832184 | MS.gene58272:CDS |
| AATATCAAGTTTGCCAAATT+GGG | 0.350754 | 8.4:-64829892 | None:intergenic |
| GAAAAGAGGTCTTCATGCTT+TGG | 0.381657 | 8.4:+64829770 | MS.gene58272:CDS |
| ATCCACTTTGGGGCAGTTAG+AGG | 0.392630 | 8.4:+64831192 | MS.gene58272:CDS |
| ACTGGAGCAAACAAAGGAAT+TGG | 0.400758 | 8.4:+64829684 | MS.gene58272:CDS |
| TGCCAATAACGGTTTGTTAA+CGG | 0.401780 | 8.4:+64832123 | MS.gene58272:CDS |
| CATCTACTTTCTCTTCTGTA+AGG | 0.402130 | 8.4:-64831904 | None:intergenic |
| TTTCTAGAAGATTTCAAAGA+AGG | 0.405469 | 8.4:+64831941 | MS.gene58272:CDS |
| GTCAGGTATGCAGTGGTGAC+TGG | 0.406333 | 8.4:+64829666 | MS.gene58272:intron |
| ACACTATTGATGCATATAGT+AGG | 0.433012 | 8.4:-64832070 | None:intergenic |
| GAATTGGATTAGAGATAGTA+AGG | 0.433738 | 8.4:+64829700 | MS.gene58272:CDS |
| ATATAAGCTCCCAAAGTCTT+AGG | 0.442458 | 8.4:-64831995 | None:intergenic |
| AATGGCTGGCCTAAGACTTT+GGG | 0.446503 | 8.4:+64831986 | MS.gene58272:CDS |
| TGTGAATGTATCATCCACTT+TGG | 0.452489 | 8.4:+64831180 | MS.gene58272:CDS |
| TCATTGCAGGTTAACAATGC+AGG | 0.478904 | 8.4:+64830409 | MS.gene58272:intron |
| AATTAGATTATGACAATGGC+TGG | 0.479112 | 8.4:+64831972 | MS.gene58272:CDS |
| AATTCGAGAACTTAATCAAA+AGG | 0.483295 | 8.4:-64832236 | None:intergenic |
| GTAAGGCAGTTAGCTTCAGC+TGG | 0.501587 | 8.4:+64829717 | MS.gene58272:CDS |
| TGCATCAATAGTGTTTGTCC+TGG | 0.525422 | 8.4:+64832079 | MS.gene58272:CDS |
| CATTGCAGGTTAACAATGCA+GGG | 0.526650 | 8.4:+64830410 | MS.gene58272:intron |
| ATCTGGCTATCTACAACCGT+GGG | 0.533389 | 8.4:+64830470 | MS.gene58272:CDS |
| AATCTGGCTATCTACAACCG+TGG | 0.539912 | 8.4:+64830469 | MS.gene58272:CDS |
| CAACTCCAGAGTATACCAAA+TGG | 0.540082 | 8.4:+64831848 | MS.gene58272:intron |
| TTAGAATTAGATTATGACAA+TGG | 0.542672 | 8.4:+64831968 | MS.gene58272:CDS |
| GGTTTGTTAACGGTTGAAGA+AGG | 0.550234 | 8.4:+64832133 | MS.gene58272:CDS |
| TGTCTTTCATCAACTAGATG+TGG | 0.551632 | 8.4:+64829827 | MS.gene58272:CDS |
| TTGCCAGAAGGACTACCATT+GGG | 0.562032 | 8.4:-64832187 | None:intergenic |
| CTTGCCAGAAGGACTACCAT+TGG | 0.563410 | 8.4:-64832188 | None:intergenic |
| ACAGATATAACTGCCAATAA+CGG | 0.574376 | 8.4:+64832112 | MS.gene58272:CDS |
| ACTGCAAGAGATGAGAAAAG+AGG | 0.582556 | 8.4:+64829756 | MS.gene58272:CDS |
| TACCTCTAACTGCCCCAAAG+TGG | 0.586859 | 8.4:-64831194 | None:intergenic |
| AAAAGGAAGACATTTCAGTC+CGG | 0.588047 | 8.4:-64832219 | None:intergenic |
| TTTGACAAAATGTGCAAGAG+AGG | 0.592711 | 8.4:-64829868 | None:intergenic |
| CGGTAAAAGAACTTGCCAGA+AGG | 0.596398 | 8.4:-64832199 | None:intergenic |
| AGATGGGAGAAACTGCAGAA+AGG | 0.611031 | 8.4:+64829500 | None:intergenic |
| TCCAGAGTATACCAAATGGA+TGG | 0.620884 | 8.4:+64831852 | MS.gene58272:intron |
| TGAATGTATCATCCACTTTG+GGG | 0.628075 | 8.4:+64831182 | MS.gene58272:CDS |
| TGAGTTTGTCAGGTATGCAG+TGG | 0.652347 | 8.4:+64829659 | MS.gene58272:intron |
| AAGCTAGCACTAATTCCCAA+TGG | 0.659925 | 8.4:+64832172 | MS.gene58272:CDS |
| GTGGTGACTGGAGCAAACAA+AGG | 0.662474 | 8.4:+64829678 | MS.gene58272:CDS |
| AGCTTCAGCTGGAATCAAAG+TGG | 0.664366 | 8.4:+64829728 | MS.gene58272:CDS |
| ATATCTGTTATAGTATAACC+AGG | 0.664789 | 8.4:-64832097 | None:intergenic |
| TCAAACATATGAATTAGCTG+AGG | 0.676154 | 8.4:+64831072 | MS.gene58272:CDS |
| TCTGGCTATCTACAACCGTG+GGG | 0.756741 | 8.4:+64830471 | MS.gene58272:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGTGAAAAAATGAAAA+TGG | - | chr8.4:64829603-64829622 | None:intergenic | 15.0% |
| !! | AAAAGTGAAAAAATGAAAAT+GGG | - | chr8.4:64829602-64829621 | None:intergenic | 15.0% |
| !! | AGAGAATGATAAAAAAAATA+TGG | - | chr8.4:64830189-64830208 | None:intergenic | 15.0% |
| !! | GTATGTTAATCATAAAATTT+GGG | - | chr8.4:64830805-64830824 | None:intergenic | 15.0% |
| !! | TTCACTTATAAAGATAATTT+GGG | - | chr8.4:64830733-64830752 | None:intergenic | 15.0% |
| !! | AAACTATGTGGTATTATTAA+TGG | + | chr8.4:64831687-64831706 | MS.gene58272:intron | 20.0% |
| !! | AAACTGAACAATAAATTTGA+CGG | - | chr8.4:64831406-64831425 | None:intergenic | 20.0% |
| !! | ATGAAAATTTCCATTAATTC+TGG | + | chr8.4:64830872-64830891 | MS.gene58272:intron | 20.0% |
| !! | CATGATATATGTTATGTAAA+TGG | + | chr8.4:64830926-64830945 | MS.gene58272:intron | 20.0% |
| !! | CTTCACTTATAAAGATAATT+TGG | - | chr8.4:64830734-64830753 | None:intergenic | 20.0% |
| !! | GGTATGTTAATCATAAAATT+TGG | - | chr8.4:64830806-64830825 | None:intergenic | 20.0% |
| !! | TGTTTGCAAACAAATTATTA+TGG | + | chr8.4:64831097-64831116 | MS.gene58272:CDS | 20.0% |
| !! | TTAGAATTAGATTATGACAA+TGG | + | chr8.4:64831968-64831987 | MS.gene58272:CDS | 20.0% |
| !! | TTGTAACAAAATATAACAAG+TGG | - | chr8.4:64830257-64830276 | None:intergenic | 20.0% |
| !!! | AAAACTTAGTCTTATAAAAC+CGG | - | chr8.4:64830776-64830795 | None:intergenic | 20.0% |
| !!! | AAATTTTCATTTCTTTATCG+AGG | - | chr8.4:64830862-64830881 | None:intergenic | 20.0% |
| !!! | AACCTATCAAATTGATTTAA+TGG | - | chr8.4:64830304-64830323 | None:intergenic | 20.0% |
| !!! | AATATGCCATTTATTTTTGT+TGG | - | chr8.4:64830984-64831003 | None:intergenic | 20.0% |
| !!! | TAAGTTAGAATCTATTTTAG+AGG | - | chr8.4:64831342-64831361 | None:intergenic | 20.0% |
| !!! | TGTTTTTCTGTTTATACTTA+AGG | - | chr8.4:64831554-64831573 | None:intergenic | 20.0% |
| !!! | TTTTGAGTTAAATAACACAA+TGG | + | chr8.4:64829999-64830018 | MS.gene58272:intron | 20.0% |
| ! | AAATATATGATTACAAGCAC+AGG | - | chr8.4:64829545-64829564 | None:intergenic | 25.0% |
| ! | AATACAACAAATTGAAATCG+CGG | + | chr8.4:64830066-64830085 | MS.gene58272:intron | 25.0% |
| ! | AATATCAAGTTTGCCAAATT+GGG | - | chr8.4:64829895-64829914 | None:intergenic | 25.0% |
| ! | AATCCAAGATACACTTATTA+AGG | - | chr8.4:64831237-64831256 | None:intergenic | 25.0% |
| ! | AGAAACTATGTGAATATAAG+CGG | + | chr8.4:64831745-64831764 | MS.gene58272:intron | 25.0% |
| ! | ATATCTGTTATAGTATAACC+AGG | - | chr8.4:64832100-64832119 | None:intergenic | 25.0% |
| ! | ATCTTGCCAACAAAAATAAA+TGG | + | chr8.4:64830975-64830994 | MS.gene58272:intron | 25.0% |
| ! | ATTGCAAATAATGACTAACA+AGG | - | chr8.4:64830164-64830183 | None:intergenic | 25.0% |
| ! | CTGGCTTATTATGTTATATT+CGG | - | chr8.4:64830570-64830589 | None:intergenic | 25.0% |
| ! | CTTATAAAGATAATTTGGGT+TGG | - | chr8.4:64830729-64830748 | None:intergenic | 25.0% |
| ! | GATTTCAAACCAATTAATAG+TGG | + | chr8.4:64831647-64831666 | MS.gene58272:intron | 25.0% |
| ! | GTTAATCATAAAATTTGGGT+TGG | - | chr8.4:64830801-64830820 | None:intergenic | 25.0% |
| ! | TAGAACATCTGATAAGATAT+TGG | + | chr8.4:64829953-64829972 | MS.gene58272:intron | 25.0% |
| ! | TGAAGACAACAAATTAATCA+TGG | + | chr8.4:64831291-64831310 | MS.gene58272:intron | 25.0% |
| ! | TGCATATATAGAAAATGAGA+AGG | - | chr8.4:64830368-64830387 | None:intergenic | 25.0% |
| ! | TGCCATTAAATCAATTTGAT+AGG | + | chr8.4:64830299-64830318 | MS.gene58272:intron | 25.0% |
| ! | TGGCTTATTATGTTATATTC+GGG | - | chr8.4:64830569-64830588 | None:intergenic | 25.0% |
| ! | TTACGAGATAATGATAAAGA+TGG | - | chr8.4:64831785-64831804 | None:intergenic | 25.0% |
| !! | AATCCGTTTCCAAATTTTAA+AGG | - | chr8.4:64831583-64831602 | None:intergenic | 25.0% |
| !! | TTGGTGAATCAGATAATTTT+AGG | - | chr8.4:64831156-64831175 | None:intergenic | 25.0% |
| !! | TTTCTAGAAGATTTCAAAGA+AGG | + | chr8.4:64831941-64831960 | MS.gene58272:CDS | 25.0% |
| !!! | AAATTTCTTGATAGCTTTGA+AGG | + | chr8.4:64830332-64830351 | MS.gene58272:intron | 25.0% |
| !!! | AATTTCTTGATAGCTTTGAA+GGG | + | chr8.4:64830333-64830352 | MS.gene58272:intron | 25.0% |
| !!! | CAAACTTAGTCTTATAAAAC+CGG | - | chr8.4:64830704-64830723 | None:intergenic | 25.0% |
| !!! | GTATGATTTTTTCGCATTTA+CGG | + | chr8.4:64829918-64829937 | MS.gene58272:intron | 25.0% |
| !!! | GTCATGATGAAAATTGATTT+TGG | - | chr8.4:64831451-64831470 | None:intergenic | 25.0% |
| !!! | TGAATCAGATAATTTTAGGA+GGG | - | chr8.4:64831152-64831171 | None:intergenic | 25.0% |
| !!! | TTGCCTTTAAAATTTGGAAA+CGG | + | chr8.4:64831577-64831596 | MS.gene58272:intron | 25.0% |
| AAATCCTGGTCATAATGTTT+AGG | + | chr8.4:64831494-64831513 | MS.gene58272:intron | 30.0% | |
| AAGATACACTTATTAAGGCA+AGG | - | chr8.4:64831232-64831251 | None:intergenic | 30.0% | |
| AAGGTTTAACTCTTCCATAA+GGG | - | chr8.4:64831260-64831279 | None:intergenic | 30.0% | |
| AATTAGATTATGACAATGGC+TGG | + | chr8.4:64831972-64831991 | MS.gene58272:CDS | 30.0% | |
| ACACTATTGATGCATATAGT+AGG | - | chr8.4:64832073-64832092 | None:intergenic | 30.0% | |
| ACAGATATAACTGCCAATAA+CGG | + | chr8.4:64832112-64832131 | MS.gene58272:CDS | 30.0% | |
| ACATCTGATAAGATATTGGA+CGG | + | chr8.4:64829957-64829976 | MS.gene58272:intron | 30.0% | |
| AGTCATTCTCCACTATTAAT+TGG | - | chr8.4:64831659-64831678 | None:intergenic | 30.0% | |
| ATGTCACAACAAAACATACA+AGG | - | chr8.4:64830124-64830143 | None:intergenic | 30.0% | |
| ATTTGGCAAACTTGATATTC+TGG | + | chr8.4:64829896-64829915 | MS.gene58272:CDS | 30.0% | |
| CAAATGCTTGAATATGTATC+TGG | + | chr8.4:64830226-64830245 | MS.gene58272:intron | 30.0% | |
| CAGATACATATTCAAGCATT+TGG | - | chr8.4:64830228-64830247 | None:intergenic | 30.0% | |
| GAATATCAAGTTTGCCAAAT+TGG | - | chr8.4:64829896-64829915 | None:intergenic | 30.0% | |
| GATAATGATAAAGATGGTGA+TGG | - | chr8.4:64831779-64831798 | None:intergenic | 30.0% | |
| GATGATACATTCACAATTCT+TGG | - | chr8.4:64831175-64831194 | None:intergenic | 30.0% | |
| GTAAATGGTCTCATTGTTAA+TGG | + | chr8.4:64830941-64830960 | MS.gene58272:intron | 30.0% | |
| TAACAAAAGTTGTTCATTGC+AGG | + | chr8.4:64830396-64830415 | MS.gene58272:intron | 30.0% | |
| TAAGGTTTAACTCTTCCATA+AGG | - | chr8.4:64831261-64831280 | None:intergenic | 30.0% | |
| TAGATTGACATAAAGCATAG+TGG | - | chr8.4:64830900-64830919 | None:intergenic | 30.0% | |
| TATACCTAAACATTATGACC+AGG | - | chr8.4:64831501-64831520 | None:intergenic | 30.0% | |
| TCAAACATATGAATTAGCTG+AGG | + | chr8.4:64831072-64831091 | MS.gene58272:CDS | 30.0% | |
| TGACAAAGAGTTTCTTAATC+TGG | + | chr8.4:64830453-64830472 | MS.gene58272:CDS | 30.0% | |
| TTGACGGTAAAAATCATGTT+TGG | - | chr8.4:64831390-64831409 | None:intergenic | 30.0% | |
| TTGCCTTAATAAGTGTATCT+TGG | + | chr8.4:64831231-64831250 | MS.gene58272:intron | 30.0% | |
| TTTCAATGTGGGATTCATAA+CGG | - | chr8.4:64830537-64830556 | None:intergenic | 30.0% | |
| TTTCTCTTCTGTAAGGTTAT+CGG | - | chr8.4:64831900-64831919 | None:intergenic | 30.0% | |
| ! | CATTTTGTCAAATCCCAATT+TGG | + | chr8.4:64829879-64829898 | MS.gene58272:CDS | 30.0% |
| ! | GAATTGGATTAGAGATAGTA+AGG | + | chr8.4:64829700-64829719 | MS.gene58272:CDS | 30.0% |
| ! | GTGAATCAGATAATTTTAGG+AGG | - | chr8.4:64831153-64831172 | None:intergenic | 30.0% |
| ! | TATTATCTTCTGATAATGCC+TGG | - | chr8.4:64831036-64831055 | None:intergenic | 30.0% |
| !! | ACAAGCTTGCCTTTAAAATT+TGG | + | chr8.4:64831571-64831590 | MS.gene58272:intron | 30.0% |
| !! | CGGTTTTATAAGACTAAGTT+TGG | + | chr8.4:64830702-64830721 | MS.gene58272:intron | 30.0% |
| !! | GAATCAGATAATTTTAGGAG+GGG | - | chr8.4:64831151-64831170 | None:intergenic | 30.0% |
| !! | TCTTGACCATTGATTTAGAT+AGG | - | chr8.4:64831629-64831648 | None:intergenic | 30.0% |
| !! | TGTCTTCAGAATCACTTTTA+AGG | - | chr8.4:64831279-64831298 | None:intergenic | 30.0% |
| AAAAGGAAGACATTTCAGTC+CGG | - | chr8.4:64832222-64832241 | None:intergenic | 35.0% | |
| AACCGTTAACAAACCGTTAT+TGG | - | chr8.4:64832128-64832147 | None:intergenic | 35.0% | |
| AAGGAATAACAAAAGACGCA+AGG | - | chr8.4:64830105-64830124 | None:intergenic | 35.0% | |
| AAGGTTACCAGACATATTGA+TGG | - | chr8.4:64831535-64831554 | None:intergenic | 35.0% | |
| ACGGTAAAAATCATGTTTGG+AGG | - | chr8.4:64831387-64831406 | None:intergenic | 35.0% | |
| ATATAAGCTCCCAAAGTCTT+AGG | - | chr8.4:64831998-64832017 | None:intergenic | 35.0% | |
| CATCTACTTTCTCTTCTGTA+AGG | - | chr8.4:64831907-64831926 | None:intergenic | 35.0% | |
| GTGAATGTATCATCCACTTT+GGG | + | chr8.4:64831181-64831200 | MS.gene58272:CDS | 35.0% | |
| GTTAACAATGCAGGGATTAT+TGG | + | chr8.4:64830418-64830437 | MS.gene58272:CDS | 35.0% | |
| TGAATGTATCATCCACTTTG+GGG | + | chr8.4:64831182-64831201 | MS.gene58272:CDS | 35.0% | |
| TGACACAATTTATCCTTTCC+AGG | + | chr8.4:64831015-64831034 | MS.gene58272:intron | 35.0% | |
| TGACGTCCTATCTAAATCAA+TGG | + | chr8.4:64831620-64831639 | MS.gene58272:intron | 35.0% | |
| TGTCTTTCATCAACTAGATG+TGG | + | chr8.4:64829827-64829846 | MS.gene58272:CDS | 35.0% | |
| TGTGAATGTATCATCCACTT+TGG | + | chr8.4:64831180-64831199 | MS.gene58272:CDS | 35.0% | |
| TTTGACAAAATGTGCAAGAG+AGG | - | chr8.4:64829871-64829890 | None:intergenic | 35.0% | |
| ! | AATAGTGGAGAATGACTGTT+GGG | + | chr8.4:64831662-64831681 | MS.gene58272:intron | 35.0% |
| ! | CATAGTGGAACCAGAATTAA+TGG | - | chr8.4:64830885-64830904 | None:intergenic | 35.0% |
| ! | GGTCTTATCTCTTTCAATGT+GGG | - | chr8.4:64830548-64830567 | None:intergenic | 35.0% |
| ! | TAATAGTGGAGAATGACTGT+TGG | + | chr8.4:64831661-64831680 | MS.gene58272:intron | 35.0% |
| ! | TTTTCGCATTTACGGTAGTT+GGG | + | chr8.4:64829926-64829945 | MS.gene58272:intron | 35.0% |
| ! | TTTTTCGCATTTACGGTAGT+TGG | + | chr8.4:64829925-64829944 | MS.gene58272:intron | 35.0% |
| !! | TGCCAATAACGGTTTGTTAA+CGG | + | chr8.4:64832123-64832142 | MS.gene58272:CDS | 35.0% |
| !!! | CCTTCATGTTTTGATCCATT+GGG | + | chr8.4:64829628-64829647 | MS.gene58272:intron | 35.0% |
| !!! | TCCTTCATGTTTTGATCCAT+TGG | + | chr8.4:64829627-64829646 | MS.gene58272:intron | 35.0% |
| AAAGACGCAAGGTAAAGCTA+AGG | - | chr8.4:64830094-64830113 | None:intergenic | 40.0% | |
| AAGACGCAAGGTAAAGCTAA+GGG | - | chr8.4:64830093-64830112 | None:intergenic | 40.0% | |
| AAGCTAGCACTAATTCCCAA+TGG | + | chr8.4:64832172-64832191 | MS.gene58272:CDS | 40.0% | |
| ACAGTCAGTATGTTACAAGC+CGG | + | chr8.4:64830682-64830701 | MS.gene58272:intron | 40.0% | |
| ACATCTGCATATTTACCCCA+CGG | - | chr8.4:64830489-64830508 | None:intergenic | 40.0% | |
| ACTGCAAGAGATGAGAAAAG+AGG | + | chr8.4:64829756-64829775 | MS.gene58272:CDS | 40.0% | |
| ACTGGAGCAAACAAAGGAAT+TGG | + | chr8.4:64829684-64829703 | MS.gene58272:CDS | 40.0% | |
| CAACTCCAGAGTATACCAAA+TGG | + | chr8.4:64831848-64831867 | MS.gene58272:intron | 40.0% | |
| CACACACTAAAACGAAATCC+TGG | + | chr8.4:64831480-64831499 | MS.gene58272:intron | 40.0% | |
| CATTGCAGGTTAACAATGCA+GGG | + | chr8.4:64830410-64830429 | MS.gene58272:intron | 40.0% | |
| CCCAATGGATCAAAACATGA+AGG | - | chr8.4:64829631-64829650 | None:intergenic | 40.0% | |
| CGATAGTCAATATCGACCAT+TGG | - | chr8.4:64831723-64831742 | None:intergenic | 40.0% | |
| GAAAAGAGGTCTTCATGCTT+TGG | + | chr8.4:64829770-64829789 | MS.gene58272:CDS | 40.0% | |
| GTGTATCTTGGATTCCCTTA+TGG | + | chr8.4:64831243-64831262 | MS.gene58272:intron | 40.0% | |
| TCATTGCAGGTTAACAATGC+AGG | + | chr8.4:64830409-64830428 | MS.gene58272:intron | 40.0% | |
| TCCAGAGTATACCAAATGGA+TGG | + | chr8.4:64831852-64831871 | MS.gene58272:intron | 40.0% | |
| TGCATCAATAGTGTTTGTCC+TGG | + | chr8.4:64832079-64832098 | MS.gene58272:CDS | 40.0% | |
| TTGGAAACACTCAAAGCTTC+TGG | + | chr8.4:64829789-64829808 | MS.gene58272:CDS | 40.0% | |
| ! | AAATTTGGAAACGGATTCGC+AGG | + | chr8.4:64831586-64831605 | MS.gene58272:intron | 40.0% |
| ! | AATTTGGAAACGGATTCGCA+GGG | + | chr8.4:64831587-64831606 | MS.gene58272:intron | 40.0% |
| ! | CTTCTGGCAAGTTCTTTTAC+CGG | + | chr8.4:64832200-64832219 | MS.gene58272:CDS | 40.0% |
| ! | GGGTCTTATCTCTTTCAATG+TGG | - | chr8.4:64830549-64830568 | None:intergenic | 40.0% |
| ! | TCTTCTGATAATGCCTGGAA+AGG | - | chr8.4:64831031-64831050 | None:intergenic | 40.0% |
| !! | AAGCTTTTTGGCCATCCATT+TGG | - | chr8.4:64831866-64831885 | None:intergenic | 40.0% |
| !! | GGTTTGTTAACGGTTGAAGA+AGG | + | chr8.4:64832133-64832152 | MS.gene58272:CDS | 40.0% |
| !! | GTTTTGATCCATTGGGTGTT+GGG | + | chr8.4:64829635-64829654 | MS.gene58272:intron | 40.0% |
| !!! | TGTTTTGATCCATTGGGTGT+TGG | + | chr8.4:64829634-64829653 | MS.gene58272:intron | 40.0% |
| AAACTCAACCCAACACCCAA+TGG | - | chr8.4:64829646-64829665 | None:intergenic | 45.0% | |
| AATCTGGCTATCTACAACCG+TGG | + | chr8.4:64830469-64830488 | MS.gene58272:CDS | 45.0% | |
| AGCTTCAGCTGGAATCAAAG+TGG | + | chr8.4:64829728-64829747 | MS.gene58272:CDS | 45.0% | |
| ATCTGGCTATCTACAACCGT+GGG | + | chr8.4:64830470-64830489 | MS.gene58272:CDS | 45.0% | |
| ATTCCCAATGGTAGTCCTTC+TGG | + | chr8.4:64832184-64832203 | MS.gene58272:CDS | 45.0% | |
| CGGTAAAAGAACTTGCCAGA+AGG | - | chr8.4:64832202-64832221 | None:intergenic | 45.0% | |
| CTCGTCTCATTGATCTGAGT+TGG | - | chr8.4:64830638-64830657 | None:intergenic | 45.0% | |
| GACTGTTGGGAGAAACTATG+TGG | + | chr8.4:64831675-64831694 | MS.gene58272:intron | 45.0% | |
| GCAGTACTCATCTCACAAGT+CGG | + | chr8.4:64830591-64830610 | MS.gene58272:intron | 45.0% | |
| GCCATCCATTTGGTATACTC+TGG | - | chr8.4:64831856-64831875 | None:intergenic | 45.0% | |
| GCTTTCGCCATCAATATGTC+TGG | + | chr8.4:64831525-64831544 | MS.gene58272:intron | 45.0% | |
| GGATGGCCAAAAAGCTTCTT+CGG | + | chr8.4:64831869-64831888 | MS.gene58272:CDS | 45.0% | |
| TGAGTTTGTCAGGTATGCAG+TGG | + | chr8.4:64829659-64829678 | MS.gene58272:intron | 45.0% | |
| TTGCCAGAAGGACTACCATT+GGG | - | chr8.4:64832190-64832209 | None:intergenic | 45.0% | |
| ! | GCTTCACCGAAGAAGCTTTT+TGG | - | chr8.4:64831878-64831897 | None:intergenic | 45.0% |
| ! | TAATGGACGCGAGAAACCAA+TGG | + | chr8.4:64831704-64831723 | MS.gene58272:intron | 45.0% |
| ! | TTGTGAGATGAGTACTGCTC+TGG | - | chr8.4:64830589-64830608 | None:intergenic | 45.0% |
| !! | AATGGCTGGCCTAAGACTTT+GGG | + | chr8.4:64831986-64832005 | MS.gene58272:CDS | 45.0% |
| !! | CGAGTCGTCTTAACTTGTTC+AGG | + | chr8.4:64830027-64830046 | MS.gene58272:intron | 45.0% |
| !! | AAATTTAATAAAAATTTAGA+GGG | - | chr8.4:64830827-64830846 | None:intergenic | 5.0% |
| !! | TAAATTTAATAAAAATTTAG+AGG | - | chr8.4:64830828-64830847 | None:intergenic | 5.0% |
| !!! | AAAATATTCTTATATTTTAA+TGG | - | chr8.4:64829573-64829592 | None:intergenic | 5.0% |
| CTTGCCAGAAGGACTACCAT+TGG | - | chr8.4:64832191-64832210 | None:intergenic | 50.0% | |
| GTGGTGACTGGAGCAAACAA+AGG | + | chr8.4:64829678-64829697 | MS.gene58272:CDS | 50.0% | |
| TACCTCTAACTGCCCCAAAG+TGG | - | chr8.4:64831197-64831216 | None:intergenic | 50.0% | |
| TCTGGCTATCTACAACCGTG+GGG | + | chr8.4:64830471-64830490 | MS.gene58272:CDS | 50.0% | |
| ! | GTAAGGCAGTTAGCTTCAGC+TGG | + | chr8.4:64829717-64829736 | MS.gene58272:CDS | 50.0% |
| !! | ATCCACTTTGGGGCAGTTAG+AGG | + | chr8.4:64831192-64831211 | MS.gene58272:CDS | 50.0% |
| !! | CAATGGCTGGCCTAAGACTT+TGG | + | chr8.4:64831985-64832004 | MS.gene58272:CDS | 50.0% |
| !! | GGTGTTGGGTTGAGTTTGTC+AGG | + | chr8.4:64829649-64829668 | MS.gene58272:intron | 50.0% |
| GTCAGGTATGCAGTGGTGAC+TGG | + | chr8.4:64829666-64829685 | MS.gene58272:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 64829502 | 64832243 | 64829502 | ID=MS.gene58272 |
| chr8.4 | mRNA | 64829502 | 64832243 | 64829502 | ID=MS.gene58272.t1;Parent=MS.gene58272 |
| chr8.4 | exon | 64829502 | 64829521 | 64829502 | ID=MS.gene58272.t1.exon1;Parent=MS.gene58272.t1 |
| chr8.4 | CDS | 64829502 | 64829521 | 64829502 | ID=cds.MS.gene58272.t1;Parent=MS.gene58272.t1 |
| chr8.4 | exon | 64829671 | 64829917 | 64829671 | ID=MS.gene58272.t1.exon2;Parent=MS.gene58272.t1 |
| chr8.4 | CDS | 64829671 | 64829917 | 64829671 | ID=cds.MS.gene58272.t1;Parent=MS.gene58272.t1 |
| chr8.4 | exon | 64830418 | 64830492 | 64830418 | ID=MS.gene58272.t1.exon3;Parent=MS.gene58272.t1 |
| chr8.4 | CDS | 64830418 | 64830492 | 64830418 | ID=cds.MS.gene58272.t1;Parent=MS.gene58272.t1 |
| chr8.4 | exon | 64831037 | 64831213 | 64831037 | ID=MS.gene58272.t1.exon4;Parent=MS.gene58272.t1 |
| chr8.4 | CDS | 64831037 | 64831213 | 64831037 | ID=cds.MS.gene58272.t1;Parent=MS.gene58272.t1 |
| chr8.4 | exon | 64831857 | 64832243 | 64831857 | ID=MS.gene58272.t1.exon5;Parent=MS.gene58272.t1 |
| chr8.4 | CDS | 64831857 | 64832243 | 64831857 | ID=cds.MS.gene58272.t1;Parent=MS.gene58272.t1 |
| Gene Sequence |
| Protein sequence |
