AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene02109

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene02109.t1 MTR_2g030390 96.662 659 21 1 1 659 1 658 0.0 1254
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene02109.t1 AT3G24080 45.078 579 269 13 5 555 8 565 1.23e-108 342
MS.gene02109.t1 AT3G24080 45.078 579 269 13 5 555 8 565 1.30e-108 342
MS.gene02109.t1 AT3G24080 45.078 579 269 13 5 555 8 565 1.37e-108 342
MS.gene02109.t1 AT3G24080 45.078 579 269 13 5 555 8 565 1.70e-108 342

Find 116 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACCTGTCTTCTCCTTTA+AGG 0.067645 2.2:+57683114 None:intergenic
ATTGAGGAGGGACCAGATTT+TGG 0.223663 2.2:-57683274 MS.gene02109:CDS
TAAGCTTCAATTCCTCTTCT+TGG 0.247682 2.2:+57682090 None:intergenic
ATTCTTTGATGCTTTGATTA+AGG 0.251168 2.2:-57683443 MS.gene02109:CDS
ATCATTCTGTCATATTCCTC+TGG 0.284675 2.2:+57682605 None:intergenic
CCACATTCATCCCAATCTTT+AGG 0.290694 2.2:+57682461 None:intergenic
GATCCTTCGTGCAGCAAGTT+TGG 0.295537 2.2:-57682027 MS.gene02109:CDS
AAAAGCAAACACAGCAAGTT+TGG 0.300133 2.2:-57681913 MS.gene02109:CDS
GAAGCGTAAAACTGCACTTT+TGG 0.321590 2.2:-57682306 MS.gene02109:CDS
TGAGGAATTTGAGGAGAAAC+TGG 0.339212 2.2:-57683071 MS.gene02109:CDS
TACTTGGGCTTCCTAAAGAT+TGG 0.346122 2.2:-57682472 MS.gene02109:CDS
CACTTTCATCTTCACTACTA+TGG 0.346312 2.2:+57683365 None:intergenic
TGAGATGGAAATTGAGAGGC+AGG 0.355422 2.2:-57682918 MS.gene02109:CDS
AAGCCAAGAGAAGGGAAAAC+AGG 0.359507 2.2:-57681782 MS.gene02109:CDS
ATCCTTCGTGCAGCAAGTTT+GGG 0.366521 2.2:-57682026 MS.gene02109:CDS
AAAACAAAACCTAACAGATT+TGG 0.379299 2.2:-57682191 MS.gene02109:CDS
GAGTGAAGATGAGGAATTTG+AGG 0.381021 2.2:-57683080 MS.gene02109:CDS
TGCTCGTAAGGTGGAGGGTT+CGG 0.395725 2.2:-57682843 MS.gene02109:CDS
GACTTGCTAGAATCAGCCTT+GGG 0.399472 2.2:+57681870 None:intergenic
TCCTCTTTATCACCAAAATC+TGG 0.405490 2.2:+57683262 None:intergenic
GTATCCAGGCCAAATCTGTT+AGG 0.416690 2.2:+57682182 None:intergenic
TAGATTATGAGGACACAGTT+GGG 0.421516 2.2:-57682244 MS.gene02109:CDS
ACTTGGGCTTCCTAAAGATT+GGG 0.423740 2.2:-57682471 MS.gene02109:CDS
TCATCGATCAATAGTATCTC+TGG 0.430675 2.2:+57682158 None:intergenic
GAGTCGAGACTTAAAGCATA+TGG 0.437812 2.2:-57681741 MS.gene02109:CDS
AGCAGCAGAAAAGGATGGCT+TGG 0.438918 2.2:-57683155 MS.gene02109:CDS
TTCAATTCCTCTTCTTGGTA+AGG 0.450588 2.2:+57682095 None:intergenic
CTTCCGACTACTACCTTCCT+CGG 0.452952 2.2:+57682331 None:intergenic
GATACTATTGATCGATGATA+AGG 0.458126 2.2:-57682153 MS.gene02109:CDS
GAGAGAGGCAATACGACAAA+AGG 0.459308 2.2:-57682771 MS.gene02109:CDS
AGATCCTGTTCTTAAGCAAA+AGG 0.465168 2.2:-57683410 MS.gene02109:CDS
GTCTACTGCAGAATTAGAAA+AGG 0.471726 2.2:-57682636 MS.gene02109:CDS
CTAATTCTGCAGTAGACAAA+GGG 0.472024 2.2:+57682642 None:intergenic
TCATTCTGTCATATTCCTCT+GGG 0.472452 2.2:+57682606 None:intergenic
TGAGCAAGAGGAGTTGAAAC+AGG 0.482808 2.2:-57683188 MS.gene02109:CDS
AATGAGAAAGGTATATCAAA+TGG 0.485679 2.2:-57683232 MS.gene02109:CDS
AAATCCAGGGGATAGAGTGC+TGG 0.488077 2.2:-57682870 MS.gene02109:CDS
TACTAGTGATGATGATCTCA+TGG 0.493040 2.2:-57682381 MS.gene02109:CDS
TTTCAACTCTAAGAGTGATA+AGG 0.498953 2.2:-57683467 MS.gene02109:CDS
GATGAATGTGGATCTGATGG+TGG 0.500163 2.2:-57682449 MS.gene02109:CDS
GGGTCATGCTCGTAAGGTGG+AGG 0.503285 2.2:-57682849 MS.gene02109:CDS
TGATGAGAAGAGTAAAGATA+AGG 0.513195 2.2:-57683341 MS.gene02109:CDS
GCAGCAGAAAAGGATGGCTT+GGG 0.515479 2.2:-57683154 MS.gene02109:CDS
AGAGATTTCAGAAGATGAGA+TGG 0.521290 2.2:-57682933 MS.gene02109:CDS
AAAACCTAACAGATTTGGCC+TGG 0.522228 2.2:-57682186 MS.gene02109:CDS
GAGGATGAAACAAATGAGAA+AGG 0.523006 2.2:-57683244 MS.gene02109:CDS
CTGAAAGCAGCAGAAAAGGA+TGG 0.523891 2.2:-57683160 MS.gene02109:CDS
CTCACCTTAAAGGAGAAGAC+AGG 0.529520 2.2:-57683118 MS.gene02109:CDS
CAAGGTAGAGAGTGAAGATG+AGG 0.530933 2.2:-57683089 MS.gene02109:CDS
GACTTATGCTGATGAGCAAG+AGG 0.531868 2.2:-57683200 MS.gene02109:CDS
AAAGAGCAAAGAGGAGAGAG+AGG 0.532174 2.2:-57682786 MS.gene02109:CDS
ATGAATGTGGATCTGATGGT+GGG 0.532471 2.2:-57682448 MS.gene02109:CDS
GAAAGCAAGACAAATGATGA+TGG 0.538249 2.2:-57682282 MS.gene02109:CDS
ACACAGAAGAATCAAAATCA+AGG 0.538980 2.2:-57681806 MS.gene02109:CDS
AGTGCTGGGTCATGCTCGTA+AGG 0.540823 2.2:-57682855 MS.gene02109:CDS
AGATTATGAGGACACAGTTG+GGG 0.541091 2.2:-57682243 MS.gene02109:CDS
TAGTGAGGGTGAAGAAGACA+TGG 0.541771 2.2:-57682525 MS.gene02109:CDS
TCTAATTCTGCAGTAGACAA+AGG 0.542118 2.2:+57682641 None:intergenic
TTAGATTATGAGGACACAGT+TGG 0.543563 2.2:-57682245 MS.gene02109:CDS
GTTAACTTCAAACAATGTTG+TGG 0.543762 2.2:-57681943 MS.gene02109:CDS
TGACCCAGCACTCTATCCCC+TGG 0.546475 2.2:+57682866 None:intergenic
ATAGTATCTCTGGAGTATCC+AGG 0.549189 2.2:+57682168 None:intergenic
TGACTTGCTAGAATCAGCCT+TGG 0.550613 2.2:+57681869 None:intergenic
AAAGATACATGCTGAAGATG+AGG 0.550832 2.2:-57682058 MS.gene02109:CDS
GGCAAAGCATTTGATTGAGG+AGG 0.551984 2.2:-57683287 MS.gene02109:CDS
CTCATCAAACAGTTGTGTTG+TGG 0.554487 2.2:-57681844 MS.gene02109:CDS
ACTTGCTCCTTACCAAGAAG+AGG 0.555311 2.2:-57682102 MS.gene02109:CDS
ACTATTTCAAGAACAAAATG+TGG 0.558440 2.2:-57683003 MS.gene02109:CDS
AGGAAGGTAGTAGTCGGAAG+AGG 0.560258 2.2:-57682328 MS.gene02109:CDS
TTCCGACTACTACCTTCCTC+GGG 0.560833 2.2:+57682332 None:intergenic
AATCAAGGAAAGCCAAGAGA+AGG 0.564095 2.2:-57681791 MS.gene02109:CDS
AATCCAGGGGATAGAGTGCT+GGG 0.568166 2.2:-57682869 MS.gene02109:CDS
AAAGGATGGCTTGGGAGATG+AGG 0.568697 2.2:-57683146 MS.gene02109:CDS
ATCAAGGAAAGCCAAGAGAA+GGG 0.568922 2.2:-57681790 MS.gene02109:CDS
TGGGATGAATGTGGATCTGA+TGG 0.570198 2.2:-57682452 MS.gene02109:CDS
GGCAATACGACAAAAGGAAA+GGG 0.576585 2.2:-57682765 MS.gene02109:CDS
GCAAAGCATTTGATTGAGGA+GGG 0.577160 2.2:-57683286 MS.gene02109:CDS
AGGCAATACGACAAAAGGAA+AGG 0.579482 2.2:-57682766 MS.gene02109:CDS
CATGCTGAAGATGAGGGCTA+AGG 0.580350 2.2:-57682051 MS.gene02109:CDS
AAGATACATGCTGAAGATGA+GGG 0.584857 2.2:-57682057 MS.gene02109:CDS
ACGACAAAAGGAAAGGGATG+AGG 0.586281 2.2:-57682759 MS.gene02109:CDS
TTATGAGGACACAGTTGGGG+GGG 0.587460 2.2:-57682240 MS.gene02109:CDS
CCTAAAGATTGGGATGAATG+TGG 0.587753 2.2:-57682461 MS.gene02109:CDS
AAAGAGGACATTCCCGAGGA+AGG 0.588781 2.2:-57682344 MS.gene02109:CDS
GTTTGAGCATAACAAGAGGC+GGG 0.590327 2.2:-57683602 MS.gene02109:CDS
TATGCTTTAAGTCTCGACTC+TGG 0.591074 2.2:+57681744 None:intergenic
AAAAGATAAAGAAGATTGCA+GGG 0.591451 2.2:-57682685 MS.gene02109:CDS
GCTGGGTCATGCTCGTAAGG+TGG 0.591483 2.2:-57682852 MS.gene02109:CDS
AACTTCAAACAATGTTGTGG+AGG 0.597494 2.2:-57681940 MS.gene02109:CDS
GAGAAAGGTATATCAAATGG+TGG 0.598159 2.2:-57683229 MS.gene02109:CDS
GGAGAAGACAGGTGAAGACA+AGG 0.599497 2.2:-57683107 MS.gene02109:CDS
AGCCAAGAGAAGGGAAAACA+GGG 0.602506 2.2:-57681781 MS.gene02109:CDS
GGTCATGCTCGTAAGGTGGA+GGG 0.605836 2.2:-57682848 MS.gene02109:CDS
GGTGGCAAAGCATTTGATTG+AGG 0.605973 2.2:-57683290 MS.gene02109:CDS
CACAACACAACTGTTTGATG+AGG 0.608834 2.2:+57681845 None:intergenic
GATTATGAGGACACAGTTGG+GGG 0.611884 2.2:-57682242 MS.gene02109:CDS
GATGCAAGAGATACAAGAGA+AGG 0.616907 2.2:-57682711 MS.gene02109:CDS
AGTGATGATGATCTCATGGA+AGG 0.617533 2.2:-57682377 MS.gene02109:CDS
TTCCCGAGGAAGGTAGTAGT+CGG 0.625706 2.2:-57682334 MS.gene02109:CDS
GGTTTGAGCATAACAAGAGG+CGG 0.627786 2.2:-57683603 MS.gene02109:CDS
TCATCATCTTCTGAGAGTGA+AGG 0.628967 2.2:+57683529 None:intergenic
AAGATGAGATGGAAATTGAG+AGG 0.629773 2.2:-57682922 MS.gene02109:CDS
GAAGAGAAATAAGAAGCCCA+AGG 0.630672 2.2:-57681886 MS.gene02109:CDS
ATTATGAGGACACAGTTGGG+GGG 0.631668 2.2:-57682241 MS.gene02109:CDS
TGCGAAGTATTATAACGAAG+AGG 0.635980 2.2:-57682567 MS.gene02109:CDS
CTCAAATATCAAGATAGACG+AGG 0.643202 2.2:-57683638 MS.gene02109:CDS
TACCCAAACTTGCTGCACGA+AGG 0.643872 2.2:+57682024 None:intergenic
ATCAAACAGTTGTGTTGTGG+AGG 0.648436 2.2:-57681841 MS.gene02109:CDS
AGAGCAGAGAAAGAGCAAAG+AGG 0.649070 2.2:-57682795 MS.gene02109:CDS
AGAAAAGGAGTTTGACCCAG+AGG 0.654123 2.2:-57682621 MS.gene02109:CDS
TAGACGAGGAATATGCTCGT+AGG 0.664106 2.2:-57683624 MS.gene02109:CDS
CTATTTCAAGAACAAAATGT+GGG 0.673159 2.2:-57683002 MS.gene02109:CDS
TGAGCATAACAAGAGGCGGG+AGG 0.702904 2.2:-57683599 MS.gene02109:CDS
GTAGGTTTGAGCATAACAAG+AGG 0.707686 2.2:-57683606 MS.gene02109:CDS
GTAAGGTGGAGGGTTCGGTG+AGG 0.731572 2.2:-57682838 MS.gene02109:CDS
AATGTGGGTAGACAAGAATG+CGG 0.745968 2.2:-57682987 MS.gene02109:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTATAAATTAGATTATG+AGG - chr2.2:57683158-57683177 MS.gene02109:CDS 15.0%
!! ATGAAGAATTGAAAAAGAAA+GGG - chr2.2:57681849-57681868 MS.gene02109:CDS 20.0%
!! TATGAAGAATTGAAAAAGAA+AGG - chr2.2:57681848-57681867 MS.gene02109:CDS 20.0%
! AAAAAGAGGATGATTTACTT+GGG - chr2.2:57682926-57682945 MS.gene02109:CDS 25.0%
! AAAAAGATAAAGAAGATTGC+AGG - chr2.2:57682727-57682746 MS.gene02109:CDS 25.0%
! AAAACAAAACCTAACAGATT+TGG - chr2.2:57683222-57683241 MS.gene02109:CDS 25.0%
! AAAAGATAAAGAAGATTGCA+GGG - chr2.2:57682728-57682747 MS.gene02109:CDS 25.0%
! ACTATTTCAAGAACAAAATG+TGG - chr2.2:57682410-57682429 MS.gene02109:CDS 25.0%
! ATTCTTTGATGCTTTGATTA+AGG - chr2.2:57681970-57681989 MS.gene02109:CDS 25.0%
! CTATTTCAAGAACAAAATGT+GGG - chr2.2:57682411-57682430 MS.gene02109:CDS 25.0%
! TAAGAAGAAAAAGAGGTTAA+AGG - chr2.2:57683410-57683429 MS.gene02109:CDS 25.0%
! TGAAGAATTGAAAAAGAAAG+GGG - chr2.2:57681850-57681869 MS.gene02109:CDS 25.0%
!! AATGAGAAAGGTATATCAAA+TGG - chr2.2:57682181-57682200 MS.gene02109:CDS 25.0%
!! TTTTCAATTCTTCATAACGT+TGG + chr2.2:57681844-57681863 None:intergenic 25.0%
!!! AAATCTGTTAGGTTTTGTTT+TGG + chr2.2:57683223-57683242 None:intergenic 25.0%
!!! GAAAAAGTCAATGTTTTTGA+AGG - chr2.2:57682096-57682115 MS.gene02109:CDS 25.0%
ACACAGAAGAATCAAAATCA+AGG - chr2.2:57683607-57683626 MS.gene02109:CDS 30.0%
GAAAAAGAGGATGATTTACT+TGG - chr2.2:57682925-57682944 MS.gene02109:CDS 30.0%
GATACTATTGATCGATGATA+AGG - chr2.2:57683260-57683279 MS.gene02109:CDS 30.0%
GTTAACTTCAAACAATGTTG+TGG - chr2.2:57683470-57683489 MS.gene02109:CDS 30.0%
TGATGAGAAGAGTAAAGATA+AGG - chr2.2:57682072-57682091 MS.gene02109:CDS 30.0%
TTGAAAAAGAAAGGGGTTAT+TGG - chr2.2:57681857-57681876 MS.gene02109:CDS 30.0%
! AATGCGGAGATTTTAAATGT+TGG - chr2.2:57682442-57682461 MS.gene02109:CDS 30.0%
! ATGACTCAGAACATTTTTGA+TGG - chr2.2:57681728-57681747 MS.gene02109:CDS 30.0%
! TTTCAACTCTAAGAGTGATA+AGG - chr2.2:57681946-57681965 MS.gene02109:CDS 30.0%
!! TTAGTTTTCAGGAAAATCCA+GGG - chr2.2:57682530-57682549 MS.gene02109:CDS 30.0%
!!! AGAGTATGAAGTTAGTTTTC+AGG - chr2.2:57682519-57682538 MS.gene02109:CDS 30.0%
!!! TCATCCTCTTTTTCAAAATC+TGG + chr2.2:57682919-57682938 None:intergenic 30.0%
AAAAGCAAACACAGCAAGTT+TGG - chr2.2:57683500-57683519 MS.gene02109:CDS 35.0%
AAAGATACATGCTGAAGATG+AGG - chr2.2:57683355-57683374 MS.gene02109:CDS 35.0%
AACTTCAAACAATGTTGTGG+AGG - chr2.2:57683473-57683492 MS.gene02109:CDS 35.0%
AAGATACATGCTGAAGATGA+GGG - chr2.2:57683356-57683375 MS.gene02109:CDS 35.0%
AAGATGAGATGGAAATTGAG+AGG - chr2.2:57682491-57682510 MS.gene02109:CDS 35.0%
AGAGATTTCAGAAGATGAGA+TGG - chr2.2:57682480-57682499 MS.gene02109:CDS 35.0%
AGATCCTGTTCTTAAGCAAA+AGG - chr2.2:57682003-57682022 MS.gene02109:CDS 35.0%
ATCATTCTGTCATATTCCTC+TGG + chr2.2:57682811-57682830 None:intergenic 35.0%
CACTTTCATCTTCACTACTA+TGG + chr2.2:57682051-57682070 None:intergenic 35.0%
CTAATTCTGCAGTAGACAAA+GGG + chr2.2:57682774-57682793 None:intergenic 35.0%
CTCAAATATCAAGATAGACG+AGG - chr2.2:57681775-57681794 MS.gene02109:CDS 35.0%
GAAAGCAAGACAAATGATGA+TGG - chr2.2:57683131-57683150 MS.gene02109:CDS 35.0%
GAGGATGAAACAAATGAGAA+AGG - chr2.2:57682169-57682188 MS.gene02109:CDS 35.0%
GTCTACTGCAGAATTAGAAA+AGG - chr2.2:57682777-57682796 MS.gene02109:CDS 35.0%
GTTTGGGTAAGAAGAAAAAG+AGG - chr2.2:57683403-57683422 MS.gene02109:CDS 35.0%
TAAGCTTCAATTCCTCTTCT+TGG + chr2.2:57683326-57683345 None:intergenic 35.0%
TAGATTATGAGGACACAGTT+GGG - chr2.2:57683169-57683188 MS.gene02109:CDS 35.0%
TCATCGATCAATAGTATCTC+TGG + chr2.2:57683258-57683277 None:intergenic 35.0%
TCATTCTGTCATATTCCTCT+GGG + chr2.2:57682810-57682829 None:intergenic 35.0%
TCCTCTTTATCACCAAAATC+TGG + chr2.2:57682154-57682173 None:intergenic 35.0%
TCTAATTCTGCAGTAGACAA+AGG + chr2.2:57682775-57682794 None:intergenic 35.0%
TGAGGAAAAAGACAAACTCA+AGG - chr2.2:57682593-57682612 MS.gene02109:CDS 35.0%
TTAGATTATGAGGACACAGT+TGG - chr2.2:57683168-57683187 MS.gene02109:CDS 35.0%
TTCAATTCCTCTTCTTGGTA+AGG + chr2.2:57683321-57683340 None:intergenic 35.0%
! ACATCCTTTTGCTTAAGAAC+AGG + chr2.2:57682010-57682029 None:intergenic 35.0%
! GAGAAAGGTATATCAAATGG+TGG - chr2.2:57682184-57682203 MS.gene02109:CDS 35.0%
! GATTTTAAATGTTGGAGAGG+AGG - chr2.2:57682450-57682469 MS.gene02109:CDS 35.0%
! GGAGATTTTAAATGTTGGAG+AGG - chr2.2:57682447-57682466 MS.gene02109:CDS 35.0%
! TACTAGTGATGATGATCTCA+TGG - chr2.2:57683032-57683051 MS.gene02109:CDS 35.0%
! TGAGGATTTTCTCACCTTAA+AGG - chr2.2:57682285-57682304 MS.gene02109:CDS 35.0%
! TGCGAAGTATTATAACGAAG+AGG - chr2.2:57682846-57682865 MS.gene02109:CDS 35.0%
!! AATGTTTTTGAAGGATGTGG+TGG - chr2.2:57682105-57682124 MS.gene02109:CDS 35.0%
!! ACCAGATTTTGGTGATAAAG+AGG - chr2.2:57682150-57682169 MS.gene02109:CDS 35.0%
!! GAAGCCAGATTTTGAAAAAG+AGG - chr2.2:57682912-57682931 MS.gene02109:CDS 35.0%
!! GTCAATGTTTTTGAAGGATG+TGG - chr2.2:57682102-57682121 MS.gene02109:CDS 35.0%
!! TAGTTTTCAGGAAAATCCAG+GGG - chr2.2:57682531-57682550 MS.gene02109:CDS 35.0%
!! TTTTCTGAAAGCAGCAGAAA+AGG - chr2.2:57682249-57682268 MS.gene02109:CDS 35.0%
!!! GTAAGGAGCAAGTTTTTTCA+AGG + chr2.2:57683304-57683323 None:intergenic 35.0%
!!! GTTAGTTTTCAGGAAAATCC+AGG - chr2.2:57682529-57682548 MS.gene02109:CDS 35.0%
AAAACCTAACAGATTTGGCC+TGG - chr2.2:57683227-57683246 MS.gene02109:CDS 40.0%
AATCAAGGAAAGCCAAGAGA+AGG - chr2.2:57683622-57683641 MS.gene02109:CDS 40.0%
AATGTGGGTAGACAAGAATG+CGG - chr2.2:57682426-57682445 MS.gene02109:CDS 40.0%
ACTTGGGCTTCCTAAAGATT+GGG - chr2.2:57682942-57682961 MS.gene02109:CDS 40.0%
AGATTATGAGGACACAGTTG+GGG - chr2.2:57683170-57683189 MS.gene02109:CDS 40.0%
AGGCAATACGACAAAAGGAA+AGG - chr2.2:57682647-57682666 MS.gene02109:CDS 40.0%
ATCAAACAGTTGTGTTGTGG+AGG - chr2.2:57683572-57683591 MS.gene02109:CDS 40.0%
ATCAAGGAAAGCCAAGAGAA+GGG - chr2.2:57683623-57683642 MS.gene02109:CDS 40.0%
ATGAATGTGGATCTGATGGT+GGG - chr2.2:57682965-57682984 MS.gene02109:CDS 40.0%
CACAACACAACTGTTTGATG+AGG + chr2.2:57683571-57683590 None:intergenic 40.0%
CACCCTCACTACAAAAATCA+GGG + chr2.2:57682879-57682898 None:intergenic 40.0%
CCACATTCATCCCAATCTTT+AGG + chr2.2:57682955-57682974 None:intergenic 40.0%
CCTAAAGATTGGGATGAATG+TGG - chr2.2:57682952-57682971 MS.gene02109:CDS 40.0%
CTCATCAAACAGTTGTGTTG+TGG - chr2.2:57683569-57683588 MS.gene02109:CDS 40.0%
GAAGAGAAATAAGAAGCCCA+AGG - chr2.2:57683527-57683546 MS.gene02109:CDS 40.0%
GAGTCGAGACTTAAAGCATA+TGG - chr2.2:57683672-57683691 MS.gene02109:CDS 40.0%
GAGTGAAGATGAGGAATTTG+AGG - chr2.2:57682333-57682352 MS.gene02109:CDS 40.0%
GATGCAAGAGATACAAGAGA+AGG - chr2.2:57682702-57682721 MS.gene02109:CDS 40.0%
GGAAGGAGAAACTGAAAAAG+AGG - chr2.2:57683053-57683072 MS.gene02109:CDS 40.0%
GGCAATACGACAAAAGGAAA+GGG - chr2.2:57682648-57682667 MS.gene02109:CDS 40.0%
GTAGGTTTGAGCATAACAAG+AGG - chr2.2:57681807-57681826 MS.gene02109:CDS 40.0%
TACTTGGGCTTCCTAAAGAT+TGG - chr2.2:57682941-57682960 MS.gene02109:CDS 40.0%
TCACCCTCACTACAAAAATC+AGG + chr2.2:57682880-57682899 None:intergenic 40.0%
TGAGGAATTTGAGGAGAAAC+TGG - chr2.2:57682342-57682361 MS.gene02109:CDS 40.0%
TTCACCTGTCTTCTCCTTTA+AGG + chr2.2:57682302-57682321 None:intergenic 40.0%
! AGTGATGATGATCTCATGGA+AGG - chr2.2:57683036-57683055 MS.gene02109:CDS 40.0%
! GAAGCGTAAAACTGCACTTT+TGG - chr2.2:57683107-57683126 MS.gene02109:CDS 40.0%
! GACCCTGATTTTTGTAGTGA+GGG - chr2.2:57682874-57682893 MS.gene02109:CDS 40.0%
! GCAAAGCATTTGATTGAGGA+GGG - chr2.2:57682127-57682146 MS.gene02109:CDS 40.0%
! TATGCTTTAAGTCTCGACTC+TGG + chr2.2:57683672-57683691 None:intergenic 40.0%
! TCATCATCTTCTGAGAGTGA+AGG + chr2.2:57681887-57681906 None:intergenic 40.0%
! TGACCCTGATTTTTGTAGTG+AGG - chr2.2:57682873-57682892 MS.gene02109:CDS 40.0%
!! ATAGTATCTCTGGAGTATCC+AGG + chr2.2:57683248-57683267 None:intergenic 40.0%
AAAGAGCAAAGAGGAGAGAG+AGG - chr2.2:57682627-57682646 MS.gene02109:CDS 45.0%
AAGCCAAGAGAAGGGAAAAC+AGG - chr2.2:57683631-57683650 MS.gene02109:CDS 45.0%
ACGACAAAAGGAAAGGGATG+AGG - chr2.2:57682654-57682673 MS.gene02109:CDS 45.0%
ACTTGCTCCTTACCAAGAAG+AGG - chr2.2:57683311-57683330 MS.gene02109:CDS 45.0%
AGAAAAGGAGTTTGACCCAG+AGG - chr2.2:57682792-57682811 MS.gene02109:CDS 45.0%
AGAGCAGAGAAAGAGCAAAG+AGG - chr2.2:57682618-57682637 MS.gene02109:CDS 45.0%
AGCCAAGAGAAGGGAAAACA+GGG - chr2.2:57683632-57683651 MS.gene02109:CDS 45.0%
ATCCTTCGTGCAGCAAGTTT+GGG - chr2.2:57683387-57683406 MS.gene02109:CDS 45.0%
ATTATGAGGACACAGTTGGG+GGG - chr2.2:57683172-57683191 MS.gene02109:CDS 45.0%
CAAGGTAGAGAGTGAAGATG+AGG - chr2.2:57682324-57682343 MS.gene02109:CDS 45.0%
CTCACCTTAAAGGAGAAGAC+AGG - chr2.2:57682295-57682314 MS.gene02109:CDS 45.0%
CTGAAAGCAGCAGAAAAGGA+TGG - chr2.2:57682253-57682272 MS.gene02109:CDS 45.0%
GACTTATGCTGATGAGCAAG+AGG - chr2.2:57682213-57682232 MS.gene02109:CDS 45.0%
GAGAGAGGCAATACGACAAA+AGG - chr2.2:57682642-57682661 MS.gene02109:CDS 45.0%
GATGAATGTGGATCTGATGG+TGG - chr2.2:57682964-57682983 MS.gene02109:CDS 45.0%
GATTATGAGGACACAGTTGG+GGG - chr2.2:57683171-57683190 MS.gene02109:CDS 45.0%
GGTTTGAGCATAACAAGAGG+CGG - chr2.2:57681810-57681829 MS.gene02109:CDS 45.0%
GTATCCAGGCCAAATCTGTT+AGG + chr2.2:57683234-57683253 None:intergenic 45.0%
GTTTGAGCATAACAAGAGGC+GGG - chr2.2:57681811-57681830 MS.gene02109:CDS 45.0%
TAGACGAGGAATATGCTCGT+AGG - chr2.2:57681789-57681808 MS.gene02109:CDS 45.0%
TAGTGAGGGTGAAGAAGACA+TGG - chr2.2:57682888-57682907 MS.gene02109:CDS 45.0%
TGAAAAAGAGGACATTCCCG+AGG - chr2.2:57683065-57683084 MS.gene02109:CDS 45.0%
TGAGATGGAAATTGAGAGGC+AGG - chr2.2:57682495-57682514 MS.gene02109:CDS 45.0%
TGAGCAAGAGGAGTTGAAAC+AGG - chr2.2:57682225-57682244 MS.gene02109:CDS 45.0%
TGGGATGAATGTGGATCTGA+TGG - chr2.2:57682961-57682980 MS.gene02109:CDS 45.0%
! ATTGAGGAGGGACCAGATTT+TGG - chr2.2:57682139-57682158 MS.gene02109:CDS 45.0%
! GGCAAAGCATTTGATTGAGG+AGG - chr2.2:57682126-57682145 MS.gene02109:CDS 45.0%
! GGTGGCAAAGCATTTGATTG+AGG - chr2.2:57682123-57682142 MS.gene02109:CDS 45.0%
!! GACTTGCTAGAATCAGCCTT+GGG + chr2.2:57683546-57683565 None:intergenic 45.0%
!! TGACTTGCTAGAATCAGCCT+TGG + chr2.2:57683547-57683566 None:intergenic 45.0%
!!! TGGATCTGATGGTGGGTTTT+TGG - chr2.2:57682972-57682991 MS.gene02109:CDS 45.0%
AAAGAGGACATTCCCGAGGA+AGG - chr2.2:57683069-57683088 MS.gene02109:CDS 50.0%
AAATCCAGGGGATAGAGTGC+TGG - chr2.2:57682543-57682562 MS.gene02109:CDS 50.0%
AGCAGCAGAAAAGGATGGCT+TGG - chr2.2:57682258-57682277 MS.gene02109:CDS 50.0%
AGGAAGGTAGTAGTCGGAAG+AGG - chr2.2:57683085-57683104 MS.gene02109:CDS 50.0%
CATGCTGAAGATGAGGGCTA+AGG - chr2.2:57683362-57683381 MS.gene02109:CDS 50.0%
CTTCCGACTACTACCTTCCT+CGG + chr2.2:57683085-57683104 None:intergenic 50.0%
GATCCTTCGTGCAGCAAGTT+TGG - chr2.2:57683386-57683405 MS.gene02109:CDS 50.0%
GCAGCAGAAAAGGATGGCTT+GGG - chr2.2:57682259-57682278 MS.gene02109:CDS 50.0%
GGAGAAGACAGGTGAAGACA+AGG - chr2.2:57682306-57682325 MS.gene02109:CDS 50.0%
TTATGAGGACACAGTTGGGG+GGG - chr2.2:57683173-57683192 MS.gene02109:CDS 50.0%
TTCCCGAGGAAGGTAGTAGT+CGG - chr2.2:57683079-57683098 MS.gene02109:CDS 50.0%
TTCCGACTACTACCTTCCTC+GGG + chr2.2:57683084-57683103 None:intergenic 50.0%
! AAAGGATGGCTTGGGAGATG+AGG - chr2.2:57682267-57682286 MS.gene02109:CDS 50.0%
! AATCCAGGGGATAGAGTGCT+GGG - chr2.2:57682544-57682563 MS.gene02109:CDS 50.0%
! AGCCCTGTTTTCCCTTCTCT+TGG + chr2.2:57683637-57683656 None:intergenic 50.0%
!! TACCCAAACTTGCTGCACGA+AGG + chr2.2:57683392-57683411 None:intergenic 50.0%
GGTCATGCTCGTAAGGTGGA+GGG - chr2.2:57682565-57682584 MS.gene02109:CDS 55.0%
TGAGCATAACAAGAGGCGGG+AGG - chr2.2:57681814-57681833 MS.gene02109:CDS 55.0%
TGCTCGTAAGGTGGAGGGTT+CGG - chr2.2:57682570-57682589 MS.gene02109:CDS 55.0%
! AGTGCTGGGTCATGCTCGTA+AGG - chr2.2:57682558-57682577 MS.gene02109:CDS 55.0%
GCTGGGTCATGCTCGTAAGG+TGG - chr2.2:57682561-57682580 MS.gene02109:CDS 60.0%
GGGTCATGCTCGTAAGGTGG+AGG - chr2.2:57682564-57682583 MS.gene02109:CDS 60.0%
TGACCCAGCACTCTATCCCC+TGG + chr2.2:57682550-57682569 None:intergenic 60.0%
!! GTAAGGTGGAGGGTTCGGTG+AGG - chr2.2:57682575-57682594 MS.gene02109:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 57681728 57683707 57681728 ID=MS.gene02109
chr2.2 mRNA 57681728 57683707 57681728 ID=MS.gene02109.t1;Parent=MS.gene02109
chr2.2 exon 57681728 57683707 57681728 ID=MS.gene02109.t1.exon1;Parent=MS.gene02109.t1
chr2.2 CDS 57681728 57683707 57681728 ID=cds.MS.gene02109.t1;Parent=MS.gene02109.t1
Gene Sequence

>MS.gene02109

ATGACTCAGAACATTTTTGATGGCAGTGATTCAGAAAATGAAGATATCTCAAATATCAAGATAGACGAGGAATATGCTCGTAGGTTTGAGCATAACAAGAGGCGGGAGGATCTCCAACGTTATGAAGAATTGAAAAAGAAAGGGGTTATTGGTTCACCTTCACTCTCAGAAGATGATGAATCTGAGTCTGAATCTTCTGATGATGACGATGTGAACAATTTCAACTCTAAGAGTGATAAGGAATTCTTTGATGCTTTGATTAAGGTGAAGAAGAAAGATCCTGTTCTTAAGCAAAAGGATGTTAAGCTTTTTGAATCAGACCATAGTAGTGAAGATGAAAGTGATGATGAGAAGAGTAAAGATAAGGAGAAAAAGTCAATGTTTTTGAAGGATGTGGTGGCAAAGCATTTGATTGAGGAGGGACCAGATTTTGGTGATAAAGAGGATGAAACAAATGAGAAAGGTATATCAAATGGTGGTAAGAAGACTTATGCTGATGAGCAAGAGGAGTTGAAACAGGCTTTTCTGAAAGCAGCAGAAAAGGATGGCTTGGGAGATGAGGATTTTCTCACCTTAAAGGAGAAGACAGGTGAAGACAAGGTAGAGAGTGAAGATGAGGAATTTGAGGAGAAACTGGATGCATATTTTGATGATTCAAACGAAAATTCTTTATTTCTAAAAAACTATTTCAAGAACAAAATGTGGGTAGACAAGAATGCGGAGATTTTAAATGTTGGAGAGGAGGATTTGCAAGAGATTTCAGAAGATGAGATGGAAATTGAGAGGCAGGAAGAGTATGAAGTTAGTTTTCAGGAAAATCCAGGGGATAGAGTGCTGGGTCATGCTCGTAAGGTGGAGGGTTCGGTGAGGAAAAAGACAAACTCAAGGAAAGAGCAGAGAAAGAGCAAAGAGGAGAGAGAGGCAATACGACAAAAGGAAAGGGATGAGGAGTTGAAACATTTAAAGAATTTGAAGATGCAAGAGATACAAGAGAAGGTTAAAAAGATAAAGAAGATTGCAGGGATCAACGATGATGATATTATCCCTTTGTCTACTGCAGAATTAGAAAAGGAGTTTGACCCAGAGGAATATGACAGAATGATGAAGAAAGCATTTGATGCGAAGTATTATAACGAAGAGGATGTTGACCCTGATTTTTGTAGTGAGGGTGAAGAAGACATGGAGAAGCCAGATTTTGAAAAAGAGGATGATTTACTTGGGCTTCCTAAAGATTGGGATGAATGTGGATCTGATGGTGGGTTTTTGGCTGCAAGAGAAAAAGCATTGAAAGCAAAGATTGAAAATACTAGTGATGATGATCTCATGGAAGGAGAAACTGAAAAAGAGGACATTCCCGAGGAAGGTAGTAGTCGGAAGAGGAAGCGTAAAACTGCACTTTTGGAGAAAGCAAGACAAATGATGATGGATGAGTTTTATAAATTAGATTATGAGGACACAGTTGGGGGGGATCTGAAGACAAGATTCAAGTATACCAAAACAAAACCTAACAGATTTGGCCTGGATACTCCAGAGATACTATTGATCGATGATAAGGAACTGAATCAACATATTTCCTTGAAAAAACTTGCTCCTTACCAAGAAGAGGAATTGAAGCTTAGCAAAAAAAAAAGATACATGCTGAAGATGAGGGCTAAGGAGATCCTTCGTGCAGCAAGTTTGGGTAAGAAGAAAAAGAGGTTAAAGGTTGATTCTAGCAAATCAACTCAAGTTGATTCTAGCAAGTTAACTTCAAACAATGTTGTGGAGGAAGAAAAAGCAAACACAGCAAGTTTGGATAAGAAGAGAAATAAGAAGCCCAAGGCTGATTCTAGCAAGTCAACCTCATCAAACAGTTGTGTTGTGGAGGATGAAAAATCTAACACAGAAGAATCAAAATCAAGGAAAGCCAAGAGAAGGGAAAACAGGGCTAAATTAAAGTTGCCAGAGTCGAGACTTAAAGCATATGGAAAGACAACCTGA
Protein sequence

>MS.gene02109.t1

MTQNIFDGSDSENEDISNIKIDEEYARRFEHNKRREDLQRYEELKKKGVIGSPSLSEDDESESESSDDDDVNNFNSKSDKEFFDALIKVKKKDPVLKQKDVKLFESDHSSEDESDDEKSKDKEKKSMFLKDVVAKHLIEEGPDFGDKEDETNEKGISNGGKKTYADEQEELKQAFLKAAEKDGLGDEDFLTLKEKTGEDKVESEDEEFEEKLDAYFDDSNENSLFLKNYFKNKMWVDKNAEILNVGEEDLQEISEDEMEIERQEEYEVSFQENPGDRVLGHARKVEGSVRKKTNSRKEQRKSKEEREAIRQKERDEELKHLKNLKMQEIQEKVKKIKKIAGINDDDIIPLSTAELEKEFDPEEYDRMMKKAFDAKYYNEEDVDPDFCSEGEEDMEKPDFEKEDDLLGLPKDWDECGSDGGFLAAREKALKAKIENTSDDDLMEGETEKEDIPEEGSSRKRKRKTALLEKARQMMMDEFYKLDYEDTVGGDLKTRFKYTKTKPNRFGLDTPEILLIDDKELNQHISLKKLAPYQEEELKLSKKKRYMLKMRAKEILRAASLGKKKKRLKVDSSKSTQVDSSKLTSNNVVEEEKANTASLDKKRNKKPKADSSKSTSSNSCVVEDEKSNTEESKSRKAKRRENRAKLKLPESRLKAYGKTT