Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95472.t1 | XP_003590714.2 | 97.3 | 1288 | 32 | 1 | 1 | 1285 | 1 | 1288 | 0.00E+00 | 2383.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95472.t1 | Q5ZKD5 | 26.0 | 1267 | 772 | 28 | 24 | 1240 | 112 | 1263 | 1.2e-90 | 336.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95472.t1 | G7I2M7 | 97.3 | 1288 | 32 | 1 | 1 | 1285 | 1 | 1288 | 0.0e+00 | 2383.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049207 | MS.gene95472 | 0.842201 | 2.99E-58 | -1.69E-46 |
| MS.gene049254 | MS.gene95472 | 0.813367 | 2.65E-51 | -1.69E-46 |
| MS.gene049283 | MS.gene95472 | 0.805772 | 1.14E-49 | -1.69E-46 |
| MS.gene049343 | MS.gene95472 | 0.808254 | 3.39E-50 | -1.69E-46 |
| MS.gene049473 | MS.gene95472 | 0.800079 | 1.70E-48 | -1.69E-46 |
| MS.gene049666 | MS.gene95472 | 0.814522 | 1.48E-51 | -1.69E-46 |
| MS.gene049824 | MS.gene95472 | 0.881209 | 2.90E-70 | -1.69E-46 |
| MS.gene049825 | MS.gene95472 | 0.858431 | 8.28E-63 | -1.69E-46 |
| MS.gene049873 | MS.gene95472 | 0.830391 | 3.02E-55 | -1.69E-46 |
| MS.gene050559 | MS.gene95472 | 0.828773 | 7.46E-55 | -1.69E-46 |
| MS.gene050561 | MS.gene95472 | 0.822513 | 2.28E-53 | -1.69E-46 |
| MS.gene050562 | MS.gene95472 | 0.824907 | 6.26E-54 | -1.69E-46 |
| MS.gene050885 | MS.gene95472 | 0.833827 | 4.26E-56 | -1.69E-46 |
| MS.gene051574 | MS.gene95472 | 0.817804 | 2.73E-52 | -1.69E-46 |
| MS.gene051700 | MS.gene95472 | 0.815779 | 7.76E-52 | -1.69E-46 |
| MS.gene051744 | MS.gene95472 | 0.849831 | 2.51E-60 | -1.69E-46 |
| MS.gene05188 | MS.gene95472 | 0.800233 | 1.59E-48 | -1.69E-46 |
| MS.gene051975 | MS.gene95472 | 0.809159 | 2.17E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene95472 | 0.800325 | 1.52E-48 | -1.69E-46 |
| MS.gene052582 | MS.gene95472 | 0.839483 | 1.54E-57 | -1.69E-46 |
| MS.gene052584 | MS.gene95472 | 0.854922 | 8.91E-62 | -1.69E-46 |
| MS.gene052586 | MS.gene95472 | 0.800258 | 1.57E-48 | -1.69E-46 |
| MS.gene052717 | MS.gene95472 | 0.874791 | 5.12E-68 | -1.69E-46 |
| MS.gene053080 | MS.gene95472 | 0.817035 | 4.06E-52 | -1.69E-46 |
| MS.gene05308 | MS.gene95472 | 0.825736 | 3.98E-54 | -1.69E-46 |
| MS.gene053122 | MS.gene95472 | 0.823258 | 1.53E-53 | -1.69E-46 |
| MS.gene053226 | MS.gene95472 | 0.869619 | 2.70E-66 | -1.69E-46 |
| MS.gene053963 | MS.gene95472 | 0.809966 | 1.46E-50 | -1.69E-46 |
| MS.gene053995 | MS.gene95472 | 0.8324 | 9.66E-56 | -1.69E-46 |
| MS.gene054328 | MS.gene95472 | 0.801883 | 7.30E-49 | -1.69E-46 |
| MS.gene054576 | MS.gene95472 | 0.826784 | 2.24E-54 | -1.69E-46 |
| MS.gene054651 | MS.gene95472 | 0.830101 | 3.55E-55 | -1.69E-46 |
| MS.gene055166 | MS.gene95472 | 0.801016 | 1.10E-48 | -1.69E-46 |
| MS.gene055513 | MS.gene95472 | 0.816485 | 5.40E-52 | -1.69E-46 |
| MS.gene055586 | MS.gene95472 | 0.811455 | 6.94E-51 | -1.69E-46 |
| MS.gene055589 | MS.gene95472 | 0.813105 | 3.03E-51 | -1.69E-46 |
| MS.gene055778 | MS.gene95472 | 0.802818 | 4.68E-49 | -1.69E-46 |
| MS.gene055808 | MS.gene95472 | 0.814221 | 1.72E-51 | -1.69E-46 |
| MS.gene056050 | MS.gene95472 | 0.83609 | 1.15E-56 | -1.69E-46 |
| MS.gene056091 | MS.gene95472 | 0.82776 | 1.31E-54 | -1.69E-46 |
| MS.gene056403 | MS.gene95472 | 0.888243 | 7.01E-73 | -1.69E-46 |
| MS.gene05659 | MS.gene95472 | 0.825661 | 4.15E-54 | -1.69E-46 |
| MS.gene056605 | MS.gene95472 | 0.875347 | 3.31E-68 | -1.69E-46 |
| MS.gene05686 | MS.gene95472 | 0.82065 | 6.13E-53 | -1.69E-46 |
| MS.gene05689 | MS.gene95472 | 0.868368 | 6.88E-66 | -1.69E-46 |
| MS.gene056973 | MS.gene95472 | 0.807209 | 5.65E-50 | -1.69E-46 |
| MS.gene056986 | MS.gene95472 | 0.80177 | 7.70E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene95472 | 0.824739 | 6.86E-54 | -1.69E-46 |
| MS.gene057208 | MS.gene95472 | 0.812763 | 3.60E-51 | -1.69E-46 |
| MS.gene057915 | MS.gene95472 | 0.801886 | 7.29E-49 | -1.69E-46 |
| MS.gene058037 | MS.gene95472 | 0.805954 | 1.04E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene95472 | 0.818241 | 2.17E-52 | -1.69E-46 |
| MS.gene058668 | MS.gene95472 | 0.80365 | 3.15E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene95472 | 0.801924 | 7.16E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene95472 | 0.822178 | 2.72E-53 | -1.69E-46 |
| MS.gene059625 | MS.gene95472 | 0.800246 | 1.58E-48 | -1.69E-46 |
| MS.gene05985 | MS.gene95472 | -0.830081 | 3.59E-55 | -1.69E-46 |
| MS.gene059901 | MS.gene95472 | -0.801738 | 7.81E-49 | -1.69E-46 |
| MS.gene059935 | MS.gene95472 | 0.872562 | 2.89E-67 | -1.69E-46 |
| MS.gene060365 | MS.gene95472 | 0.83418 | 3.48E-56 | -1.69E-46 |
| MS.gene060763 | MS.gene95472 | 0.840544 | 8.16E-58 | -1.69E-46 |
| MS.gene060830 | MS.gene95472 | 0.852414 | 4.69E-61 | -1.69E-46 |
| MS.gene060933 | MS.gene95472 | 0.831588 | 1.53E-55 | -1.69E-46 |
| MS.gene060935 | MS.gene95472 | 0.830578 | 2.71E-55 | -1.69E-46 |
| MS.gene060937 | MS.gene95472 | 0.841013 | 6.14E-58 | -1.69E-46 |
| MS.gene06094 | MS.gene95472 | 0.800464 | 1.42E-48 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95472.t1 | MTR_1g072890 | 97.283 | 1288 | 32 | 1 | 1 | 1285 | 1 | 1288 | 0.0 | 2575 |
| MS.gene95472.t1 | MTR_1g072970 | 86.022 | 1302 | 154 | 7 | 1 | 1285 | 1 | 1291 | 0.0 | 2243 |
| MS.gene95472.t1 | MTR_1g072890 | 97.062 | 1021 | 30 | 0 | 1 | 1021 | 1 | 1021 | 0.0 | 2041 |
| MS.gene95472.t1 | MTR_1g053255 | 28.875 | 1129 | 736 | 23 | 10 | 1103 | 8 | 1104 | 1.34e-106 | 364 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95472.t1 | AT2G34357 | 52.590 | 1274 | 569 | 15 | 16 | 1282 | 24 | 1269 | 0.0 | 1224 |
| MS.gene95472.t1 | AT4G23540 | 28.571 | 1078 | 690 | 25 | 14 | 1051 | 18 | 1055 | 1.95e-108 | 369 |
Find 251 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTGTTCTTCTCCGCTTT+TGG | 0.114005 | 1.3:-52530762 | None:intergenic |
| TTTACTTTGTGCAGATATTT+TGG | 0.170487 | 1.3:+52523813 | MS.gene95472:intron |
| ATCCTTTATACCATTGAATT+TGG | 0.176595 | 1.3:+52525150 | MS.gene95472:CDS |
| ACCTCATCAAATGAGATTTC+TGG | 0.183929 | 1.3:+52523602 | MS.gene95472:CDS |
| TGAGGTTCTGCTTGGGCTTA+TGG | 0.208576 | 1.3:+52527393 | MS.gene95472:CDS |
| CAGATCTTTCAACAAGTTCT+TGG | 0.242536 | 1.3:-52525716 | None:intergenic |
| GGCCAATCTTGGTTTATTAA+AGG | 0.244569 | 1.3:+52529091 | MS.gene95472:intron |
| TAGAAATTGCCTTGCCGTTC+AGG | 0.255024 | 1.3:-52530155 | None:intergenic |
| TGCCTATGATTGGACGTATT+AGG | 0.272542 | 1.3:+52525269 | MS.gene95472:CDS |
| TCAAATGATAAAGATGATAT+TGG | 0.273601 | 1.3:+52525610 | MS.gene95472:CDS |
| TCCGCAATGTTTCACAAATT+AGG | 0.275204 | 1.3:+52524057 | MS.gene95472:CDS |
| ATTTATCTGTGTCAAATATA+TGG | 0.275809 | 1.3:+52525182 | MS.gene95472:CDS |
| ATAAAGGATAAGAAAGTTTC+AGG | 0.277939 | 1.3:-52525136 | None:intergenic |
| ATTAACCAAGACTTGTTCTT+TGG | 0.291284 | 1.3:-52525644 | None:intergenic |
| GCCTATGATTGGACGTATTA+GGG | 0.297196 | 1.3:+52525270 | MS.gene95472:CDS |
| CAATCCTTCTGCTTGTGATT+TGG | 0.298079 | 1.3:-52529123 | None:intergenic |
| CATATTATTCCACGAATATC+AGG | 0.314917 | 1.3:-52525541 | None:intergenic |
| CTGAAGGACGTTTGATTATC+CGG | 0.320522 | 1.3:+52530641 | MS.gene95472:CDS |
| TGATGAGAGTTTGATTAAAC+AGG | 0.320857 | 1.3:+52523903 | MS.gene95472:CDS |
| TGCATCTGTGGCTGCGAATA+TGG | 0.321152 | 1.3:-52523854 | None:intergenic |
| AATCAGCAGCATCGTCATTC+AGG | 0.322268 | 1.3:+52530205 | MS.gene95472:CDS |
| TTTCGCATTTGTTGATTCAT+AGG | 0.325836 | 1.3:+52522471 | MS.gene95472:CDS |
| AGCTTGAACCTTATGCATAT+TGG | 0.332365 | 1.3:+52530857 | MS.gene95472:CDS |
| AGTATTAAAGCCAGCATTGC+AGG | 0.334576 | 1.3:+52526983 | MS.gene95472:CDS |
| CTGTGGTAAATATGACAAAA+AGG | 0.345210 | 1.3:+52530947 | MS.gene95472:CDS |
| AACCTTTAATAAACCAAGAT+TGG | 0.349531 | 1.3:-52529093 | None:intergenic |
| TCGGAGAGTATCGTTGTTGA+TGG | 0.352716 | 1.3:+52522437 | MS.gene95472:CDS |
| TTCCAAATTCAATGGTATAA+AGG | 0.353034 | 1.3:-52525152 | None:intergenic |
| TCTTCCCCAGTCGCATATTT+CGG | 0.358176 | 1.3:+52522230 | MS.gene95472:CDS |
| TGAGGTGTTGTGCACATTAT+CGG | 0.358806 | 1.3:+52523571 | MS.gene95472:CDS |
| GTCGAAGTCGCCCATGCATT+TGG | 0.359151 | 1.3:+52528651 | MS.gene95472:CDS |
| TTCTCCGTCGTCGAAGAATT+CGG | 0.360523 | 1.3:+52522418 | MS.gene95472:CDS |
| ATGACGTGGTCAGGTGGATT+AGG | 0.364631 | 1.3:-52522290 | None:intergenic |
| TTCTCCGTGTAGGCCAATCT+TGG | 0.365341 | 1.3:+52529080 | MS.gene95472:intron |
| AGTTAGACCTGTTTCCTAAA+GGG | 0.366515 | 1.3:-52524465 | None:intergenic |
| GGTAAGAAGGCAATCCCATT+TGG | 0.370830 | 1.3:+52523214 | MS.gene95472:intron |
| AGTAAAGGCAATCAAGTCTA+TGG | 0.372158 | 1.3:-52527450 | None:intergenic |
| CAAAATGCCAACAGAATAGA+TGG | 0.394116 | 1.3:+52526680 | MS.gene95472:CDS |
| CTTGCAGACAAATGACTATC+AGG | 0.396859 | 1.3:-52530724 | None:intergenic |
| ATTATCACTATGCTGCTGCC+TGG | 0.397194 | 1.3:+52524013 | MS.gene95472:CDS |
| GAACAGGGCTTATGACATTC+TGG | 0.398126 | 1.3:+52528629 | MS.gene95472:CDS |
| CCTAGTCACTAGGCGCATAA+TGG | 0.399891 | 1.3:+52523490 | MS.gene95472:CDS |
| TACTTTGCAGCTTGAGAAGC+AGG | 0.404455 | 1.3:+52525375 | MS.gene95472:intron |
| CTAATAAGAAAACCAGGAAC+AGG | 0.405034 | 1.3:+52528613 | MS.gene95472:CDS |
| TAGGTTGCTCGCGGCCTTGT+TGG | 0.405180 | 1.3:+52528832 | MS.gene95472:intron |
| AGCGATTCGATGACGTGGTC+AGG | 0.405656 | 1.3:-52522299 | None:intergenic |
| TTTCCTCACTGAGATAATAC+TGG | 0.407293 | 1.3:+52527744 | MS.gene95472:CDS |
| AATGTCATAAGCCCTGTTCC+TGG | 0.407903 | 1.3:-52528625 | None:intergenic |
| CGAAGCTTGAGGTTCTGCTT+GGG | 0.409869 | 1.3:+52527386 | MS.gene95472:CDS |
| CAAATGATAAAGATGATATT+GGG | 0.410170 | 1.3:+52525611 | MS.gene95472:CDS |
| AGACATCACGGAGGCCCAAA+TGG | 0.410616 | 1.3:-52523229 | None:intergenic |
| GGATCAGCCCTTGTTGCAAT+GGG | 0.414422 | 1.3:+52525112 | MS.gene95472:CDS |
| CTTGGTTAATTACTCGCAAC+AGG | 0.414607 | 1.3:+52525657 | MS.gene95472:CDS |
| TCGAAGCTTGAGGTTCTGCT+TGG | 0.418257 | 1.3:+52527385 | MS.gene95472:CDS |
| AGATGATGGTGGTTGTTTGC+AGG | 0.419096 | 1.3:+52525765 | MS.gene95472:CDS |
| TTCGCAGTTTCATTGTTGCC+TGG | 0.419426 | 1.3:+52526927 | MS.gene95472:CDS |
| CGTCAAAGGTTTAGCTCGCT+TGG | 0.420509 | 1.3:+52528882 | MS.gene95472:CDS |
| GCAGAGGTGTTGGTGGTTAA+CGG | 0.421525 | 1.3:-52522159 | None:intergenic |
| ATCTCAGTGAGGAAAACTTC+TGG | 0.421709 | 1.3:-52527736 | None:intergenic |
| AGAAGTTTCATATGTTCTTC+AGG | 0.428141 | 1.3:-52529398 | None:intergenic |
| CTCCGACAAACCTGCAATGC+TGG | 0.428906 | 1.3:-52526993 | None:intergenic |
| CTAAAGGGAAAATCTTCATC+AGG | 0.430536 | 1.3:-52524450 | None:intergenic |
| TGGATCAGCCCTTGTTGCAA+TGG | 0.440463 | 1.3:+52525111 | MS.gene95472:CDS |
| CAAAGGTAGGCATTCTTTCA+AGG | 0.441898 | 1.3:-52523402 | None:intergenic |
| AGATGATATTGGGCAAGATA+TGG | 0.443019 | 1.3:+52525621 | MS.gene95472:CDS |
| ATGCACTTGCTTACTCTTCG+TGG | 0.446295 | 1.3:+52525425 | MS.gene95472:CDS |
| AGGAACTAAGGGAGCCCAAC+AGG | 0.447331 | 1.3:+52523361 | MS.gene95472:CDS |
| TGCTTGATCGGCAGAAAGTA+AGG | 0.447864 | 1.3:+52530551 | MS.gene95472:CDS |
| ACTGCTCGCTTGCTTGATGC+TGG | 0.451373 | 1.3:+52523641 | MS.gene95472:CDS |
| TAAATTGCATATGTCATCGT+TGG | 0.452485 | 1.3:-52522108 | None:intergenic |
| AACAGAAAATTTGAGGGCAT+TGG | 0.453453 | 1.3:+52525684 | MS.gene95472:CDS |
| CCATTATGCGCCTAGTGACT+AGG | 0.453764 | 1.3:-52523490 | None:intergenic |
| TCGAGCAGGACAAATGTAGA+TGG | 0.455711 | 1.3:-52528949 | None:intergenic |
| GTAAGAAGGCAATCCCATTT+GGG | 0.457342 | 1.3:+52523215 | MS.gene95472:CDS |
| GCAATCAAGTCTATGGCGTT+TGG | 0.458967 | 1.3:-52527443 | None:intergenic |
| CCGTCTGTTCCCTTTCCTCC+CGG | 0.460840 | 1.3:-52530660 | None:intergenic |
| TCTTCAGCTTCCAAATTCAA+TGG | 0.460919 | 1.3:-52525160 | None:intergenic |
| AAGCTGGTGGAGATATTAAG+AGG | 0.462137 | 1.3:+52530827 | MS.gene95472:CDS |
| AGACACAGCTAAAAGCTTCA+AGG | 0.462553 | 1.3:+52525480 | MS.gene95472:CDS |
| CTTGAAGGCAAGAGTGCCTC+TGG | 0.463007 | 1.3:+52530970 | MS.gene95472:CDS |
| GTGTTGGTGGTTAACGGCGG+TGG | 0.463079 | 1.3:-52522153 | None:intergenic |
| CTGGGGAAGAAGGGAGGTTG+TGG | 0.464578 | 1.3:-52522217 | None:intergenic |
| TCCCTAATACGTCCAATCAT+AGG | 0.465765 | 1.3:-52525271 | None:intergenic |
| ACGGTTGCACTTATCATATG+TGG | 0.468050 | 1.3:-52528862 | None:intergenic |
| GTTTCATATGTTCTTCAGGC+AGG | 0.470768 | 1.3:-52529394 | None:intergenic |
| TTCCGGTACGATGCGGTTCA+AGG | 0.471050 | 1.3:-52522267 | None:intergenic |
| ATGAATCTCAATCAGTTCTC+AGG | 0.474206 | 1.3:+52526738 | MS.gene95472:CDS |
| ATACCTTTGATTTCGAGTCT+TGG | 0.476758 | 1.3:-52527537 | None:intergenic |
| TTCATAGGGATAGTGTTCAT+TGG | 0.476869 | 1.3:+52522486 | MS.gene95472:CDS |
| AGTATACCTCTCATAAAGTA+AGG | 0.479237 | 1.3:-52524399 | None:intergenic |
| CTGGATGAATCAAGGAGATC+AGG | 0.479568 | 1.3:+52523943 | MS.gene95472:CDS |
| TAGACAAAACAAGAACATAA+AGG | 0.479604 | 1.3:+52525585 | MS.gene95472:CDS |
| AAATATGCGACTGGGGAAGA+AGG | 0.485097 | 1.3:-52522227 | None:intergenic |
| TTTCCAGTGTAAGCCCTACC+AGG | 0.485366 | 1.3:-52530787 | None:intergenic |
| CATTATGCGCCTAGTGACTA+GGG | 0.486726 | 1.3:-52523489 | None:intergenic |
| AAAGAAGAACCTGATATTCG+TGG | 0.488875 | 1.3:+52525532 | MS.gene95472:CDS |
| TGGTCAGGTGGATTAGGTTC+CGG | 0.488914 | 1.3:-52522284 | None:intergenic |
| CCTAGCATCATATTCTGAAT+CGG | 0.488966 | 1.3:-52530695 | None:intergenic |
| TGAAGGACGTTTGATTATCC+GGG | 0.489005 | 1.3:+52530642 | MS.gene95472:CDS |
| TCTCCTCGTCTCCAAATGCA+TGG | 0.489991 | 1.3:-52528662 | None:intergenic |
| TAGTTAGACCTGTTTCCTAA+AGG | 0.491566 | 1.3:-52524466 | None:intergenic |
| CTTGGACTGTTAAGAAGTAA+AGG | 0.492219 | 1.3:-52527519 | None:intergenic |
| CATCTCATCATCGTCTGACC+TGG | 0.494658 | 1.3:-52530608 | None:intergenic |
| TTCGCATTTGTTGATTCATA+GGG | 0.495983 | 1.3:+52522472 | MS.gene95472:CDS |
| AGTCATTTGTCTGCAAGGTC+CGG | 0.497944 | 1.3:+52530730 | MS.gene95472:CDS |
| AGGTTGCAACAGAAAATTTG+AGG | 0.498991 | 1.3:+52525677 | MS.gene95472:CDS |
| TCCTTCTTCAACACAGCTAC+GGG | 0.499484 | 1.3:-52522356 | None:intergenic |
| CAAGCGAGCTAAACCTTTGA+CGG | 0.500697 | 1.3:-52528881 | None:intergenic |
| AAATGCTGGTGAAGGAACTA+AGG | 0.500927 | 1.3:+52523349 | MS.gene95472:CDS |
| TATTAGGGAGAAGGCTCAAA+AGG | 0.501198 | 1.3:+52525285 | MS.gene95472:CDS |
| GAGTCGTCGGCCACAACATA+GGG | 0.502468 | 1.3:+52530900 | MS.gene95472:CDS |
| CGGAGAAGAACAGCAGAGCC+TGG | 0.503610 | 1.3:+52530769 | MS.gene95472:CDS |
| TTTGATTATCCGGGAGGAAA+GGG | 0.504061 | 1.3:+52530651 | MS.gene95472:CDS |
| AGTGAGGAAAACTTCTGGCC+AGG | 0.505041 | 1.3:-52527731 | None:intergenic |
| GTTTGATTATCCGGGAGGAA+AGG | 0.505910 | 1.3:+52530650 | MS.gene95472:CDS |
| CTCCTTGAACCGCATCGTAC+CGG | 0.508711 | 1.3:+52522265 | MS.gene95472:CDS |
| ATGATAAGTGCAACCGTCAA+AGG | 0.509071 | 1.3:+52528868 | MS.gene95472:CDS |
| GAGTTTGATTAAACAGGGAG+TGG | 0.510391 | 1.3:+52523909 | MS.gene95472:CDS |
| CTCCTTCTTCAACACAGCTA+CGG | 0.511006 | 1.3:-52522357 | None:intergenic |
| TTGGATTCGTTGTTGAATGT+TGG | 0.511127 | 1.3:-52522089 | None:intergenic |
| GATCATGGAAGGAATCGAAA+TGG | 0.513498 | 1.3:+52522061 | None:intergenic |
| GAAGAACAGCAGAGCCTGGT+AGG | 0.515608 | 1.3:+52530773 | MS.gene95472:CDS |
| GAAGGATAGTTACAAAATGA+AGG | 0.516245 | 1.3:-52525457 | None:intergenic |
| TTAGATCTGAGAATCTCAAA+AGG | 0.517424 | 1.3:+52530581 | MS.gene95472:CDS |
| TGAGTCGTCGGCCACAACAT+AGG | 0.517871 | 1.3:+52530899 | MS.gene95472:CDS |
| AGATCAAGGAGCGGAAAGAG+AGG | 0.518453 | 1.3:+52529509 | MS.gene95472:intron |
| GCTTATCACGAAGTGTGGAT+TGG | 0.518922 | 1.3:+52529355 | MS.gene95472:CDS |
| GCATCATATTCTGAATCGGC+TGG | 0.519730 | 1.3:-52530691 | None:intergenic |
| GATCATTATTTGCAGGATGT+TGG | 0.519934 | 1.3:+52527086 | MS.gene95472:intron |
| AGTTCTTACAACAGGTAAGA+AGG | 0.519955 | 1.3:+52523201 | MS.gene95472:intron |
| CTGAAATCTACAAAAGATGA+TGG | 0.520706 | 1.3:+52525751 | MS.gene95472:CDS |
| TCAAGTGGCCAATATGCATA+AGG | 0.523498 | 1.3:-52530865 | None:intergenic |
| TGGTGGAGATATTAAGAGGA+AGG | 0.524645 | 1.3:+52530831 | MS.gene95472:CDS |
| CTGCCGACAGGATGATTCAA+TGG | 0.525113 | 1.3:+52527708 | MS.gene95472:intron |
| TTCAGGTCCCATTGCAACAA+GGG | 0.527489 | 1.3:-52525119 | None:intergenic |
| CAACACCTCTGCACCGTCAT+CGG | 0.530998 | 1.3:+52522170 | MS.gene95472:CDS |
| AAGTTCTCTCGATCATACTC+AGG | 0.531090 | 1.3:+52527132 | MS.gene95472:CDS |
| GTGCAGCTTCATACGTGCCT+TGG | 0.531128 | 1.3:+52525091 | MS.gene95472:intron |
| GCCCGTAGCTGTGTTGAAGA+AGG | 0.531646 | 1.3:+52522355 | MS.gene95472:CDS |
| AGCCACTTGATTTGCTTGAT+CGG | 0.532416 | 1.3:+52530539 | MS.gene95472:CDS |
| GACATCACGGAGGCCCAAAT+GGG | 0.532838 | 1.3:-52523228 | None:intergenic |
| GATAATACTGGCTCTTAAAG+AGG | 0.532942 | 1.3:+52527756 | MS.gene95472:CDS |
| GTCTGAACCATCTATTCTGT+TGG | 0.538070 | 1.3:-52526687 | None:intergenic |
| CGTCATCGGCGCAATGTCAC+AGG | 0.538926 | 1.3:+52522184 | MS.gene95472:CDS |
| TATGGCCAAAGAACAAGTCT+TGG | 0.539050 | 1.3:+52525639 | MS.gene95472:CDS |
| AGCAAGGTCAGAGAATTCAT+AGG | 0.539362 | 1.3:-52528905 | None:intergenic |
| CTCTCCGAATTCTTCGACGA+CGG | 0.540604 | 1.3:-52522422 | None:intergenic |
| CAAGAACATACAAAACCTGT+TGG | 0.540635 | 1.3:-52523376 | None:intergenic |
| AGATAACTCTGGATGAATCA+AGG | 0.542333 | 1.3:+52523935 | MS.gene95472:CDS |
| TGTTGGTGTCATGCAGAAGA+AGG | 0.543631 | 1.3:+52527103 | MS.gene95472:CDS |
| GTTGCGCCGAAATATGCGAC+TGG | 0.543868 | 1.3:-52522236 | None:intergenic |
| GACAGGATGATTCAATGGCC+TGG | 0.544833 | 1.3:+52527713 | MS.gene95472:intron |
| AGAATCTCAAAAGGAAGTCC+AGG | 0.546874 | 1.3:+52530590 | MS.gene95472:CDS |
| GGGATGCTTATCACGAAGTG+TGG | 0.547145 | 1.3:+52529350 | MS.gene95472:CDS |
| ATTCCATTTCCGATCATGGA+AGG | 0.548811 | 1.3:+52522050 | None:intergenic |
| TTATCACTATGCTGCTGCCT+GGG | 0.549257 | 1.3:+52524014 | MS.gene95472:CDS |
| CACCTCAAGTAGTGCTTCAG+AGG | 0.550298 | 1.3:-52523555 | None:intergenic |
| GGTTGCAACAGAAAATTTGA+GGG | 0.550727 | 1.3:+52525678 | MS.gene95472:CDS |
| TTTGCAGCAGCCCTATGTTG+TGG | 0.551398 | 1.3:-52530910 | None:intergenic |
| TCTTACTGATTCAAGACCGA+AGG | 0.552941 | 1.3:+52522547 | MS.gene95472:CDS |
| GATTCGTCAGACAAGTGCTC+AGG | 0.554011 | 1.3:-52530508 | None:intergenic |
| TCAACTAACCTTGCGTATGT+TGG | 0.557578 | 1.3:-52529423 | None:intergenic |
| TTTCAAAAGCAACTACATCC+AGG | 0.559469 | 1.3:+52529569 | MS.gene95472:CDS |
| CTGATAGTCATTTGTCTGCA+AGG | 0.559535 | 1.3:+52530725 | MS.gene95472:CDS |
| CGCCCATGCATTTGGAGACG+AGG | 0.560462 | 1.3:+52528659 | MS.gene95472:CDS |
| CTGTGACATTGCGCCGATGA+CGG | 0.561333 | 1.3:-52522183 | None:intergenic |
| TCAAATGAGATTTCTGGAGA+TGG | 0.561668 | 1.3:+52523608 | MS.gene95472:CDS |
| CGATGACGGTGCAGAGGTGT+TGG | 0.562762 | 1.3:-52522169 | None:intergenic |
| TGGTTGAGTGTTTGTTTCAG+TGG | 0.562799 | 1.3:+52529165 | MS.gene95472:CDS |
| CTCCTCGTCTCCAAATGCAT+GGG | 0.565443 | 1.3:-52528661 | None:intergenic |
| GCATTTGGAGACGAGGAGAA+AGG | 0.567246 | 1.3:+52528666 | MS.gene95472:CDS |
| AAGAACATACAAAACCTGTT+GGG | 0.567767 | 1.3:-52523375 | None:intergenic |
| CAGGTCAGACGATGATGAGA+TGG | 0.570043 | 1.3:+52530609 | MS.gene95472:CDS |
| AGGGACTGACAGTGTCATCA+AGG | 0.571222 | 1.3:+52525395 | MS.gene95472:CDS |
| GATTGGACGTATTAGGGAGA+AGG | 0.572003 | 1.3:+52525276 | MS.gene95472:CDS |
| TATGGCGTTTGGCAGAAGAA+TGG | 0.572032 | 1.3:-52527432 | None:intergenic |
| AATATGCGACTGGGGAAGAA+GGG | 0.573040 | 1.3:-52522226 | None:intergenic |
| TTTGGCATCTGAACATGAAG+AGG | 0.575489 | 1.3:+52523831 | MS.gene95472:CDS |
| TATCACGAAGTGTGGATTGG+AGG | 0.576082 | 1.3:+52529358 | MS.gene95472:CDS |
| GAACTCAACTTTGACTGCCT+CGG | 0.577235 | 1.3:-52527497 | None:intergenic |
| GGGAGTGGATCAGATAACTC+TGG | 0.577650 | 1.3:+52523924 | MS.gene95472:CDS |
| TGGTAGGGCTTACACTGGAA+AGG | 0.581578 | 1.3:+52530789 | MS.gene95472:CDS |
| CCGATTCAGAATATGATGCT+AGG | 0.582895 | 1.3:+52530695 | MS.gene95472:CDS |
| CTATTAGCATCCGCGAGTGA+AGG | 0.584934 | 1.3:+52523275 | MS.gene95472:CDS |
| TGCGTCAACCCCTAGTCACT+AGG | 0.585009 | 1.3:+52523480 | MS.gene95472:CDS |
| AACTCTCCTTACTTTATGAG+AGG | 0.585087 | 1.3:+52524393 | MS.gene95472:CDS |
| TACAGGCTAATAAGAAAACC+AGG | 0.585447 | 1.3:+52528607 | MS.gene95472:intron |
| ACCTAATTTGTGAAACATTG+CGG | 0.586553 | 1.3:-52524058 | None:intergenic |
| GTAGCCAAATCACAAGCAGA+AGG | 0.588275 | 1.3:+52529119 | MS.gene95472:CDS |
| AAGAACAGCAGAGCCTGGTA+GGG | 0.589719 | 1.3:+52530774 | MS.gene95472:CDS |
| TTTCAGGTCCCATTGCAACA+AGG | 0.591569 | 1.3:-52525120 | None:intergenic |
| TTTGAGATCACTGAAAACAC+TGG | 0.591847 | 1.3:-52523714 | None:intergenic |
| GATTCGATGACGTGGTCAGG+TGG | 0.592836 | 1.3:-52522296 | None:intergenic |
| TTTGGAGACGAGGAGAAAGG+TGG | 0.594862 | 1.3:+52528669 | MS.gene95472:CDS |
| TTGCGCCGAAATATGCGACT+GGG | 0.595787 | 1.3:-52522235 | None:intergenic |
| AATCAAAAGCAGTTAAAGCA+AGG | 0.596980 | 1.3:-52528921 | None:intergenic |
| TTGCAACAAGGGCTGATCCA+AGG | 0.597962 | 1.3:-52525108 | None:intergenic |
| TGACGGTGCAGAGGTGTTGG+TGG | 0.598610 | 1.3:-52522166 | None:intergenic |
| CTGCCTCGGACTTCATGACA+TGG | 0.599170 | 1.3:-52527483 | None:intergenic |
| ACTTTGCAGCTTGAGAAGCA+GGG | 0.599256 | 1.3:+52525376 | MS.gene95472:intron |
| TTGGAGACGAGGAGAAAGGT+GGG | 0.601042 | 1.3:+52528670 | MS.gene95472:CDS |
| AATCATAGGCAAAATTTCGT+CGG | 0.602575 | 1.3:-52525257 | None:intergenic |
| GAAAGTTTATCAAGACATCA+CGG | 0.603730 | 1.3:-52523241 | None:intergenic |
| GAGTTTGATGGAGACAGCAA+AGG | 0.604231 | 1.3:+52530117 | MS.gene95472:CDS |
| CCGGGAGGAAAGGGAACAGA+CGG | 0.606596 | 1.3:+52530660 | MS.gene95472:CDS |
| AACGGCAAGGCAATTTCTAG+AGG | 0.609750 | 1.3:+52530159 | MS.gene95472:CDS |
| GGTGGAGCAAATGCAAATGC+TGG | 0.613071 | 1.3:+52523335 | MS.gene95472:CDS |
| GATGAGAGTTTGATTAAACA+GGG | 0.613401 | 1.3:+52523904 | MS.gene95472:CDS |
| AGTCCAAGACTCGAAATCAA+AGG | 0.613427 | 1.3:+52527534 | MS.gene95472:CDS |
| TTCCTCTGAAGCACTACTTG+AGG | 0.615882 | 1.3:+52523553 | MS.gene95472:CDS |
| ACGGCAAGGCAATTTCTAGA+GGG | 0.621924 | 1.3:+52530160 | MS.gene95472:CDS |
| TGCCGATCAAGCAAATCAAG+TGG | 0.625596 | 1.3:-52530541 | None:intergenic |
| TTGCGCCGATGACGGTGCAG+AGG | 0.626574 | 1.3:-52522175 | None:intergenic |
| GAGCGGAAAGAGAGGAACCG+AGG | 0.627235 | 1.3:+52529517 | MS.gene95472:CDS |
| TGCTGCTGATTTGAGATGTG+TGG | 0.628832 | 1.3:-52530193 | None:intergenic |
| GATTAGGTTCCGGTACGATG+CGG | 0.630939 | 1.3:-52522274 | None:intergenic |
| GGCAAGGCAATTTCTAGAGG+GGG | 0.631149 | 1.3:+52530162 | MS.gene95472:CDS |
| AATGCTGGTGAAGGAACTAA+GGG | 0.631940 | 1.3:+52523350 | MS.gene95472:CDS |
| TAATAAGAAAACCAGGAACA+GGG | 0.632518 | 1.3:+52528614 | MS.gene95472:CDS |
| TCCAGAAATCTCATTTGATG+AGG | 0.632522 | 1.3:-52523603 | None:intergenic |
| GTCAGACGATGATGAGATGG+AGG | 0.633184 | 1.3:+52530612 | MS.gene95472:CDS |
| TTGAGATCACTGAAAACACT+GGG | 0.634526 | 1.3:-52523713 | None:intergenic |
| GCAAATGCAAATGCTGGTGA+AGG | 0.636144 | 1.3:+52523341 | MS.gene95472:CDS |
| GGAGGAAAGGGAACAGACGG+AGG | 0.636748 | 1.3:+52530663 | MS.gene95472:CDS |
| GTGCTAAATCTGAAGAAACC+AGG | 0.641226 | 1.3:+52529539 | MS.gene95472:CDS |
| CGGCAAGGCAATTTCTAGAG+GGG | 0.645153 | 1.3:+52530161 | MS.gene95472:CDS |
| GAGATGGAGGTAGATTCTGA+AGG | 0.647548 | 1.3:+52530625 | MS.gene95472:CDS |
| ATGCGACTGGGGAAGAAGGG+AGG | 0.648895 | 1.3:-52522223 | None:intergenic |
| TTTCTTCAGATTTAGCACCT+CGG | 0.650186 | 1.3:-52529534 | None:intergenic |
| AGTTCTCTCGATCATACTCA+GGG | 0.654484 | 1.3:+52527133 | MS.gene95472:CDS |
| GAGCCTGGTAGGGCTTACAC+TGG | 0.656129 | 1.3:+52530784 | MS.gene95472:CDS |
| ACTTCTGACCAACATACGCA+AGG | 0.669281 | 1.3:+52529415 | MS.gene95472:CDS |
| TTGTGAGCTTAGGTTGCTCG+CGG | 0.669687 | 1.3:+52528823 | MS.gene95472:intron |
| TGCAGAATACCTGAACGGCA+AGG | 0.670993 | 1.3:+52530146 | MS.gene95472:CDS |
| CCGGAACTAAAGCCCAAAAG+CGG | 0.676318 | 1.3:+52530749 | MS.gene95472:CDS |
| TTGTAAAACAGATCAAGGAG+CGG | 0.680605 | 1.3:+52529500 | MS.gene95472:intron |
| AGGACGTTTGATTATCCGGG+AGG | 0.685208 | 1.3:+52530645 | MS.gene95472:CDS |
| AGTGATGCAGAATACCTGAA+CGG | 0.696328 | 1.3:+52530141 | MS.gene95472:CDS |
| AAATCTACAAAAGATGATGG+TGG | 0.698268 | 1.3:+52525754 | MS.gene95472:CDS |
| CGGTACGATGCGGTTCAAGG+AGG | 0.699527 | 1.3:-52522264 | None:intergenic |
| CTTCATAGAAAGCACGCCAG+AGG | 0.701114 | 1.3:-52530986 | None:intergenic |
| TTAAAAGCGATTCGATGACG+TGG | 0.701711 | 1.3:-52522304 | None:intergenic |
| ACTCCATGTCATGAAGTCCG+AGG | 0.707627 | 1.3:+52527480 | MS.gene95472:CDS |
| ATTATGCGCCTAGTGACTAG+GGG | 0.709999 | 1.3:-52523488 | None:intergenic |
| AAAGAATAAAGAGATAACCA+AGG | 0.711747 | 1.3:+52528975 | MS.gene95472:CDS |
| TGCGCCGAAATATGCGACTG+GGG | 0.717004 | 1.3:-52522234 | None:intergenic |
| GAGGTGTTGGTGGTTAACGG+CGG | 0.724078 | 1.3:-52522156 | None:intergenic |
| GCAAATGCATCTGAAGAGCG+TGG | 0.729213 | 1.3:+52529145 | MS.gene95472:CDS |
| CGTTTGGCAGAAGAATGGCA+AGG | 0.732352 | 1.3:-52527427 | None:intergenic |
| GAGCCAGTATTATCTCAGTG+AGG | 0.735723 | 1.3:-52527747 | None:intergenic |
| AGTTTATCAAGACATCACGG+AGG | 0.840719 | 1.3:-52523238 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 52522065 | 52531053 | 52522065 | ID=MS.gene95472 |
| chr1.3 | mRNA | 52522065 | 52531053 | 52522065 | ID=MS.gene95472.t1;Parent=MS.gene95472 |
| chr1.3 | exon | 52522065 | 52522568 | 52522065 | ID=MS.gene95472.t1.exon1;Parent=MS.gene95472.t1 |
| chr1.3 | CDS | 52522065 | 52522568 | 52522065 | ID=cds.MS.gene95472.t1;Parent=MS.gene95472.t1 |
| chr1.3 | exon | 52523215 | 52523737 | 52523215 | ID=MS.gene95472.t1.exon2;Parent=MS.gene95472.t1 |
| chr1.3 | CDS | 52523215 | 52523737 | 52523215 | ID=cds.MS.gene95472.t1;Parent=MS.gene95472.t1 |
| chr1.3 | exon | 52523827 | 52524078 | 52523827 | ID=MS.gene95472.t1.exon3;Parent=MS.gene95472.t1 |
| chr1.3 | CDS | 52523827 | 52524078 | 52523827 | ID=cds.MS.gene95472.t1;Parent=MS.gene95472.t1 |
| chr1.3 | exon | 52524388 | 52524479 | 52524388 | ID=MS.gene95472.t1.exon4;Parent=MS.gene95472.t1 |
| chr1.3 | CDS | 52524388 | 52524479 | 52524388 | ID=cds.MS.gene95472.t1;Parent=MS.gene95472.t1 |
| chr1.3 | exon | 52525097 | 52525306 | 52525097 | ID=MS.gene95472.t1.exon5;Parent=MS.gene95472.t1 |
| chr1.3 | CDS | 52525097 | 52525306 | 52525097 | ID=cds.MS.gene95472.t1;Parent=MS.gene95472.t1 |
| chr1.3 | exon | 52525385 | 52525786 | 52525385 | ID=MS.gene95472.t1.exon6;Parent=MS.gene95472.t1 |
| chr1.3 | CDS | 52525385 | 52525786 | 52525385 | ID=cds.MS.gene95472.t1;Parent=MS.gene95472.t1 |
| chr1.3 | exon | 52526590 | 52526759 | 52526590 | ID=MS.gene95472.t1.exon7;Parent=MS.gene95472.t1 |
| chr1.3 | CDS | 52526590 | 52526759 | 52526590 | ID=cds.MS.gene95472.t1;Parent=MS.gene95472.t1 |
| chr1.3 | exon | 52526911 | 52527004 | 52526911 | ID=MS.gene95472.t1.exon8;Parent=MS.gene95472.t1 |
| chr1.3 | CDS | 52526911 | 52527004 | 52526911 | ID=cds.MS.gene95472.t1;Parent=MS.gene95472.t1 |
| chr1.3 | exon | 52527101 | 52527154 | 52527101 | ID=MS.gene95472.t1.exon9;Parent=MS.gene95472.t1 |
| chr1.3 | CDS | 52527101 | 52527154 | 52527101 | ID=cds.MS.gene95472.t1;Parent=MS.gene95472.t1 |
| chr1.3 | exon | 52527364 | 52527555 | 52527364 | ID=MS.gene95472.t1.exon10;Parent=MS.gene95472.t1 |
| chr1.3 | CDS | 52527364 | 52527555 | 52527364 | ID=cds.MS.gene95472.t1;Parent=MS.gene95472.t1 |
| chr1.3 | exon | 52527718 | 52527777 | 52527718 | ID=MS.gene95472.t1.exon11;Parent=MS.gene95472.t1 |
| chr1.3 | CDS | 52527718 | 52527777 | 52527718 | ID=cds.MS.gene95472.t1;Parent=MS.gene95472.t1 |
| chr1.3 | exon | 52528612 | 52528725 | 52528612 | ID=MS.gene95472.t1.exon12;Parent=MS.gene95472.t1 |
| chr1.3 | CDS | 52528612 | 52528725 | 52528612 | ID=cds.MS.gene95472.t1;Parent=MS.gene95472.t1 |
| chr1.3 | exon | 52528835 | 52528996 | 52528835 | ID=MS.gene95472.t1.exon13;Parent=MS.gene95472.t1 |
| chr1.3 | CDS | 52528835 | 52528996 | 52528835 | ID=cds.MS.gene95472.t1;Parent=MS.gene95472.t1 |
| chr1.3 | exon | 52529092 | 52529220 | 52529092 | ID=MS.gene95472.t1.exon14;Parent=MS.gene95472.t1 |
| chr1.3 | CDS | 52529092 | 52529220 | 52529092 | ID=cds.MS.gene95472.t1;Parent=MS.gene95472.t1 |
| chr1.3 | exon | 52529335 | 52529436 | 52529335 | ID=MS.gene95472.t1.exon15;Parent=MS.gene95472.t1 |
| chr1.3 | CDS | 52529335 | 52529436 | 52529335 | ID=cds.MS.gene95472.t1;Parent=MS.gene95472.t1 |
| chr1.3 | exon | 52529511 | 52529590 | 52529511 | ID=MS.gene95472.t1.exon16;Parent=MS.gene95472.t1 |
| chr1.3 | CDS | 52529511 | 52529590 | 52529511 | ID=cds.MS.gene95472.t1;Parent=MS.gene95472.t1 |
| chr1.3 | exon | 52530083 | 52530226 | 52530083 | ID=MS.gene95472.t1.exon17;Parent=MS.gene95472.t1 |
| chr1.3 | CDS | 52530083 | 52530226 | 52530083 | ID=cds.MS.gene95472.t1;Parent=MS.gene95472.t1 |
| chr1.3 | exon | 52530480 | 52531053 | 52530480 | ID=MS.gene95472.t1.exon18;Parent=MS.gene95472.t1 |
| chr1.3 | CDS | 52530480 | 52531053 | 52530480 | ID=cds.MS.gene95472.t1;Parent=MS.gene95472.t1 |
| Gene Sequence |
| Protein sequence |
