Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019540.t1 | RHN39977.1 | 92.3 | 299 | 23 | 0 | 1 | 299 | 51 | 349 | 3.00E-150 | 541.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019540.t1 | Q9M2E2 | 56.4 | 303 | 121 | 6 | 1 | 299 | 1 | 296 | 3.5e-86 | 319.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019540.t1 | G7LBT4 | 92.3 | 299 | 23 | 0 | 1 | 299 | 1 | 299 | 2.2e-150 | 541.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019540.t1 | MTR_8g031940 | 92.308 | 299 | 23 | 0 | 1 | 299 | 1 | 299 | 0.0 | 568 |
| MS.gene019540.t1 | MTR_8g031980 | 81.605 | 299 | 54 | 1 | 1 | 299 | 1 | 298 | 2.85e-180 | 499 |
| MS.gene019540.t1 | MTR_8g031960 | 80.272 | 294 | 56 | 2 | 7 | 299 | 8 | 300 | 1.54e-172 | 479 |
| MS.gene019540.t1 | MTR_8g031990 | 69.231 | 299 | 91 | 1 | 1 | 299 | 1 | 298 | 7.33e-150 | 422 |
| MS.gene019540.t1 | MTR_8g032000 | 67.893 | 299 | 95 | 1 | 1 | 299 | 1 | 298 | 3.07e-148 | 418 |
| MS.gene019540.t1 | MTR_8g032010 | 67.559 | 299 | 96 | 1 | 1 | 299 | 1 | 298 | 6.25e-148 | 417 |
| MS.gene019540.t1 | MTR_8g032020 | 67.559 | 299 | 95 | 2 | 2 | 299 | 3 | 300 | 2.37e-145 | 410 |
| MS.gene019540.t1 | MTR_7g076660 | 59.866 | 299 | 107 | 3 | 1 | 299 | 1 | 286 | 1.50e-126 | 362 |
| MS.gene019540.t1 | MTR_7g076660 | 60.068 | 293 | 104 | 3 | 7 | 299 | 8 | 287 | 8.98e-125 | 358 |
| MS.gene019540.t1 | MTR_7g076655 | 58.863 | 299 | 110 | 3 | 1 | 299 | 1 | 286 | 7.23e-124 | 355 |
| MS.gene019540.t1 | MTR_8g031600 | 58.472 | 301 | 120 | 3 | 1 | 299 | 1 | 298 | 1.81e-120 | 347 |
| MS.gene019540.t1 | MTR_8g031630 | 58.000 | 300 | 122 | 3 | 1 | 299 | 1 | 297 | 3.02e-120 | 347 |
| MS.gene019540.t1 | MTR_8g031610 | 57.770 | 296 | 120 | 4 | 5 | 299 | 3 | 294 | 1.65e-115 | 335 |
| MS.gene019540.t1 | MTR_8g031650 | 57.732 | 291 | 119 | 3 | 10 | 299 | 104 | 391 | 1.51e-113 | 333 |
| MS.gene019540.t1 | MTR_8g031650 | 60.194 | 103 | 40 | 1 | 169 | 270 | 1 | 103 | 2.84e-38 | 139 |
| MS.gene019540.t1 | MTR_7g076660 | 59.124 | 274 | 99 | 3 | 26 | 299 | 2 | 262 | 2.56e-113 | 328 |
| MS.gene019540.t1 | MTR_8g031900 | 54.515 | 299 | 130 | 3 | 1 | 299 | 1 | 293 | 3.67e-113 | 328 |
| MS.gene019540.t1 | MTR_8g031650 | 57.732 | 291 | 119 | 3 | 10 | 299 | 270 | 557 | 1.00e-111 | 334 |
| MS.gene019540.t1 | MTR_8g031650 | 58.672 | 271 | 109 | 2 | 1 | 270 | 1 | 269 | 1.44e-106 | 321 |
| MS.gene019540.t1 | MTR_8g031910 | 57.333 | 300 | 114 | 5 | 1 | 299 | 1 | 287 | 1.28e-111 | 325 |
| MS.gene019540.t1 | MTR_5g062280 | 54.849 | 299 | 131 | 3 | 1 | 299 | 1 | 295 | 1.53e-110 | 322 |
| MS.gene019540.t1 | MTR_7g076665 | 55.000 | 300 | 129 | 3 | 1 | 299 | 1 | 295 | 8.86e-107 | 313 |
| MS.gene019540.t1 | MTR_3g079320 | 51.495 | 301 | 137 | 6 | 5 | 299 | 9 | 306 | 8.70e-92 | 275 |
| MS.gene019540.t1 | MTR_7g106800 | 48.993 | 298 | 91 | 4 | 7 | 299 | 9 | 250 | 3.51e-86 | 259 |
| MS.gene019540.t1 | MTR_8g031850 | 45.819 | 299 | 118 | 4 | 1 | 299 | 1 | 255 | 1.20e-84 | 255 |
| MS.gene019540.t1 | MTR_8g032030 | 74.857 | 175 | 43 | 1 | 1 | 174 | 1 | 175 | 6.66e-84 | 252 |
| MS.gene019540.t1 | MTR_3g098470 | 41.156 | 294 | 135 | 6 | 9 | 291 | 37 | 303 | 4.66e-65 | 207 |
| MS.gene019540.t1 | MTR_5g083430 | 54.335 | 173 | 78 | 1 | 127 | 299 | 13 | 184 | 6.99e-62 | 194 |
| MS.gene019540.t1 | MTR_1g031180 | 40.136 | 294 | 138 | 8 | 9 | 291 | 42 | 308 | 8.41e-57 | 186 |
| MS.gene019540.t1 | MTR_4g087460 | 38.111 | 307 | 148 | 9 | 9 | 299 | 24 | 304 | 5.08e-55 | 181 |
| MS.gene019540.t1 | MTR_8g096060 | 38.776 | 294 | 139 | 9 | 9 | 291 | 39 | 302 | 1.56e-52 | 174 |
| MS.gene019540.t1 | MTR_4g105310 | 27.839 | 273 | 125 | 12 | 9 | 267 | 51 | 265 | 7.78e-13 | 67.8 |
| MS.gene019540.t1 | MTR_4g105310 | 27.839 | 273 | 125 | 12 | 9 | 267 | 51 | 265 | 2.08e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019540.t1 | AT3G61220 | 56.436 | 303 | 121 | 6 | 1 | 299 | 1 | 296 | 1.91e-115 | 335 |
| MS.gene019540.t1 | AT3G61220 | 56.902 | 297 | 117 | 6 | 7 | 299 | 14 | 303 | 5.28e-114 | 331 |
| MS.gene019540.t1 | AT3G61220 | 56.902 | 297 | 117 | 6 | 7 | 299 | 38 | 327 | 1.75e-113 | 331 |
| MS.gene019540.t1 | AT1G01800 | 56.271 | 295 | 123 | 5 | 7 | 299 | 5 | 295 | 3.95e-112 | 326 |
| MS.gene019540.t1 | AT2G24190 | 54.125 | 303 | 128 | 6 | 1 | 299 | 1 | 296 | 3.71e-110 | 321 |
| MS.gene019540.t1 | AT2G24190 | 54.545 | 297 | 124 | 6 | 7 | 299 | 12 | 301 | 1.34e-108 | 317 |
| MS.gene019540.t1 | AT1G01800 | 53.333 | 210 | 94 | 3 | 90 | 299 | 55 | 260 | 1.52e-73 | 227 |
| MS.gene019540.t1 | AT5G51030 | 37.459 | 307 | 154 | 8 | 4 | 299 | 35 | 314 | 9.22e-60 | 193 |
| MS.gene019540.t1 | AT5G61830 | 41.137 | 299 | 131 | 9 | 9 | 291 | 39 | 308 | 1.60e-58 | 190 |
| MS.gene019540.t1 | AT5G61830 | 41.137 | 299 | 131 | 9 | 9 | 291 | 39 | 308 | 1.60e-58 | 190 |
| MS.gene019540.t1 | AT3G59710 | 40.794 | 277 | 134 | 7 | 9 | 282 | 31 | 280 | 1.02e-56 | 185 |
| MS.gene019540.t1 | AT3G59710 | 40.794 | 277 | 134 | 7 | 9 | 282 | 21 | 270 | 1.05e-56 | 185 |
| MS.gene019540.t1 | AT3G59710 | 40.794 | 277 | 134 | 7 | 9 | 282 | 50 | 299 | 1.80e-56 | 185 |
| MS.gene019540.t1 | AT4G09750 | 25.850 | 294 | 153 | 10 | 10 | 292 | 47 | 286 | 1.13e-12 | 67.8 |
| MS.gene019540.t1 | AT5G50130 | 25.172 | 290 | 151 | 8 | 9 | 280 | 39 | 280 | 3.19e-11 | 63.5 |
| MS.gene019540.t1 | AT5G50130 | 25.758 | 264 | 143 | 7 | 9 | 267 | 39 | 254 | 3.33e-11 | 62.8 |
| MS.gene019540.t1 | AT5G50130 | 25.758 | 264 | 143 | 7 | 9 | 267 | 39 | 254 | 8.14e-11 | 62.4 |
| MS.gene019540.t1 | AT5G50130 | 25.086 | 291 | 152 | 8 | 8 | 280 | 5 | 247 | 8.93e-11 | 62.0 |
Find 55 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATATCAAGTTTGCCAAAT+TGG | 0.158459 | 8.1:-70429928 | None:intergenic |
| AACCGTTAACAAACCGTTAT+TGG | 0.210322 | 8.1:-70432509 | None:intergenic |
| AATTCGAGAACTTAATTAAA+AGG | 0.215131 | 8.1:-70432620 | None:intergenic |
| GTTAACAATGCAGGGATTAT+TGG | 0.223601 | 8.1:+70430940 | MS.gene019540:CDS |
| ATTTGGCAAACTTGATATTC+TGG | 0.229964 | 8.1:+70429931 | MS.gene019540:CDS |
| TGTTTGCAAACAAATTATTA+TGG | 0.282681 | 8.1:+70431543 | MS.gene019540:CDS |
| TTTCTCTTCTGTAAGGTTAT+CGG | 0.295049 | 8.1:-70432287 | None:intergenic |
| GATGATACATTCACAATTCT+TGG | 0.302082 | 8.1:-70431618 | None:intergenic |
| TTGGTGAATCAGATAACTTT+AGG | 0.309240 | 8.1:-70431599 | None:intergenic |
| TGACAAAGAGTTACTTAATC+TGG | 0.316097 | 8.1:+70430975 | MS.gene019540:CDS |
| GTGAATGTATCATCCACTTT+GGG | 0.326234 | 8.1:+70431627 | MS.gene019540:CDS |
| ATTCCCAATGGTAGTCCTTC+TGG | 0.337637 | 8.1:+70432568 | MS.gene019540:CDS |
| TTGGAAACACTCAAAGCTTC+TGG | 0.341596 | 8.1:+70429824 | MS.gene019540:CDS |
| AATATCAAGTTTGCCAAATT+GGG | 0.350754 | 8.1:-70429927 | None:intergenic |
| GAATGGCTGGCCTAAGACTT+TGG | 0.362912 | 8.1:+70432369 | MS.gene019540:CDS |
| GCTTCACTGAAGAAGCGTTT+TGG | 0.365226 | 8.1:-70432265 | None:intergenic |
| ATCCACTTTGGGGCAGTTAG+AGG | 0.394092 | 8.1:+70431638 | MS.gene019540:CDS |
| ACTGGAGCAAACAAAGGAAT+TGG | 0.400758 | 8.1:+70429719 | MS.gene019540:CDS |
| TGCCAATAACGGTTTGTTAA+CGG | 0.401780 | 8.1:+70432507 | MS.gene019540:CDS |
| TTTCTAGAAGATTTCAAAGA+AGG | 0.405469 | 8.1:+70432331 | MS.gene019540:CDS |
| GTCAGGTATGCAGTGGTGAC+TGG | 0.406333 | 8.1:+70429701 | MS.gene019540:intron |
| AGATGGGAGAAACTGCAAAA+AGG | 0.413781 | 8.1:+70429535 | None:intergenic |
| GAATTGGATTTGAGATAGTA+AGG | 0.414626 | 8.1:+70429735 | MS.gene019540:CDS |
| ACACTATTGATGCATATAGT+AGG | 0.420593 | 8.1:-70432454 | None:intergenic |
| ATATAAGCTCCCAAAGTCTT+AGG | 0.442458 | 8.1:-70432379 | None:intergenic |
| AATGGCTGGCCTAAGACTTT+GGG | 0.443048 | 8.1:+70432370 | MS.gene019540:CDS |
| TGTGAATGTATCATCCACTT+TGG | 0.452489 | 8.1:+70431626 | MS.gene019540:CDS |
| GGTTCATTAGATTATGAGAA+TGG | 0.471643 | 8.1:+70432352 | MS.gene019540:CDS |
| GCATTGCAGGTTAACAATGC+AGG | 0.492090 | 8.1:+70430931 | MS.gene019540:intron |
| ATCTGGCTATCTACAACCGC+GGG | 0.498190 | 8.1:+70430992 | MS.gene019540:CDS |
| GTAAGGCAGTTAGCTTCAGC+TGG | 0.501587 | 8.1:+70429752 | MS.gene019540:CDS |
| CAAATCCAGAGTATACCAAA+TGG | 0.503662 | 8.1:+70432238 | MS.gene019540:intron |
| CATTAGATTATGAGAATGGC+TGG | 0.506367 | 8.1:+70432356 | MS.gene019540:CDS |
| TGCATCAATAGTGTTTGCCC+TGG | 0.538598 | 8.1:+70432463 | MS.gene019540:CDS |
| GGTTTGTTAACGGTTGAAGA+AGG | 0.550234 | 8.1:+70432517 | MS.gene019540:CDS |
| CATTGCAGGTTAACAATGCA+GGG | 0.563111 | 8.1:+70430932 | MS.gene019540:intron |
| ATGCCAGAAGGACTACCATT+GGG | 0.564515 | 8.1:-70432571 | None:intergenic |
| CATGCCAGAAGGACTACCAT+TGG | 0.565893 | 8.1:-70432572 | None:intergenic |
| ACAGATATAACTGCCAATAA+CGG | 0.574376 | 8.1:+70432496 | MS.gene019540:CDS |
| AAAAGGAAGACATTTCAGTC+CGG | 0.575890 | 8.1:-70432603 | None:intergenic |
| AGCTTCAGCTGGAATAAAAG+TGG | 0.576822 | 8.1:+70429763 | MS.gene019540:CDS |
| AATCTGGCTATCTACAACCG+CGG | 0.582684 | 8.1:+70430991 | MS.gene019540:CDS |
| TACCTCTAACTGCCCCAAAG+TGG | 0.586859 | 8.1:-70431640 | None:intergenic |
| TTTGACAAAATGTGCAAGAG+AGG | 0.592711 | 8.1:-70429903 | None:intergenic |
| ATATCTGTTATAGTATAACC+AGG | 0.600049 | 8.1:-70432481 | None:intergenic |
| CGGTAAAAGAACATGCCAGA+AGG | 0.603986 | 8.1:-70432583 | None:intergenic |
| TCCAGAGTATACCAAATGGA+TGG | 0.614066 | 8.1:+70432242 | MS.gene019540:intron |
| TGAATGTATCATCCACTTTG+GGG | 0.628075 | 8.1:+70431628 | MS.gene019540:CDS |
| GAATCAGATAACTTTAGGAG+TGG | 0.646239 | 8.1:-70431594 | None:intergenic |
| TGAGTTTGTCAGGTATGCAG+TGG | 0.652347 | 8.1:+70429694 | MS.gene019540:intron |
| AAGCTAGCACTAATTCCCAA+TGG | 0.659925 | 8.1:+70432556 | MS.gene019540:CDS |
| GTGGTGACTGGAGCAAACAA+AGG | 0.662474 | 8.1:+70429713 | MS.gene019540:CDS |
| TCAAACATATGAATTAGCTG+AGG | 0.676154 | 8.1:+70431518 | MS.gene019540:CDS |
| TATCTGTTATAGTATAACCA+GGG | 0.717772 | 8.1:-70432480 | None:intergenic |
| TCTGGCTATCTACAACCGCG+GGG | 0.772818 | 8.1:+70430993 | MS.gene019540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAATAGAAATTTAG+AGG | - | chr8.1:70431270-70431289 | None:intergenic | 10.0% |
| !! | AAAATTAATAGAAATTTAGA+GGG | - | chr8.1:70431269-70431288 | None:intergenic | 10.0% |
| !!! | AAATTTTTGAAATATGTATT+TGG | + | chr8.1:70430312-70430331 | MS.gene019540:intron | 10.0% |
| !! | AAAAAGTGAAAAAATGAAAA+TGG | - | chr8.1:70429638-70429657 | None:intergenic | 15.0% |
| !! | AAAAGTGAAAAAATGAAAAT+GGG | - | chr8.1:70429637-70429656 | None:intergenic | 15.0% |
| !! | TCAAAAAATATGTAAAATAG+TGG | + | chr8.1:70430439-70430458 | MS.gene019540:intron | 15.0% |
| !! | CAACTTATAAAAATATGTTC+AGG | - | chr8.1:70431175-70431194 | None:intergenic | 20.0% |
| !! | TAATCAAATAATGACTAACA+AGG | - | chr8.1:70430214-70430233 | None:intergenic | 20.0% |
| !! | TGAAAATATCCATTAAATTC+TGG | + | chr8.1:70431315-70431334 | MS.gene019540:intron | 20.0% |
| !! | TGTTTGCAAACAAATTATTA+TGG | + | chr8.1:70431543-70431562 | MS.gene019540:CDS | 20.0% |
| !!! | AATCTGTTTCCAATTTTTAA+AGG | - | chr8.1:70431986-70432005 | None:intergenic | 20.0% |
| !!! | ATATTTTCATTTCATTATCG+AGG | - | chr8.1:70431304-70431323 | None:intergenic | 20.0% |
| !!! | GTATGATATTTTTGCATTTA+CGG | + | chr8.1:70429953-70429972 | MS.gene019540:intron | 20.0% |
| !!! | TTTTTTGATTATGCTATAAC+TGG | - | chr8.1:70430427-70430446 | None:intergenic | 20.0% |
| ! | AAAATTGCAATCGAAATTGA+AGG | - | chr8.1:70430813-70430832 | None:intergenic | 25.0% |
| ! | AAATATATGATTACAAGCAC+AGG | - | chr8.1:70429580-70429599 | None:intergenic | 25.0% |
| ! | AATATCAAGTTTGCCAAATT+GGG | - | chr8.1:70429930-70429949 | None:intergenic | 25.0% |
| ! | ACACACTAAAATGAAATCTT+GGG | + | chr8.1:70431885-70431904 | MS.gene019540:intron | 25.0% |
| ! | ATATCTGTTATAGTATAACC+AGG | - | chr8.1:70432484-70432503 | None:intergenic | 25.0% |
| ! | GAAATGATTCTCATTGTTAA+TGG | + | chr8.1:70431385-70431404 | MS.gene019540:intron | 25.0% |
| ! | TATCTGTTATAGTATAACCA+GGG | - | chr8.1:70432483-70432502 | None:intergenic | 25.0% |
| ! | TATTGAATGAAATAAGAGCT+TGG | - | chr8.1:70430622-70430641 | None:intergenic | 25.0% |
| ! | TCACTTATTAAGTTATGTTC+AGG | - | chr8.1:70431091-70431110 | None:intergenic | 25.0% |
| !! | GCTATAACTTTAAGTCATTT+TGG | + | chr8.1:70430781-70430800 | MS.gene019540:intron | 25.0% |
| !! | TAAATTTGACTCAAAGTGTT+TGG | - | chr8.1:70431784-70431803 | None:intergenic | 25.0% |
| !! | TTTCTAGAAGATTTCAAAGA+AGG | + | chr8.1:70432331-70432350 | MS.gene019540:CDS | 25.0% |
| !!! | TCTCTTCATAATCACTTTTA+AGG | - | chr8.1:70431726-70431745 | None:intergenic | 25.0% |
| AAAACTACGAGCAATGATAA+AGG | - | chr8.1:70432179-70432198 | None:intergenic | 30.0% | |
| AAAATTGGAAACAGATTAGC+AGG | + | chr8.1:70431989-70432008 | MS.gene019540:intron | 30.0% | |
| AAATTGGAAACAGATTAGCA+GGG | + | chr8.1:70431990-70432009 | MS.gene019540:intron | 30.0% | |
| AAGATGCACTTATTAAAGCA+AGG | - | chr8.1:70431678-70431697 | None:intergenic | 30.0% | |
| AAGTTGCCATTAAATCAACT+TGG | + | chr8.1:70430377-70430396 | MS.gene019540:intron | 30.0% | |
| ACACTATTGATGCATATAGT+AGG | - | chr8.1:70432457-70432476 | None:intergenic | 30.0% | |
| ACAGATATAACTGCCAATAA+CGG | + | chr8.1:70432496-70432515 | MS.gene019540:CDS | 30.0% | |
| AGAGACAATGAAGGTTAAAA+TGG | + | chr8.1:70430642-70430661 | MS.gene019540:intron | 30.0% | |
| ATTGTGCAACCAGAATTTAA+TGG | - | chr8.1:70431327-70431346 | None:intergenic | 30.0% | |
| ATTTGGCAAACTTGATATTC+TGG | + | chr8.1:70429931-70429950 | MS.gene019540:CDS | 30.0% | |
| CACACACTAAAATGAAATCT+TGG | + | chr8.1:70431884-70431903 | MS.gene019540:intron | 30.0% | |
| CATTCAATAAGAGACAATGA+AGG | + | chr8.1:70430633-70430652 | MS.gene019540:intron | 30.0% | |
| GAATATCAAGTTTGCCAAAT+TGG | - | chr8.1:70429931-70429950 | None:intergenic | 30.0% | |
| GATGATACATTCACAATTCT+TGG | - | chr8.1:70431621-70431640 | None:intergenic | 30.0% | |
| GGTTCATTAGATTATGAGAA+TGG | + | chr8.1:70432352-70432371 | MS.gene019540:CDS | 30.0% | |
| GTGAATATGTAATATGATCG+CGG | + | chr8.1:70432136-70432155 | MS.gene019540:intron | 30.0% | |
| TAGTGAATACGTAATATGAG+CGG | + | chr8.1:70432068-70432087 | MS.gene019540:intron | 30.0% | |
| TCAAACATATGAATTAGCTG+AGG | + | chr8.1:70431518-70431537 | MS.gene019540:CDS | 30.0% | |
| TGACAAAGAGTTACTTAATC+TGG | + | chr8.1:70430975-70430994 | MS.gene019540:CDS | 30.0% | |
| TGCTTTAATAAGTGCATCTT+TGG | + | chr8.1:70431678-70431697 | MS.gene019540:intron | 30.0% | |
| TTGGTGAATCAGATAACTTT+AGG | - | chr8.1:70431602-70431621 | None:intergenic | 30.0% | |
| TTTCTCTTCTGTAAGGTTAT+CGG | - | chr8.1:70432290-70432309 | None:intergenic | 30.0% | |
| TTTGCCAACAAAACTATAAC+TGG | + | chr8.1:70431421-70431440 | MS.gene019540:intron | 30.0% | |
| ! | CAAGCTTTGCCTTTAAAAAT+TGG | + | chr8.1:70431974-70431993 | MS.gene019540:intron | 30.0% |
| ! | CATCTATTTTCTCTTCTGTA+AGG | - | chr8.1:70432297-70432316 | None:intergenic | 30.0% |
| ! | CATTTTGTCAAATCCCAATT+TGG | + | chr8.1:70429914-70429933 | MS.gene019540:CDS | 30.0% |
| ! | GAATTGGATTTGAGATAGTA+AGG | + | chr8.1:70429735-70429754 | MS.gene019540:CDS | 30.0% |
| !! | ACTGACTTGTAACATAATGA+CGG | - | chr8.1:70431200-70431219 | None:intergenic | 30.0% |
| !! | CAGTTTTATAAGACTGAGTT+TGG | + | chr8.1:70431216-70431235 | MS.gene019540:intron | 30.0% |
| !! | GGTTTGCTAACGTTAAAATT+TGG | - | chr8.1:70431248-70431267 | None:intergenic | 30.0% |
| !!! | ACACGATTTTGAAGCATTAT+GGG | + | chr8.1:70430519-70430538 | MS.gene019540:intron | 30.0% |
| !!! | TGTACCAGTTATAGTTTTGT+TGG | - | chr8.1:70431428-70431447 | None:intergenic | 30.0% |
| AAAAAGAGGTCTTCATGCTT+TGG | + | chr8.1:70429805-70429824 | MS.gene019540:CDS | 35.0% | |
| AAAAGGAAGACATTTCAGTC+CGG | - | chr8.1:70432606-70432625 | None:intergenic | 35.0% | |
| AACCGTTAACAAACCGTTAT+TGG | - | chr8.1:70432512-70432531 | None:intergenic | 35.0% | |
| AAGGTTTAACTCTCCCATAA+GGG | - | chr8.1:70431707-70431726 | None:intergenic | 35.0% | |
| AATCACACACACCAATTCTA+TGG | - | chr8.1:70430746-70430765 | None:intergenic | 35.0% | |
| AATCTTGGGTCGTAATGTTT+AGG | + | chr8.1:70431899-70431918 | MS.gene019540:intron | 35.0% | |
| ACTGCAAGAGATGAAAAAAG+AGG | + | chr8.1:70429791-70429810 | MS.gene019540:CDS | 35.0% | |
| AGAAATCTTGACTGTAATCG+CGG | + | chr8.1:70430115-70430134 | MS.gene019540:intron | 35.0% | |
| AGACGGCTCATATTTCAATT+TGG | + | chr8.1:70430009-70430028 | MS.gene019540:intron | 35.0% | |
| AGCAAAATTGCATGAAATCG+TGG | + | chr8.1:70430471-70430490 | MS.gene019540:intron | 35.0% | |
| ATATAAGCTCCCAAAGTCTT+AGG | - | chr8.1:70432382-70432401 | None:intergenic | 35.0% | |
| CAAATCCAGAGTATACCAAA+TGG | + | chr8.1:70432238-70432257 | MS.gene019540:intron | 35.0% | |
| CATTAGATTATGAGAATGGC+TGG | + | chr8.1:70432356-70432375 | MS.gene019540:CDS | 35.0% | |
| CCATCTGCTAAGATATTAGA+CGG | + | chr8.1:70429992-70430011 | MS.gene019540:intron | 35.0% | |
| CCTTCAAAGCTATACAGAAA+GGG | - | chr8.1:70430857-70430876 | None:intergenic | 35.0% | |
| CTAAAGTTACGAGTCATTGA+TGG | - | chr8.1:70431940-70431959 | None:intergenic | 35.0% | |
| CTTCAAAGCTATACAGAAAG+GGG | - | chr8.1:70430856-70430875 | None:intergenic | 35.0% | |
| GATGAGATTGATGAAGATGA+TGG | + | chr8.1:70430699-70430718 | MS.gene019540:intron | 35.0% | |
| GCTAACGTTAAAATTTGGCT+TGG | - | chr8.1:70431243-70431262 | None:intergenic | 35.0% | |
| GTGAATGTATCATCCACTTT+GGG | + | chr8.1:70431627-70431646 | MS.gene019540:CDS | 35.0% | |
| GTTAACAATGCAGGGATTAT+TGG | + | chr8.1:70430940-70430959 | MS.gene019540:CDS | 35.0% | |
| TAAAATGGAAGTGATGCAAG+TGG | + | chr8.1:70430657-70430676 | MS.gene019540:intron | 35.0% | |
| TAACAAAAGTTGTGCATTGC+AGG | + | chr8.1:70430918-70430937 | MS.gene019540:intron | 35.0% | |
| TAAGGTTTAACTCTCCCATA+AGG | - | chr8.1:70431708-70431727 | None:intergenic | 35.0% | |
| TCTTGACCATTGAGTTAGAT+AGG | - | chr8.1:70432032-70432051 | None:intergenic | 35.0% | |
| TGAATGTATCATCCACTTTG+GGG | + | chr8.1:70431628-70431647 | MS.gene019540:CDS | 35.0% | |
| TGACACAATTTATCCTTTGC+AGG | + | chr8.1:70431461-70431480 | MS.gene019540:intron | 35.0% | |
| TGATCGAACAAACACAGAAT+TGG | - | chr8.1:70430285-70430304 | None:intergenic | 35.0% | |
| TGCCATTAAATCAACTTGGT+AGG | + | chr8.1:70430381-70430400 | MS.gene019540:intron | 35.0% | |
| TGTGAATGTATCATCCACTT+TGG | + | chr8.1:70431626-70431645 | MS.gene019540:CDS | 35.0% | |
| TGTGATTTGATGTAGCATCT+AGG | + | chr8.1:70430759-70430778 | MS.gene019540:intron | 35.0% | |
| TTTGACAAAATGTGCAAGAG+AGG | - | chr8.1:70429906-70429925 | None:intergenic | 35.0% | |
| ! | ATTTGACTCAAAGTGTTTGG+AGG | - | chr8.1:70431781-70431800 | None:intergenic | 35.0% |
| ! | GAATCAGATAACTTTAGGAG+TGG | - | chr8.1:70431597-70431616 | None:intergenic | 35.0% |
| !! | CACCTACCAAGTTGATTTAA+TGG | - | chr8.1:70430386-70430405 | None:intergenic | 35.0% |
| !! | CAGTACTCAACTCACTTTTA+AGG | + | chr8.1:70431114-70431133 | MS.gene019540:intron | 35.0% |
| !! | CCTTTCTGTATAGCTTTGAA+GGG | + | chr8.1:70430855-70430874 | MS.gene019540:intron | 35.0% |
| !! | TGCCAATAACGGTTTGTTAA+CGG | + | chr8.1:70432507-70432526 | MS.gene019540:CDS | 35.0% |
| !!! | CACACGATTTTGAAGCATTA+TGG | + | chr8.1:70430518-70430537 | MS.gene019540:intron | 35.0% |
| !!! | CCTTCATGTTTTGATCCATT+GGG | + | chr8.1:70429663-70429682 | MS.gene019540:intron | 35.0% |
| !!! | TCCTTCATGTTTTGATCCAT+TGG | + | chr8.1:70429662-70429681 | MS.gene019540:intron | 35.0% |
| AAGCTAGCACTAATTCCCAA+TGG | + | chr8.1:70432556-70432575 | MS.gene019540:CDS | 40.0% | |
| ACTACGAGCAATGATAAAGG+TGG | - | chr8.1:70432176-70432195 | None:intergenic | 40.0% | |
| ACTGGAGCAAACAAAGGAAT+TGG | + | chr8.1:70429719-70429738 | MS.gene019540:CDS | 40.0% | |
| AGCAATGATAAAGGTGGTGA+TGG | - | chr8.1:70432170-70432189 | None:intergenic | 40.0% | |
| AGCTTCAGCTGGAATAAAAG+TGG | + | chr8.1:70429763-70429782 | MS.gene019540:CDS | 40.0% | |
| ATGGGGGATATCCATAGAAT+TGG | + | chr8.1:70430732-70430751 | MS.gene019540:intron | 40.0% | |
| ATTCAATGTGGGACTCGTAA+TGG | - | chr8.1:70431059-70431078 | None:intergenic | 40.0% | |
| CATTGCAGGTTAACAATGCA+GGG | + | chr8.1:70430932-70430951 | MS.gene019540:intron | 40.0% | |
| CCCAATGGATCAAAACATGA+AGG | - | chr8.1:70429666-70429685 | None:intergenic | 40.0% | |
| CCCTTCAAAGCTATACAGAA+AGG | - | chr8.1:70430858-70430877 | None:intergenic | 40.0% | |
| CCGTCTAATATCTTAGCAGA+TGG | - | chr8.1:70429995-70430014 | None:intergenic | 40.0% | |
| GCATCTTTGGATTCCCTTAT+GGG | + | chr8.1:70431691-70431710 | MS.gene019540:intron | 40.0% | |
| GTCCCACATTGAATGAGATA+AGG | + | chr8.1:70431065-70431084 | MS.gene019540:intron | 40.0% | |
| TCCAGAGTATACCAAATGGA+TGG | + | chr8.1:70432242-70432261 | MS.gene019540:intron | 40.0% | |
| TGACGTCCTATCTAACTCAA+TGG | + | chr8.1:70432023-70432042 | MS.gene019540:intron | 40.0% | |
| TGCATCTTTGGATTCCCTTA+TGG | + | chr8.1:70431690-70431709 | MS.gene019540:intron | 40.0% | |
| TTGGAAACACTCAAAGCTTC+TGG | + | chr8.1:70429824-70429843 | MS.gene019540:CDS | 40.0% | |
| ! | AGGCCTTATCTCATTCAATG+TGG | - | chr8.1:70431071-70431090 | None:intergenic | 40.0% |
| ! | CTTCTGGCATGTTCTTTTAC+CGG | + | chr8.1:70432584-70432603 | MS.gene019540:CDS | 40.0% |
| ! | GGCCTTATCTCATTCAATGT+GGG | - | chr8.1:70431070-70431089 | None:intergenic | 40.0% |
| ! | TCTTCTGATAATGCCTGCAA+AGG | - | chr8.1:70431477-70431496 | None:intergenic | 40.0% |
| !! | AGATGATGGCGTTGATATGA+TGG | + | chr8.1:70430713-70430732 | MS.gene019540:intron | 40.0% |
| !! | ATGATGGCGTTGATATGATG+GGG | + | chr8.1:70430715-70430734 | MS.gene019540:intron | 40.0% |
| !! | CCCTTTCTGTATAGCTTTGA+AGG | + | chr8.1:70430854-70430873 | MS.gene019540:intron | 40.0% |
| !! | GATGATGGCGTTGATATGAT+GGG | + | chr8.1:70430714-70430733 | MS.gene019540:intron | 40.0% |
| !! | GGTTTGTTAACGGTTGAAGA+AGG | + | chr8.1:70432517-70432536 | MS.gene019540:CDS | 40.0% |
| !! | GTTTTGATCCATTGGGTGTT+GGG | + | chr8.1:70429670-70429689 | MS.gene019540:intron | 40.0% |
| !!! | TGTTTTGATCCATTGGGTGT+TGG | + | chr8.1:70429669-70429688 | MS.gene019540:intron | 40.0% |
| AAACTCAACCCAACACCCAA+TGG | - | chr8.1:70429681-70429700 | None:intergenic | 45.0% | |
| AATCTGGCTATCTACAACCG+CGG | + | chr8.1:70430991-70431010 | MS.gene019540:CDS | 45.0% | |
| ACAGTTGTGTATTTACCCCG+CGG | - | chr8.1:70431011-70431030 | None:intergenic | 45.0% | |
| ACGATACTCAATCTCGACCT+TGG | - | chr8.1:70432106-70432125 | None:intergenic | 45.0% | |
| ATGCCAGAAGGACTACCATT+GGG | - | chr8.1:70432574-70432593 | None:intergenic | 45.0% | |
| ATTCCCAATGGTAGTCCTTC+TGG | + | chr8.1:70432568-70432587 | MS.gene019540:CDS | 45.0% | |
| CGGTAAAAGAACATGCCAGA+AGG | - | chr8.1:70432586-70432605 | None:intergenic | 45.0% | |
| GCATTGCAGGTTAACAATGC+AGG | + | chr8.1:70430931-70430950 | MS.gene019540:intron | 45.0% | |
| GCCATCCATTTGGTATACTC+TGG | - | chr8.1:70432246-70432265 | None:intergenic | 45.0% | |
| GCGAACACGATGACAAATGA+TGG | - | chr8.1:70430600-70430619 | None:intergenic | 45.0% | |
| TGAGTTTGTCAGGTATGCAG+TGG | + | chr8.1:70429694-70429713 | MS.gene019540:intron | 45.0% | |
| TGCATCAATAGTGTTTGCCC+TGG | + | chr8.1:70432463-70432482 | MS.gene019540:CDS | 45.0% | |
| TTGTCTCATTGACCTGGGTT+GGG | - | chr8.1:70431150-70431169 | None:intergenic | 45.0% | |
| ! | AGGTCTTGTCTCATTGACCT+GGG | - | chr8.1:70431155-70431174 | None:intergenic | 45.0% |
| ! | GATGCAAGTGGTGATGATGA+TGG | + | chr8.1:70430669-70430688 | MS.gene019540:intron | 45.0% |
| !! | AAGCGTTTTGGCCATCCATT+TGG | - | chr8.1:70432256-70432275 | None:intergenic | 45.0% |
| !! | AATGGCTGGCCTAAGACTTT+GGG | + | chr8.1:70432370-70432389 | MS.gene019540:CDS | 45.0% |
| !! | TGATGGCGTTGATATGATGG+GGG | + | chr8.1:70430716-70430735 | MS.gene019540:intron | 45.0% |
| !!! | GCTTCACTGAAGAAGCGTTT+TGG | - | chr8.1:70432268-70432287 | None:intergenic | 45.0% |
| !!! | AAAATATAAGAATATTTTAA+TGG | - | chr8.1:70429608-70429627 | None:intergenic | 5.0% |
| ATCTGGCTATCTACAACCGC+GGG | + | chr8.1:70430992-70431011 | MS.gene019540:CDS | 50.0% | |
| CATGCCAGAAGGACTACCAT+TGG | - | chr8.1:70432575-70432594 | None:intergenic | 50.0% | |
| CTTGTCTCATTGACCTGGGT+TGG | - | chr8.1:70431151-70431170 | None:intergenic | 50.0% | |
| GGTTGAATTAGACCCAACCC+AGG | + | chr8.1:70431135-70431154 | MS.gene019540:intron | 50.0% | |
| GTGGTGACTGGAGCAAACAA+AGG | + | chr8.1:70429713-70429732 | MS.gene019540:CDS | 50.0% | |
| TACCTCTAACTGCCCCAAAG+TGG | - | chr8.1:70431643-70431662 | None:intergenic | 50.0% | |
| ! | CAGGTCTTGTCTCATTGACC+TGG | - | chr8.1:70431156-70431175 | None:intergenic | 50.0% |
| ! | GTAAGGCAGTTAGCTTCAGC+TGG | + | chr8.1:70429752-70429771 | MS.gene019540:CDS | 50.0% |
| !! | AGCGGACTGATCTCAAACCA+AGG | + | chr8.1:70432086-70432105 | MS.gene019540:intron | 50.0% |
| !! | ATCCACTTTGGGGCAGTTAG+AGG | + | chr8.1:70431638-70431657 | MS.gene019540:CDS | 50.0% |
| !! | GAATGGCTGGCCTAAGACTT+TGG | + | chr8.1:70432369-70432388 | MS.gene019540:CDS | 50.0% |
| !! | GCAAGTGGTGATGATGATGG+AGG | + | chr8.1:70430672-70430691 | MS.gene019540:intron | 50.0% |
| !! | GGTGTTGGGTTGAGTTTGTC+AGG | + | chr8.1:70429684-70429703 | MS.gene019540:intron | 50.0% |
| GTCAGGTATGCAGTGGTGAC+TGG | + | chr8.1:70429701-70429720 | MS.gene019540:intron | 55.0% | |
| TCTGGCTATCTACAACCGCG+GGG | + | chr8.1:70430993-70431012 | MS.gene019540:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 70429537 | 70432627 | 70429537 | ID=MS.gene019540 |
| chr8.1 | mRNA | 70429537 | 70432627 | 70429537 | ID=MS.gene019540.t1;Parent=MS.gene019540 |
| chr8.1 | exon | 70429537 | 70429556 | 70429537 | ID=MS.gene019540.t1.exon1;Parent=MS.gene019540.t1 |
| chr8.1 | CDS | 70429537 | 70429556 | 70429537 | ID=cds.MS.gene019540.t1;Parent=MS.gene019540.t1 |
| chr8.1 | exon | 70429706 | 70429952 | 70429706 | ID=MS.gene019540.t1.exon2;Parent=MS.gene019540.t1 |
| chr8.1 | CDS | 70429706 | 70429952 | 70429706 | ID=cds.MS.gene019540.t1;Parent=MS.gene019540.t1 |
| chr8.1 | exon | 70430940 | 70431014 | 70430940 | ID=MS.gene019540.t1.exon3;Parent=MS.gene019540.t1 |
| chr8.1 | CDS | 70430940 | 70431014 | 70430940 | ID=cds.MS.gene019540.t1;Parent=MS.gene019540.t1 |
| chr8.1 | exon | 70431483 | 70431659 | 70431483 | ID=MS.gene019540.t1.exon4;Parent=MS.gene019540.t1 |
| chr8.1 | CDS | 70431483 | 70431659 | 70431483 | ID=cds.MS.gene019540.t1;Parent=MS.gene019540.t1 |
| chr8.1 | exon | 70432247 | 70432627 | 70432247 | ID=MS.gene019540.t1.exon5;Parent=MS.gene019540.t1 |
| chr8.1 | CDS | 70432247 | 70432627 | 70432247 | ID=cds.MS.gene019540.t1;Parent=MS.gene019540.t1 |
| Gene Sequence |
| Protein sequence |
