Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019535.t1 | XP_003627602.1 | 87.6 | 298 | 37 | 0 | 1 | 298 | 1 | 298 | 7.70E-146 | 526.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019535.t1 | Q9M2E2 | 57.5 | 301 | 120 | 5 | 1 | 298 | 1 | 296 | 9.4e-92 | 338.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019535.t1 | G7LBU0 | 87.6 | 298 | 37 | 0 | 1 | 298 | 1 | 298 | 5.6e-146 | 526.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019535.t1 | MTR_8g031990 | 87.248 | 298 | 38 | 0 | 1 | 298 | 1 | 298 | 0.0 | 549 |
MS.gene019535.t1 | MTR_8g032010 | 87.584 | 298 | 37 | 0 | 1 | 298 | 1 | 298 | 0.0 | 546 |
MS.gene019535.t1 | MTR_8g032000 | 82.550 | 298 | 52 | 0 | 1 | 298 | 1 | 298 | 0.0 | 518 |
MS.gene019535.t1 | MTR_8g032020 | 83.893 | 298 | 46 | 2 | 2 | 298 | 4 | 300 | 0.0 | 516 |
MS.gene019535.t1 | MTR_8g031980 | 70.307 | 293 | 87 | 0 | 6 | 298 | 6 | 298 | 2.12e-154 | 433 |
MS.gene019535.t1 | MTR_8g031960 | 71.034 | 290 | 82 | 2 | 7 | 295 | 8 | 296 | 9.05e-151 | 424 |
MS.gene019535.t1 | MTR_8g031940 | 65.552 | 299 | 102 | 1 | 1 | 298 | 1 | 299 | 4.46e-144 | 407 |
MS.gene019535.t1 | MTR_7g076660 | 57.383 | 298 | 115 | 2 | 1 | 298 | 1 | 286 | 7.13e-126 | 360 |
MS.gene019535.t1 | MTR_7g076655 | 56.711 | 298 | 117 | 2 | 1 | 298 | 1 | 286 | 2.78e-124 | 357 |
MS.gene019535.t1 | MTR_7g076660 | 57.338 | 293 | 113 | 2 | 6 | 298 | 7 | 287 | 5.61e-124 | 356 |
MS.gene019535.t1 | MTR_8g031900 | 54.027 | 298 | 132 | 2 | 1 | 298 | 1 | 293 | 6.11e-118 | 341 |
MS.gene019535.t1 | MTR_8g031910 | 55.853 | 299 | 119 | 3 | 1 | 298 | 1 | 287 | 6.83e-118 | 340 |
MS.gene019535.t1 | MTR_8g031630 | 57.000 | 300 | 124 | 4 | 1 | 298 | 1 | 297 | 6.31e-116 | 336 |
MS.gene019535.t1 | MTR_8g031600 | 56.333 | 300 | 127 | 2 | 1 | 298 | 1 | 298 | 2.61e-115 | 334 |
MS.gene019535.t1 | MTR_8g031610 | 56.849 | 292 | 122 | 3 | 8 | 298 | 6 | 294 | 1.25e-114 | 332 |
MS.gene019535.t1 | MTR_7g076660 | 56.410 | 273 | 107 | 2 | 26 | 298 | 2 | 262 | 1.30e-112 | 326 |
MS.gene019535.t1 | MTR_7g076665 | 54.949 | 293 | 127 | 3 | 7 | 298 | 7 | 295 | 3.56e-111 | 323 |
MS.gene019535.t1 | MTR_8g031650 | 57.045 | 291 | 120 | 4 | 10 | 298 | 104 | 391 | 1.57e-110 | 325 |
MS.gene019535.t1 | MTR_8g031650 | 57.282 | 103 | 42 | 2 | 169 | 269 | 1 | 103 | 8.61e-36 | 132 |
MS.gene019535.t1 | MTR_8g031650 | 57.045 | 291 | 120 | 4 | 10 | 298 | 270 | 557 | 1.63e-108 | 326 |
MS.gene019535.t1 | MTR_8g031650 | 56.827 | 271 | 113 | 3 | 1 | 269 | 1 | 269 | 3.75e-102 | 310 |
MS.gene019535.t1 | MTR_5g062280 | 50.671 | 298 | 144 | 2 | 1 | 298 | 1 | 295 | 2.38e-103 | 304 |
MS.gene019535.t1 | MTR_8g032030 | 81.034 | 174 | 32 | 1 | 1 | 173 | 1 | 174 | 3.75e-96 | 283 |
MS.gene019535.t1 | MTR_3g079320 | 46.644 | 298 | 153 | 3 | 6 | 298 | 10 | 306 | 4.59e-91 | 273 |
MS.gene019535.t1 | MTR_8g031850 | 44.631 | 298 | 122 | 3 | 1 | 298 | 1 | 255 | 3.00e-88 | 264 |
MS.gene019535.t1 | MTR_7g106800 | 47.782 | 293 | 93 | 5 | 7 | 294 | 9 | 246 | 4.05e-80 | 244 |
MS.gene019535.t1 | MTR_3g098470 | 40.461 | 304 | 143 | 7 | 5 | 296 | 33 | 310 | 2.91e-68 | 215 |
MS.gene019535.t1 | MTR_5g083430 | 54.651 | 172 | 78 | 0 | 127 | 298 | 13 | 184 | 5.68e-68 | 210 |
MS.gene019535.t1 | MTR_1g031180 | 38.487 | 304 | 149 | 7 | 5 | 296 | 38 | 315 | 7.57e-61 | 196 |
MS.gene019535.t1 | MTR_8g096060 | 35.197 | 304 | 156 | 7 | 5 | 296 | 35 | 309 | 5.54e-55 | 181 |
MS.gene019535.t1 | MTR_4g087460 | 35.161 | 310 | 160 | 8 | 5 | 298 | 20 | 304 | 5.81e-54 | 178 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019535.t1 | AT3G61220 | 57.475 | 301 | 120 | 5 | 1 | 298 | 1 | 296 | 1.10e-121 | 350 |
MS.gene019535.t1 | AT3G61220 | 57.966 | 295 | 116 | 5 | 7 | 298 | 14 | 303 | 1.41e-120 | 348 |
MS.gene019535.t1 | AT3G61220 | 57.966 | 295 | 116 | 5 | 7 | 298 | 38 | 327 | 5.40e-120 | 347 |
MS.gene019535.t1 | AT1G01800 | 54.667 | 300 | 129 | 5 | 1 | 298 | 1 | 295 | 1.02e-116 | 338 |
MS.gene019535.t1 | AT2G24190 | 54.817 | 301 | 128 | 5 | 1 | 298 | 1 | 296 | 3.40e-115 | 334 |
MS.gene019535.t1 | AT2G24190 | 55.254 | 295 | 124 | 5 | 7 | 298 | 12 | 301 | 3.70e-114 | 332 |
MS.gene019535.t1 | AT1G01800 | 53.110 | 209 | 95 | 2 | 90 | 298 | 55 | 260 | 1.55e-79 | 242 |
MS.gene019535.t1 | AT5G51030 | 36.634 | 303 | 154 | 7 | 6 | 296 | 37 | 313 | 1.09e-60 | 196 |
MS.gene019535.t1 | AT3G59710 | 35.172 | 290 | 158 | 7 | 6 | 291 | 18 | 281 | 4.76e-52 | 172 |
MS.gene019535.t1 | AT5G61830 | 36.842 | 304 | 155 | 7 | 6 | 296 | 36 | 315 | 5.25e-52 | 173 |
MS.gene019535.t1 | AT5G61830 | 36.842 | 304 | 155 | 7 | 6 | 296 | 36 | 315 | 5.25e-52 | 173 |
MS.gene019535.t1 | AT3G59710 | 35.172 | 290 | 158 | 7 | 6 | 291 | 28 | 291 | 6.11e-52 | 172 |
MS.gene019535.t1 | AT3G59710 | 35.172 | 290 | 158 | 7 | 6 | 291 | 47 | 310 | 2.07e-51 | 172 |
Find 57 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCATTGAAATAAATTATTA+TGG | 0.237007 | 8.1:+70389424 | MS.gene019535:CDS |
GAGAATAGATGAAGTGATAA+AGG | 0.304473 | 8.1:+70395032 | MS.gene019535:CDS |
GAATTGGATTTGAGATATTA+AGG | 0.307514 | 8.1:+70387975 | MS.gene019535:CDS |
CAAGTTTGCCAAATTGAGAT+TGG | 0.342990 | 8.1:-70388162 | None:intergenic |
ACAGGATCAAACAAAGGAAT+TGG | 0.374893 | 8.1:+70387959 | MS.gene019535:CDS |
GGAAGCAGTGCTAACCTAAC+AGG | 0.391029 | 8.1:-70395273 | None:intergenic |
CTTCCCAATGGTAGTCCATC+TGG | 0.395808 | 8.1:+70395291 | MS.gene019535:CDS |
GAAAAGAGGTCTTCATGCTT+TGG | 0.397535 | 8.1:+70388045 | MS.gene019535:CDS |
CTTCAGCACTCGTTACAAAC+GGG | 0.402250 | 8.1:+70388956 | MS.gene019535:CDS |
GTGTAGGCAGCAGCATATCT+AGG | 0.439970 | 8.1:-70395102 | None:intergenic |
AAGGTGCTGCTCATCCTGTT+AGG | 0.448829 | 8.1:+70395259 | MS.gene019535:CDS |
TGCATCAATTGTGTGTGTCC+TGG | 0.450557 | 8.1:+70395186 | MS.gene019535:CDS |
ACAGATATAACTGCTAATAC+TGG | 0.459482 | 8.1:+70395219 | MS.gene019535:CDS |
ACACAATTGATGCAGAAGTT+AGG | 0.460671 | 8.1:-70395177 | None:intergenic |
TTTAGGTATGCAGTGGTGAC+AGG | 0.462333 | 8.1:+70387941 | MS.gene019535:intron |
ATAATTGAAGGAGGGGAAGA+AGG | 0.467120 | 8.1:-70389468 | None:intergenic |
TTAAGGCAGTTAGCTTCAGC+TGG | 0.471025 | 8.1:+70387992 | MS.gene019535:CDS |
CATCTGGCCTCTTCTATGTT+CGG | 0.471793 | 8.1:+70395307 | MS.gene019535:CDS |
GTCAATGTATCATCAGGATT+GGG | 0.471976 | 8.1:+70389508 | MS.gene019535:CDS |
AGTCAATGTATCATCAGGAT+TGG | 0.473356 | 8.1:+70389507 | MS.gene019535:CDS |
ACTTCAGCACTCGTTACAAA+CGG | 0.482058 | 8.1:+70388955 | MS.gene019535:CDS |
AGAGTAGTCAATGTATCATC+AGG | 0.484821 | 8.1:+70389502 | MS.gene019535:CDS |
ATTTGGCAAACTTGATATGC+TGG | 0.485598 | 8.1:+70388171 | MS.gene019535:CDS |
GAGTGGGCTAAAGGTGTCTT+CGG | 0.491982 | 8.1:+70394985 | MS.gene019535:CDS |
TTGGTGAATCAGATAATTGA+AGG | 0.495258 | 8.1:-70389480 | None:intergenic |
GAGGCCAGATGGACTACCAT+TGG | 0.500283 | 8.1:-70395295 | None:intergenic |
GTTAACAATGCTGGGATTGG+CGG | 0.504625 | 8.1:+70388904 | MS.gene019535:CDS |
CAGGTTAACAATGCTGGGAT+TGG | 0.506992 | 8.1:+70388901 | MS.gene019535:intron |
GATGATACATTGACTACTCT+TGG | 0.507830 | 8.1:-70389499 | None:intergenic |
ATTGTGCAGGTTAACAATGC+TGG | 0.509851 | 8.1:+70388895 | MS.gene019535:intron |
ATTTGTTACTACCTTTCTCT+CGG | 0.512650 | 8.1:-70387797 | None:intergenic |
ATCAGGATTGGGCAAGATAG+AGG | 0.513958 | 8.1:+70389519 | MS.gene019535:CDS |
GGTTTCTTTACAGTAGAAGA+AGG | 0.515734 | 8.1:+70395240 | MS.gene019535:CDS |
GAAGGGTCCTTAGAAAGAAA+AGG | 0.520604 | 8.1:+70395075 | MS.gene019535:CDS |
CTCTTCATTTAGGTATGCAG+TGG | 0.531024 | 8.1:+70387934 | MS.gene019535:intron |
ATATGGAAGAACCGAGAGAA+AGG | 0.532039 | 8.1:+70387786 | None:intergenic |
AGGCCAGATGGACTACCATT+GGG | 0.540042 | 8.1:-70395294 | None:intergenic |
GAATCAGATAATTGAAGGAG+GGG | 0.548419 | 8.1:-70389475 | None:intergenic |
TGTCTTTCATCAACTAGATG+TGG | 0.551632 | 8.1:+70388102 | MS.gene019535:CDS |
TGAATCAGATAATTGAAGGA+GGG | 0.564567 | 8.1:-70389476 | None:intergenic |
TTGTGCAGGTTAACAATGCT+GGG | 0.573954 | 8.1:+70388896 | MS.gene019535:intron |
AGAAGCTTTAGCAACAGTGT+AGG | 0.575020 | 8.1:-70395118 | None:intergenic |
ACATCAAGAGATGAGAAAAG+AGG | 0.576041 | 8.1:+70388031 | MS.gene019535:CDS |
CGAACATAGAAGAGGCCAGA+TGG | 0.576343 | 8.1:-70395306 | None:intergenic |
GTATCAAATGAGTGGGCTAA+AGG | 0.579326 | 8.1:+70394976 | MS.gene019535:CDS |
ATCAGTGTGTATCAAATGAG+TGG | 0.595416 | 8.1:+70394968 | MS.gene019535:intron |
AGGTTAGCACTGCTTCCCAA+TGG | 0.599058 | 8.1:+70395279 | MS.gene019535:CDS |
TATCTGATGATGAATTGAGA+AGG | 0.601830 | 8.1:+70389368 | MS.gene019535:CDS |
ATCTGATGATGAATTGAGAA+GGG | 0.606653 | 8.1:+70389369 | MS.gene019535:CDS |
TCAGTGTGTATCAAATGAGT+GGG | 0.608435 | 8.1:+70394969 | MS.gene019535:intron |
GTGAATCAGATAATTGAAGG+AGG | 0.618406 | 8.1:-70389477 | None:intergenic |
ATATCTGTTCTGACATAACC+AGG | 0.635571 | 8.1:-70395204 | None:intergenic |
GGTCCTTAGAAAGAAAAGGT+TGG | 0.636847 | 8.1:+70395079 | MS.gene019535:CDS |
CTTCGTTCCGAACATAGAAG+AGG | 0.637658 | 8.1:-70395314 | None:intergenic |
TTCAGCACTCGTTACAAACG+GGG | 0.638318 | 8.1:+70388957 | MS.gene019535:CDS |
AGCTTCAGCTGGAATCAAAG+TGG | 0.664366 | 8.1:+70388003 | MS.gene019535:CDS |
GTGGTGACAGGATCAAACAA+AGG | 0.683284 | 8.1:+70387953 | MS.gene019535:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 70387788 | 70395350 | 70387788 | ID=MS.gene019535 |
chr8.1 | mRNA | 70387788 | 70395350 | 70387788 | ID=MS.gene019535.t1;Parent=MS.gene019535 |
chr8.1 | exon | 70387788 | 70387807 | 70387788 | ID=MS.gene019535.t1.exon1;Parent=MS.gene019535.t1 |
chr8.1 | CDS | 70387788 | 70387807 | 70387788 | ID=cds.MS.gene019535.t1;Parent=MS.gene019535.t1 |
chr8.1 | exon | 70387946 | 70388192 | 70387946 | ID=MS.gene019535.t1.exon2;Parent=MS.gene019535.t1 |
chr8.1 | CDS | 70387946 | 70388192 | 70387946 | ID=cds.MS.gene019535.t1;Parent=MS.gene019535.t1 |
chr8.1 | exon | 70388904 | 70388978 | 70388904 | ID=MS.gene019535.t1.exon3;Parent=MS.gene019535.t1 |
chr8.1 | CDS | 70388904 | 70388978 | 70388904 | ID=cds.MS.gene019535.t1;Parent=MS.gene019535.t1 |
chr8.1 | exon | 70389364 | 70389540 | 70389364 | ID=MS.gene019535.t1.exon4;Parent=MS.gene019535.t1 |
chr8.1 | CDS | 70389364 | 70389540 | 70389364 | ID=cds.MS.gene019535.t1;Parent=MS.gene019535.t1 |
chr8.1 | exon | 70394973 | 70395350 | 70394973 | ID=MS.gene019535.t1.exon5;Parent=MS.gene019535.t1 |
chr8.1 | CDS | 70394973 | 70395350 | 70394973 | ID=cds.MS.gene019535.t1;Parent=MS.gene019535.t1 |
Gene Sequence |
Protein sequence |