Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013615.t1 | XP_003598266.2 | 91.7 | 339 | 28 | 0 | 1 | 339 | 17 | 355 | 1.60E-168 | 602.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013615.t1 | Q8N5I4 | 33.5 | 230 | 132 | 7 | 61 | 285 | 38 | 251 | 1.9e-24 | 114.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013615.t1 | G7J0B2 | 91.7 | 339 | 28 | 0 | 1 | 339 | 17 | 355 | 1.2e-168 | 602.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013615 | MS.gene49118 | PPI |
| MS.gene013615 | MS.gene061154 | PPI |
| MS.gene013615 | MS.gene57782 | PPI |
| MS.gene013615 | MS.gene05158 | PPI |
| MS.gene013615 | MS.gene006262 | PPI |
| MS.gene013615 | MS.gene061893 | PPI |
| MS.gene013615 | MS.gene42492 | PPI |
| MS.gene013615 | MS.gene035607 | PPI |
| MS.gene006263 | MS.gene013615 | PPI |
| MS.gene013615 | MS.gene49117 | PPI |
| MS.gene013615 | MS.gene048973 | PPI |
| MS.gene013615 | MS.gene061158 | PPI |
| MS.gene013615 | MS.gene34137 | PPI |
| MS.gene013615 | MS.gene012538 | PPI |
| MS.gene013615 | MS.gene49121 | PPI |
| MS.gene013615 | MS.gene49120 | PPI |
| MS.gene013615 | MS.gene34138 | PPI |
| MS.gene013615 | MS.gene34141 | PPI |
| MS.gene013615 | MS.gene06120 | PPI |
| MS.gene013615 | MS.gene006265 | PPI |
| MS.gene013615 | MS.gene40431 | PPI |
| MS.gene013615 | MS.gene006264 | PPI |
| MS.gene013615 | MS.gene061157 | PPI |
| MS.gene013615 | MS.gene95938 | PPI |
| MS.gene013615 | MS.gene20199 | PPI |
| MS.gene013615 | MS.gene55839 | PPI |
| MS.gene013615 | MS.gene037994 | PPI |
| MS.gene013615 | MS.gene34140 | PPI |
| MS.gene013615 | MS.gene061155 | PPI |
| MS.gene013615 | MS.gene24053 | PPI |
| MS.gene013615 | MS.gene058995 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013615.t1 | MTR_3g009190 | 91.740 | 339 | 28 | 0 | 1 | 339 | 17 | 355 | 0.0 | 620 |
| MS.gene013615.t1 | MTR_3g009190 | 91.988 | 337 | 27 | 0 | 3 | 339 | 1 | 337 | 0.0 | 619 |
| MS.gene013615.t1 | MTR_6g453040 | 90.794 | 315 | 29 | 0 | 25 | 339 | 1 | 315 | 0.0 | 572 |
| MS.gene013615.t1 | MTR_3g091070 | 89.073 | 302 | 15 | 1 | 25 | 326 | 1 | 284 | 0.0 | 538 |
| MS.gene013615.t1 | MTR_6g453040 | 90.175 | 285 | 24 | 1 | 3 | 287 | 1 | 281 | 0.0 | 513 |
| MS.gene013615.t1 | MTR_3g009190 | 93.436 | 259 | 17 | 0 | 66 | 324 | 63 | 321 | 4.83e-173 | 485 |
| MS.gene013615.t1 | MTR_6g453040 | 94.628 | 242 | 13 | 0 | 3 | 244 | 1 | 242 | 7.68e-166 | 462 |
| MS.gene013615.t1 | MTR_3g009200 | 78.453 | 181 | 27 | 3 | 104 | 281 | 2 | 173 | 4.25e-95 | 281 |
| MS.gene013615.t1 | MTR_6g453030 | 87.013 | 77 | 10 | 0 | 94 | 170 | 1 | 77 | 3.35e-42 | 141 |
| MS.gene013615.t1 | MTR_4g105310 | 30.041 | 243 | 153 | 4 | 62 | 300 | 46 | 275 | 8.51e-25 | 103 |
| MS.gene013615.t1 | MTR_3g077410 | 30.189 | 265 | 166 | 7 | 62 | 322 | 35 | 284 | 1.98e-24 | 102 |
| MS.gene013615.t1 | MTR_8g099995 | 30.802 | 237 | 149 | 4 | 68 | 300 | 39 | 264 | 2.13e-24 | 102 |
| MS.gene013615.t1 | MTR_4g105310 | 31.416 | 226 | 138 | 5 | 62 | 283 | 46 | 258 | 3.33e-24 | 100 |
| MS.gene013615.t1 | MTR_7g099850 | 30.357 | 224 | 134 | 5 | 67 | 283 | 37 | 245 | 2.49e-20 | 90.5 |
| MS.gene013615.t1 | MTR_8g098415 | 31.349 | 252 | 147 | 7 | 67 | 308 | 32 | 267 | 4.41e-20 | 89.7 |
| MS.gene013615.t1 | MTR_8g098415 | 31.373 | 255 | 143 | 8 | 67 | 308 | 32 | 267 | 5.73e-20 | 89.4 |
| MS.gene013615.t1 | MTR_6g041980 | 26.506 | 249 | 164 | 8 | 9 | 247 | 8 | 247 | 1.49e-18 | 84.3 |
| MS.gene013615.t1 | MTR_1g068970 | 28.936 | 235 | 150 | 6 | 67 | 297 | 37 | 258 | 1.50e-18 | 85.5 |
| MS.gene013615.t1 | MTR_6g041980 | 27.434 | 226 | 146 | 7 | 9 | 225 | 8 | 224 | 1.61e-17 | 82.8 |
| MS.gene013615.t1 | MTR_1g100305 | 30.233 | 258 | 142 | 9 | 67 | 308 | 32 | 267 | 1.94e-17 | 82.0 |
| MS.gene013615.t1 | MTR_1g100395 | 28.125 | 256 | 150 | 7 | 67 | 308 | 32 | 267 | 6.74e-17 | 80.5 |
| MS.gene013615.t1 | MTR_1g100315 | 29.825 | 228 | 137 | 7 | 67 | 287 | 32 | 243 | 1.75e-16 | 79.3 |
| MS.gene013615.t1 | MTR_1g100335 | 30.088 | 226 | 135 | 7 | 67 | 285 | 32 | 241 | 2.76e-16 | 77.8 |
| MS.gene013615.t1 | MTR_1g100335 | 28.175 | 252 | 155 | 8 | 67 | 308 | 32 | 267 | 3.87e-16 | 78.2 |
| MS.gene013615.t1 | MTR_1g100335 | 30.088 | 226 | 135 | 7 | 67 | 285 | 32 | 241 | 3.95e-16 | 77.8 |
| MS.gene013615.t1 | MTR_6g081020 | 28.713 | 303 | 175 | 13 | 38 | 324 | 34 | 311 | 3.93e-15 | 75.9 |
| MS.gene013615.t1 | MTR_8g098415 | 30.882 | 204 | 115 | 7 | 115 | 308 | 23 | 210 | 3.99e-15 | 74.7 |
| MS.gene013615.t1 | MTR_6g053550 | 29.958 | 237 | 132 | 9 | 66 | 289 | 39 | 254 | 9.64e-15 | 74.3 |
| MS.gene013615.t1 | MTR_8g098415 | 31.658 | 199 | 115 | 5 | 67 | 258 | 32 | 216 | 1.42e-14 | 72.4 |
| MS.gene013615.t1 | MTR_2g079710 | 31.076 | 251 | 143 | 8 | 55 | 284 | 75 | 316 | 2.85e-14 | 73.6 |
| MS.gene013615.t1 | MTR_6g053600 | 28.854 | 253 | 141 | 10 | 67 | 301 | 26 | 257 | 1.16e-13 | 70.9 |
| MS.gene013615.t1 | MTR_1g068970 | 26.842 | 190 | 122 | 5 | 112 | 297 | 15 | 191 | 1.20e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013615.t1 | AT5G04070 | 56.825 | 315 | 136 | 0 | 7 | 321 | 1 | 315 | 1.10e-115 | 339 |
| MS.gene013615.t1 | AT5G15940 | 54.403 | 318 | 144 | 1 | 6 | 322 | 1 | 318 | 2.93e-109 | 322 |
| MS.gene013615.t1 | AT5G15940 | 54.037 | 322 | 147 | 1 | 6 | 326 | 1 | 322 | 1.80e-108 | 321 |
| MS.gene013615.t1 | AT5G15940 | 54.037 | 322 | 147 | 1 | 6 | 326 | 1 | 322 | 1.80e-108 | 321 |
| MS.gene013615.t1 | AT5G15940 | 54.206 | 321 | 146 | 1 | 7 | 326 | 1 | 321 | 4.50e-108 | 320 |
| MS.gene013615.t1 | AT2G37540 | 33.333 | 228 | 135 | 6 | 67 | 290 | 36 | 250 | 4.29e-24 | 99.8 |
| MS.gene013615.t1 | AT4G24050 | 31.707 | 246 | 137 | 7 | 67 | 300 | 37 | 263 | 1.09e-23 | 99.0 |
| MS.gene013615.t1 | AT2G37540 | 33.484 | 221 | 130 | 6 | 67 | 283 | 36 | 243 | 1.33e-23 | 99.8 |
| MS.gene013615.t1 | AT4G24050 | 31.837 | 245 | 136 | 7 | 68 | 300 | 38 | 263 | 3.76e-23 | 98.6 |
| MS.gene013615.t1 | AT4G23430 | 31.496 | 254 | 147 | 7 | 66 | 308 | 31 | 268 | 1.01e-22 | 97.1 |
| MS.gene013615.t1 | AT4G23430 | 31.349 | 252 | 148 | 7 | 66 | 308 | 31 | 266 | 3.53e-22 | 95.5 |
| MS.gene013615.t1 | AT5G50130 | 29.864 | 221 | 138 | 5 | 67 | 283 | 39 | 246 | 3.68e-22 | 94.4 |
| MS.gene013615.t1 | AT1G64590 | 30.672 | 238 | 148 | 5 | 68 | 300 | 38 | 263 | 6.35e-22 | 95.1 |
| MS.gene013615.t1 | AT5G50130 | 28.692 | 237 | 152 | 5 | 68 | 300 | 40 | 263 | 7.54e-22 | 94.7 |
| MS.gene013615.t1 | AT5G50130 | 28.390 | 236 | 152 | 5 | 69 | 300 | 8 | 230 | 2.33e-21 | 93.2 |
| MS.gene013615.t1 | AT5G50130 | 29.680 | 219 | 137 | 5 | 69 | 283 | 8 | 213 | 2.39e-21 | 92.8 |
| MS.gene013615.t1 | AT5G50130 | 29.730 | 222 | 138 | 6 | 67 | 283 | 39 | 247 | 8.62e-21 | 90.5 |
| MS.gene013615.t1 | AT5G50130 | 28.571 | 238 | 152 | 6 | 68 | 300 | 40 | 264 | 1.41e-20 | 91.3 |
| MS.gene013615.t1 | AT4G09750 | 28.846 | 260 | 149 | 9 | 67 | 320 | 46 | 275 | 1.48e-20 | 91.3 |
| MS.gene013615.t1 | AT5G50130 | 28.571 | 238 | 152 | 6 | 68 | 300 | 40 | 264 | 1.80e-20 | 90.9 |
| MS.gene013615.t1 | AT4G23420 | 31.416 | 226 | 124 | 9 | 67 | 281 | 32 | 237 | 4.26e-20 | 88.6 |
| MS.gene013615.t1 | AT5G50130 | 28.270 | 237 | 152 | 6 | 69 | 300 | 8 | 231 | 5.04e-20 | 89.4 |
| MS.gene013615.t1 | AT5G50130 | 29.545 | 220 | 137 | 6 | 69 | 283 | 8 | 214 | 5.72e-20 | 89.0 |
| MS.gene013615.t1 | AT4G23420 | 30.973 | 226 | 125 | 8 | 67 | 281 | 32 | 237 | 9.07e-20 | 87.8 |
| MS.gene013615.t1 | AT4G23420 | 31.416 | 226 | 124 | 9 | 67 | 281 | 49 | 254 | 1.53e-19 | 88.6 |
| MS.gene013615.t1 | AT4G23420 | 31.416 | 226 | 124 | 9 | 67 | 281 | 32 | 237 | 1.55e-19 | 88.2 |
| MS.gene013615.t1 | AT4G23420 | 31.416 | 226 | 124 | 9 | 67 | 281 | 32 | 237 | 1.55e-19 | 88.2 |
| MS.gene013615.t1 | AT5G02540 | 30.531 | 226 | 140 | 5 | 74 | 295 | 43 | 255 | 3.96e-18 | 84.3 |
| MS.gene013615.t1 | AT5G54190 | 30.841 | 214 | 122 | 6 | 64 | 258 | 92 | 298 | 2.24e-16 | 80.1 |
| MS.gene013615.t1 | AT4G11410 | 29.279 | 222 | 140 | 5 | 66 | 283 | 31 | 239 | 2.35e-16 | 78.2 |
| MS.gene013615.t1 | AT5G53090 | 32.031 | 256 | 144 | 11 | 38 | 286 | 37 | 269 | 3.39e-16 | 79.3 |
| MS.gene013615.t1 | AT4G23430 | 28.800 | 250 | 149 | 7 | 66 | 308 | 31 | 258 | 3.51e-16 | 78.6 |
| MS.gene013615.t1 | AT4G11410 | 29.279 | 222 | 140 | 5 | 66 | 283 | 31 | 239 | 9.51e-16 | 77.4 |
| MS.gene013615.t1 | AT4G23430 | 28.629 | 248 | 150 | 7 | 66 | 308 | 31 | 256 | 1.14e-15 | 77.0 |
| MS.gene013615.t1 | AT4G27760 | 32.283 | 254 | 143 | 12 | 40 | 285 | 37 | 269 | 1.28e-15 | 77.4 |
| MS.gene013615.t1 | AT5G53100 | 33.047 | 233 | 131 | 9 | 63 | 286 | 43 | 259 | 7.42e-15 | 75.1 |
| MS.gene013615.t1 | AT5G61830 | 26.613 | 248 | 136 | 6 | 66 | 279 | 38 | 273 | 1.02e-14 | 74.3 |
| MS.gene013615.t1 | AT5G61830 | 26.613 | 248 | 136 | 6 | 66 | 279 | 38 | 273 | 1.02e-14 | 74.3 |
| MS.gene013615.t1 | AT4G27440 | 27.500 | 240 | 146 | 7 | 64 | 284 | 88 | 318 | 4.51e-13 | 70.1 |
| MS.gene013615.t1 | AT4G27440 | 27.500 | 240 | 146 | 7 | 64 | 284 | 88 | 318 | 4.51e-13 | 70.1 |
| MS.gene013615.t1 | AT1G03630 | 28.870 | 239 | 143 | 7 | 64 | 284 | 87 | 316 | 1.40e-12 | 68.6 |
| MS.gene013615.t1 | AT1G03630 | 28.870 | 239 | 143 | 7 | 64 | 284 | 89 | 318 | 1.67e-12 | 68.2 |
| MS.gene013615.t1 | AT5G51030 | 26.295 | 251 | 141 | 11 | 61 | 279 | 34 | 272 | 3.89e-11 | 63.5 |
Find 79 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGTTACATTAACAATTT+TGG | 0.129013 | 3.4:+83458633 | None:intergenic |
| TTCTCATTACCAATTGTTTA+AGG | 0.132723 | 3.4:-83460319 | MS.gene013615:CDS |
| TTCCCTGCGGCAGTGGCTTT+TGG | 0.188298 | 3.4:-83459263 | MS.gene013615:CDS |
| GAAGGATATGTTGTTGTTAT+TGG | 0.221951 | 3.4:-83460082 | MS.gene013615:intron |
| ATGACGCAAACGGGCTTATT+AGG | 0.256187 | 3.4:+83460240 | None:intergenic |
| CCAACCTTTGATCTTTGTTA+TGG | 0.302323 | 3.4:+83459357 | None:intergenic |
| GGGAATGATCAATTTGATAA+AGG | 0.312496 | 3.4:-83460421 | MS.gene013615:CDS |
| GTTGATGAGGGAACTGTATC+TGG | 0.316956 | 3.4:-83458431 | MS.gene013615:CDS |
| GTGTAGGCAACTTCTGGCTT+GGG | 0.349440 | 3.4:-83460133 | MS.gene013615:intron |
| ACTGAAGCGCCTACGCCTAT+TGG | 0.350236 | 3.4:-83457076 | MS.gene013615:CDS |
| TACTGCATGCAAGCTTTCTA+AGG | 0.358613 | 3.4:-83460104 | MS.gene013615:CDS |
| AACAAGAGCGGCATCAATAA+TGG | 0.358851 | 3.4:+83457029 | None:intergenic |
| GCCACCCAAGACAGGCTTGC+TGG | 0.372458 | 3.4:+83457108 | None:intergenic |
| TGTGTAGGCAACTTCTGGCT+TGG | 0.376356 | 3.4:-83460134 | MS.gene013615:intron |
| AGAAGCTTGGTCATAACAAA+TGG | 0.391340 | 3.4:+83458688 | None:intergenic |
| TGCATCAGTGTTGCAGATCC+TGG | 0.392661 | 3.4:-83457162 | MS.gene013615:intron |
| CTCAATTCAATTCTTGAGAA+TGG | 0.399695 | 3.4:-83460370 | MS.gene013615:CDS |
| TACTCATAGATCTGAGCATA+TGG | 0.415666 | 3.4:+83458380 | None:intergenic |
| AGTGCGAATCCTTAAACAAT+TGG | 0.431135 | 3.4:+83460310 | None:intergenic |
| TTCTTCAGTTACTAATATGC+AGG | 0.447497 | 3.4:-83458453 | MS.gene013615:intron |
| ATGATCGGCACAAATTATAT+CGG | 0.464816 | 3.4:-83458712 | MS.gene013615:CDS |
| ACGCCGGTGATGACGCAAAC+GGG | 0.466622 | 3.4:+83460231 | None:intergenic |
| CGCACTCAGAGGATTCCAAT+AGG | 0.477071 | 3.4:+83457061 | None:intergenic |
| AAGTTCCAGCAAGCCTGTCT+TGG | 0.478894 | 3.4:-83457113 | MS.gene013615:CDS |
| CACCGACAGCTTTGCCAGAT+GGG | 0.480702 | 3.4:-83458236 | MS.gene013615:CDS |
| AATCCAAAAGCCACTGCCGC+AGG | 0.480743 | 3.4:+83459260 | None:intergenic |
| TCTTGAGAATGGCGTTGCTA+TGG | 0.482908 | 3.4:-83460359 | MS.gene013615:CDS |
| ATGTTTGTTTGTACAACTCC+AGG | 0.484002 | 3.4:+83457144 | None:intergenic |
| AACGGGCTTATTAGGATAAG+TGG | 0.486333 | 3.4:+83460248 | None:intergenic |
| AGTTCCAGCAAGCCTGTCTT+GGG | 0.486423 | 3.4:-83457112 | MS.gene013615:CDS |
| TCTGATGAGATTTACCCATC+TGG | 0.490381 | 3.4:+83458222 | None:intergenic |
| ATGAGAAAATGCAACAGAAA+AGG | 0.493406 | 3.4:+83460335 | None:intergenic |
| TACGCCGGTGATGACGCAAA+CGG | 0.502981 | 3.4:+83460230 | None:intergenic |
| TAGCCCTCGGCTGTGACTCT+AGG | 0.508982 | 3.4:+83459178 | None:intergenic |
| ACTCTTTCTCCCAGGATGAT+CGG | 0.513630 | 3.4:-83458727 | MS.gene013615:intron |
| GGATTCCGATTTGCACTGCT+CGG | 0.516338 | 3.4:-83459242 | MS.gene013615:CDS |
| TACTAATATGCAGGTTGATG+AGG | 0.517745 | 3.4:-83458444 | MS.gene013615:CDS |
| CTGTACCGAGCAGTGCAAAT+CGG | 0.519892 | 3.4:+83459237 | None:intergenic |
| CCACCGACAGCTTTGCCAGA+TGG | 0.523592 | 3.4:-83458237 | MS.gene013615:CDS |
| CAAAGAATGCCACCCAAGAC+AGG | 0.524956 | 3.4:+83457100 | None:intergenic |
| CAGCCTGAAAAGCTTTGAGA+TGG | 0.527541 | 3.4:+83459323 | None:intergenic |
| CAGATACTAATAAACAATGC+TGG | 0.527707 | 3.4:-83459217 | MS.gene013615:CDS |
| TCAGTACTTCCCTGCGGCAG+TGG | 0.529421 | 3.4:-83459270 | MS.gene013615:CDS |
| AAGAAGTGGTAATAGAAGCT+TGG | 0.533171 | 3.4:+83458675 | None:intergenic |
| ACAAAATCGTTTCATATCCA+AGG | 0.536777 | 3.4:-83460281 | MS.gene013615:CDS |
| ATTACCGACACGGAAGGATA+AGG | 0.544759 | 3.4:+83456894 | None:intergenic |
| GAAGCTTGGTCATAACAAAT+GGG | 0.550505 | 3.4:+83458689 | None:intergenic |
| TATTGGAATCCTCTGAGTGC+GGG | 0.558043 | 3.4:-83457059 | MS.gene013615:CDS |
| ACAGGACTGCTTTCAAGAAG+TGG | 0.566270 | 3.4:+83458661 | None:intergenic |
| GCATGCAAGCTTTCTAAGGA+AGG | 0.570982 | 3.4:-83460100 | MS.gene013615:CDS |
| ACTAATATGCAGGTTGATGA+GGG | 0.578265 | 3.4:-83458443 | MS.gene013615:CDS |
| TACCCATCTGGCAAAGCTGT+CGG | 0.582388 | 3.4:+83458234 | None:intergenic |
| ATCAGAGCAGTTGTTGTCAG+AGG | 0.583512 | 3.4:-83459470 | MS.gene013615:intron |
| AAGCCCGTTTGCGTCATCAC+CGG | 0.588542 | 3.4:-83460234 | MS.gene013615:CDS |
| ATTTGATAAAGGATTTATCA+CGG | 0.588831 | 3.4:-83460410 | MS.gene013615:CDS |
| AAAGATCAAAGGTTGGAATG+AGG | 0.601841 | 3.4:-83459350 | MS.gene013615:CDS |
| ATCCAAAAGCCACTGCCGCA+GGG | 0.603195 | 3.4:+83459261 | None:intergenic |
| ACATCATTTACTCACCGAGC+TGG | 0.604721 | 3.4:-83458616 | MS.gene013615:intron |
| TCCAGCAAGCCTGTCTTGGG+TGG | 0.609392 | 3.4:-83457109 | MS.gene013615:CDS |
| CAGAGGATTCCAATAGGCGT+AGG | 0.613100 | 3.4:+83457067 | None:intergenic |
| AGATTACTGATCGTAGCCCT+CGG | 0.614754 | 3.4:+83459165 | None:intergenic |
| ATCTCCTAGAGTCACAGCCG+AGG | 0.615116 | 3.4:-83459182 | MS.gene013615:CDS |
| CCATAACAAAGATCAAAGGT+TGG | 0.615580 | 3.4:-83459357 | MS.gene013615:CDS |
| AGCCTGAAAAGCTTTGAGAT+GGG | 0.618219 | 3.4:+83459324 | None:intergenic |
| TCAAGAATTGAATTGAGCAG+AGG | 0.618735 | 3.4:+83460376 | None:intergenic |
| CCATCTGGCAAAGCTGTCGG+TGG | 0.618971 | 3.4:+83458237 | None:intergenic |
| TAATTGACTGAAGTGACGAA+AGG | 0.626842 | 3.4:+83459299 | None:intergenic |
| TAGACCATAACAAAGATCAA+AGG | 0.629385 | 3.4:-83459361 | MS.gene013615:CDS |
| CTATTGGAATCCTCTGAGTG+CGG | 0.632369 | 3.4:-83457060 | MS.gene013615:CDS |
| AGATGAATTACCGACACGGA+AGG | 0.642812 | 3.4:+83456888 | None:intergenic |
| AAATGATTATCCTACCAGCT+CGG | 0.644742 | 3.4:+83458602 | None:intergenic |
| TAAGTGGAAGGTGAAGACCT+TGG | 0.645367 | 3.4:+83460264 | None:intergenic |
| ACTCACAGGCGGAACAAGAG+CGG | 0.651280 | 3.4:+83457017 | None:intergenic |
| TCTCCTAGAGTCACAGCCGA+GGG | 0.656798 | 3.4:-83459181 | MS.gene013615:CDS |
| GGAATCATTCCCGCACTCAG+AGG | 0.664247 | 3.4:+83457050 | None:intergenic |
| GGCTTATTAGGATAAGTGGA+AGG | 0.667420 | 3.4:+83460252 | None:intergenic |
| AATGCCTTATCCTTCCGTGT+CGG | 0.685014 | 3.4:-83456898 | MS.gene013615:CDS |
| TTCAAGATGAATTACCGACA+CGG | 0.706273 | 3.4:+83456884 | None:intergenic |
| TAAAGTTCAGTACTTCCCTG+CGG | 0.748172 | 3.4:-83459276 | MS.gene013615:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAACCTATATTTATAAA+AGG | + | chr3.4:83459475-83459494 | None:intergenic | 10.0% |
| !! | AATAACCTATATTTATAAAA+GGG | + | chr3.4:83459474-83459493 | None:intergenic | 10.0% |
| !! | ACAAAATTCTGAATATTTAT+AGG | - | chr3.4:83459430-83459449 | MS.gene013615:intron | 15.0% |
| !! | ATAAAAGGAATTAAAACATA+AGG | + | chr3.4:83457299-83457318 | None:intergenic | 15.0% |
| !! | ATAATATAAATCAAAAAGTG+AGG | + | chr3.4:83458736-83458755 | None:intergenic | 15.0% |
| !! | CAAAATTCTGAATATTTATA+GGG | - | chr3.4:83459431-83459450 | MS.gene013615:intron | 15.0% |
| !! | TATATTAATTATTAGCATCA+TGG | - | chr3.4:83457869-83457888 | MS.gene013615:intron | 15.0% |
| !!! | ATAAAGCTTTATTATATTTC+TGG | - | chr3.4:83460071-83460090 | MS.gene013615:intron | 15.0% |
| !!! | ATTAACCCTTTTATAAATAT+AGG | - | chr3.4:83459466-83459485 | MS.gene013615:intron | 15.0% |
| !! | AACATGAATAAAAATCATAC+GGG | - | chr3.4:83459993-83460012 | MS.gene013615:intron | 20.0% |
| !! | ACAAAACTGTGAATATTTAT+AGG | + | chr3.4:83459213-83459232 | None:intergenic | 20.0% |
| !! | ATAAATAAATTATGCACATC+AGG | + | chr3.4:83458304-83458323 | None:intergenic | 20.0% |
| !! | ATCACAGTAATACATTAATT+AGG | + | chr3.4:83459514-83459533 | None:intergenic | 20.0% |
| !! | ATTAAGATATTTACGATGAA+TGG | + | chr3.4:83457906-83457925 | None:intergenic | 20.0% |
| !! | ATTTGATAAAGGATTTATCA+CGG | - | chr3.4:83456898-83456917 | MS.gene013615:CDS | 20.0% |
| !! | CAAAACTGTGAATATTTATA+GGG | + | chr3.4:83459212-83459231 | None:intergenic | 20.0% |
| !! | CAGAAAATGAATATTAAAAG+TGG | + | chr3.4:83460118-83460137 | None:intergenic | 20.0% |
| !! | CATAATTTATTTATGCTTTG+GGG | - | chr3.4:83458310-83458329 | MS.gene013615:intron | 20.0% |
| !! | CCATAAAATTGATCAAATTA+TGG | - | chr3.4:83457397-83457416 | MS.gene013615:intron | 20.0% |
| !! | GAACATGAATAAAAATCATA+CGG | - | chr3.4:83459992-83460011 | MS.gene013615:intron | 20.0% |
| !! | GCATAATTTATTTATGCTTT+GGG | - | chr3.4:83458309-83458328 | MS.gene013615:intron | 20.0% |
| !! | TGCATAATTTATTTATGCTT+TGG | - | chr3.4:83458308-83458327 | MS.gene013615:intron | 20.0% |
| !!! | AAAAAATTCACCAACATTTT+TGG | + | chr3.4:83459304-83459323 | None:intergenic | 20.0% |
| !!! | AAAGGAAATAAAAGTTGATT+TGG | + | chr3.4:83459131-83459150 | None:intergenic | 20.0% |
| !!! | AAAGTGTGATTTTATTTTGT+AGG | + | chr3.4:83459244-83459263 | None:intergenic | 20.0% |
| !!! | AAGTGTGATTTTATTTTGTA+GGG | + | chr3.4:83459243-83459262 | None:intergenic | 20.0% |
| !!! | CCATAATTTGATCAATTTTA+TGG | + | chr3.4:83457400-83457419 | None:intergenic | 20.0% |
| !!! | GAAAATCAATAAGTGTTTTA+TGG | + | chr3.4:83458795-83458814 | None:intergenic | 20.0% |
| !!! | TGATGTTACATTAACAATTT+TGG | + | chr3.4:83458678-83458697 | None:intergenic | 20.0% |
| ! | AACAAAAATACATGCTAGTT+AGG | + | chr3.4:83459019-83459038 | None:intergenic | 25.0% |
| ! | ATTGACATAATCACAAGATT+TGG | + | chr3.4:83457472-83457491 | None:intergenic | 25.0% |
| ! | CAAAATTCTATCTTTATCGT+TGG | - | chr3.4:83458203-83458222 | MS.gene013615:intron | 25.0% |
| ! | GATAAATAATCTTGCATCAA+AGG | + | chr3.4:83458480-83458499 | None:intergenic | 25.0% |
| ! | GTGAATTGTTAGCATATAAA+AGG | + | chr3.4:83457314-83457333 | None:intergenic | 25.0% |
| ! | TAATTATCCAATGAGTTTGA+AGG | - | chr3.4:83459838-83459857 | MS.gene013615:intron | 25.0% |
| ! | TCTACTTTGTCAAATTTCTA+CGG | - | chr3.4:83457623-83457642 | MS.gene013615:intron | 25.0% |
| ! | TTAATGAAATTTGCAAGAGA+AGG | + | chr3.4:83457118-83457137 | None:intergenic | 25.0% |
| ! | TTATAAAAACACACAACACT+TGG | + | chr3.4:83459168-83459187 | None:intergenic | 25.0% |
| ! | TTCAAACTCATTGGATAATT+AGG | + | chr3.4:83459839-83459858 | None:intergenic | 25.0% |
| ! | TTCTCATTACCAATTGTTTA+AGG | - | chr3.4:83456989-83457008 | MS.gene013615:intron | 25.0% |
| !! | AAAGCTTAAAACATTTTGCA+AGG | + | chr3.4:83460047-83460066 | None:intergenic | 25.0% |
| !! | AATAATTTGTAGGAAAGTCA+TGG | + | chr3.4:83459570-83459589 | None:intergenic | 25.0% |
| !! | ACATTTTCCTTCAGTATTTT+AGG | - | chr3.4:83459276-83459295 | MS.gene013615:CDS | 25.0% |
| !! | AGAGCTTTATATAATCACAA+TGG | + | chr3.4:83457425-83457444 | None:intergenic | 25.0% |
| !! | CATTTTCCTTCAGTATTTTA+GGG | - | chr3.4:83459277-83459296 | MS.gene013615:CDS | 25.0% |
| !!! | AAAGTGCGATTTTATTTTGT+AGG | - | chr3.4:83459399-83459418 | MS.gene013615:intron | 25.0% |
| !!! | AAGTGCGATTTTATTTTGTA+GGG | - | chr3.4:83459400-83459419 | MS.gene013615:intron | 25.0% |
| !!! | AGTGTTGTGTGTTTTTATAA+AGG | - | chr3.4:83459168-83459187 | MS.gene013615:intron | 25.0% |
| !!! | AGTTCTGAACTTTCAATTAA+AGG | - | chr3.4:83459708-83459727 | MS.gene013615:intron | 25.0% |
| !!! | ATATTTCTGGTTAATAACCA+TGG | - | chr3.4:83460084-83460103 | MS.gene013615:CDS | 25.0% |
| !!! | ATGCTGATGAAATTTTTTAC+AGG | - | chr3.4:83459370-83459389 | MS.gene013615:intron | 25.0% |
| !!! | CCTGATGGAAATTTTTTATA+GGG | - | chr3.4:83459340-83459359 | MS.gene013615:CDS | 25.0% |
| !!! | CTTATTGATTTTCTCTACAA+TGG | - | chr3.4:83458802-83458821 | MS.gene013615:intron | 25.0% |
| !!! | GTGTTGTGTGTTTTTATAAA+GGG | - | chr3.4:83459169-83459188 | MS.gene013615:intron | 25.0% |
| !!! | GTTGGTGAATTTTTTTTACA+GGG | - | chr3.4:83459309-83459328 | MS.gene013615:CDS | 25.0% |
| !!! | TATTTCTGGTTAATAACCAT+GGG | - | chr3.4:83460085-83460104 | MS.gene013615:CDS | 25.0% |
| !!! | TCCTGATGGAAATTTTTTAT+AGG | - | chr3.4:83459339-83459358 | MS.gene013615:CDS | 25.0% |
| !!! | TGCTGATGAAATTTTTTACA+GGG | - | chr3.4:83459371-83459390 | MS.gene013615:intron | 25.0% |
| !!! | TGTTGGTGAATTTTTTTTAC+AGG | - | chr3.4:83459308-83459327 | MS.gene013615:CDS | 25.0% |
| !!! | TTAAATGTCAACTTTTGAGA+TGG | - | chr3.4:83458352-83458371 | MS.gene013615:intron | 25.0% |
| !!! | TTAACAATTTTGGAAGATAC+AGG | + | chr3.4:83458668-83458687 | None:intergenic | 25.0% |
| !!! | TTCTATGATTTTTTCTGTGT+AGG | - | chr3.4:83457159-83457178 | MS.gene013615:intron | 25.0% |
| AAACCCAAAGTTACTCTTAT+TGG | + | chr3.4:83459943-83459962 | None:intergenic | 30.0% | |
| ACAAAATCGTTTCATATCCA+AGG | - | chr3.4:83457027-83457046 | MS.gene013615:CDS | 30.0% | |
| ATACATGCTAGTTAGGAATT+AGG | + | chr3.4:83459012-83459031 | None:intergenic | 30.0% | |
| ATCATGTTCTTTCCATTGTT+TGG | - | chr3.4:83457924-83457943 | MS.gene013615:intron | 30.0% | |
| ATGAGAAAATGCAACAGAAA+AGG | + | chr3.4:83456976-83456995 | None:intergenic | 30.0% | |
| ATGATCGGCACAAATTATAT+CGG | - | chr3.4:83458596-83458615 | MS.gene013615:intron | 30.0% | |
| CAGAACTATATGAGAATTAC+AGG | + | chr3.4:83459695-83459714 | None:intergenic | 30.0% | |
| CAGATACTAATAAACAATGC+TGG | - | chr3.4:83458091-83458110 | MS.gene013615:intron | 30.0% | |
| CCCTATAAAAAATTTCCATC+AGG | + | chr3.4:83459343-83459362 | None:intergenic | 30.0% | |
| CTATATGAGAATTACAGGTT+TGG | + | chr3.4:83459690-83459709 | None:intergenic | 30.0% | |
| CTCAATTCAATTCTTGAGAA+TGG | - | chr3.4:83456938-83456957 | MS.gene013615:intron | 30.0% | |
| GAAAGAGTGGAAAATATAGT+TGG | + | chr3.4:83458569-83458588 | None:intergenic | 30.0% | |
| GGATTTCACTCAGAATTAAA+TGG | + | chr3.4:83457351-83457370 | None:intergenic | 30.0% | |
| GGGAATGATCAATTTGATAA+AGG | - | chr3.4:83456887-83456906 | MS.gene013615:CDS | 30.0% | |
| TACATGCTAGTTAGGAATTA+GGG | + | chr3.4:83459011-83459030 | None:intergenic | 30.0% | |
| TAGACCATAACAAAGATCAA+AGG | - | chr3.4:83457947-83457966 | MS.gene013615:intron | 30.0% | |
| TCTTTCGAACACACTATTAT+TGG | + | chr3.4:83457743-83457762 | None:intergenic | 30.0% | |
| TTCTTCAGTTACTAATATGC+AGG | - | chr3.4:83458855-83458874 | MS.gene013615:intron | 30.0% | |
| ! | ACCTTTTATTGTGTTATGCA+AGG | + | chr3.4:83458249-83458268 | None:intergenic | 30.0% |
| ! | CACAATGGATGCATTTTTAT+GGG | - | chr3.4:83458452-83458471 | MS.gene013615:intron | 30.0% |
| ! | CATTTTTCCTTCAAACTCAT+TGG | + | chr3.4:83459848-83459867 | None:intergenic | 30.0% |
| ! | CTTGGGAAACAATAATTTGT+AGG | + | chr3.4:83459580-83459599 | None:intergenic | 30.0% |
| ! | GAAGGATATGTTGTTGTTAT+TGG | - | chr3.4:83457226-83457245 | MS.gene013615:intron | 30.0% |
| !! | ATTTTAGGGACCAAAAATGT+TGG | - | chr3.4:83459291-83459310 | MS.gene013615:CDS | 30.0% |
| AAAGATCAAAGGTTGGAATG+AGG | - | chr3.4:83457958-83457977 | MS.gene013615:intron | 35.0% | |
| AAATGATTATCCTACCAGCT+CGG | + | chr3.4:83458709-83458728 | None:intergenic | 35.0% | |
| AAGAAGTGGTAATAGAAGCT+TGG | + | chr3.4:83458636-83458655 | None:intergenic | 35.0% | |
| AATTAGGTAGTTGTAGCTTC+AGG | + | chr3.4:83459823-83459842 | None:intergenic | 35.0% | |
| ACAACACTTGGAAAAAAGGA+TGG | + | chr3.4:83459156-83459175 | None:intergenic | 35.0% | |
| ACACACAACACTTGGAAAAA+AGG | + | chr3.4:83459160-83459179 | None:intergenic | 35.0% | |
| ACTTTCTATTAGTGCATGTC+TGG | + | chr3.4:83457507-83457526 | None:intergenic | 35.0% | |
| AGAAGCTTGGTCATAACAAA+TGG | + | chr3.4:83458623-83458642 | None:intergenic | 35.0% | |
| AGACATGCACTAATAGAAAG+TGG | - | chr3.4:83457506-83457525 | MS.gene013615:intron | 35.0% | |
| AGCACCAATAAGAGTAACTT+TGG | - | chr3.4:83459936-83459955 | MS.gene013615:intron | 35.0% | |
| AGTGCGAATCCTTAAACAAT+TGG | + | chr3.4:83457001-83457020 | None:intergenic | 35.0% | |
| AGTGTGTTCGAAAGACTATT+TGG | - | chr3.4:83457748-83457767 | MS.gene013615:intron | 35.0% | |
| ATACTGAAGGAAAATGTCAC+AGG | + | chr3.4:83459273-83459292 | None:intergenic | 35.0% | |
| ATGTTTGTTTGTACAACTCC+AGG | + | chr3.4:83460167-83460186 | None:intergenic | 35.0% | |
| ATTAGGTAGTTGTAGCTTCA+GGG | + | chr3.4:83459822-83459841 | None:intergenic | 35.0% | |
| CAATCCATAACAGGAATCTT+AGG | + | chr3.4:83457805-83457824 | None:intergenic | 35.0% | |
| CCAACCTTTGATCTTTGTTA+TGG | + | chr3.4:83457954-83457973 | None:intergenic | 35.0% | |
| CCATAACAAAGATCAAAGGT+TGG | - | chr3.4:83457951-83457970 | MS.gene013615:intron | 35.0% | |
| CTCTCTTGTTAAGGATACAA+CGG | - | chr3.4:83459751-83459770 | MS.gene013615:intron | 35.0% | |
| CTCTTATGAAAACTCACTTG+TGG | - | chr3.4:83459888-83459907 | MS.gene013615:intron | 35.0% | |
| CTTACCTAAGATTCCTGTTA+TGG | - | chr3.4:83457798-83457817 | MS.gene013615:intron | 35.0% | |
| GAAGAAAAAAGAACTTACGC+CGG | + | chr3.4:83457096-83457115 | None:intergenic | 35.0% | |
| GAAGCTTGGTCATAACAAAT+GGG | + | chr3.4:83458622-83458641 | None:intergenic | 35.0% | |
| GCACCAATAAGAGTAACTTT+GGG | - | chr3.4:83459937-83459956 | MS.gene013615:intron | 35.0% | |
| GCCTTGCATAACACAATAAA+AGG | - | chr3.4:83458245-83458264 | MS.gene013615:CDS | 35.0% | |
| GTTGTATCCTTAACAAGAGA+GGG | + | chr3.4:83459752-83459771 | None:intergenic | 35.0% | |
| TAATTGACTGAAGTGACGAA+AGG | + | chr3.4:83458012-83458031 | None:intergenic | 35.0% | |
| TACTCATAGATCTGAGCATA+TGG | + | chr3.4:83458931-83458950 | None:intergenic | 35.0% | |
| TACTGAAGGAAAATGTCACA+GGG | + | chr3.4:83459272-83459291 | None:intergenic | 35.0% | |
| TATCAGTTCCATAAAGTTCC+TGG | + | chr3.4:83458401-83458420 | None:intergenic | 35.0% | |
| TCAAGAATTGAATTGAGCAG+AGG | + | chr3.4:83456935-83456954 | None:intergenic | 35.0% | |
| TCTGGTGTATGTGTCTATAT+TGG | - | chr3.4:83457678-83457697 | MS.gene013615:intron | 35.0% | |
| TGATGTTTCAAAGTGACTGA+AGG | - | chr3.4:83460367-83460386 | MS.gene013615:CDS | 35.0% | |
| TGTTATGGTCTACCAAACAA+TGG | + | chr3.4:83457939-83457958 | None:intergenic | 35.0% | |
| TTGGAAAAAAGGATGGCAAA+AGG | + | chr3.4:83459149-83459168 | None:intergenic | 35.0% | |
| TTTGGTCCCTAAAATACTGA+AGG | + | chr3.4:83459286-83459305 | None:intergenic | 35.0% | |
| ! | ACAAGGCATTATCTTCAGAT+TGG | + | chr3.4:83459653-83459672 | None:intergenic | 35.0% |
| ! | GCACAATGGATGCATTTTTA+TGG | - | chr3.4:83458451-83458470 | MS.gene013615:intron | 35.0% |
| !! | ACTAATATGCAGGTTGATGA+GGG | - | chr3.4:83458865-83458884 | MS.gene013615:intron | 35.0% |
| !! | ACTGCTAAAAAAGTACTCAC+AGG | + | chr3.4:83460308-83460327 | None:intergenic | 35.0% |
| !! | AGAAGCATTTGTATGCACAA+TGG | - | chr3.4:83458437-83458456 | MS.gene013615:CDS | 35.0% |
| !! | TACTAATATGCAGGTTGATG+AGG | - | chr3.4:83458864-83458883 | MS.gene013615:intron | 35.0% |
| AACAAGAGCGGCATCAATAA+TGG | + | chr3.4:83460282-83460301 | None:intergenic | 40.0% | |
| ACAATCTTTGTCTCCCAACA+AGG | - | chr3.4:83459784-83459803 | MS.gene013615:intron | 40.0% | |
| AGAGCTTGAGAAGGTTCTAT+AGG | + | chr3.4:83458834-83458853 | None:intergenic | 40.0% | |
| ATTTGCATGACATGATCACC+AGG | - | chr3.4:83458380-83458399 | MS.gene013615:CDS | 40.0% | |
| CATGATCACCAGGAACTTTA+TGG | - | chr3.4:83458390-83458409 | MS.gene013615:CDS | 40.0% | |
| CGTAGGCTAGGTTATTTAGT+GGG | - | chr3.4:83457711-83457730 | MS.gene013615:intron | 40.0% | |
| CGTTGTATCCTTAACAAGAG+AGG | + | chr3.4:83459753-83459772 | None:intergenic | 40.0% | |
| CTCAGACAGTTAGACAAAGA+TGG | + | chr3.4:83458518-83458537 | None:intergenic | 40.0% | |
| CTGAAGAAAAGAGCTTGAGA+AGG | + | chr3.4:83458843-83458862 | None:intergenic | 40.0% | |
| CTTCTAATCTTCTGTGCTAG+TGG | - | chr3.4:83458176-83458195 | MS.gene013615:intron | 40.0% | |
| GACAGTAAAACCCAAAGAGT+AGG | + | chr3.4:83458770-83458789 | None:intergenic | 40.0% | |
| GGCTTATTAGGATAAGTGGA+AGG | + | chr3.4:83457059-83457078 | None:intergenic | 40.0% | |
| GGTTGTGCAGAAAAGAACTT+GGG | + | chr3.4:83459597-83459616 | None:intergenic | 40.0% | |
| GTCTAGTGATCCTACTCTTT+GGG | - | chr3.4:83458757-83458776 | MS.gene013615:intron | 40.0% | |
| TAAAAGTGGAGTAGAACCCA+TGG | + | chr3.4:83460104-83460123 | None:intergenic | 40.0% | |
| TAAAGTTCAGTACTTCCCTG+CGG | - | chr3.4:83458032-83458051 | MS.gene013615:intron | 40.0% | |
| TACAGGGACTAAAATCCTGA+TGG | - | chr3.4:83459325-83459344 | MS.gene013615:CDS | 40.0% | |
| TACTGCATGCAAGCTTTCTA+AGG | - | chr3.4:83457204-83457223 | MS.gene013615:intron | 40.0% | |
| TATGCATCCCTCTCTTGTTA+AGG | - | chr3.4:83459742-83459761 | MS.gene013615:intron | 40.0% | |
| TCTGATGAGATTTACCCATC+TGG | + | chr3.4:83459089-83459108 | None:intergenic | 40.0% | |
| TGTCTAGTGATCCTACTCTT+TGG | - | chr3.4:83458756-83458775 | MS.gene013615:intron | 40.0% | |
| TTAGGTAGTTGTAGCTTCAG+GGG | + | chr3.4:83459821-83459840 | None:intergenic | 40.0% | |
| TTAGTGCATGTCTGGATTGA+TGG | + | chr3.4:83457499-83457518 | None:intergenic | 40.0% | |
| ! | AACGGGCTTATTAGGATAAG+TGG | + | chr3.4:83457063-83457082 | None:intergenic | 40.0% |
| ! | ATAATTTGTGCCGATCATCC+TGG | + | chr3.4:83458594-83458613 | None:intergenic | 40.0% |
| ! | ATATTGGTGCTTCATTGCGT+AGG | - | chr3.4:83457694-83457713 | MS.gene013615:intron | 40.0% |
| ! | CTGTTATGGATTGATGCAGT+GGG | - | chr3.4:83457812-83457831 | MS.gene013615:intron | 40.0% |
| ! | TAATTTGTGCCGATCATCCT+GGG | + | chr3.4:83458593-83458612 | None:intergenic | 40.0% |
| ! | TATTTTCCACTCTTTCTCCC+AGG | - | chr3.4:83458573-83458592 | MS.gene013615:intron | 40.0% |
| ! | TTTTCTGTGTAGGCAACTTC+TGG | - | chr3.4:83457169-83457188 | MS.gene013615:intron | 40.0% |
| !! | AGCCTGAAAAGCTTTGAGAT+GGG | + | chr3.4:83457987-83458006 | None:intergenic | 40.0% |
| !! | GCTAAAAAAGTACTCACAGG+CGG | + | chr3.4:83460305-83460324 | None:intergenic | 40.0% |
| AATGCCTTATCCTTCCGTGT+CGG | - | chr3.4:83460410-83460429 | MS.gene013615:CDS | 45.0% | |
| AATGCGTGTTTGACACGTGT+TGG | - | chr3.4:83457557-83457576 | MS.gene013615:intron | 45.0% | |
| ACAGGACTGCTTTCAAGAAG+TGG | + | chr3.4:83458650-83458669 | None:intergenic | 45.0% | |
| ACATCATTTACTCACCGAGC+TGG | - | chr3.4:83458692-83458711 | MS.gene013615:CDS | 45.0% | |
| ACTCTTTCTCCCAGGATGAT+CGG | - | chr3.4:83458581-83458600 | MS.gene013615:intron | 45.0% | |
| AGATAGTGTTGCAACTCGCA+AGG | - | chr3.4:83459964-83459983 | MS.gene013615:intron | 45.0% | |
| AGATGAATTACCGACACGGA+AGG | + | chr3.4:83460423-83460442 | None:intergenic | 45.0% | |
| AGATTACTGATCGTAGCCCT+CGG | + | chr3.4:83458146-83458165 | None:intergenic | 45.0% | |
| ATCAGAGCAGTTGTTGTCAG+AGG | - | chr3.4:83457838-83457857 | MS.gene013615:intron | 45.0% | |
| ATTACCGACACGGAAGGATA+AGG | + | chr3.4:83460417-83460436 | None:intergenic | 45.0% | |
| CCACTGCATCAATCCATAAC+AGG | + | chr3.4:83457814-83457833 | None:intergenic | 45.0% | |
| CGAAGCATGCACTTAGAAAG+TGG | + | chr3.4:83457372-83457391 | None:intergenic | 45.0% | |
| CTATTGGAATCCTCTGAGTG+CGG | - | chr3.4:83460248-83460267 | MS.gene013615:CDS | 45.0% | |
| GCGTAGGCTAGGTTATTTAG+TGG | - | chr3.4:83457710-83457729 | MS.gene013615:intron | 45.0% | |
| GGGTTGTGCAGAAAAGAACT+TGG | + | chr3.4:83459598-83459617 | None:intergenic | 45.0% | |
| TAAGTGGAAGGTGAAGACCT+TGG | + | chr3.4:83457047-83457066 | None:intergenic | 45.0% | |
| TATTGGAATCCTCTGAGTGC+GGG | - | chr3.4:83460249-83460268 | MS.gene013615:CDS | 45.0% | |
| TCTTGAGAATGGCGTTGCTA+TGG | - | chr3.4:83456949-83456968 | MS.gene013615:intron | 45.0% | |
| TGGCATGAGATCAACAGACA+AGG | + | chr3.4:83459670-83459689 | None:intergenic | 45.0% | |
| ! | ATGACGCAAACGGGCTTATT+AGG | + | chr3.4:83457071-83457090 | None:intergenic | 45.0% |
| ! | CCTGTTATGGATTGATGCAG+TGG | - | chr3.4:83457811-83457830 | MS.gene013615:intron | 45.0% |
| ! | GCATGCAAGCTTTCTAAGGA+AGG | - | chr3.4:83457208-83457227 | MS.gene013615:intron | 45.0% |
| ! | GTTGATGAGGGAACTGTATC+TGG | - | chr3.4:83458877-83458896 | MS.gene013615:intron | 45.0% |
| !! | CAGCCTGAAAAGCTTTGAGA+TGG | + | chr3.4:83457988-83458007 | None:intergenic | 45.0% |
| !! | TGCTTTGGGGATGCAGTAAT+AGG | - | chr3.4:83458323-83458342 | MS.gene013615:intron | 45.0% |
| AAGTTCCAGCAAGCCTGTCT+TGG | - | chr3.4:83460195-83460214 | MS.gene013615:intron | 50.0% | |
| AGTTCCAGCAAGCCTGTCTT+GGG | - | chr3.4:83460196-83460215 | MS.gene013615:intron | 50.0% | |
| CAAAGAATGCCACCCAAGAC+AGG | + | chr3.4:83460211-83460230 | None:intergenic | 50.0% | |
| CAGAGGATTCCAATAGGCGT+AGG | + | chr3.4:83460244-83460263 | None:intergenic | 50.0% | |
| CATTTACTCACCGAGCTGGT+AGG | - | chr3.4:83458696-83458715 | MS.gene013615:CDS | 50.0% | |
| CGCACTCAGAGGATTCCAAT+AGG | + | chr3.4:83460250-83460269 | None:intergenic | 50.0% | |
| CGTCAGTGTTGTGTTGTGTC+TGG | - | chr3.4:83457660-83457679 | MS.gene013615:intron | 50.0% | |
| CTGTACCGAGCAGTGCAAAT+CGG | + | chr3.4:83458074-83458093 | None:intergenic | 50.0% | |
| GATCATCCTGGGAGAAAGAG+TGG | + | chr3.4:83458582-83458601 | None:intergenic | 50.0% | |
| TACCCATCTGGCAAAGCTGT+CGG | + | chr3.4:83459077-83459096 | None:intergenic | 50.0% | |
| TGCATCAGTGTTGCAGATCC+TGG | - | chr3.4:83460146-83460165 | MS.gene013615:intron | 50.0% | |
| ! | CGCCCATCTCAAAGCTTTTC+AGG | - | chr3.4:83457982-83458001 | MS.gene013615:intron | 50.0% |
| ! | CTTTTCTGCACAACCCGTGT+GGG | - | chr3.4:83459602-83459621 | MS.gene013615:intron | 50.0% |
| ! | GGATTCCGATTTGCACTGCT+CGG | - | chr3.4:83458066-83458085 | MS.gene013615:intron | 50.0% |
| ! | TCTTTTCTGCACAACCCGTG+TGG | - | chr3.4:83459601-83459620 | MS.gene013615:intron | 50.0% |
| ! | TGTGTAGGCAACTTCTGGCT+TGG | - | chr3.4:83457174-83457193 | MS.gene013615:intron | 50.0% |
| !! | GTGTAGGCAACTTCTGGCTT+GGG | - | chr3.4:83457175-83457194 | MS.gene013615:intron | 50.0% |
| AAGCCCGTTTGCGTCATCAC+CGG | - | chr3.4:83457074-83457093 | MS.gene013615:CDS | 55.0% | |
| AATCCAAAAGCCACTGCCGC+AGG | + | chr3.4:83458051-83458070 | None:intergenic | 55.0% | |
| ACTCACAGGCGGAACAAGAG+CGG | + | chr3.4:83460294-83460313 | None:intergenic | 55.0% | |
| ATCCAAAAGCCACTGCCGCA+GGG | + | chr3.4:83458050-83458069 | None:intergenic | 55.0% | |
| ATCTCCTAGAGTCACAGCCG+AGG | - | chr3.4:83458126-83458145 | MS.gene013615:intron | 55.0% | |
| CACCGACAGCTTTGCCAGAT+GGG | - | chr3.4:83459072-83459091 | MS.gene013615:intron | 55.0% | |
| CCAAAAGCAAGAGCCCACAC+GGG | + | chr3.4:83459618-83459637 | None:intergenic | 55.0% | |
| GCCAAAAGCAAGAGCCCACA+CGG | + | chr3.4:83459619-83459638 | None:intergenic | 55.0% | |
| GGAATCATTCCCGCACTCAG+AGG | + | chr3.4:83460261-83460280 | None:intergenic | 55.0% | |
| GGCGGAGTATGCTCCTTGTT+GGG | + | chr3.4:83459800-83459819 | None:intergenic | 55.0% | |
| GGTAGTTGTAGCTTCAGGGG+CGG | + | chr3.4:83459818-83459837 | None:intergenic | 55.0% | |
| GGTGCTTCATTGCGTAGGCT+AGG | - | chr3.4:83457699-83457718 | MS.gene013615:intron | 55.0% | |
| TCTCCTAGAGTCACAGCCGA+GGG | - | chr3.4:83458127-83458146 | MS.gene013615:intron | 55.0% | |
| ! | ACTGAAGCGCCTACGCCTAT+TGG | - | chr3.4:83460232-83460251 | MS.gene013615:intron | 55.0% |
| ! | TACGCCGGTGATGACGCAAA+CGG | + | chr3.4:83457081-83457100 | None:intergenic | 55.0% |
| CCACCGACAGCTTTGCCAGA+TGG | - | chr3.4:83459071-83459090 | MS.gene013615:intron | 60.0% | |
| CCATCTGGCAAAGCTGTCGG+TGG | + | chr3.4:83459074-83459093 | None:intergenic | 60.0% | |
| GGGCGGAGTATGCTCCTTGT+TGG | + | chr3.4:83459801-83459820 | None:intergenic | 60.0% | |
| TAGCCCTCGGCTGTGACTCT+AGG | + | chr3.4:83458133-83458152 | None:intergenic | 60.0% | |
| TCAGTACTTCCCTGCGGCAG+TGG | - | chr3.4:83458038-83458057 | MS.gene013615:intron | 60.0% | |
| TCCAGCAAGCCTGTCTTGGG+TGG | - | chr3.4:83460199-83460218 | MS.gene013615:intron | 60.0% | |
| ! | ACGCCGGTGATGACGCAAAC+GGG | + | chr3.4:83457080-83457099 | None:intergenic | 60.0% |
| ! | CCCGTGTGGGCTCTTGCTTT+TGG | - | chr3.4:83459615-83459634 | MS.gene013615:intron | 60.0% |
| ! | TTCCCTGCGGCAGTGGCTTT+TGG | - | chr3.4:83458045-83458064 | MS.gene013615:intron | 60.0% |
| GCCACCCAAGACAGGCTTGC+TGG | + | chr3.4:83460203-83460222 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 83456885 | 83460445 | 83456885 | ID=MS.gene013615 |
| chr3.4 | mRNA | 83456885 | 83460445 | 83456885 | ID=MS.gene013615.t1;Parent=MS.gene013615 |
| chr3.4 | exon | 83460233 | 83460445 | 83460233 | ID=MS.gene013615.t1.exon1;Parent=MS.gene013615.t1 |
| chr3.4 | CDS | 83460233 | 83460445 | 83460233 | ID=cds.MS.gene013615.t1;Parent=MS.gene013615.t1 |
| chr3.4 | exon | 83460083 | 83460149 | 83460083 | ID=MS.gene013615.t1.exon2;Parent=MS.gene013615.t1 |
| chr3.4 | CDS | 83460083 | 83460149 | 83460083 | ID=cds.MS.gene013615.t1;Parent=MS.gene013615.t1 |
| chr3.4 | exon | 83459471 | 83459499 | 83459471 | ID=MS.gene013615.t1.exon3;Parent=MS.gene013615.t1 |
| chr3.4 | CDS | 83459471 | 83459499 | 83459471 | ID=cds.MS.gene013615.t1;Parent=MS.gene013615.t1 |
| chr3.4 | exon | 83459172 | 83459380 | 83459172 | ID=MS.gene013615.t1.exon4;Parent=MS.gene013615.t1 |
| chr3.4 | CDS | 83459172 | 83459380 | 83459172 | ID=cds.MS.gene013615.t1;Parent=MS.gene013615.t1 |
| chr3.4 | exon | 83458617 | 83458735 | 83458617 | ID=MS.gene013615.t1.exon5;Parent=MS.gene013615.t1 |
| chr3.4 | CDS | 83458617 | 83458735 | 83458617 | ID=cds.MS.gene013615.t1;Parent=MS.gene013615.t1 |
| chr3.4 | exon | 83458372 | 83458467 | 83458372 | ID=MS.gene013615.t1.exon6;Parent=MS.gene013615.t1 |
| chr3.4 | CDS | 83458372 | 83458467 | 83458372 | ID=cds.MS.gene013615.t1;Parent=MS.gene013615.t1 |
| chr3.4 | exon | 83458212 | 83458287 | 83458212 | ID=MS.gene013615.t1.exon7;Parent=MS.gene013615.t1 |
| chr3.4 | CDS | 83458212 | 83458287 | 83458212 | ID=cds.MS.gene013615.t1;Parent=MS.gene013615.t1 |
| chr3.4 | exon | 83457023 | 83457176 | 83457023 | ID=MS.gene013615.t1.exon8;Parent=MS.gene013615.t1 |
| chr3.4 | CDS | 83457023 | 83457176 | 83457023 | ID=cds.MS.gene013615.t1;Parent=MS.gene013615.t1 |
| chr3.4 | exon | 83456885 | 83456941 | 83456885 | ID=MS.gene013615.t1.exon9;Parent=MS.gene013615.t1 |
| chr3.4 | CDS | 83456885 | 83456941 | 83456885 | ID=cds.MS.gene013615.t1;Parent=MS.gene013615.t1 |
| Gene Sequence |
| Protein sequence |
