Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40019.t1 | XP_003590714.2 | 97.3 | 1288 | 35 | 0 | 1 | 1288 | 1 | 1288 | 0.00E+00 | 2386.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40019.t1 | Q5ZKD5 | 26.2 | 1288 | 787 | 30 | 5 | 1243 | 91 | 1263 | 1.2e-90 | 336.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40019.t1 | G7I2M7 | 97.3 | 1288 | 35 | 0 | 1 | 1288 | 1 | 1288 | 0.0e+00 | 2386.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene40019 | 0.809326 | 2.00E-50 | -1.69E-46 |
| MS.gene049711 | MS.gene40019 | 0.801044 | 1.08E-48 | -1.69E-46 |
| MS.gene049824 | MS.gene40019 | 0.813151 | 2.96E-51 | -1.69E-46 |
| MS.gene050085 | MS.gene40019 | 0.808437 | 3.10E-50 | -1.69E-46 |
| MS.gene050559 | MS.gene40019 | 0.800363 | 1.49E-48 | -1.69E-46 |
| MS.gene050654 | MS.gene40019 | 0.806246 | 9.03E-50 | -1.69E-46 |
| MS.gene050885 | MS.gene40019 | 0.804855 | 1.77E-49 | -1.69E-46 |
| MS.gene050945 | MS.gene40019 | 0.837244 | 5.83E-57 | -1.69E-46 |
| MS.gene051343 | MS.gene40019 | 0.828694 | 7.80E-55 | -1.69E-46 |
| MS.gene051363 | MS.gene40019 | 0.816661 | 4.93E-52 | -1.69E-46 |
| MS.gene051365 | MS.gene40019 | 0.81706 | 4.01E-52 | -1.69E-46 |
| MS.gene051450 | MS.gene40019 | 0.816179 | 6.32E-52 | -1.69E-46 |
| MS.gene051744 | MS.gene40019 | 0.825625 | 4.23E-54 | -1.69E-46 |
| MS.gene051832 | MS.gene40019 | 0.821711 | 3.49E-53 | -1.69E-46 |
| MS.gene051975 | MS.gene40019 | 0.825339 | 4.95E-54 | -1.69E-46 |
| MS.gene052072 | MS.gene40019 | 0.800348 | 1.50E-48 | -1.69E-46 |
| MS.gene052307 | MS.gene40019 | 0.820512 | 6.59E-53 | -1.69E-46 |
| MS.gene052533 | MS.gene40019 | 0.803149 | 4.00E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene40019 | 0.802871 | 4.57E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene40019 | 0.803032 | 4.23E-49 | -1.69E-46 |
| MS.gene052609 | MS.gene40019 | 0.828099 | 1.08E-54 | -1.69E-46 |
| MS.gene052717 | MS.gene40019 | 0.823715 | 1.19E-53 | -1.69E-46 |
| MS.gene053058 | MS.gene40019 | 0.805572 | 1.25E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene40019 | 0.839317 | 1.70E-57 | -1.69E-46 |
| MS.gene054576 | MS.gene40019 | 0.814277 | 1.67E-51 | -1.69E-46 |
| MS.gene054892 | MS.gene40019 | 0.809531 | 1.81E-50 | -1.69E-46 |
| MS.gene054893 | MS.gene40019 | 0.809168 | 2.16E-50 | -1.69E-46 |
| MS.gene055313 | MS.gene40019 | 0.805534 | 1.27E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene40019 | 0.814011 | 1.91E-51 | -1.69E-46 |
| MS.gene056045 | MS.gene40019 | 0.823344 | 1.46E-53 | -1.69E-46 |
| MS.gene056403 | MS.gene40019 | 0.866209 | 3.37E-65 | -1.69E-46 |
| MS.gene056605 | MS.gene40019 | 0.866877 | 2.07E-65 | -1.69E-46 |
| MS.gene05686 | MS.gene40019 | 0.81018 | 1.31E-50 | -1.69E-46 |
| MS.gene05689 | MS.gene40019 | 0.836076 | 1.16E-56 | -1.69E-46 |
| MS.gene056973 | MS.gene40019 | 0.809311 | 2.01E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene40019 | 0.836516 | 8.94E-57 | -1.69E-46 |
| MS.gene057360 | MS.gene40019 | 0.819259 | 1.28E-52 | -1.69E-46 |
| MS.gene058292 | MS.gene40019 | 0.817099 | 3.93E-52 | -1.69E-46 |
| MS.gene058668 | MS.gene40019 | 0.804997 | 1.65E-49 | -1.69E-46 |
| MS.gene059146 | MS.gene40019 | 0.829053 | 6.38E-55 | -1.69E-46 |
| MS.gene05985 | MS.gene40019 | -0.829431 | 5.17E-55 | -1.69E-46 |
| MS.gene059935 | MS.gene40019 | 0.826017 | 3.42E-54 | -1.69E-46 |
| MS.gene060365 | MS.gene40019 | 0.804664 | 1.94E-49 | -1.69E-46 |
| MS.gene060763 | MS.gene40019 | 0.831112 | 2.01E-55 | -1.69E-46 |
| MS.gene060830 | MS.gene40019 | 0.816861 | 4.45E-52 | -1.69E-46 |
| MS.gene060933 | MS.gene40019 | 0.850702 | 1.43E-60 | -1.69E-46 |
| MS.gene060935 | MS.gene40019 | 0.821533 | 3.84E-53 | -1.69E-46 |
| MS.gene060937 | MS.gene40019 | 0.838532 | 2.72E-57 | -1.69E-46 |
| MS.gene061188 | MS.gene40019 | 0.826999 | 1.99E-54 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40019.t1 | MTR_1g072890 | 97.283 | 1288 | 35 | 0 | 1 | 1288 | 1 | 1288 | 0.0 | 2578 |
| MS.gene40019.t1 | MTR_1g072970 | 86.252 | 1302 | 154 | 6 | 1 | 1288 | 1 | 1291 | 0.0 | 2258 |
| MS.gene40019.t1 | MTR_1g072890 | 96.768 | 1021 | 33 | 0 | 1 | 1021 | 1 | 1021 | 0.0 | 2035 |
| MS.gene40019.t1 | MTR_1g053255 | 28.875 | 1129 | 736 | 23 | 10 | 1103 | 8 | 1104 | 7.86e-107 | 365 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40019.t1 | AT2G34357 | 52.388 | 1277 | 570 | 16 | 16 | 1285 | 24 | 1269 | 0.0 | 1216 |
| MS.gene40019.t1 | AT4G23540 | 28.386 | 1078 | 692 | 24 | 14 | 1051 | 18 | 1055 | 1.53e-108 | 369 |
Find 253 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTGTTCTTCTCCGCTTT+TGG | 0.114005 | 1.4:-59686849 | None:intergenic |
| TTTACTTTGTGCAGATATTT+TGG | 0.170487 | 1.4:+59679910 | MS.gene40019:intron |
| TTCTCCGTCGTCGAAGAATT+TGG | 0.172226 | 1.4:+59678513 | MS.gene40019:CDS |
| ATCCTTTATACCATTGAATT+TGG | 0.176595 | 1.4:+59681238 | MS.gene40019:CDS |
| ACCTCATCAAATGAGATTTC+TGG | 0.183929 | 1.4:+59679699 | MS.gene40019:CDS |
| TGAGGTTCTGCTTGGGCTTA+TGG | 0.208576 | 1.4:+59683481 | MS.gene40019:CDS |
| CAGATCTTTCAACAAGTTCT+TGG | 0.242536 | 1.4:-59681804 | None:intergenic |
| GGCCAATCTTGGTTTATTAA+AGG | 0.244569 | 1.4:+59685179 | MS.gene40019:intron |
| TAGAAATTGCCTTGCCGTTC+AGG | 0.255024 | 1.4:-59686242 | None:intergenic |
| GCATATTATTCCACGAATAT+CGG | 0.258510 | 1.4:-59681630 | None:intergenic |
| GTTCCGGTACGATGCGGTTC+AGG | 0.259939 | 1.4:-59678363 | None:intergenic |
| TCCACAATGTTTCACAAATT+AGG | 0.266808 | 1.4:+59680154 | MS.gene40019:CDS |
| TGCCTATGATTGGACGTATT+AGG | 0.272542 | 1.4:+59681357 | MS.gene40019:CDS |
| TCAAATGATAAAGATGATAT+TGG | 0.273601 | 1.4:+59681698 | MS.gene40019:CDS |
| ATTTATCTGTGTCAAATATA+TGG | 0.275809 | 1.4:+59681270 | MS.gene40019:CDS |
| ATAAAGGATAAGAAAGTTTC+AGG | 0.277939 | 1.4:-59681224 | None:intergenic |
| AATCAGCAGCATCGTCATTT+AGG | 0.279672 | 1.4:+59686292 | MS.gene40019:CDS |
| ATTAACCAAGACTTGTTCTT+TGG | 0.291284 | 1.4:-59681732 | None:intergenic |
| GCCTATGATTGGACGTATTA+GGG | 0.297196 | 1.4:+59681358 | MS.gene40019:CDS |
| CAATCCTTCTGCTTGTGATT+TGG | 0.298079 | 1.4:-59685211 | None:intergenic |
| CTGAAGGACGTTTGATTATC+CGG | 0.320522 | 1.4:+59686728 | MS.gene40019:CDS |
| TGATGAGAGTTTGATTAAAC+AGG | 0.320857 | 1.4:+59680000 | MS.gene40019:CDS |
| TGCATCTGTGGCTGCGAATA+TGG | 0.321152 | 1.4:-59679951 | None:intergenic |
| TTTCGCATTTGTTGATTCAT+AGG | 0.325836 | 1.4:+59678566 | MS.gene40019:CDS |
| AGCTTGAACCTTATGCATAT+TGG | 0.332365 | 1.4:+59686953 | MS.gene40019:CDS |
| AGTATTAAAGCCAGCATTGC+AGG | 0.334576 | 1.4:+59683071 | MS.gene40019:CDS |
| TTGGAGAGTATCGTTGTTGA+TGG | 0.340549 | 1.4:+59678532 | MS.gene40019:CDS |
| ATGACTTGGTCAGGTGGATT+AGG | 0.341857 | 1.4:-59678385 | None:intergenic |
| CTGTGGTAAATATGACAAAA+AGG | 0.345210 | 1.4:+59687043 | MS.gene40019:CDS |
| AACCTTTAATAAACCAAGAT+TGG | 0.349531 | 1.4:-59685181 | None:intergenic |
| TCTTCCCCAGTCGCATATTT+CGG | 0.351960 | 1.4:+59678325 | MS.gene40019:CDS |
| TTCCAAATTCAATGGTATAA+AGG | 0.353034 | 1.4:-59681240 | None:intergenic |
| TGAGGTGTTGTGCACATTAT+CGG | 0.358806 | 1.4:+59679668 | MS.gene40019:CDS |
| GTCGAAGTCGCCCATGCATT+TGG | 0.359151 | 1.4:+59684739 | MS.gene40019:CDS |
| TTCTCCGTGTAGGCCAATCT+TGG | 0.365341 | 1.4:+59685168 | MS.gene40019:intron |
| AGTTAGACCTGTTTCCTAAA+GGG | 0.366515 | 1.4:-59680562 | None:intergenic |
| ACGCACTTGCTTACTCTTTG+TGG | 0.368574 | 1.4:+59681513 | MS.gene40019:CDS |
| GGTAAGAAGGCAATCCCATT+TGG | 0.370830 | 1.4:+59679311 | MS.gene40019:intron |
| AGTAAAGGCAATCAAGTCTA+TGG | 0.372158 | 1.4:-59683538 | None:intergenic |
| CAAAATGCCAACAGAATAGA+TGG | 0.394116 | 1.4:+59682768 | MS.gene40019:CDS |
| CTTGCAGACAAATGACTATC+AGG | 0.396859 | 1.4:-59686811 | None:intergenic |
| ATTATCACTATGCTGCTGCC+TGG | 0.397194 | 1.4:+59680110 | MS.gene40019:CDS |
| GAACAGGGCTTATGACATTC+TGG | 0.398126 | 1.4:+59684717 | MS.gene40019:CDS |
| CCTAGTCACTAGGCGCATAA+TGG | 0.399891 | 1.4:+59679587 | MS.gene40019:CDS |
| TACTTTGCAGCTTGAGAAGC+AGG | 0.404455 | 1.4:+59681463 | MS.gene40019:intron |
| CTAATAAGAAAACCAGGAAC+AGG | 0.405034 | 1.4:+59684701 | MS.gene40019:CDS |
| TAGGTTGCTCGCGGCCTTGT+TGG | 0.405180 | 1.4:+59684920 | MS.gene40019:intron |
| AATGTCATAAGCCCTGTTCC+TGG | 0.407903 | 1.4:-59684713 | None:intergenic |
| CGAAGCTTGAGGTTCTGCTT+GGG | 0.409869 | 1.4:+59683474 | MS.gene40019:CDS |
| CAAATGATAAAGATGATATT+GGG | 0.410170 | 1.4:+59681699 | MS.gene40019:CDS |
| AGACATCACGGAGGCCCAAA+TGG | 0.410616 | 1.4:-59679326 | None:intergenic |
| GGATCAGCCCTTGTTGCAAT+GGG | 0.414422 | 1.4:+59681200 | MS.gene40019:CDS |
| CTTGGTTAATTACTCGCAAC+AGG | 0.414607 | 1.4:+59681745 | MS.gene40019:CDS |
| TCGAAGCTTGAGGTTCTGCT+TGG | 0.418257 | 1.4:+59683473 | MS.gene40019:CDS |
| AGATGATGGTGGTTGTTTGC+AGG | 0.419096 | 1.4:+59681853 | MS.gene40019:CDS |
| TTCGCAGTTTCATTGTTGCC+TGG | 0.419426 | 1.4:+59683015 | MS.gene40019:CDS |
| CGTCAAAGGTTTAGCTCGCT+TGG | 0.420509 | 1.4:+59684970 | MS.gene40019:CDS |
| GCAGAGGTGTTGGTGGTTAA+CGG | 0.421525 | 1.4:-59678254 | None:intergenic |
| AGAAGTTTCATATGTTCTTC+AGG | 0.428141 | 1.4:-59685486 | None:intergenic |
| CTCCGACAAACCTGCAATGC+TGG | 0.428906 | 1.4:-59683081 | None:intergenic |
| CTAAAGGGAAAATCTTCATC+AGG | 0.430536 | 1.4:-59680547 | None:intergenic |
| CAGAGCCTGGTAGGGCTGGT+AGG | 0.435386 | 1.4:+59686869 | MS.gene40019:CDS |
| TGGATCAGCCCTTGTTGCAA+TGG | 0.440463 | 1.4:+59681199 | MS.gene40019:CDS |
| AGAGCCTGGTAGGGCTGGTA+GGG | 0.440903 | 1.4:+59686870 | MS.gene40019:CDS |
| CAAAGGTAGGCATTCTTTCA+AGG | 0.441898 | 1.4:-59679499 | None:intergenic |
| AGATGATATTGGGCAAGATA+TGG | 0.443019 | 1.4:+59681709 | MS.gene40019:CDS |
| AGGAACTAAGGGAGCCCAAC+AGG | 0.447331 | 1.4:+59679458 | MS.gene40019:CDS |
| TGCTTGATCGGCAGAAAGTA+AGG | 0.447864 | 1.4:+59686638 | MS.gene40019:CDS |
| ACTGCTCGCTTGCTTGATGC+TGG | 0.451373 | 1.4:+59679738 | MS.gene40019:CDS |
| TGAATTGCATATATCATCGT+TGG | 0.452485 | 1.4:-59678203 | None:intergenic |
| AACAGAAAATTTGAGGGCAT+TGG | 0.453453 | 1.4:+59681772 | MS.gene40019:CDS |
| CCATTATGCGCCTAGTGACT+AGG | 0.453764 | 1.4:-59679587 | None:intergenic |
| CATATTATTCCACGAATATC+GGG | 0.454138 | 1.4:-59681629 | None:intergenic |
| TCGAGCAGGACAAATGTAGA+TGG | 0.455711 | 1.4:-59685037 | None:intergenic |
| GTAAGAAGGCAATCCCATTT+GGG | 0.457342 | 1.4:+59679312 | MS.gene40019:CDS |
| TGGTCAGGTGGATTAGGTTC+CGG | 0.458352 | 1.4:-59678379 | None:intergenic |
| GCAATCAAGTCTATGGCGTT+TGG | 0.458967 | 1.4:-59683531 | None:intergenic |
| CCGTCTGTTCCCTTTCCTCC+CGG | 0.460840 | 1.4:-59686747 | None:intergenic |
| TCTTCAGCTTCCAAATTCAA+TGG | 0.460919 | 1.4:-59681248 | None:intergenic |
| AAGCTGGTGGAGATATTAAG+AGG | 0.462137 | 1.4:+59686923 | MS.gene40019:CDS |
| CTTGAAGGCAAGAGTGCCTC+TGG | 0.463007 | 1.4:+59687066 | MS.gene40019:CDS |
| CTGGGGAAGAAGGGAGGTTG+TGG | 0.464578 | 1.4:-59678312 | None:intergenic |
| TCCCTAATACGTCCAATCAT+AGG | 0.465765 | 1.4:-59681359 | None:intergenic |
| ACGGTTGCACTTATCATATG+TGG | 0.468050 | 1.4:-59684950 | None:intergenic |
| GTTTCATATGTTCTTCAGGC+AGG | 0.470768 | 1.4:-59685482 | None:intergenic |
| ACAGCAGAGCCTGGTAGGGC+TGG | 0.471151 | 1.4:+59686865 | MS.gene40019:CDS |
| ATGAATCTCAATCAGTTCTC+AGG | 0.474206 | 1.4:+59682826 | MS.gene40019:CDS |
| ATACCTTTGATTTCGAGTCT+TGG | 0.476758 | 1.4:-59683625 | None:intergenic |
| TTCATAGGGATAGTGTTCAT+TGG | 0.476869 | 1.4:+59678581 | MS.gene40019:CDS |
| AGTATACCTCTCATAAAGTA+AGG | 0.479237 | 1.4:-59680496 | None:intergenic |
| CTGGATGAATCAAGGAGATC+AGG | 0.479568 | 1.4:+59680040 | MS.gene40019:CDS |
| TAGACAAAACAAGAACATAA+AGG | 0.479604 | 1.4:+59681673 | MS.gene40019:CDS |
| AAAGAAGAACCCGATATTCG+TGG | 0.481818 | 1.4:+59681620 | MS.gene40019:CDS |
| AAATATGCGACTGGGGAAGA+AGG | 0.482203 | 1.4:-59678322 | None:intergenic |
| AGCGATTCGATGACTTGGTC+AGG | 0.485964 | 1.4:-59678394 | None:intergenic |
| CATTATGCGCCTAGTGACTA+GGG | 0.486726 | 1.4:-59679586 | None:intergenic |
| AGACACAGCTAAAAGCTTCA+AGG | 0.487391 | 1.4:+59681568 | MS.gene40019:CDS |
| CCTAGCATCATATTCTGAAT+CGG | 0.488966 | 1.4:-59686782 | None:intergenic |
| TGAAGGACGTTTGATTATCC+GGG | 0.489005 | 1.4:+59686729 | MS.gene40019:CDS |
| TCTCCTCGTCTCCAAATGCA+TGG | 0.489991 | 1.4:-59684750 | None:intergenic |
| TAGTTAGACCTGTTTCCTAA+AGG | 0.491566 | 1.4:-59680563 | None:intergenic |
| CTTGGACTGTTAAGAAGTAA+AGG | 0.492219 | 1.4:-59683607 | None:intergenic |
| GTGTTGGTGGTTAACGGCGG+TGG | 0.493642 | 1.4:-59678248 | None:intergenic |
| CATCTCATCATCGTCTGACC+TGG | 0.494658 | 1.4:-59686695 | None:intergenic |
| TTCGCATTTGTTGATTCATA+GGG | 0.495983 | 1.4:+59678567 | MS.gene40019:CDS |
| AGTCATTTGTCTGCAAGGTC+CGG | 0.497944 | 1.4:+59686817 | MS.gene40019:CDS |
| AGGTTGCAACAGAAAATTTG+AGG | 0.498991 | 1.4:+59681765 | MS.gene40019:CDS |
| CAAGCGAGCTAAACCTTTGA+CGG | 0.500697 | 1.4:-59684969 | None:intergenic |
| AAATGCTGGTGAAGGAACTA+AGG | 0.500927 | 1.4:+59679446 | MS.gene40019:CDS |
| TATTAGGGAGAAGGCTCAAA+AGG | 0.501198 | 1.4:+59681373 | MS.gene40019:CDS |
| GAGTCGTCGGCCACAACATA+GGG | 0.502468 | 1.4:+59686996 | MS.gene40019:CDS |
| CTCCCTGAACCGCATCGTAC+CGG | 0.502791 | 1.4:+59678360 | MS.gene40019:CDS |
| CGGAGAAGAACAGCAGAGCC+TGG | 0.503610 | 1.4:+59686856 | MS.gene40019:CDS |
| TTTGATTATCCGGGAGGAAA+GGG | 0.504061 | 1.4:+59686738 | MS.gene40019:CDS |
| GTTTGATTATCCGGGAGGAA+AGG | 0.505910 | 1.4:+59686737 | MS.gene40019:CDS |
| ATGATAAGTGCAACCGTCAA+AGG | 0.509071 | 1.4:+59684956 | MS.gene40019:CDS |
| GAGTTTGATTAAACAGGGAG+TGG | 0.510391 | 1.4:+59680006 | MS.gene40019:CDS |
| TTGGATTCGTTGTTGAATGT+TGG | 0.511127 | 1.4:-59678184 | None:intergenic |
| TCCTTCTTCAACACAGCCAC+GGG | 0.512188 | 1.4:-59678451 | None:intergenic |
| GATCATGGAAGGAATCGAAA+TGG | 0.513498 | 1.4:+59678156 | None:intergenic |
| GAAGAACAGCAGAGCCTGGT+AGG | 0.515608 | 1.4:+59686860 | MS.gene40019:CDS |
| GAAGGATAGTTACAAAATGA+AGG | 0.516245 | 1.4:-59681545 | None:intergenic |
| TTAGATCTGAGAATCTCAAA+AGG | 0.517424 | 1.4:+59686668 | MS.gene40019:CDS |
| TGAGTCGTCGGCCACAACAT+AGG | 0.517871 | 1.4:+59686995 | MS.gene40019:CDS |
| TTCCGGTACGATGCGGTTCA+GGG | 0.517921 | 1.4:-59678362 | None:intergenic |
| AGATCAAGGAGCGGAAAGAG+AGG | 0.518453 | 1.4:+59685597 | MS.gene40019:intron |
| GCTTATCACGAAGTGTGGAT+TGG | 0.518922 | 1.4:+59685443 | MS.gene40019:CDS |
| GCATCATATTCTGAATCGGC+TGG | 0.519730 | 1.4:-59686778 | None:intergenic |
| AGTTCTTACAACAGGTAAGA+AGG | 0.519955 | 1.4:+59679298 | MS.gene40019:intron |
| CTGAAATCTACAAAAGATGA+TGG | 0.520706 | 1.4:+59681839 | MS.gene40019:CDS |
| TCAAGTGGCCAATATGCATA+AGG | 0.523498 | 1.4:-59686961 | None:intergenic |
| TGGTGGAGATATTAAGAGGA+AGG | 0.524645 | 1.4:+59686927 | MS.gene40019:CDS |
| CTGCCGACAGGATGATTCAA+TGG | 0.525113 | 1.4:+59683796 | MS.gene40019:intron |
| TTCAGGTCCCATTGCAACAA+GGG | 0.527489 | 1.4:-59681207 | None:intergenic |
| ACCTAATTTGTGAAACATTG+TGG | 0.528796 | 1.4:-59680155 | None:intergenic |
| CAACACCTCTGCACCGTCAT+CGG | 0.530998 | 1.4:+59678265 | MS.gene40019:CDS |
| AAGTTCTCTCGATCATACTC+AGG | 0.531090 | 1.4:+59683220 | MS.gene40019:CDS |
| GTGCAGCTTCATACGTGCCT+TGG | 0.531128 | 1.4:+59681179 | MS.gene40019:intron |
| GACATCACGGAGGCCCAAAT+GGG | 0.532838 | 1.4:-59679325 | None:intergenic |
| GATAATACTGGCTCTTAAAG+AGG | 0.532942 | 1.4:+59683844 | MS.gene40019:CDS |
| GTCTGAACCATCTATTCTGT+TGG | 0.538070 | 1.4:-59682775 | None:intergenic |
| CGTCATCGGCGCAATGTCAC+AGG | 0.538926 | 1.4:+59678279 | MS.gene40019:CDS |
| TATGGCCAAAGAACAAGTCT+TGG | 0.539050 | 1.4:+59681727 | MS.gene40019:CDS |
| AGCAAGGTCAGAGAATTCAT+AGG | 0.539362 | 1.4:-59684993 | None:intergenic |
| CAAGAACATACAAAACCTGT+TGG | 0.540635 | 1.4:-59679473 | None:intergenic |
| AGATAACTCTGGATGAATCA+AGG | 0.542333 | 1.4:+59680032 | MS.gene40019:CDS |
| TGTTGGTGTCATGCAGAAGA+AGG | 0.543631 | 1.4:+59683191 | MS.gene40019:CDS |
| GACAGGATGATTCAATGGCC+TGG | 0.544833 | 1.4:+59683801 | MS.gene40019:intron |
| AGAATCTCAAAAGGAAGTCC+AGG | 0.546874 | 1.4:+59686677 | MS.gene40019:CDS |
| GGGATGCTTATCACGAAGTG+TGG | 0.547145 | 1.4:+59685438 | MS.gene40019:CDS |
| ATTCCATTTCCGATCATGGA+AGG | 0.548811 | 1.4:+59678145 | None:intergenic |
| TTATCACTATGCTGCTGCCT+GGG | 0.549257 | 1.4:+59680111 | MS.gene40019:CDS |
| CACCTCAAGTAGTGCTTCAG+AGG | 0.550298 | 1.4:-59679652 | None:intergenic |
| GGTTGCAACAGAAAATTTGA+GGG | 0.550727 | 1.4:+59681766 | MS.gene40019:CDS |
| TTTGCAGCAGCCCTATGTTG+TGG | 0.551398 | 1.4:-59687006 | None:intergenic |
| CTCCTTCTTCAACACAGCCA+CGG | 0.551480 | 1.4:-59678452 | None:intergenic |
| TCTTACTGATTCAAGACCGA+AGG | 0.552941 | 1.4:+59678642 | MS.gene40019:CDS |
| GATTCGTCAGACAAGTGCTC+AGG | 0.554011 | 1.4:-59686595 | None:intergenic |
| GTTGCACCGAAATATGCGAC+TGG | 0.554961 | 1.4:-59678331 | None:intergenic |
| TCAACTAACCTTGCGTATGT+TGG | 0.557578 | 1.4:-59685511 | None:intergenic |
| TTTCAAAAGCAACTACATCC+AGG | 0.559469 | 1.4:+59685657 | MS.gene40019:CDS |
| CTGATAGTCATTTGTCTGCA+AGG | 0.559535 | 1.4:+59686812 | MS.gene40019:CDS |
| CGCCCATGCATTTGGAGACG+AGG | 0.560462 | 1.4:+59684747 | MS.gene40019:CDS |
| CTGTGACATTGCGCCGATGA+CGG | 0.561333 | 1.4:-59678278 | None:intergenic |
| GAACATTATTTGCAGGATGT+TGG | 0.561592 | 1.4:+59683174 | MS.gene40019:intron |
| CGATGACGGTGCAGAGGTGT+TGG | 0.562762 | 1.4:-59678264 | None:intergenic |
| TGGTTGAGTGTTTGTTTCAG+TGG | 0.562799 | 1.4:+59685253 | MS.gene40019:CDS |
| CTCCTCGTCTCCAAATGCAT+GGG | 0.565443 | 1.4:-59684749 | None:intergenic |
| AGCCACTCGATTTGCTTGAT+CGG | 0.566128 | 1.4:+59686626 | MS.gene40019:CDS |
| GCATTTGGAGACGAGGAGAA+AGG | 0.567246 | 1.4:+59684754 | MS.gene40019:CDS |
| AAGAACATACAAAACCTGTT+GGG | 0.567767 | 1.4:-59679472 | None:intergenic |
| CAGGTCAGACGATGATGAGA+TGG | 0.570043 | 1.4:+59686696 | MS.gene40019:CDS |
| AGGGACTGACAGTGTCATCA+AGG | 0.571222 | 1.4:+59681483 | MS.gene40019:CDS |
| CTCTCCAAATTCTTCGACGA+CGG | 0.571271 | 1.4:-59678517 | None:intergenic |
| TTAAAAGCGATTCGATGACT+TGG | 0.571324 | 1.4:-59678399 | None:intergenic |
| GATTGGACGTATTAGGGAGA+AGG | 0.572003 | 1.4:+59681364 | MS.gene40019:CDS |
| TATGGCGTTTGGCAGAAGAA+TGG | 0.572032 | 1.4:-59683520 | None:intergenic |
| AATATGCGACTGGGGAAGAA+GGG | 0.573040 | 1.4:-59678321 | None:intergenic |
| TGCATCAACCCCTAGTCACT+AGG | 0.575361 | 1.4:+59679577 | MS.gene40019:CDS |
| TCAAATGAGATTTCTGGAGA+TGG | 0.575469 | 1.4:+59679705 | MS.gene40019:CDS |
| TTTGGCATCTGAACATGAAG+AGG | 0.575489 | 1.4:+59679928 | MS.gene40019:CDS |
| TATCACGAAGTGTGGATTGG+AGG | 0.576082 | 1.4:+59685446 | MS.gene40019:CDS |
| GAACTCAACTTTGACTGCCT+CGG | 0.577235 | 1.4:-59683585 | None:intergenic |
| GGGAGTGGATCAGATAACTC+TGG | 0.577650 | 1.4:+59680021 | MS.gene40019:CDS |
| CCGATTCAGAATATGATGCT+AGG | 0.582895 | 1.4:+59686782 | MS.gene40019:CDS |
| TAAGCCCTACCAGCCCTACC+AGG | 0.584920 | 1.4:-59686874 | None:intergenic |
| AACTCTCCTTACTTTATGAG+AGG | 0.585087 | 1.4:+59680490 | MS.gene40019:CDS |
| TACAGGCTAATAAGAAAACC+AGG | 0.585447 | 1.4:+59684695 | MS.gene40019:intron |
| GCCCGTGGCTGTGTTGAAGA+AGG | 0.586372 | 1.4:+59678450 | MS.gene40019:CDS |
| GTAGCCAAATCACAAGCAGA+AGG | 0.588275 | 1.4:+59685207 | MS.gene40019:CDS |
| AAGAACAGCAGAGCCTGGTA+GGG | 0.589719 | 1.4:+59686861 | MS.gene40019:CDS |
| TTTCAGGTCCCATTGCAACA+AGG | 0.591569 | 1.4:-59681208 | None:intergenic |
| TTTGAGATCACTGAAAACAC+TGG | 0.591847 | 1.4:-59679811 | None:intergenic |
| TTTGGAGACGAGGAGAAAGG+TGG | 0.594862 | 1.4:+59684757 | MS.gene40019:CDS |
| CTATTAGCATCTGCGAGTGA+AGG | 0.596295 | 1.4:+59679372 | MS.gene40019:CDS |
| AATCAAAAGCAGTTAAAGCA+AGG | 0.596980 | 1.4:-59685009 | None:intergenic |
| TTGCAACAAGGGCTGATCCA+AGG | 0.597962 | 1.4:-59681196 | None:intergenic |
| TGACGGTGCAGAGGTGTTGG+TGG | 0.598610 | 1.4:-59678261 | None:intergenic |
| CTGCCTCGGACTTCATGACA+TGG | 0.599170 | 1.4:-59683571 | None:intergenic |
| ACTTTGCAGCTTGAGAAGCA+GGG | 0.599256 | 1.4:+59681464 | MS.gene40019:intron |
| TTGGAGACGAGGAGAAAGGT+GGG | 0.601042 | 1.4:+59684758 | MS.gene40019:CDS |
| TTGCACCGAAATATGCGACT+GGG | 0.601258 | 1.4:-59678330 | None:intergenic |
| AATCATAGGCAAAATTTCGT+CGG | 0.602575 | 1.4:-59681345 | None:intergenic |
| GAAAGTTTATCAAGACATCA+CGG | 0.603730 | 1.4:-59679338 | None:intergenic |
| GAGTTTGATGGAGACAGCAA+AGG | 0.604231 | 1.4:+59686204 | MS.gene40019:CDS |
| CCGGGAGGAAAGGGAACAGA+CGG | 0.606596 | 1.4:+59686747 | MS.gene40019:CDS |
| AACGGCAAGGCAATTTCTAG+AGG | 0.609750 | 1.4:+59686246 | MS.gene40019:CDS |
| TGGTAGGGCTTACACTGGAA+AGG | 0.611286 | 1.4:+59686885 | MS.gene40019:CDS |
| GGTGGAGCAAATGCAAATGC+TGG | 0.613071 | 1.4:+59679432 | MS.gene40019:CDS |
| GATGAGAGTTTGATTAAACA+GGG | 0.613401 | 1.4:+59680001 | MS.gene40019:CDS |
| AGTCCAAGACTCGAAATCAA+AGG | 0.613427 | 1.4:+59683622 | MS.gene40019:CDS |
| TTCCTCTGAAGCACTACTTG+AGG | 0.615882 | 1.4:+59679650 | MS.gene40019:CDS |
| ACGGCAAGGCAATTTCTAGA+GGG | 0.621924 | 1.4:+59686247 | MS.gene40019:CDS |
| TTGCGCCGATGACGGTGCAG+AGG | 0.626574 | 1.4:-59678270 | None:intergenic |
| GAGCGGAAAGAGAGGAACCG+AGG | 0.627235 | 1.4:+59685605 | MS.gene40019:CDS |
| TGTTATCGTTAAAGTGCCCG+TGG | 0.627370 | 1.4:+59678435 | MS.gene40019:CDS |
| TGCTGCTGATTTGAGATGTG+TGG | 0.628832 | 1.4:-59686280 | None:intergenic |
| GATTAGGTTCCGGTACGATG+CGG | 0.630939 | 1.4:-59678369 | None:intergenic |
| GGCAAGGCAATTTCTAGAGG+GGG | 0.631149 | 1.4:+59686249 | MS.gene40019:CDS |
| AATGCTGGTGAAGGAACTAA+GGG | 0.631940 | 1.4:+59679447 | MS.gene40019:CDS |
| TAATAAGAAAACCAGGAACA+GGG | 0.632518 | 1.4:+59684702 | MS.gene40019:CDS |
| TCCAGAAATCTCATTTGATG+AGG | 0.632522 | 1.4:-59679700 | None:intergenic |
| GTCAGACGATGATGAGATGG+AGG | 0.633184 | 1.4:+59686699 | MS.gene40019:CDS |
| TTGAGATCACTGAAAACACT+GGG | 0.634526 | 1.4:-59679810 | None:intergenic |
| GCAAATGCAAATGCTGGTGA+AGG | 0.636144 | 1.4:+59679438 | MS.gene40019:CDS |
| GGAGGAAAGGGAACAGACGG+AGG | 0.636748 | 1.4:+59686750 | MS.gene40019:CDS |
| GTGCTAAATCTGAAGAAACC+AGG | 0.641226 | 1.4:+59685627 | MS.gene40019:CDS |
| CGGCAAGGCAATTTCTAGAG+GGG | 0.645153 | 1.4:+59686248 | MS.gene40019:CDS |
| GATTCGATGACTTGGTCAGG+TGG | 0.647206 | 1.4:-59678391 | None:intergenic |
| GAGATGGAGGTAGATTCTGA+AGG | 0.647548 | 1.4:+59686712 | MS.gene40019:CDS |
| ATGCGACTGGGGAAGAAGGG+AGG | 0.648895 | 1.4:-59678318 | None:intergenic |
| TTTCTTCAGATTTAGCACCT+CGG | 0.650186 | 1.4:-59685622 | None:intergenic |
| GCAAATGCATTTGAAGAGCG+TGG | 0.652504 | 1.4:+59685233 | MS.gene40019:CDS |
| AGTTCTCTCGATCATACTCA+GGG | 0.654484 | 1.4:+59683221 | MS.gene40019:CDS |
| AGGGCTGGTAGGGCTTACAC+TGG | 0.665086 | 1.4:+59686880 | MS.gene40019:CDS |
| ACTTCTGACCAACATACGCA+AGG | 0.669281 | 1.4:+59685503 | MS.gene40019:CDS |
| TTGTGAGCTTAGGTTGCTCG+CGG | 0.669687 | 1.4:+59684911 | MS.gene40019:intron |
| TGCAGAATACCTGAACGGCA+AGG | 0.670993 | 1.4:+59686233 | MS.gene40019:CDS |
| TGCCGATCAAGCAAATCGAG+TGG | 0.675125 | 1.4:-59686628 | None:intergenic |
| CCGGAACTAAAGCCCAAAAG+CGG | 0.676318 | 1.4:+59686836 | MS.gene40019:CDS |
| TTGTAAAACAGATCAAGGAG+CGG | 0.680605 | 1.4:+59685588 | MS.gene40019:intron |
| AGGACGTTTGATTATCCGGG+AGG | 0.685208 | 1.4:+59686732 | MS.gene40019:CDS |
| AGTGATGCAGAATACCTGAA+CGG | 0.696328 | 1.4:+59686228 | MS.gene40019:CDS |
| AAATCTACAAAAGATGATGG+TGG | 0.698268 | 1.4:+59681842 | MS.gene40019:CDS |
| CTTCATAGAAAGCACGCCAG+AGG | 0.701114 | 1.4:-59687082 | None:intergenic |
| ACTCCATGTCATGAAGTCCG+AGG | 0.707627 | 1.4:+59683568 | MS.gene40019:CDS |
| CGGTACGATGCGGTTCAGGG+AGG | 0.708652 | 1.4:-59678359 | None:intergenic |
| ATTATGCGCCTAGTGACTAG+GGG | 0.709999 | 1.4:-59679585 | None:intergenic |
| AAAGAATAAAGAGATAACCA+AGG | 0.711747 | 1.4:+59685063 | MS.gene40019:CDS |
| TGCACCGAAATATGCGACTG+GGG | 0.712244 | 1.4:-59678329 | None:intergenic |
| GAGGTGTTGGTGGTTAACGG+CGG | 0.724078 | 1.4:-59678251 | None:intergenic |
| CGTTTGGCAGAAGAATGGCA+AGG | 0.732352 | 1.4:-59683515 | None:intergenic |
| AGTTTATCAAGACATCACGG+AGG | 0.840719 | 1.4:-59679335 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 59678160 | 59687149 | 59678160 | ID=MS.gene40019 |
| chr1.4 | mRNA | 59678160 | 59687149 | 59678160 | ID=MS.gene40019.t1;Parent=MS.gene40019 |
| chr1.4 | exon | 59678160 | 59678663 | 59678160 | ID=MS.gene40019.t1.exon1;Parent=MS.gene40019.t1 |
| chr1.4 | CDS | 59678160 | 59678663 | 59678160 | ID=cds.MS.gene40019.t1;Parent=MS.gene40019.t1 |
| chr1.4 | exon | 59679312 | 59679834 | 59679312 | ID=MS.gene40019.t1.exon2;Parent=MS.gene40019.t1 |
| chr1.4 | CDS | 59679312 | 59679834 | 59679312 | ID=cds.MS.gene40019.t1;Parent=MS.gene40019.t1 |
| chr1.4 | exon | 59679924 | 59680175 | 59679924 | ID=MS.gene40019.t1.exon3;Parent=MS.gene40019.t1 |
| chr1.4 | CDS | 59679924 | 59680175 | 59679924 | ID=cds.MS.gene40019.t1;Parent=MS.gene40019.t1 |
| chr1.4 | exon | 59680485 | 59680576 | 59680485 | ID=MS.gene40019.t1.exon4;Parent=MS.gene40019.t1 |
| chr1.4 | CDS | 59680485 | 59680576 | 59680485 | ID=cds.MS.gene40019.t1;Parent=MS.gene40019.t1 |
| chr1.4 | exon | 59681185 | 59681394 | 59681185 | ID=MS.gene40019.t1.exon5;Parent=MS.gene40019.t1 |
| chr1.4 | CDS | 59681185 | 59681394 | 59681185 | ID=cds.MS.gene40019.t1;Parent=MS.gene40019.t1 |
| chr1.4 | exon | 59681473 | 59681874 | 59681473 | ID=MS.gene40019.t1.exon6;Parent=MS.gene40019.t1 |
| chr1.4 | CDS | 59681473 | 59681874 | 59681473 | ID=cds.MS.gene40019.t1;Parent=MS.gene40019.t1 |
| chr1.4 | exon | 59682678 | 59682847 | 59682678 | ID=MS.gene40019.t1.exon7;Parent=MS.gene40019.t1 |
| chr1.4 | CDS | 59682678 | 59682847 | 59682678 | ID=cds.MS.gene40019.t1;Parent=MS.gene40019.t1 |
| chr1.4 | exon | 59682999 | 59683092 | 59682999 | ID=MS.gene40019.t1.exon8;Parent=MS.gene40019.t1 |
| chr1.4 | CDS | 59682999 | 59683092 | 59682999 | ID=cds.MS.gene40019.t1;Parent=MS.gene40019.t1 |
| chr1.4 | exon | 59683189 | 59683242 | 59683189 | ID=MS.gene40019.t1.exon9;Parent=MS.gene40019.t1 |
| chr1.4 | CDS | 59683189 | 59683242 | 59683189 | ID=cds.MS.gene40019.t1;Parent=MS.gene40019.t1 |
| chr1.4 | exon | 59683452 | 59683643 | 59683452 | ID=MS.gene40019.t1.exon10;Parent=MS.gene40019.t1 |
| chr1.4 | CDS | 59683452 | 59683643 | 59683452 | ID=cds.MS.gene40019.t1;Parent=MS.gene40019.t1 |
| chr1.4 | exon | 59683806 | 59683865 | 59683806 | ID=MS.gene40019.t1.exon11;Parent=MS.gene40019.t1 |
| chr1.4 | CDS | 59683806 | 59683865 | 59683806 | ID=cds.MS.gene40019.t1;Parent=MS.gene40019.t1 |
| chr1.4 | exon | 59684700 | 59684813 | 59684700 | ID=MS.gene40019.t1.exon12;Parent=MS.gene40019.t1 |
| chr1.4 | CDS | 59684700 | 59684813 | 59684700 | ID=cds.MS.gene40019.t1;Parent=MS.gene40019.t1 |
| chr1.4 | exon | 59684923 | 59685084 | 59684923 | ID=MS.gene40019.t1.exon13;Parent=MS.gene40019.t1 |
| chr1.4 | CDS | 59684923 | 59685084 | 59684923 | ID=cds.MS.gene40019.t1;Parent=MS.gene40019.t1 |
| chr1.4 | exon | 59685180 | 59685308 | 59685180 | ID=MS.gene40019.t1.exon14;Parent=MS.gene40019.t1 |
| chr1.4 | CDS | 59685180 | 59685308 | 59685180 | ID=cds.MS.gene40019.t1;Parent=MS.gene40019.t1 |
| chr1.4 | exon | 59685423 | 59685524 | 59685423 | ID=MS.gene40019.t1.exon15;Parent=MS.gene40019.t1 |
| chr1.4 | CDS | 59685423 | 59685524 | 59685423 | ID=cds.MS.gene40019.t1;Parent=MS.gene40019.t1 |
| chr1.4 | exon | 59685599 | 59685678 | 59685599 | ID=MS.gene40019.t1.exon16;Parent=MS.gene40019.t1 |
| chr1.4 | CDS | 59685599 | 59685678 | 59685599 | ID=cds.MS.gene40019.t1;Parent=MS.gene40019.t1 |
| chr1.4 | exon | 59686170 | 59686313 | 59686170 | ID=MS.gene40019.t1.exon17;Parent=MS.gene40019.t1 |
| chr1.4 | CDS | 59686170 | 59686313 | 59686170 | ID=cds.MS.gene40019.t1;Parent=MS.gene40019.t1 |
| chr1.4 | exon | 59686567 | 59687149 | 59686567 | ID=MS.gene40019.t1.exon18;Parent=MS.gene40019.t1 |
| chr1.4 | CDS | 59686567 | 59687149 | 59686567 | ID=cds.MS.gene40019.t1;Parent=MS.gene40019.t1 |
| Gene Sequence |
| Protein sequence |
