Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20415.t1 | XP_013452514.1 | 91.9 | 222 | 18 | 0 | 1 | 222 | 109 | 330 | 8.10E-116 | 426.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20415.t1 | Q0ZPV7 | 55.8 | 217 | 96 | 0 | 1 | 217 | 111 | 327 | 1.7e-66 | 253.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20415.t1 | A0A072UA74 | 91.9 | 222 | 18 | 0 | 1 | 222 | 109 | 330 | 5.8e-116 | 426.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene20415 | 0.801015 | 1.10E-48 | -1.69E-46 |
| MS.gene049222 | MS.gene20415 | 0.817675 | 2.92E-52 | -1.69E-46 |
| MS.gene049356 | MS.gene20415 | 0.824376 | 8.35E-54 | -1.69E-46 |
| MS.gene049369 | MS.gene20415 | 0.818471 | 1.93E-52 | -1.69E-46 |
| MS.gene049396 | MS.gene20415 | 0.80747 | 4.98E-50 | -1.69E-46 |
| MS.gene049488 | MS.gene20415 | 0.800842 | 1.19E-48 | -1.69E-46 |
| MS.gene049609 | MS.gene20415 | 0.843049 | 1.78E-58 | -1.69E-46 |
| MS.gene049805 | MS.gene20415 | 0.846048 | 2.77E-59 | -1.69E-46 |
| MS.gene050499 | MS.gene20415 | 0.815237 | 1.02E-51 | -1.69E-46 |
| MS.gene050502 | MS.gene20415 | 0.809546 | 1.79E-50 | -1.69E-46 |
| MS.gene050520 | MS.gene20415 | 0.830019 | 3.72E-55 | -1.69E-46 |
| MS.gene050593 | MS.gene20415 | 0.841799 | 3.82E-58 | -1.69E-46 |
| MS.gene050670 | MS.gene20415 | 0.823589 | 1.28E-53 | -1.69E-46 |
| MS.gene050675 | MS.gene20415 | 0.81655 | 5.22E-52 | -1.69E-46 |
| MS.gene050699 | MS.gene20415 | 0.804527 | 2.07E-49 | -1.69E-46 |
| MS.gene050747 | MS.gene20415 | 0.840882 | 6.65E-58 | -1.69E-46 |
| MS.gene050772 | MS.gene20415 | 0.832258 | 1.05E-55 | -1.69E-46 |
| MS.gene050868 | MS.gene20415 | 0.814709 | 1.34E-51 | -1.69E-46 |
| MS.gene050871 | MS.gene20415 | 0.817837 | 2.68E-52 | -1.69E-46 |
| MS.gene050950 | MS.gene20415 | 0.841147 | 5.67E-58 | -1.69E-46 |
| MS.gene05105 | MS.gene20415 | 0.813168 | 2.93E-51 | -1.69E-46 |
| MS.gene051167 | MS.gene20415 | -0.808087 | 3.68E-50 | -1.69E-46 |
| MS.gene051387 | MS.gene20415 | 0.856356 | 3.40E-62 | -1.69E-46 |
| MS.gene051692 | MS.gene20415 | 0.806656 | 7.40E-50 | -1.69E-46 |
| MS.gene051694 | MS.gene20415 | 0.80858 | 2.89E-50 | -1.69E-46 |
| MS.gene051838 | MS.gene20415 | 0.815915 | 7.24E-52 | -1.69E-46 |
| MS.gene051858 | MS.gene20415 | 0.813103 | 3.03E-51 | -1.69E-46 |
| MS.gene052318 | MS.gene20415 | 0.803162 | 3.98E-49 | -1.69E-46 |
| MS.gene052346 | MS.gene20415 | 0.823513 | 1.33E-53 | -1.69E-46 |
| MS.gene052421 | MS.gene20415 | 0.828568 | 8.36E-55 | -1.69E-46 |
| MS.gene052501 | MS.gene20415 | 0.804887 | 1.74E-49 | -1.69E-46 |
| MS.gene052505 | MS.gene20415 | 0.808623 | 2.83E-50 | -1.69E-46 |
| MS.gene052615 | MS.gene20415 | 0.870312 | 1.60E-66 | -1.69E-46 |
| MS.gene052999 | MS.gene20415 | 0.804473 | 2.12E-49 | -1.69E-46 |
| MS.gene053203 | MS.gene20415 | 0.80728 | 5.46E-50 | -1.69E-46 |
| MS.gene053207 | MS.gene20415 | 0.844565 | 6.99E-59 | -1.69E-46 |
| MS.gene053213 | MS.gene20415 | 0.839098 | 1.94E-57 | -1.69E-46 |
| MS.gene053286 | MS.gene20415 | 0.83421 | 3.42E-56 | -1.69E-46 |
| MS.gene053436 | MS.gene20415 | 0.818431 | 1.97E-52 | -1.69E-46 |
| MS.gene053449 | MS.gene20415 | 0.833788 | 4.36E-56 | -1.69E-46 |
| MS.gene053480 | MS.gene20415 | 0.806749 | 7.07E-50 | -1.69E-46 |
| MS.gene053574 | MS.gene20415 | 0.83975 | 1.31E-57 | -1.69E-46 |
| MS.gene053579 | MS.gene20415 | 0.812854 | 3.44E-51 | -1.69E-46 |
| MS.gene053626 | MS.gene20415 | 0.833463 | 5.26E-56 | -1.69E-46 |
| MS.gene053632 | MS.gene20415 | 0.812336 | 4.46E-51 | -1.69E-46 |
| MS.gene053813 | MS.gene20415 | 0.834487 | 2.91E-56 | -1.69E-46 |
| MS.gene053824 | MS.gene20415 | 0.821451 | 4.01E-53 | -1.69E-46 |
| MS.gene053912 | MS.gene20415 | 0.819356 | 1.21E-52 | -1.69E-46 |
| MS.gene054107 | MS.gene20415 | 0.820292 | 7.41E-53 | -1.69E-46 |
| MS.gene054408 | MS.gene20415 | 0.810908 | 9.12E-51 | -1.69E-46 |
| MS.gene054486 | MS.gene20415 | 0.842105 | 3.17E-58 | -1.69E-46 |
| MS.gene054595 | MS.gene20415 | 0.827865 | 1.24E-54 | -1.69E-46 |
| MS.gene054600 | MS.gene20415 | 0.802391 | 5.74E-49 | -1.69E-46 |
| MS.gene05494 | MS.gene20415 | 0.833453 | 5.29E-56 | -1.69E-46 |
| MS.gene05505 | MS.gene20415 | 0.845841 | 3.16E-59 | -1.69E-46 |
| MS.gene055206 | MS.gene20415 | 0.820492 | 6.67E-53 | -1.69E-46 |
| MS.gene055224 | MS.gene20415 | 0.813344 | 2.68E-51 | -1.69E-46 |
| MS.gene055486 | MS.gene20415 | 0.811661 | 6.26E-51 | -1.69E-46 |
| MS.gene055502 | MS.gene20415 | 0.802428 | 5.64E-49 | -1.69E-46 |
| MS.gene055577 | MS.gene20415 | 0.824054 | 9.94E-54 | -1.69E-46 |
| MS.gene055722 | MS.gene20415 | 0.818049 | 2.40E-52 | -1.69E-46 |
| MS.gene055909 | MS.gene20415 | 0.850111 | 2.10E-60 | -1.69E-46 |
| MS.gene055911 | MS.gene20415 | 0.855496 | 6.07E-62 | -1.69E-46 |
| MS.gene05592 | MS.gene20415 | 0.821544 | 3.82E-53 | -1.69E-46 |
| MS.gene055941 | MS.gene20415 | 0.841407 | 4.84E-58 | -1.69E-46 |
| MS.gene05601 | MS.gene20415 | 0.810143 | 1.33E-50 | -1.69E-46 |
| MS.gene056346 | MS.gene20415 | 0.80509 | 1.58E-49 | -1.69E-46 |
| MS.gene056422 | MS.gene20415 | 0.805083 | 1.58E-49 | -1.69E-46 |
| MS.gene056448 | MS.gene20415 | 0.814673 | 1.37E-51 | -1.69E-46 |
| MS.gene056487 | MS.gene20415 | 0.803777 | 2.96E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene20415 | 0.836678 | 8.13E-57 | -1.69E-46 |
| MS.gene056657 | MS.gene20415 | 0.800898 | 1.16E-48 | -1.69E-46 |
| MS.gene05666 | MS.gene20415 | 0.833336 | 5.66E-56 | -1.69E-46 |
| MS.gene056877 | MS.gene20415 | 0.801613 | 8.29E-49 | -1.69E-46 |
| MS.gene057076 | MS.gene20415 | 0.842831 | 2.03E-58 | -1.69E-46 |
| MS.gene057086 | MS.gene20415 | 0.817993 | 2.47E-52 | -1.69E-46 |
| MS.gene057124 | MS.gene20415 | 0.8078 | 4.23E-50 | -1.69E-46 |
| MS.gene057146 | MS.gene20415 | 0.809501 | 1.83E-50 | -1.69E-46 |
| MS.gene057331 | MS.gene20415 | 0.811443 | 6.98E-51 | -1.69E-46 |
| MS.gene057416 | MS.gene20415 | 0.832689 | 8.19E-56 | -1.69E-46 |
| MS.gene057734 | MS.gene20415 | 0.812873 | 3.41E-51 | -1.69E-46 |
| MS.gene057823 | MS.gene20415 | 0.810106 | 1.36E-50 | -1.69E-46 |
| MS.gene057856 | MS.gene20415 | 0.818108 | 2.33E-52 | -1.69E-46 |
| MS.gene05787 | MS.gene20415 | 0.80897 | 2.38E-50 | -1.69E-46 |
| MS.gene057926 | MS.gene20415 | 0.8119 | 5.55E-51 | -1.69E-46 |
| MS.gene058006 | MS.gene20415 | 0.816788 | 4.62E-52 | -1.69E-46 |
| MS.gene058019 | MS.gene20415 | 0.80654 | 7.83E-50 | -1.69E-46 |
| MS.gene058120 | MS.gene20415 | 0.808748 | 2.66E-50 | -1.69E-46 |
| MS.gene058130 | MS.gene20415 | 0.839485 | 1.54E-57 | -1.69E-46 |
| MS.gene058157 | MS.gene20415 | 0.805373 | 1.38E-49 | -1.69E-46 |
| MS.gene058323 | MS.gene20415 | 0.810728 | 9.98E-51 | -1.69E-46 |
| MS.gene05837 | MS.gene20415 | 0.820118 | 8.12E-53 | -1.69E-46 |
| MS.gene058700 | MS.gene20415 | 0.815541 | 8.77E-52 | -1.69E-46 |
| MS.gene058948 | MS.gene20415 | 0.838065 | 3.59E-57 | -1.69E-46 |
| MS.gene05934 | MS.gene20415 | 0.816537 | 5.26E-52 | -1.69E-46 |
| MS.gene059366 | MS.gene20415 | 0.802724 | 4.90E-49 | -1.69E-46 |
| MS.gene059367 | MS.gene20415 | 0.841691 | 4.08E-58 | -1.69E-46 |
| MS.gene059368 | MS.gene20415 | 0.848839 | 4.75E-60 | -1.69E-46 |
| MS.gene059674 | MS.gene20415 | 0.839662 | 1.39E-57 | -1.69E-46 |
| MS.gene059680 | MS.gene20415 | 0.80716 | 5.79E-50 | -1.69E-46 |
| MS.gene059711 | MS.gene20415 | 0.818752 | 1.66E-52 | -1.69E-46 |
| MS.gene059718 | MS.gene20415 | 0.820156 | 7.96E-53 | -1.69E-46 |
| MS.gene059902 | MS.gene20415 | 0.801987 | 6.95E-49 | -1.69E-46 |
| MS.gene060372 | MS.gene20415 | 0.808485 | 3.03E-50 | -1.69E-46 |
| MS.gene060482 | MS.gene20415 | 0.823435 | 1.39E-53 | -1.69E-46 |
| MS.gene060485 | MS.gene20415 | 0.806141 | 9.50E-50 | -1.69E-46 |
| MS.gene060778 | MS.gene20415 | 0.817994 | 2.47E-52 | -1.69E-46 |
| MS.gene060804 | MS.gene20415 | 0.81777 | 2.78E-52 | -1.69E-46 |
| MS.gene060835 | MS.gene20415 | 0.843971 | 1.01E-58 | -1.69E-46 |
| MS.gene060837 | MS.gene20415 | 0.847197 | 1.35E-59 | -1.69E-46 |
| MS.gene06092 | MS.gene20415 | 0.80484 | 1.78E-49 | -1.69E-46 |
| MS.gene061041 | MS.gene20415 | 0.82263 | 2.14E-53 | -1.69E-46 |
| MS.gene061134 | MS.gene20415 | 0.807343 | 5.30E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene019398 | MS.gene20415 | PPI |
| MS.gene37505 | MS.gene20415 | PPI |
| MS.gene23638 | MS.gene20415 | PPI |
| MS.gene87835 | MS.gene20415 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20415.t1 | MTR_6g464320 | 91.892 | 222 | 18 | 0 | 1 | 222 | 109 | 330 | 3.18e-153 | 428 |
| MS.gene20415.t1 | MTR_6g464280 | 85.321 | 218 | 32 | 0 | 1 | 218 | 108 | 325 | 4.04e-134 | 380 |
| MS.gene20415.t1 | MTR_6g464510 | 74.312 | 218 | 55 | 1 | 1 | 218 | 111 | 327 | 5.65e-115 | 331 |
| MS.gene20415.t1 | MTR_1g102160 | 56.561 | 221 | 91 | 3 | 1 | 217 | 106 | 325 | 1.16e-82 | 249 |
| MS.gene20415.t1 | MTR_1g102170 | 53.704 | 216 | 99 | 1 | 1 | 216 | 123 | 337 | 1.47e-77 | 236 |
| MS.gene20415.t1 | MTR_0007s0520 | 54.054 | 222 | 96 | 4 | 1 | 218 | 106 | 325 | 8.06e-75 | 229 |
| MS.gene20415.t1 | MTR_8g035520 | 51.528 | 229 | 98 | 4 | 1 | 222 | 107 | 329 | 2.47e-71 | 220 |
| MS.gene20415.t1 | MTR_6g464120 | 53.810 | 210 | 94 | 3 | 1 | 209 | 110 | 317 | 1.18e-66 | 214 |
| MS.gene20415.t1 | MTR_8g035540 | 50.446 | 224 | 98 | 4 | 1 | 217 | 99 | 316 | 1.29e-66 | 208 |
| MS.gene20415.t1 | MTR_0007s0480 | 54.651 | 172 | 72 | 4 | 51 | 218 | 2 | 171 | 8.00e-54 | 171 |
| MS.gene20415.t1 | MTR_8g035500 | 39.640 | 222 | 123 | 4 | 1 | 217 | 102 | 317 | 2.33e-52 | 171 |
| MS.gene20415.t1 | MTR_1g111280 | 37.607 | 234 | 123 | 6 | 5 | 222 | 120 | 346 | 8.11e-38 | 134 |
| MS.gene20415.t1 | MTR_7g107040 | 37.662 | 231 | 119 | 9 | 1 | 217 | 97 | 316 | 9.29e-36 | 129 |
| MS.gene20415.t1 | MTR_7g406880 | 34.615 | 234 | 127 | 8 | 6 | 218 | 122 | 350 | 7.26e-35 | 127 |
| MS.gene20415.t1 | MTR_6g065430 | 37.879 | 198 | 116 | 3 | 4 | 201 | 120 | 310 | 3.14e-34 | 125 |
| MS.gene20415.t1 | MTR_4g050140 | 32.479 | 234 | 133 | 4 | 1 | 220 | 96 | 318 | 1.43e-32 | 120 |
| MS.gene20415.t1 | MTR_6g065120 | 42.143 | 140 | 75 | 3 | 5 | 141 | 129 | 265 | 3.75e-29 | 111 |
| MS.gene20415.t1 | MTR_6g065270 | 42.857 | 133 | 73 | 2 | 5 | 137 | 129 | 258 | 9.86e-29 | 110 |
| MS.gene20415.t1 | MTR_6g065110 | 34.884 | 215 | 132 | 5 | 5 | 218 | 128 | 335 | 1.34e-28 | 110 |
| MS.gene20415.t1 | MTR_6g065400 | 34.404 | 218 | 129 | 6 | 5 | 218 | 127 | 334 | 2.96e-27 | 106 |
| MS.gene20415.t1 | MTR_1g089310 | 36.634 | 202 | 116 | 5 | 1 | 201 | 133 | 323 | 5.12e-27 | 106 |
| MS.gene20415.t1 | MTR_1g089310 | 36.634 | 202 | 116 | 5 | 1 | 201 | 149 | 339 | 7.42e-27 | 105 |
| MS.gene20415.t1 | MTR_7g056207 | 32.889 | 225 | 132 | 8 | 1 | 218 | 135 | 347 | 1.53e-26 | 105 |
| MS.gene20415.t1 | MTR_6g065370 | 33.945 | 218 | 130 | 6 | 5 | 218 | 127 | 334 | 2.65e-26 | 103 |
| MS.gene20415.t1 | MTR_1g012430 | 34.078 | 179 | 111 | 4 | 6 | 183 | 98 | 270 | 3.32e-26 | 103 |
| MS.gene20415.t1 | MTR_7g093950 | 33.937 | 221 | 136 | 6 | 1 | 218 | 134 | 347 | 5.11e-26 | 103 |
| MS.gene20415.t1 | MTR_4g086510 | 30.702 | 228 | 136 | 8 | 1 | 218 | 103 | 318 | 8.18e-25 | 99.8 |
| MS.gene20415.t1 | MTR_4g086480 | 33.028 | 218 | 121 | 8 | 11 | 217 | 115 | 318 | 4.17e-24 | 97.8 |
| MS.gene20415.t1 | MTR_1g082210 | 34.536 | 194 | 113 | 5 | 6 | 197 | 138 | 319 | 3.22e-22 | 93.2 |
| MS.gene20415.t1 | MTR_3g101420 | 33.482 | 224 | 123 | 8 | 8 | 218 | 105 | 315 | 4.22e-22 | 92.4 |
| MS.gene20415.t1 | MTR_6g065340 | 38.346 | 133 | 63 | 3 | 5 | 137 | 138 | 251 | 9.78e-22 | 91.7 |
| MS.gene20415.t1 | MTR_4g086470 | 33.708 | 178 | 101 | 6 | 11 | 183 | 114 | 279 | 5.34e-21 | 89.4 |
| MS.gene20415.t1 | MTR_3g012440 | 31.414 | 191 | 120 | 4 | 1 | 186 | 116 | 300 | 1.11e-20 | 89.0 |
| MS.gene20415.t1 | MTR_1g105020 | 31.441 | 229 | 138 | 8 | 1 | 217 | 101 | 322 | 2.36e-19 | 85.1 |
| MS.gene20415.t1 | MTR_4g086540 | 30.594 | 219 | 111 | 6 | 8 | 218 | 117 | 302 | 7.42e-19 | 83.6 |
| MS.gene20415.t1 | MTR_6g022710 | 32.184 | 174 | 84 | 3 | 1 | 140 | 188 | 361 | 2.44e-17 | 80.1 |
| MS.gene20415.t1 | MTR_5g005850 | 28.509 | 228 | 133 | 8 | 8 | 217 | 113 | 328 | 2.79e-16 | 76.6 |
| MS.gene20415.t1 | MTR_7g051020 | 28.634 | 227 | 135 | 9 | 7 | 217 | 110 | 325 | 3.88e-16 | 76.3 |
| MS.gene20415.t1 | MTR_1g104930 | 29.255 | 188 | 114 | 7 | 6 | 183 | 106 | 284 | 5.81e-15 | 72.8 |
| MS.gene20415.t1 | MTR_1g104933 | 30.526 | 190 | 105 | 9 | 6 | 183 | 104 | 278 | 2.38e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20415.t1 | AT5G62180 | 49.770 | 217 | 108 | 1 | 1 | 217 | 108 | 323 | 6.56e-72 | 222 |
| MS.gene20415.t1 | AT2G45600 | 45.175 | 228 | 112 | 4 | 1 | 219 | 94 | 317 | 2.93e-60 | 192 |
| MS.gene20415.t1 | AT2G45610 | 41.964 | 224 | 118 | 3 | 1 | 218 | 107 | 324 | 4.61e-58 | 186 |
| MS.gene20415.t1 | AT5G16080 | 36.923 | 195 | 105 | 5 | 1 | 186 | 120 | 305 | 3.54e-33 | 122 |
| MS.gene20415.t1 | AT5G06570 | 33.898 | 236 | 131 | 9 | 1 | 221 | 104 | 329 | 7.88e-31 | 115 |
| MS.gene20415.t1 | AT5G06570 | 33.898 | 236 | 131 | 9 | 1 | 221 | 104 | 329 | 7.88e-31 | 115 |
| MS.gene20415.t1 | AT5G06570 | 33.898 | 236 | 131 | 9 | 1 | 221 | 119 | 344 | 1.15e-30 | 115 |
| MS.gene20415.t1 | AT5G06570 | 33.898 | 236 | 131 | 9 | 1 | 221 | 119 | 344 | 1.15e-30 | 115 |
| MS.gene20415.t1 | AT1G68620 | 36.444 | 225 | 121 | 8 | 6 | 221 | 122 | 333 | 1.00e-29 | 113 |
| MS.gene20415.t1 | AT5G23530 | 42.754 | 138 | 75 | 2 | 1 | 137 | 115 | 249 | 2.17e-28 | 109 |
| MS.gene20415.t1 | AT3G63010 | 35.204 | 196 | 113 | 5 | 8 | 201 | 141 | 324 | 1.22e-23 | 97.4 |
| MS.gene20415.t1 | AT1G47480 | 28.947 | 228 | 143 | 7 | 1 | 222 | 100 | 314 | 7.93e-23 | 94.4 |
| MS.gene20415.t1 | AT5G27320 | 41.791 | 134 | 70 | 3 | 7 | 139 | 138 | 264 | 2.89e-22 | 93.2 |
| MS.gene20415.t1 | AT1G19190 | 32.258 | 186 | 109 | 6 | 3 | 183 | 102 | 275 | 7.55e-20 | 86.3 |
| MS.gene20415.t1 | AT3G05120 | 40.000 | 135 | 73 | 3 | 6 | 139 | 139 | 266 | 3.24e-19 | 85.1 |
| MS.gene20415.t1 | AT1G49640 | 40.860 | 93 | 52 | 2 | 4 | 96 | 105 | 194 | 8.84e-19 | 83.6 |
| MS.gene20415.t1 | AT5G14310 | 30.726 | 179 | 86 | 2 | 1 | 141 | 179 | 357 | 1.34e-18 | 84.0 |
| MS.gene20415.t1 | AT3G27320 | 30.556 | 180 | 83 | 5 | 1 | 140 | 194 | 371 | 6.96e-17 | 79.0 |
| MS.gene20415.t1 | AT3G27320 | 30.556 | 180 | 83 | 5 | 1 | 140 | 162 | 339 | 7.14e-17 | 79.0 |
| MS.gene20415.t1 | AT3G48700 | 31.792 | 173 | 104 | 5 | 8 | 172 | 109 | 275 | 1.32e-16 | 77.4 |
| MS.gene20415.t1 | AT3G48690 | 29.032 | 186 | 113 | 6 | 8 | 183 | 106 | 282 | 1.61e-14 | 71.6 |
| MS.gene20415.t1 | AT1G49660 | 33.000 | 100 | 60 | 2 | 4 | 98 | 103 | 200 | 1.18e-11 | 63.5 |
| MS.gene20415.t1 | AT1G49650 | 31.683 | 101 | 61 | 3 | 1 | 96 | 156 | 253 | 1.82e-11 | 63.2 |
Find 58 sgRNAs with CRISPR-Local
Find 65 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAATTTCTTTGCTTTAGA+TGG | 0.233057 | 6.4:+39699897 | None:intergenic |
| CTATTCTAAGTGTTACCTAA+TGG | 0.334421 | 6.4:-39700357 | MS.gene20415:CDS |
| CTAACACACAAAGGAAAATC+TGG | 0.360562 | 6.4:+39700176 | None:intergenic |
| TAAGGGTGTGGATGTTGTTA+AGG | 0.362095 | 6.4:-39699961 | MS.gene20415:CDS |
| TGGAAGCATTGAGTTTGATT+AGG | 0.366794 | 6.4:-39700415 | MS.gene20415:CDS |
| TATTCTAAGTGTTACCTAAT+GGG | 0.394316 | 6.4:-39700356 | MS.gene20415:CDS |
| TGGGAGTTGGCATTACCTAT+TGG | 0.407630 | 6.4:-39700143 | MS.gene20415:CDS |
| CATCATATGCCGCCGGTAAC+CGG | 0.417101 | 6.4:+39700444 | None:intergenic |
| CGCACCGGAGCACCGGTTAC+CGG | 0.420881 | 6.4:-39700456 | MS.gene20415:CDS |
| CAACTCTGATTCAGTCCTAT+TGG | 0.435907 | 6.4:+39700214 | None:intergenic |
| GTGTGTTAGTGATTTGTGTT+GGG | 0.440638 | 6.4:-39700162 | MS.gene20415:CDS |
| TGATCACGATCAACTCCAAT+AGG | 0.440937 | 6.4:+39700128 | None:intergenic |
| GGATCAAGGGTGGAGGCTAT+TGG | 0.445047 | 6.4:-39700048 | MS.gene20415:CDS |
| CTCCAGCACTATTACCCATT+AGG | 0.447172 | 6.4:+39700342 | None:intergenic |
| TGTCAACGGTGGGGATCTAT+TGG | 0.468178 | 6.4:-39700021 | MS.gene20415:CDS |
| GCCGCCGGTAACCGGTGCTC+CGG | 0.468450 | 6.4:+39700452 | None:intergenic |
| TGTGTGTTAGTGATTTGTGT+TGG | 0.479150 | 6.4:-39700163 | MS.gene20415:CDS |
| TAGTGATTTGTGTTGGGAGT+TGG | 0.482769 | 6.4:-39700156 | MS.gene20415:CDS |
| TCAACATCAATCTCAACCAT+TGG | 0.489151 | 6.4:+39700092 | None:intergenic |
| TACCTAATGGGTAATAGTGC+TGG | 0.489408 | 6.4:-39700344 | MS.gene20415:CDS |
| GCTACCATTGCATACCATGC+AGG | 0.493871 | 6.4:-39700320 | MS.gene20415:CDS |
| TTAGATAAGATAAAGGATCA+AGG | 0.495282 | 6.4:-39700062 | MS.gene20415:CDS |
| AAAAGAGTTGGTGCAATTGA+TGG | 0.507179 | 6.4:-39699988 | MS.gene20415:CDS |
| ATCAACCCTTGGATCTTCAA+TGG | 0.512904 | 6.4:+39700263 | None:intergenic |
| TGTTGAAGCAGTTGTCGCCT+CGG | 0.513561 | 6.4:-39700492 | MS.gene20415:CDS |
| GGTGCAATTGATGGAGGATA+AGG | 0.517686 | 6.4:-39699979 | MS.gene20415:CDS |
| TTTCAAGAAGATGGTTGCCA+TGG | 0.523109 | 6.4:-39699936 | MS.gene20415:CDS |
| GAAATTTATTGAGTTAGTGA+AGG | 0.523975 | 6.4:-39699883 | MS.gene20415:CDS |
| TTAGGTCAAGCAAAGATGAA+TGG | 0.530318 | 6.4:-39700397 | MS.gene20415:CDS |
| ATCGCCTCGCACCGGAGCAC+CGG | 0.536876 | 6.4:-39700463 | MS.gene20415:CDS |
| TTTGAGCCATTGAAGATCCA+AGG | 0.542044 | 6.4:-39700269 | MS.gene20415:CDS |
| AAATTTATTGAGTTAGTGAA+GGG | 0.543509 | 6.4:-39699882 | MS.gene20415:CDS |
| TAGATAAGATAAAGGATCAA+GGG | 0.557087 | 6.4:-39700061 | MS.gene20415:CDS |
| TATTGGTGAGTGTCAACGGT+GGG | 0.568537 | 6.4:-39700031 | MS.gene20415:CDS |
| GGCGGCATATGATGATGCTA+TGG | 0.579015 | 6.4:-39700435 | MS.gene20415:CDS |
| TTGAGCCATTGAAGATCCAA+GGG | 0.580380 | 6.4:-39700268 | MS.gene20415:CDS |
| GTAACCGGTGCTCCGGTGCG+AGG | 0.582296 | 6.4:+39700459 | None:intergenic |
| ATTGATGGAGGATAAGGGTG+TGG | 0.586811 | 6.4:-39699973 | MS.gene20415:CDS |
| ATAAGATAAAGGATCAAGGG+TGG | 0.587545 | 6.4:-39700058 | MS.gene20415:CDS |
| GTGCAATTGATGGAGGATAA+GGG | 0.588351 | 6.4:-39699978 | MS.gene20415:CDS |
| GTTGACGCAATATCAACCCT+TGG | 0.594787 | 6.4:+39700252 | None:intergenic |
| CAACTACACGTAGCCCTGCA+TGG | 0.595917 | 6.4:+39700306 | None:intergenic |
| AGATAAAGGATCAAGGGTGG+AGG | 0.597761 | 6.4:-39700055 | MS.gene20415:CDS |
| AGGCTATTGGTGAGTGTCAA+CGG | 0.603086 | 6.4:-39700035 | MS.gene20415:CDS |
| GGTGGATTATCGCCTCGCAC+CGG | 0.611850 | 6.4:-39700471 | MS.gene20415:CDS |
| GGTTGATCGTGCAAAAGAGT+TGG | 0.615439 | 6.4:-39700000 | MS.gene20415:CDS |
| CACAAATCACTAACACACAA+AGG | 0.622904 | 6.4:+39700167 | None:intergenic |
| CTACCATTGCATACCATGCA+GGG | 0.623078 | 6.4:-39700319 | MS.gene20415:CDS |
| ATTGGTGAGTGTCAACGGTG+GGG | 0.628502 | 6.4:-39700030 | MS.gene20415:CDS |
| TGAAGCAGTTGTCGCCTCGG+TGG | 0.630808 | 6.4:-39700489 | MS.gene20415:CDS |
| TAGCCCTGCATGGTATGCAA+TGG | 0.633352 | 6.4:+39700316 | None:intergenic |
| AGAGTTGGTGCAATTGATGG+AGG | 0.635224 | 6.4:-39699985 | MS.gene20415:CDS |
| ATAGCATCATCATATGCCGC+CGG | 0.638454 | 6.4:+39700437 | None:intergenic |
| ACCGGAGCACCGGTTACCGG+CGG | 0.650002 | 6.4:-39700453 | MS.gene20415:CDS |
| GTCTAATTAAGCATCGAACG+TGG | 0.657460 | 6.4:+39699851 | None:intergenic |
| TCATGAGTATTGCAATCCAA+TGG | 0.662746 | 6.4:-39700108 | MS.gene20415:CDS |
| CTATTGGTGAGTGTCAACGG+TGG | 0.715797 | 6.4:-39700032 | MS.gene20415:CDS |
| TGCGAGGCGATAATCCACCG+AGG | 0.794949 | 6.4:+39700475 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAAAATTAGATAAGATAA+AGG | - | chr6.4:39700291-39700310 | MS.gene20415:CDS | 15.0% |
| !! | AAATTTATTGAGTTAGTGAA+GGG | - | chr6.4:39700478-39700497 | MS.gene20415:CDS | 20.0% |
| !!! | ATAAATTTCTTTGCTTTAGA+TGG | + | chr6.4:39700466-39700485 | None:intergenic | 20.0% |
| ! | GAAATTTATTGAGTTAGTGA+AGG | - | chr6.4:39700477-39700496 | MS.gene20415:CDS | 25.0% |
| ! | TAGATAAGATAAAGGATCAA+GGG | - | chr6.4:39700299-39700318 | MS.gene20415:CDS | 25.0% |
| ! | TATTCTAAGTGTTACCTAAT+GGG | - | chr6.4:39700004-39700023 | MS.gene20415:CDS | 25.0% |
| ! | TTAGATAAGATAAAGGATCA+AGG | - | chr6.4:39700298-39700317 | MS.gene20415:CDS | 25.0% |
| CTATTCTAAGTGTTACCTAA+TGG | - | chr6.4:39700003-39700022 | MS.gene20415:CDS | 30.0% | |
| !! | GTTAAGGATTTTCAAGAAGA+TGG | - | chr6.4:39700415-39700434 | MS.gene20415:CDS | 30.0% |
| !!! | ATATTGCGTCAACCATTTTT+TGG | - | chr6.4:39700118-39700137 | MS.gene20415:CDS | 30.0% |
| ATAAGATAAAGGATCAAGGG+TGG | - | chr6.4:39700302-39700321 | MS.gene20415:CDS | 35.0% | |
| CACAAATCACTAACACACAA+AGG | + | chr6.4:39700196-39700215 | None:intergenic | 35.0% | |
| CTAACACACAAAGGAAAATC+TGG | + | chr6.4:39700187-39700206 | None:intergenic | 35.0% | |
| TCAACATCAATCTCAACCAT+TGG | + | chr6.4:39700271-39700290 | None:intergenic | 35.0% | |
| TTAGGTCAAGCAAAGATGAA+TGG | - | chr6.4:39699963-39699982 | MS.gene20415:CDS | 35.0% | |
| ! | GTGTGTTAGTGATTTGTGTT+GGG | - | chr6.4:39700198-39700217 | MS.gene20415:CDS | 35.0% |
| ! | TCATGAGTATTGCAATCCAA+TGG | - | chr6.4:39700252-39700271 | MS.gene20415:CDS | 35.0% |
| ! | TGTGTGTTAGTGATTTGTGT+TGG | - | chr6.4:39700197-39700216 | MS.gene20415:CDS | 35.0% |
| !! | AAAAGAGTTGGTGCAATTGA+TGG | - | chr6.4:39700372-39700391 | MS.gene20415:CDS | 35.0% |
| !! | TGGAAGCATTGAGTTTGATT+AGG | - | chr6.4:39699945-39699964 | MS.gene20415:CDS | 35.0% |
| ATCAACCCTTGGATCTTCAA+TGG | + | chr6.4:39700100-39700119 | None:intergenic | 40.0% | |
| CAACTCTGATTCAGTCCTAT+TGG | + | chr6.4:39700149-39700168 | None:intergenic | 40.0% | |
| CTATTGGTCCCACCAAAAAA+TGG | + | chr6.4:39700133-39700152 | None:intergenic | 40.0% | |
| GCTCAAAAAACTCAACTCCA+TGG | + | chr6.4:39700444-39700463 | None:intergenic | 40.0% | |
| GTGCAATTGATGGAGGATAA+GGG | - | chr6.4:39700382-39700401 | MS.gene20415:CDS | 40.0% | |
| TGATCACGATCAACTCCAAT+AGG | + | chr6.4:39700235-39700254 | None:intergenic | 40.0% | |
| TTGAGCCATTGAAGATCCAA+GGG | - | chr6.4:39700092-39700111 | MS.gene20415:CDS | 40.0% | |
| TTTCAAGAAGATGGTTGCCA+TGG | - | chr6.4:39700424-39700443 | MS.gene20415:CDS | 40.0% | |
| TTTGAGCCATTGAAGATCCA+AGG | - | chr6.4:39700091-39700110 | MS.gene20415:CDS | 40.0% | |
| ! | TAAGGGTGTGGATGTTGTTA+AGG | - | chr6.4:39700399-39700418 | MS.gene20415:CDS | 40.0% |
| ! | TACCTAATGGGTAATAGTGC+TGG | - | chr6.4:39700016-39700035 | MS.gene20415:CDS | 40.0% |
| ! | TAGTGATTTGTGTTGGGAGT+TGG | - | chr6.4:39700204-39700223 | MS.gene20415:CDS | 40.0% |
| !!! | CATTTTTTGGTGGGACCAAT+AGG | - | chr6.4:39700131-39700150 | MS.gene20415:CDS | 40.0% |
| !!! | TGCGTCAACCATTTTTTGGT+GGG | - | chr6.4:39700122-39700141 | MS.gene20415:CDS | 40.0% |
| !!! | TTGCGTCAACCATTTTTTGG+TGG | - | chr6.4:39700121-39700140 | MS.gene20415:CDS | 40.0% |
| AGATAAAGGATCAAGGGTGG+AGG | - | chr6.4:39700305-39700324 | MS.gene20415:CDS | 45.0% | |
| AGGCTATTGGTGAGTGTCAA+CGG | - | chr6.4:39700325-39700344 | MS.gene20415:CDS | 45.0% | |
| ATAGCATCATCATATGCCGC+CGG | + | chr6.4:39699926-39699945 | None:intergenic | 45.0% | |
| ATTGATGGAGGATAAGGGTG+TGG | - | chr6.4:39700387-39700406 | MS.gene20415:CDS | 45.0% | |
| CTACCATTGCATACCATGCA+GGG | - | chr6.4:39700041-39700060 | MS.gene20415:CDS | 45.0% | |
| CTCCAGCACTATTACCCATT+AGG | + | chr6.4:39700021-39700040 | None:intergenic | 45.0% | |
| GGTGCAATTGATGGAGGATA+AGG | - | chr6.4:39700381-39700400 | MS.gene20415:CDS | 45.0% | |
| GGTTGATCGTGCAAAAGAGT+TGG | - | chr6.4:39700360-39700379 | MS.gene20415:CDS | 45.0% | |
| GTTGACGCAATATCAACCCT+TGG | + | chr6.4:39700111-39700130 | None:intergenic | 45.0% | |
| TATTGGTGAGTGTCAACGGT+GGG | - | chr6.4:39700329-39700348 | MS.gene20415:CDS | 45.0% | |
| TGGGAGTTGGCATTACCTAT+TGG | - | chr6.4:39700217-39700236 | MS.gene20415:CDS | 45.0% | |
| !! | AGAGTTGGTGCAATTGATGG+AGG | - | chr6.4:39700375-39700394 | MS.gene20415:CDS | 45.0% |
| ATTGGTGAGTGTCAACGGTG+GGG | - | chr6.4:39700330-39700349 | MS.gene20415:CDS | 50.0% | |
| CTATTGGTGAGTGTCAACGG+TGG | - | chr6.4:39700328-39700347 | MS.gene20415:CDS | 50.0% | |
| GCTACCATTGCATACCATGC+AGG | - | chr6.4:39700040-39700059 | MS.gene20415:CDS | 50.0% | |
| TAGCCCTGCATGGTATGCAA+TGG | + | chr6.4:39700047-39700066 | None:intergenic | 50.0% | |
| TGTCAACGGTGGGGATCTAT+TGG | - | chr6.4:39700339-39700358 | MS.gene20415:CDS | 50.0% | |
| TGTTGAAGCAGTTGTCGCCT+CGG | - | chr6.4:39699868-39699887 | MS.gene20415:CDS | 50.0% | |
| ! | GGCGGCATATGATGATGCTA+TGG | - | chr6.4:39699925-39699944 | MS.gene20415:CDS | 50.0% |
| CAACTACACGTAGCCCTGCA+TGG | + | chr6.4:39700057-39700076 | None:intergenic | 55.0% | |
| CATCATATGCCGCCGGTAAC+CGG | + | chr6.4:39699919-39699938 | None:intergenic | 55.0% | |
| GGATCAAGGGTGGAGGCTAT+TGG | - | chr6.4:39700312-39700331 | MS.gene20415:CDS | 55.0% | |
| TGAAGCAGTTGTCGCCTCGG+TGG | - | chr6.4:39699871-39699890 | MS.gene20415:CDS | 60.0% | |
| TGCGAGGCGATAATCCACCG+AGG | + | chr6.4:39699888-39699907 | None:intergenic | 60.0% | |
| !! | GGTGGATTATCGCCTCGCAC+CGG | - | chr6.4:39699889-39699908 | MS.gene20415:CDS | 60.0% |
| ATCGCCTCGCACCGGAGCAC+CGG | - | chr6.4:39699897-39699916 | MS.gene20415:CDS | 70.0% | |
| GTAACCGGTGCTCCGGTGCG+AGG | + | chr6.4:39699904-39699923 | None:intergenic | 70.0% | |
| !! | ACCGGAGCACCGGTTACCGG+CGG | - | chr6.4:39699907-39699926 | MS.gene20415:CDS | 70.0% |
| !! | CGCACCGGAGCACCGGTTAC+CGG | - | chr6.4:39699904-39699923 | MS.gene20415:CDS | 70.0% |
| GCCGCCGGTAACCGGTGCTC+CGG | + | chr6.4:39699911-39699930 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 39699857 | 39700525 | 39699857 | ID=MS.gene20415 |
| chr6.4 | mRNA | 39699857 | 39700525 | 39699857 | ID=MS.gene20415.t1;Parent=MS.gene20415 |
| chr6.4 | exon | 39699857 | 39700525 | 39699857 | ID=MS.gene20415.t1.exon1;Parent=MS.gene20415.t1 |
| chr6.4 | CDS | 39699857 | 39700525 | 39699857 | ID=cds.MS.gene20415.t1;Parent=MS.gene20415.t1 |
| Gene Sequence |
| Protein sequence |
