Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57563.t1 | AET02074.1 | 94.5 | 291 | 16 | 0 | 7 | 297 | 8 | 298 | 1.70E-148 | 535.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57563.t1 | Q9M2E2 | 55.5 | 301 | 126 | 5 | 1 | 298 | 1 | 296 | 4.2e-84 | 312.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57563.t1 | G7J258 | 94.5 | 291 | 16 | 0 | 7 | 297 | 8 | 298 | 1.2e-148 | 535.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57563.t1 | MTR_8g031960 | 94.539 | 293 | 15 | 1 | 7 | 298 | 8 | 300 | 0.0 | 565 |
| MS.gene57563.t1 | MTR_8g031980 | 90.604 | 298 | 28 | 0 | 1 | 298 | 1 | 298 | 0.0 | 553 |
| MS.gene57563.t1 | MTR_8g031940 | 77.926 | 299 | 65 | 1 | 1 | 298 | 1 | 299 | 3.73e-171 | 476 |
| MS.gene57563.t1 | MTR_8g031990 | 69.799 | 298 | 90 | 0 | 1 | 298 | 1 | 298 | 8.73e-155 | 434 |
| MS.gene57563.t1 | MTR_8g032020 | 70.470 | 298 | 87 | 1 | 2 | 298 | 3 | 300 | 4.16e-154 | 432 |
| MS.gene57563.t1 | MTR_8g032000 | 69.128 | 298 | 92 | 0 | 1 | 298 | 1 | 298 | 1.73e-153 | 431 |
| MS.gene57563.t1 | MTR_8g032010 | 69.128 | 298 | 92 | 0 | 1 | 298 | 1 | 298 | 1.93e-152 | 428 |
| MS.gene57563.t1 | MTR_7g076660 | 57.860 | 299 | 112 | 2 | 1 | 298 | 1 | 286 | 3.40e-123 | 354 |
| MS.gene57563.t1 | MTR_7g076660 | 58.163 | 294 | 109 | 2 | 6 | 298 | 7 | 287 | 4.64e-122 | 351 |
| MS.gene57563.t1 | MTR_7g076655 | 56.522 | 299 | 116 | 2 | 1 | 298 | 1 | 286 | 2.56e-120 | 347 |
| MS.gene57563.t1 | MTR_8g031910 | 59.197 | 299 | 109 | 4 | 1 | 298 | 1 | 287 | 7.85e-119 | 343 |
| MS.gene57563.t1 | MTR_8g031630 | 55.667 | 300 | 128 | 4 | 1 | 298 | 1 | 297 | 2.89e-114 | 332 |
| MS.gene57563.t1 | MTR_8g031600 | 55.333 | 300 | 130 | 2 | 1 | 298 | 1 | 298 | 1.83e-113 | 330 |
| MS.gene57563.t1 | MTR_8g031610 | 55.932 | 295 | 126 | 3 | 5 | 298 | 3 | 294 | 7.13e-113 | 328 |
| MS.gene57563.t1 | MTR_7g076660 | 57.299 | 274 | 103 | 2 | 26 | 298 | 2 | 262 | 2.18e-111 | 323 |
| MS.gene57563.t1 | MTR_8g031900 | 53.356 | 298 | 134 | 2 | 1 | 298 | 1 | 293 | 1.77e-110 | 322 |
| MS.gene57563.t1 | MTR_8g031650 | 56.357 | 291 | 122 | 4 | 10 | 298 | 104 | 391 | 7.85e-110 | 324 |
| MS.gene57563.t1 | MTR_8g031650 | 57.843 | 102 | 41 | 2 | 170 | 269 | 2 | 103 | 1.18e-35 | 132 |
| MS.gene57563.t1 | MTR_7g076665 | 54.849 | 299 | 130 | 2 | 1 | 298 | 1 | 295 | 2.25e-109 | 319 |
| MS.gene57563.t1 | MTR_5g062280 | 53.846 | 299 | 133 | 3 | 1 | 298 | 1 | 295 | 1.06e-108 | 317 |
| MS.gene57563.t1 | MTR_8g031650 | 56.357 | 291 | 122 | 4 | 10 | 298 | 270 | 557 | 5.36e-108 | 325 |
| MS.gene57563.t1 | MTR_8g031650 | 56.089 | 271 | 115 | 3 | 1 | 269 | 1 | 269 | 1.05e-100 | 306 |
| MS.gene57563.t1 | MTR_3g079320 | 48.161 | 299 | 149 | 3 | 5 | 298 | 9 | 306 | 2.66e-89 | 268 |
| MS.gene57563.t1 | MTR_8g032030 | 74.713 | 174 | 43 | 1 | 1 | 173 | 1 | 174 | 3.52e-86 | 258 |
| MS.gene57563.t1 | MTR_8g031850 | 44.966 | 298 | 121 | 4 | 1 | 298 | 1 | 255 | 1.68e-83 | 252 |
| MS.gene57563.t1 | MTR_7g106800 | 48.148 | 297 | 94 | 4 | 7 | 298 | 9 | 250 | 1.93e-83 | 252 |
| MS.gene57563.t1 | MTR_3g098470 | 40.000 | 305 | 145 | 6 | 4 | 296 | 32 | 310 | 1.03e-68 | 216 |
| MS.gene57563.t1 | MTR_5g083430 | 54.651 | 172 | 78 | 0 | 127 | 298 | 13 | 184 | 1.45e-64 | 201 |
| MS.gene57563.t1 | MTR_1g031180 | 38.361 | 305 | 150 | 6 | 4 | 296 | 37 | 315 | 1.77e-61 | 197 |
| MS.gene57563.t1 | MTR_8g096060 | 36.364 | 308 | 149 | 7 | 4 | 296 | 34 | 309 | 2.32e-55 | 182 |
| MS.gene57563.t1 | MTR_4g087460 | 38.206 | 301 | 145 | 9 | 6 | 290 | 21 | 296 | 1.54e-54 | 179 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57563.t1 | AT1G01800 | 57.143 | 294 | 121 | 4 | 7 | 298 | 5 | 295 | 1.20e-114 | 332 |
| MS.gene57563.t1 | AT3G61220 | 55.482 | 301 | 126 | 5 | 1 | 298 | 1 | 296 | 8.24e-114 | 330 |
| MS.gene57563.t1 | AT3G61220 | 56.271 | 295 | 121 | 5 | 7 | 298 | 14 | 303 | 1.11e-112 | 328 |
| MS.gene57563.t1 | AT3G61220 | 56.271 | 295 | 121 | 5 | 7 | 298 | 38 | 327 | 2.42e-112 | 328 |
| MS.gene57563.t1 | AT2G24190 | 53.947 | 304 | 126 | 6 | 1 | 298 | 1 | 296 | 1.82e-109 | 319 |
| MS.gene57563.t1 | AT2G24190 | 54.698 | 298 | 121 | 6 | 7 | 298 | 12 | 301 | 3.37e-108 | 317 |
| MS.gene57563.t1 | AT1G01800 | 53.110 | 209 | 95 | 2 | 90 | 298 | 55 | 260 | 8.43e-74 | 227 |
| MS.gene57563.t1 | AT5G51030 | 38.361 | 305 | 150 | 6 | 4 | 296 | 35 | 313 | 1.87e-66 | 210 |
| MS.gene57563.t1 | AT3G59710 | 39.792 | 289 | 144 | 7 | 6 | 290 | 18 | 280 | 2.47e-62 | 199 |
| MS.gene57563.t1 | AT3G59710 | 39.792 | 289 | 144 | 7 | 6 | 290 | 28 | 290 | 3.60e-62 | 199 |
| MS.gene57563.t1 | AT3G59710 | 39.792 | 289 | 144 | 7 | 6 | 290 | 47 | 309 | 7.58e-62 | 199 |
| MS.gene57563.t1 | AT5G61830 | 38.235 | 306 | 152 | 6 | 4 | 296 | 34 | 315 | 7.06e-60 | 194 |
| MS.gene57563.t1 | AT5G61830 | 38.235 | 306 | 152 | 6 | 4 | 296 | 34 | 315 | 7.06e-60 | 194 |
Find 56 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGGCAAACTTGATATTC+TGG | 0.218733 | 8.3:+62654128 | MS.gene57563:CDS |
| TGTTTGCAAATAAATTATTA+TGG | 0.282681 | 8.3:+62656461 | MS.gene57563:CDS |
| TGTAATTAATGACAAAGATT+TGG | 0.329021 | 8.3:+62656229 | MS.gene57563:CDS |
| AGCATCACCAAAGATTTCTT+TGG | 0.329916 | 8.3:-62657280 | None:intergenic |
| ATCAGACGATGAAAGGAAAA+AGG | 0.341584 | 8.3:+62656406 | MS.gene57563:CDS |
| TTGGTGAATCAGATAACTTT+AGG | 0.350628 | 8.3:-62656517 | None:intergenic |
| ATCCACTACAGGGAAGTTAA+AGG | 0.358802 | 8.3:+62656556 | MS.gene57563:CDS |
| CATCCACTTTCTCTTCAGTT+AGG | 0.365391 | 8.3:-62657308 | None:intergenic |
| ACAGGATCAAACAAAGGAAT+TGG | 0.374893 | 8.3:+62653916 | MS.gene57563:CDS |
| GAATGGACCAAAGAAATCTT+TGG | 0.376524 | 8.3:+62657273 | MS.gene57563:CDS |
| CTTCCCAATGGAAGTGCATC+TGG | 0.387683 | 8.3:+62657579 | MS.gene57563:CDS |
| AGATTTCAAAGAAGGTTCAT+TGG | 0.391106 | 8.3:+62657353 | MS.gene57563:CDS |
| TATGTTATCACAGATATAAC+TGG | 0.419210 | 8.3:+62657498 | MS.gene57563:CDS |
| CTTCAGTCCTATGATAGAAT+TGG | 0.420152 | 8.3:-62657602 | None:intergenic |
| GTTAACAATGCAGGGATTAG+TGG | 0.432718 | 8.3:+62656203 | MS.gene57563:CDS |
| CATCTGGCCAATTCTATCAT+AGG | 0.435865 | 8.3:+62657595 | MS.gene57563:CDS |
| GAATTGGATTTGAGATAGTA+AGG | 0.438309 | 8.3:+62653932 | MS.gene57563:CDS |
| AGCAAAGGCTGGCCTAAAAC+TGG | 0.443573 | 8.3:+62657378 | MS.gene57563:CDS |
| TACCTTTAACTTCCCTGTAG+TGG | 0.446734 | 8.3:-62656558 | None:intergenic |
| ACAGATATAACTGGCAATAC+TGG | 0.452816 | 8.3:+62657507 | MS.gene57563:CDS |
| TTTGAAACACTCAAAGCCTC+TGG | 0.460145 | 8.3:+62654021 | MS.gene57563:CDS |
| TCCAGGATTGCAGTAGTGAC+AGG | 0.461294 | 8.3:+62653898 | MS.gene57563:intron |
| TTGGCCAGATGCACTTCCAT+TGG | 0.462445 | 8.3:-62657583 | None:intergenic |
| GTGAATGTATCATCCACTAC+AGG | 0.468640 | 8.3:+62656545 | MS.gene57563:CDS |
| TGGCCAGATGCACTTCCATT+GGG | 0.478632 | 8.3:-62657582 | None:intergenic |
| GATGATACATTCACAATCCT+TGG | 0.480577 | 8.3:-62656536 | None:intergenic |
| TCAATGCAGGTTAACAATGC+AGG | 0.485830 | 8.3:+62656194 | MS.gene57563:intron |
| GTAAGGCAATTAGCTTCAGC+TGG | 0.490726 | 8.3:+62653949 | MS.gene57563:CDS |
| ATAACATAGTACTAATCAAA+AGG | 0.493573 | 8.3:-62657631 | None:intergenic |
| TAACCTAACTGAAGAGAAAG+TGG | 0.501755 | 8.3:+62657305 | MS.gene57563:CDS |
| ATACTATTGATGCATAAAGT+AGG | 0.503498 | 8.3:-62657465 | None:intergenic |
| AGGCATTATCAGACGATGAA+AGG | 0.506982 | 8.3:+62656399 | MS.gene57563:intron |
| ATTAGCTTCAGCTGGAATCA+AGG | 0.525651 | 8.3:+62653957 | MS.gene57563:CDS |
| TGCATCAATAGTATTTGCCC+TGG | 0.551292 | 8.3:+62657474 | MS.gene57563:CDS |
| CAATGCAGGTTAACAATGCA+GGG | 0.554639 | 8.3:+62656195 | MS.gene57563:intron |
| GCAGCTTTAGACAAGACATA+AGG | 0.557043 | 8.3:-62657405 | None:intergenic |
| ACAGCAAGAGATGAGAAAAG+AGG | 0.563297 | 8.3:+62653988 | MS.gene57563:CDS |
| GTGAATCAGATAACTTTAGG+AGG | 0.565611 | 8.3:-62656514 | None:intergenic |
| TGTATTTCATCAACTAGATG+TGG | 0.570787 | 8.3:+62654059 | MS.gene57563:CDS |
| GGTCTCTTAACTGCTGAAGA+AGG | 0.578507 | 8.3:+62657528 | MS.gene57563:CDS |
| GTTCATTGGAAAGCAAAGGC+TGG | 0.581607 | 8.3:+62657367 | MS.gene57563:CDS |
| AGTGTCTCAAACATATGAGT+TGG | 0.584257 | 8.3:+62656430 | MS.gene57563:CDS |
| AAGCTAGCATTGCTTCCCAA+TGG | 0.591803 | 8.3:+62657567 | MS.gene57563:CDS |
| TGAATCAGATAACTTTAGGA+GGG | 0.593989 | 8.3:-62656513 | None:intergenic |
| AGATGGGACAAACTGCAGAA+AGG | 0.596749 | 8.3:+62653586 | None:intergenic |
| ATATCTGTGATAACATAACC+AGG | 0.599146 | 8.3:-62657492 | None:intergenic |
| GAAGGTTCATTGGAAAGCAA+AGG | 0.604153 | 8.3:+62657363 | MS.gene57563:CDS |
| GAATCAGATAACTTTAGGAG+GGG | 0.624352 | 8.3:-62656512 | None:intergenic |
| TGAATGTATCATCCACTACA+GGG | 0.652351 | 8.3:+62656546 | MS.gene57563:CDS |
| AAAGGCTGGCCTAAAACTGG+TGG | 0.657155 | 8.3:+62657381 | MS.gene57563:CDS |
| TGTGGCTAATGCTGCAAGTG+TGG | 0.661469 | 8.3:+62654077 | MS.gene57563:CDS |
| AACAAAATCAGATAAACCAG+AGG | 0.663643 | 8.3:-62654037 | None:intergenic |
| TAAAGTTATCTGATTCACCA+AGG | 0.666656 | 8.3:+62656519 | MS.gene57563:CDS |
| GTAGTGACAGGATCAAACAA+AGG | 0.701245 | 8.3:+62653910 | MS.gene57563:CDS |
| AGCTTCAGCTGGAATCAAGG+TGG | 0.722149 | 8.3:+62653960 | MS.gene57563:CDS |
| TATCTGTGATAACATAACCA+GGG | 0.729976 | 8.3:-62657491 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAAATATTATAATATT+AGG | - | chr8.3:62655892-62655911 | None:intergenic | 0.0% |
| !! | AATATTAAATGATTACATAA+AGG | + | chr8.3:62654615-62654634 | MS.gene57563:intron | 10.0% |
| !! | CAAAAAAAATTAATTGAATA+AGG | + | chr8.3:62656929-62656948 | MS.gene57563:intron | 10.0% |
| !! | TGGATAATAAAATAAATAAA+AGG | - | chr8.3:62655857-62655876 | None:intergenic | 10.0% |
| !!! | CTTATTCAATTAATTTTTTT+TGG | - | chr8.3:62656931-62656950 | None:intergenic | 10.0% |
| !! | AAAAAAATGATGTAATTGTT+TGG | + | chr8.3:62656350-62656369 | MS.gene57563:intron | 15.0% |
| !! | AAAAAATGATGTAATTGTTT+GGG | + | chr8.3:62656351-62656370 | MS.gene57563:intron | 15.0% |
| !! | CAAAGTTTCATTTAAAAAAA+TGG | - | chr8.3:62654179-62654198 | None:intergenic | 15.0% |
| !! | TGAAATAAATAAAACGATAA+AGG | - | chr8.3:62655716-62655735 | None:intergenic | 15.0% |
| !! | TGTTTGCAAATAAATTATTA+TGG | + | chr8.3:62656461-62656480 | MS.gene57563:CDS | 15.0% |
| !! | TTAATTATAGTTATATGTGA+CGG | - | chr8.3:62655556-62655575 | None:intergenic | 15.0% |
| !! | TTTCATTTAAAAAAATGGAA+AGG | - | chr8.3:62654174-62654193 | None:intergenic | 15.0% |
| !!! | AATCTTTAAAACATCAAATA+AGG | - | chr8.3:62654350-62654369 | None:intergenic | 15.0% |
| !!! | GTTTTATTAGAACTTTATTT+TGG | + | chr8.3:62654286-62654305 | MS.gene57563:intron | 15.0% |
| !!! | TATATTTTTATTTAACTTCC+AGG | + | chr8.3:62655943-62655962 | MS.gene57563:intron | 15.0% |
| !!! | TCAATTAATTTTTTTTGGAT+TGG | - | chr8.3:62656926-62656945 | None:intergenic | 15.0% |
| !!! | TGTAAAAAAGTGTATATTAA+GGG | + | chr8.3:62656312-62656331 | MS.gene57563:intron | 15.0% |
| !!! | TTAATATACACTTTTTTACA+GGG | - | chr8.3:62656312-62656331 | None:intergenic | 15.0% |
| !! | AATAAGTTCCACAATTAAAA+TGG | - | chr8.3:62657161-62657180 | None:intergenic | 20.0% |
| !! | AATTTATTCTTCAATTGTAG+AGG | + | chr8.3:62656794-62656813 | MS.gene57563:intron | 20.0% |
| !! | AGGAATAAAAAAAAGTAACA+TGG | - | chr8.3:62654217-62654236 | None:intergenic | 20.0% |
| !! | ATGTATAAACAACAAAACTA+AGG | - | chr8.3:62654237-62654256 | None:intergenic | 20.0% |
| !! | ATTCTGGTAACATAAAAATT+TGG | + | chr8.3:62654144-62654163 | MS.gene57563:intron | 20.0% |
| !! | TAATGATTTACTTTCTATCT+AGG | - | chr8.3:62656775-62656794 | None:intergenic | 20.0% |
| !! | TGAAATAAATAAAGCAGTAA+AGG | - | chr8.3:62655809-62655828 | None:intergenic | 20.0% |
| !! | TGAAATAAATAAAGCGATAA+AGG | - | chr8.3:62655667-62655686 | None:intergenic | 20.0% |
| !! | TGTAATTAATGACAAAGATT+TGG | + | chr8.3:62656229-62656248 | MS.gene57563:CDS | 20.0% |
| !!! | AAAGTTTTAGAATTCATTCT+TGG | + | chr8.3:62653639-62653658 | MS.gene57563:intron | 20.0% |
| !!! | AATTTTTCCATCAATATCTT+AGG | + | chr8.3:62656746-62656765 | MS.gene57563:intron | 20.0% |
| !!! | ATCCTTTTAAAAATTATTCC+TGG | - | chr8.3:62655964-62655983 | None:intergenic | 20.0% |
| !!! | CTGTAAAAAAGTGTATATTA+AGG | + | chr8.3:62656311-62656330 | MS.gene57563:intron | 20.0% |
| !!! | CTTAATATACACTTTTTTAC+AGG | - | chr8.3:62656313-62656332 | None:intergenic | 20.0% |
| !!! | TATTTTAAATACAAACTCTC+AGG | - | chr8.3:62655166-62655185 | None:intergenic | 20.0% |
| !!! | TCCTGATATATTAATTTGAA+GGG | + | chr8.3:62656114-62656133 | MS.gene57563:intron | 20.0% |
| !!! | TGCTCATAATGTTAATTTTT+TGG | + | chr8.3:62656715-62656734 | MS.gene57563:intron | 20.0% |
| !!! | TTCCAGGAATAATTTTTAAA+AGG | + | chr8.3:62655959-62655978 | MS.gene57563:intron | 20.0% |
| !!! | TTCCTGATATATTAATTTGA+AGG | + | chr8.3:62656113-62656132 | MS.gene57563:intron | 20.0% |
| !!! | TTTTATAGTCTCTTAGTATT+TGG | + | chr8.3:62657190-62657209 | MS.gene57563:intron | 20.0% |
| !!! | TTTTTAGAAGATTTCAAAGA+AGG | + | chr8.3:62657345-62657364 | MS.gene57563:CDS | 20.0% |
| ! | AATAATTATCCAGAACTTTC+TGG | + | chr8.3:62655640-62655659 | MS.gene57563:intron | 25.0% |
| ! | ACTTTGTTCTTCTTTCTTTA+AGG | - | chr8.3:62654676-62654695 | None:intergenic | 25.0% |
| ! | AGAAAAAAAAATATCTCACG+TGG | - | chr8.3:62655216-62655235 | None:intergenic | 25.0% |
| ! | AGATCTAGTTACAATTTGTA+TGG | - | chr8.3:62655272-62655291 | None:intergenic | 25.0% |
| ! | ATAAATACAAGCATATAGCA+AGG | + | chr8.3:62655005-62655024 | MS.gene57563:intron | 25.0% |
| ! | ATACTATTGATGCATAAAGT+AGG | - | chr8.3:62657468-62657487 | None:intergenic | 25.0% |
| ! | ATATATGCTCAAGAAAATCT+TGG | - | chr8.3:62655928-62655947 | None:intergenic | 25.0% |
| ! | ATGTTCTTAACATAAGAAGA+AGG | + | chr8.3:62654441-62654460 | MS.gene57563:intron | 25.0% |
| ! | CATTGCATTCAAAAATGAAT+TGG | + | chr8.3:62654639-62654658 | MS.gene57563:intron | 25.0% |
| ! | CATTTAAAAAAATGGAAAGG+AGG | - | chr8.3:62654171-62654190 | None:intergenic | 25.0% |
| ! | CTAGTGTTAATCAATTCTTA+AGG | + | chr8.3:62656595-62656614 | MS.gene57563:intron | 25.0% |
| ! | CTATATGCTTGTATTTATAG+AGG | - | chr8.3:62655003-62655022 | None:intergenic | 25.0% |
| ! | CTGAAATAAATAAGCAGTAA+AGG | - | chr8.3:62655763-62655782 | None:intergenic | 25.0% |
| ! | CTTAAGAATTGATTAACACT+AGG | - | chr8.3:62656597-62656616 | None:intergenic | 25.0% |
| ! | TATGTTATCACAGATATAAC+TGG | + | chr8.3:62657498-62657517 | MS.gene57563:CDS | 25.0% |
| ! | TCCAGAGAATAAAAAATGAA+TGG | + | chr8.3:62657256-62657275 | MS.gene57563:intron | 25.0% |
| ! | TCCCTTCAAATTAATATATC+AGG | - | chr8.3:62656118-62656137 | None:intergenic | 25.0% |
| ! | TGAAACTACAAATATGGATA+AGG | + | chr8.3:62654734-62654753 | MS.gene57563:intron | 25.0% |
| ! | TTAGAATTCATTCTTGGTAA+TGG | + | chr8.3:62653645-62653664 | MS.gene57563:intron | 25.0% |
| !! | AAGAATGCAAGATTTCATTT+TGG | - | chr8.3:62656696-62656715 | None:intergenic | 25.0% |
| !! | GATTTTGTCAAATCTCAATT+TGG | + | chr8.3:62654111-62654130 | MS.gene57563:CDS | 25.0% |
| !! | TAAGAAAATTTGTTCAATGC+AGG | + | chr8.3:62656181-62656200 | MS.gene57563:intron | 25.0% |
| !! | TATATATAACCAGAGTTTTC+TGG | + | chr8.3:62655689-62655708 | MS.gene57563:intron | 25.0% |
| !!! | AAGGTATTTTGTCAATTTGA+AGG | + | chr8.3:62656948-62656967 | MS.gene57563:intron | 25.0% |
| !!! | AGTTCTGGATAATTATTAAG+AGG | - | chr8.3:62655637-62655656 | None:intergenic | 25.0% |
| !!! | CAATTCATTTTTGAATGCAA+TGG | - | chr8.3:62654641-62654660 | None:intergenic | 25.0% |
| !!! | GTATTTAATTTGACCTTTTC+AGG | + | chr8.3:62656379-62656398 | MS.gene57563:intron | 25.0% |
| !!! | TCCATTCATTTTTTATTCTC+TGG | - | chr8.3:62657260-62657279 | None:intergenic | 25.0% |
| !!! | TGGCTTTAACTTATTGAATA+AGG | + | chr8.3:62657210-62657229 | MS.gene57563:intron | 25.0% |
| AACAAAATCAGATAAACCAG+AGG | - | chr8.3:62654040-62654059 | None:intergenic | 30.0% | |
| AACTAGATCTCAAGTCTATT+AGG | + | chr8.3:62655282-62655301 | MS.gene57563:intron | 30.0% | |
| AAGTTCCACAATTAAAATGG+TGG | - | chr8.3:62657158-62657177 | None:intergenic | 30.0% | |
| AGATTTCAAAGAAGGTTCAT+TGG | + | chr8.3:62657353-62657372 | MS.gene57563:CDS | 30.0% | |
| AGGAAAACACCTATAGTTTA+TGG | - | chr8.3:62656289-62656308 | None:intergenic | 30.0% | |
| AGTAAGTGTCCATAAACTAT+AGG | + | chr8.3:62656277-62656296 | MS.gene57563:intron | 30.0% | |
| ATAAAAGGACTAGAAAGTTC+TGG | - | chr8.3:62655842-62655861 | None:intergenic | 30.0% | |
| ATATCTGTGATAACATAACC+AGG | - | chr8.3:62657495-62657514 | None:intergenic | 30.0% | |
| ATCAAGCAAAAGGACATAAT+TGG | + | chr8.3:62654507-62654526 | MS.gene57563:intron | 30.0% | |
| ATTCTTCAATTGTAGAGGAA+TGG | + | chr8.3:62656799-62656818 | MS.gene57563:intron | 30.0% | |
| ATTTGGCAAACTTGATATTC+TGG | + | chr8.3:62654128-62654147 | MS.gene57563:CDS | 30.0% | |
| CTGGATAATTATTAAGAGGT+AGG | - | chr8.3:62655633-62655652 | None:intergenic | 30.0% | |
| GTCTTTACTATGTATTGTTG+AGG | + | chr8.3:62654317-62654336 | MS.gene57563:intron | 30.0% | |
| TAAAGTTATCTGATTCACCA+AGG | + | chr8.3:62656519-62656538 | MS.gene57563:CDS | 30.0% | |
| TAATGTCACTAGAACAAAGT+AGG | + | chr8.3:62656631-62656650 | MS.gene57563:intron | 30.0% | |
| TAGGTTACCTAAGATATTGA+TGG | - | chr8.3:62656756-62656775 | None:intergenic | 30.0% | |
| TATCAAAGCAATCAAGCAAA+AGG | + | chr8.3:62654497-62654516 | MS.gene57563:intron | 30.0% | |
| TATCTGTGATAACATAACCA+GGG | - | chr8.3:62657494-62657513 | None:intergenic | 30.0% | |
| TCTAGTTACAATTTGTATGG+TGG | - | chr8.3:62655269-62655288 | None:intergenic | 30.0% | |
| TGTATTTCATCAACTAGATG+TGG | + | chr8.3:62654059-62654078 | MS.gene57563:CDS | 30.0% | |
| TTAGGCTTAATAGTTTGAGA+TGG | + | chr8.3:62655300-62655319 | MS.gene57563:intron | 30.0% | |
| TTCTCTCATCTCTTAATTTC+TGG | + | chr8.3:62655530-62655549 | MS.gene57563:intron | 30.0% | |
| TTCTGGTGAAACTACAAATA+TGG | + | chr8.3:62654728-62654747 | MS.gene57563:intron | 30.0% | |
| TTGGTGAATCAGATAACTTT+AGG | - | chr8.3:62656520-62656539 | None:intergenic | 30.0% | |
| TTTGCACTTACTTTATCAAC+CGG | + | chr8.3:62657061-62657080 | MS.gene57563:intron | 30.0% | |
| TTTGCTTGATTGCTTTGATA+AGG | - | chr8.3:62654497-62654516 | None:intergenic | 30.0% | |
| ! | AAGGACATAATTGGACTTTT+TGG | + | chr8.3:62654516-62654535 | MS.gene57563:intron | 30.0% |
| ! | GAATTGGATTTGAGATAGTA+AGG | + | chr8.3:62653932-62653951 | MS.gene57563:CDS | 30.0% |
| ! | GTTAATTATCCAGAGTTTTC+TGG | + | chr8.3:62655736-62655755 | MS.gene57563:intron | 30.0% |
| ! | GTTATATATCCAGAGTTTTC+TGG | + | chr8.3:62655782-62655801 | MS.gene57563:intron | 30.0% |
| ! | TGAATCAGATAACTTTAGGA+GGG | - | chr8.3:62656516-62656535 | None:intergenic | 30.0% |
| ! | TTTTATTATCCAGAGTTCTC+TGG | + | chr8.3:62655865-62655884 | MS.gene57563:intron | 30.0% |
| !! | GTTGATAATACAGAGTGTAA+CGG | + | chr8.3:62655364-62655383 | MS.gene57563:intron | 30.0% |
| !!! | ATATACACTTTTTTACAGGG+AGG | - | chr8.3:62656309-62656328 | None:intergenic | 30.0% |
| !!! | TAGAACCACCATTTTAATTG+TGG | + | chr8.3:62657150-62657169 | MS.gene57563:intron | 30.0% |
| AATAAACGTCACAAGAAAGG+GGG | - | chr8.3:62655999-62656018 | None:intergenic | 35.0% | |
| ACAGATATAACTGGCAATAC+TGG | + | chr8.3:62657507-62657526 | MS.gene57563:CDS | 35.0% | |
| ACAGGATCAAACAAAGGAAT+TGG | + | chr8.3:62653916-62653935 | MS.gene57563:CDS | 35.0% | |
| AGAACACAAGAGATTTATCC+TGG | - | chr8.3:62655505-62655524 | None:intergenic | 35.0% | |
| AGCAATAAACGTCACAAGAA+AGG | - | chr8.3:62656002-62656021 | None:intergenic | 35.0% | |
| AGCATCACCAAAGATTTCTT+TGG | - | chr8.3:62657283-62657302 | None:intergenic | 35.0% | |
| AGTGTCTCAAACATATGAGT+TGG | + | chr8.3:62656430-62656449 | MS.gene57563:CDS | 35.0% | |
| AGTTACAATTTGTATGGTGG+TGG | - | chr8.3:62655266-62655285 | None:intergenic | 35.0% | |
| AGTTTATGGACACTTACTCT+AGG | - | chr8.3:62656275-62656294 | None:intergenic | 35.0% | |
| ATCAGACGATGAAAGGAAAA+AGG | + | chr8.3:62656406-62656425 | MS.gene57563:CDS | 35.0% | |
| ATTCAGAAGTTTCTGATAGC+AGG | + | chr8.3:62655420-62655439 | MS.gene57563:intron | 35.0% | |
| CAATAAACGTCACAAGAAAG+GGG | - | chr8.3:62656000-62656019 | None:intergenic | 35.0% | |
| CTCACCAAAAGAAGATACTT+GGG | + | chr8.3:62654571-62654590 | MS.gene57563:intron | 35.0% | |
| CTTCAGTCCTATGATAGAAT+TGG | - | chr8.3:62657605-62657624 | None:intergenic | 35.0% | |
| CTTGGGATACATGACATAAA+TGG | + | chr8.3:62654588-62654607 | MS.gene57563:intron | 35.0% | |
| GAATGGACCAAAGAAATCTT+TGG | + | chr8.3:62657273-62657292 | MS.gene57563:CDS | 35.0% | |
| GAATGTTCTTGAGAACATTC+TGG | + | chr8.3:62654711-62654730 | MS.gene57563:intron | 35.0% | |
| GATGATACATTCACAATCCT+TGG | - | chr8.3:62656539-62656558 | None:intergenic | 35.0% | |
| GCAATAAACGTCACAAGAAA+GGG | - | chr8.3:62656001-62656020 | None:intergenic | 35.0% | |
| GTGAATCAGATAACTTTAGG+AGG | - | chr8.3:62656517-62656536 | None:intergenic | 35.0% | |
| GTGTTACAGTGATGACATAA+CGG | - | chr8.3:62657094-62657113 | None:intergenic | 35.0% | |
| GTTACAATTTGTATGGTGGT+GGG | - | chr8.3:62655265-62655284 | None:intergenic | 35.0% | |
| GTTTATGGACACTTACTCTA+GGG | - | chr8.3:62656274-62656293 | None:intergenic | 35.0% | |
| TAACCTAACTGAAGAGAAAG+TGG | + | chr8.3:62657305-62657324 | MS.gene57563:CDS | 35.0% | |
| TATTCACGTGAATGAGAGAA+TGG | - | chr8.3:62655062-62655081 | None:intergenic | 35.0% | |
| TCTCACCAAAAGAAGATACT+TGG | + | chr8.3:62654570-62654589 | MS.gene57563:intron | 35.0% | |
| TCTTCAGAACATTCTTCACT+TGG | + | chr8.3:62654851-62654870 | MS.gene57563:intron | 35.0% | |
| TGAATGTATCATCCACTACA+GGG | + | chr8.3:62656546-62656565 | MS.gene57563:CDS | 35.0% | |
| ! | AACAAAAAGCAAGAGCACAT+GGG | + | chr8.3:62654909-62654928 | MS.gene57563:intron | 35.0% |
| ! | AACTTGGAATGTCTTTTGCT+TGG | + | chr8.3:62656658-62656677 | MS.gene57563:intron | 35.0% |
| ! | ACTTGGAATGTCTTTTGCTT+GGG | + | chr8.3:62656659-62656678 | MS.gene57563:intron | 35.0% |
| ! | GAATCAGATAACTTTAGGAG+GGG | - | chr8.3:62656515-62656534 | None:intergenic | 35.0% |
| ! | GTATCCCAAGTATCTTCTTT+TGG | - | chr8.3:62654578-62654597 | None:intergenic | 35.0% |
| !! | ATTAATTTTCCAGAGTGCTC+TGG | + | chr8.3:62655580-62655599 | MS.gene57563:intron | 35.0% |
| !! | GTCAATATTCTAAAACCACG+CGG | + | chr8.3:62653863-62653882 | MS.gene57563:intron | 35.0% |
| !! | TCAATATTCTAAAACCACGC+GGG | + | chr8.3:62653864-62653883 | MS.gene57563:intron | 35.0% |
| ACAGCAAGAGATGAGAAAAG+AGG | + | chr8.3:62653988-62654007 | MS.gene57563:CDS | 40.0% | |
| AGCTGTGCATGAGTTGTAAT+TGG | - | chr8.3:62654780-62654799 | None:intergenic | 40.0% | |
| AGGCATTATCAGACGATGAA+AGG | + | chr8.3:62656399-62656418 | MS.gene57563:intron | 40.0% | |
| AGTAAAGGACCAGAAAACTC+TGG | - | chr8.3:62655748-62655767 | None:intergenic | 40.0% | |
| ATAAACGTCACAAGAAAGGG+GGG | - | chr8.3:62655998-62656017 | None:intergenic | 40.0% | |
| ATAATCTCACACGTAGTGTG+GGG | + | chr8.3:62655455-62655474 | MS.gene57563:intron | 40.0% | |
| ATATTAGGACCAGAGAACTC+TGG | - | chr8.3:62655877-62655896 | None:intergenic | 40.0% | |
| ATCCACTACAGGGAAGTTAA+AGG | + | chr8.3:62656556-62656575 | MS.gene57563:CDS | 40.0% | |
| CAATGCAGGTTAACAATGCA+GGG | + | chr8.3:62656195-62656214 | MS.gene57563:intron | 40.0% | |
| CATCCACTTTCTCTTCAGTT+AGG | - | chr8.3:62657311-62657330 | None:intergenic | 40.0% | |
| CATCTGGCCAATTCTATCAT+AGG | + | chr8.3:62657595-62657614 | MS.gene57563:CDS | 40.0% | |
| CTGATAGCAGGATACTATAG+TGG | + | chr8.3:62655432-62655451 | MS.gene57563:intron | 40.0% | |
| GAACAAAGTAGGAGCAAACT+TGG | + | chr8.3:62656642-62656661 | MS.gene57563:intron | 40.0% | |
| GAAGGTTCATTGGAAAGCAA+AGG | + | chr8.3:62657363-62657382 | MS.gene57563:CDS | 40.0% | |
| GATAAAGGACCAGAAAACTC+TGG | - | chr8.3:62655701-62655720 | None:intergenic | 40.0% | |
| GATAAAGGACCAGAAAGTTC+TGG | - | chr8.3:62655652-62655671 | None:intergenic | 40.0% | |
| GATAATCTCACACGTAGTGT+GGG | + | chr8.3:62655454-62655473 | MS.gene57563:intron | 40.0% | |
| GTAGTGACAGGATCAAACAA+AGG | + | chr8.3:62653910-62653929 | MS.gene57563:CDS | 40.0% | |
| GTGAATGTATCATCCACTAC+AGG | + | chr8.3:62656545-62656564 | MS.gene57563:CDS | 40.0% | |
| GTTAACAATGCAGGGATTAG+TGG | + | chr8.3:62656203-62656222 | MS.gene57563:CDS | 40.0% | |
| TCAATGCAGGTTAACAATGC+AGG | + | chr8.3:62656194-62656213 | MS.gene57563:intron | 40.0% | |
| TCTCAATTGTGATCGCATTG+CGG | + | chr8.3:62653731-62653750 | MS.gene57563:intron | 40.0% | |
| TCTGTATTATCAACCTCAGC+AGG | - | chr8.3:62655358-62655377 | None:intergenic | 40.0% | |
| TGCATCAATAGTATTTGCCC+TGG | + | chr8.3:62657474-62657493 | MS.gene57563:CDS | 40.0% | |
| ! | ACATAAGGACCACCAGTTTT+AGG | - | chr8.3:62657393-62657412 | None:intergenic | 40.0% |
| ! | ATGACATAACGGCTTTTGAC+CGG | - | chr8.3:62657083-62657102 | None:intergenic | 40.0% |
| ! | ATTAGCTTCAGCTGGAATCA+AGG | + | chr8.3:62653957-62653976 | MS.gene57563:CDS | 40.0% |
| ! | CAACAAAAAGCAAGAGCACA+TGG | + | chr8.3:62654908-62654927 | MS.gene57563:intron | 40.0% |
| ! | TACCTTTAACTTCCCTGTAG+TGG | - | chr8.3:62656561-62656580 | None:intergenic | 40.0% |
| ! | TCGTCTGATAATGCCTGAAA+AGG | - | chr8.3:62656395-62656414 | None:intergenic | 40.0% |
| ! | TTTGAAACACTCAAAGCCTC+TGG | + | chr8.3:62654021-62654040 | MS.gene57563:CDS | 40.0% |
| !! | ACTGAAGTGTCTTCCTTTTG+AGG | + | chr8.3:62657618-62657637 | MS.gene57563:CDS | 40.0% |
| !! | GCAGCTTTAGACAAGACATA+AGG | - | chr8.3:62657408-62657427 | None:intergenic | 40.0% |
| AGAATAGTAGAAGCCTGCTG+AGG | + | chr8.3:62655342-62655361 | MS.gene57563:intron | 45.0% | |
| AGCTGTATTACAACCTCACG+TGG | + | chr8.3:62654796-62654815 | MS.gene57563:intron | 45.0% | |
| GCTGTATTACAACCTCACGT+GGG | + | chr8.3:62654797-62654816 | MS.gene57563:intron | 45.0% | |
| GGATAATCTCACACGTAGTG+TGG | + | chr8.3:62655453-62655472 | MS.gene57563:intron | 45.0% | |
| GGTCTCTTAACTGCTGAAGA+AGG | + | chr8.3:62657528-62657547 | MS.gene57563:CDS | 45.0% | |
| GTTCATTGGAAAGCAAAGGC+TGG | + | chr8.3:62657367-62657386 | MS.gene57563:CDS | 45.0% | |
| ! | GTAAGGCAATTAGCTTCAGC+TGG | + | chr8.3:62653949-62653968 | MS.gene57563:CDS | 45.0% |
| ! | TTTATCCTGGTTCGCCTAAC+CGG | - | chr8.3:62655492-62655511 | None:intergenic | 45.0% |
| !! | ATTTGTATGGTGGTGGGTGT+TGG | - | chr8.3:62655259-62655278 | None:intergenic | 45.0% |
| !! | GTGGTGGGTGTTGGTAAAAA+TGG | - | chr8.3:62655250-62655269 | None:intergenic | 45.0% |
| !! | TTTTAAGGACCAGAGCACTC+TGG | - | chr8.3:62655592-62655611 | None:intergenic | 45.0% |
| !!! | ATTATTTAATTTTAGTTTTA+AGG | - | chr8.3:62655607-62655626 | None:intergenic | 5.0% |
| AGCTTCAGCTGGAATCAAGG+TGG | + | chr8.3:62653960-62653979 | MS.gene57563:CDS | 50.0% | |
| TCCAGGATTGCAGTAGTGAC+AGG | + | chr8.3:62653898-62653917 | MS.gene57563:intron | 50.0% | |
| TCCTGTCACTACTGCAATCC+TGG | - | chr8.3:62653902-62653921 | None:intergenic | 50.0% | |
| TGTGGCTAATGCTGCAAGTG+TGG | + | chr8.3:62654077-62654096 | MS.gene57563:CDS | 50.0% | |
| !! | AAAGGCTGGCCTAAAACTGG+TGG | + | chr8.3:62657381-62657400 | MS.gene57563:CDS | 50.0% |
| !! | AGCAAAGGCTGGCCTAAAAC+TGG | + | chr8.3:62657378-62657397 | MS.gene57563:CDS | 50.0% |
| !! | CAGAGTGTAACGGACTGATC+TGG | + | chr8.3:62655374-62655393 | MS.gene57563:intron | 50.0% |
| CTCACACGTAGTGTGGGGAT+TGG | + | chr8.3:62655460-62655479 | MS.gene57563:intron | 55.0% | |
| GGAAACAAACACAACCCGCG+TGG | - | chr8.3:62653881-62653900 | None:intergenic | 55.0% | |
| ! | CATTTGAGACAGCCCACGTG+AGG | - | chr8.3:62654812-62654831 | None:intergenic | 55.0% |
| ! | CGCGGGTTGTGTTTGTTTCC+AGG | + | chr8.3:62653881-62653900 | MS.gene57563:intron | 55.0% |
| ! | CTCACGTGGGCTGTCTCAAA+TGG | + | chr8.3:62654810-62654829 | MS.gene57563:intron | 55.0% |
| ! | GTGGGCTGTCTCAAATGGCT+AGG | + | chr8.3:62654815-62654834 | MS.gene57563:intron | 55.0% |
| GGGATTGGACGTAGCCGGTT+AGG | + | chr8.3:62655475-62655494 | MS.gene57563:intron | 60.0% | |
| GTGTGGGGATTGGACGTAGC+CGG | + | chr8.3:62655470-62655489 | MS.gene57563:intron | 60.0% | |
| CGTAGCCGGTTAGGCGAACC+AGG | + | chr8.3:62655484-62655503 | MS.gene57563:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 62653588 | 62657638 | 62653588 | ID=MS.gene57563 |
| chr8.3 | mRNA | 62653588 | 62657638 | 62653588 | ID=MS.gene57563.t1;Parent=MS.gene57563 |
| chr8.3 | exon | 62653588 | 62653607 | 62653588 | ID=MS.gene57563.t1.exon1;Parent=MS.gene57563.t1 |
| chr8.3 | CDS | 62653588 | 62653607 | 62653588 | ID=cds.MS.gene57563.t1;Parent=MS.gene57563.t1 |
| chr8.3 | exon | 62653903 | 62654149 | 62653903 | ID=MS.gene57563.t1.exon2;Parent=MS.gene57563.t1 |
| chr8.3 | CDS | 62653903 | 62654149 | 62653903 | ID=cds.MS.gene57563.t1;Parent=MS.gene57563.t1 |
| chr8.3 | exon | 62656203 | 62656277 | 62656203 | ID=MS.gene57563.t1.exon3;Parent=MS.gene57563.t1 |
| chr8.3 | CDS | 62656203 | 62656277 | 62656203 | ID=cds.MS.gene57563.t1;Parent=MS.gene57563.t1 |
| chr8.3 | exon | 62656401 | 62656577 | 62656401 | ID=MS.gene57563.t1.exon4;Parent=MS.gene57563.t1 |
| chr8.3 | CDS | 62656401 | 62656577 | 62656401 | ID=cds.MS.gene57563.t1;Parent=MS.gene57563.t1 |
| chr8.3 | exon | 62657261 | 62657638 | 62657261 | ID=MS.gene57563.t1.exon5;Parent=MS.gene57563.t1 |
| chr8.3 | CDS | 62657261 | 62657638 | 62657261 | ID=cds.MS.gene57563.t1;Parent=MS.gene57563.t1 |
| Gene Sequence |
| Protein sequence |
