Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004705.t1 | XP_003590720.2 | 93.7 | 1294 | 81 | 1 | 1 | 1293 | 1 | 1294 | 0.00E+00 | 2253 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004705.t1 | Q5ZKD5 | 25.3 | 1295 | 791 | 33 | 5 | 1245 | 91 | 1263 | 1.3e-73 | 280.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004705.t1 | G7I2N3 | 93.7 | 1294 | 81 | 1 | 1 | 1293 | 1 | 1294 | 0.0e+00 | 2253.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004705.t1 | MTR_1g072970 | 94.668 | 1294 | 68 | 1 | 1 | 1293 | 1 | 1294 | 0.0 | 2499 |
| MS.gene004705.t1 | MTR_1g072890 | 86.472 | 1301 | 152 | 5 | 1 | 1290 | 1 | 1288 | 0.0 | 2265 |
| MS.gene004705.t1 | MTR_1g072890 | 85.010 | 1034 | 131 | 5 | 1 | 1023 | 1 | 1021 | 0.0 | 1756 |
| MS.gene004705.t1 | MTR_1g053255 | 29.244 | 1084 | 707 | 26 | 7 | 1066 | 3 | 1050 | 1.24e-103 | 356 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004705.t1 | AT2G34357 | 51.244 | 1286 | 575 | 21 | 16 | 1288 | 24 | 1270 | 0.0 | 1172 |
| MS.gene004705.t1 | AT4G23540 | 29.079 | 1097 | 693 | 28 | 5 | 1061 | 10 | 1061 | 3.58e-110 | 374 |
Find 256 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCAGCTTCCAAATTTAA+TGG | 0.155327 | 1.1:+55058252 | None:intergenic |
| ATCCCTTATACCATTAAATT+TGG | 0.179078 | 1.1:-55058262 | MS.gene004705:CDS |
| CTTCCAAATTTAATGGTATA+AGG | 0.189743 | 1.1:+55058259 | None:intergenic |
| ACCTCATCAACTGAGATTTC+TGG | 0.202537 | 1.1:-55060794 | MS.gene004705:CDS |
| CTGCTGTTCTTCTTCGCTTC+TGG | 0.206041 | 1.1:+55050889 | None:intergenic |
| TGAGGTTCTGCTTGGGCTTA+TGG | 0.208576 | 1.1:-55056165 | MS.gene004705:CDS |
| CAGATCTTTCAACAAATTAT+TGG | 0.220117 | 1.1:+55057709 | None:intergenic |
| ATTTATCCGTCTCAAATAAA+TGG | 0.226752 | 1.1:-55058230 | MS.gene004705:CDS |
| TCCTCTATGTTTCACAAATT+AGG | 0.227959 | 1.1:-55060338 | MS.gene004705:intron |
| CATATTATTCCACGAATATT+AGG | 0.238036 | 1.1:+55057884 | None:intergenic |
| TTTCACATTTGTTGATTCAT+AGG | 0.241660 | 1.1:-55062190 | MS.gene004705:CDS |
| GGCCAATCTTGGTTTATTAA+AGG | 0.244569 | 1.1:-55054495 | MS.gene004705:CDS |
| TTCTCCCTGCAGGCCAATCT+TGG | 0.277069 | 1.1:-55054506 | MS.gene004705:intron |
| ATTATACAAGACTTGTTCTT+TGG | 0.291284 | 1.1:+55057781 | None:intergenic |
| CAATCCTTCTGCTTGTGATT+TGG | 0.298079 | 1.1:+55054463 | None:intergenic |
| TGCCTCTGTGGCTGCAAGTA+TGG | 0.299117 | 1.1:+55060541 | None:intergenic |
| TTGGAGAGTGGTGTTGTTCA+TGG | 0.303206 | 1.1:-55062224 | MS.gene004705:CDS |
| AGTAATAAAGCCAGCATTGC+AGG | 0.304957 | 1.1:-55056523 | MS.gene004705:intron |
| TCGCTTCTGGCCTTTAGTTC+CGG | 0.307234 | 1.1:+55050902 | None:intergenic |
| ACACACTTGTTTACTCTTTG+TGG | 0.311562 | 1.1:-55058000 | MS.gene004705:CDS |
| TGATGAAAGTTTGATTAAAC+AGG | 0.311799 | 1.1:-55060492 | MS.gene004705:CDS |
| ATTATCACTATGCTGCTTCT+TGG | 0.316544 | 1.1:-55060382 | MS.gene004705:CDS |
| TGTTATGTTGCCATCGAGTT+TGG | 0.322470 | 1.1:-55062243 | MS.gene004705:CDS |
| AAATCAGCAGTGTCTTCATT+TGG | 0.329028 | 1.1:-55051452 | MS.gene004705:CDS |
| AGCTTGAACCTTATGCATAT+TGG | 0.332365 | 1.1:-55050785 | MS.gene004705:CDS |
| TCCCTTGCTCGTTCAATCAT+AGG | 0.348873 | 1.1:+55058141 | None:intergenic |
| AACCTTTAATAAACCAAGAT+TGG | 0.349531 | 1.1:+55054493 | None:intergenic |
| GTTCCTGTGCGATGCGGTCC+AGG | 0.354576 | 1.1:+55062387 | None:intergenic |
| AAGGTTGCTCGCGGCCTTGT+TGG | 0.356041 | 1.1:-55054754 | MS.gene004705:CDS |
| TAGACAAAACAAGAACATTC+AGG | 0.356460 | 1.1:-55057840 | MS.gene004705:CDS |
| AATAAAGGCAATCAAGTCTA+TGG | 0.356481 | 1.1:+55056108 | None:intergenic |
| CTGTGGTAAATATGACAAAA+AGG | 0.357847 | 1.1:-55050695 | MS.gene004705:CDS |
| TTCTGAATCGTCTACTTTGT+TGG | 0.358506 | 1.1:+55056821 | None:intergenic |
| AGGTTGCTCGCGGCCTTGTT+GGG | 0.364178 | 1.1:-55054753 | MS.gene004705:CDS |
| TCCATCCACATTTGTCCTGC+TGG | 0.368547 | 1.1:-55054638 | MS.gene004705:CDS |
| GAACAGGGCTTATGAAATTC+TGG | 0.371930 | 1.1:-55055000 | MS.gene004705:CDS |
| CCGTTATGCGCCTTGTGACT+AGG | 0.376054 | 1.1:+55060906 | None:intergenic |
| GTGTTGGTGGTTTGCGGCGG+TGG | 0.378305 | 1.1:+55062502 | None:intergenic |
| TTCCAAATTTAATGGTATAA+GGG | 0.379913 | 1.1:+55058260 | None:intergenic |
| CAAGAATATACAAAACTTGT+TGG | 0.382877 | 1.1:+55061020 | None:intergenic |
| TTCTCCTTCAACACAGCAAC+GGG | 0.387031 | 1.1:+55062299 | None:intergenic |
| ATTCTAAAACAGTATATTGT+TGG | 0.389703 | 1.1:-55058198 | MS.gene004705:CDS |
| AACACCTCAAGTAGTGCTTC+GGG | 0.393913 | 1.1:+55060839 | None:intergenic |
| GGGTCAGCTCTTGTTGCAAT+GGG | 0.394671 | 1.1:-55058300 | MS.gene004705:CDS |
| CTTGCAGACAAATGACTATC+AGG | 0.396859 | 1.1:+55050927 | None:intergenic |
| AATCAGCAGTGTCTTCATTT+GGG | 0.400201 | 1.1:-55051451 | MS.gene004705:intron |
| ATCATTTGCATTTGCTCCAC+CGG | 0.400256 | 1.1:+55061096 | None:intergenic |
| GAGTCGTCGGCCACAGCAAC+GGG | 0.401771 | 1.1:-55050742 | MS.gene004705:CDS |
| CATTCAGGATTCAAATGATA+AGG | 0.406494 | 1.1:-55057825 | MS.gene004705:CDS |
| TTTCCTCACTGAGATAATAC+TGG | 0.407293 | 1.1:-55055885 | MS.gene004705:CDS |
| TTCAGGTAGGACAGCTTTAA+CGG | 0.409490 | 1.1:+55054188 | None:intergenic |
| CGAAGCTTGAGGTTCTGCTT+GGG | 0.409869 | 1.1:-55056172 | MS.gene004705:CDS |
| AGAAGTTTCATATGCTCTTC+AGG | 0.409982 | 1.1:+55054171 | None:intergenic |
| TTATCACTATGCTGCTTCTT+GGG | 0.410599 | 1.1:-55060381 | MS.gene004705:CDS |
| CGTTATGCGCCTTGTGACTA+GGG | 0.411687 | 1.1:+55060907 | None:intergenic |
| AATTTCATAAGCCCTGTTCC+TGG | 0.412637 | 1.1:+55055004 | None:intergenic |
| CATGGACTATCAATAAATAA+AGG | 0.414417 | 1.1:+55056093 | None:intergenic |
| TGCAGCTTCATGCGTGCCTT+GGG | 0.415736 | 1.1:-55058320 | MS.gene004705:intron |
| TTCGCAGCTTCATTGTTGCC+TGG | 0.416944 | 1.1:-55056579 | MS.gene004705:CDS |
| AGTTCCCGTTGCTGTGTTGA+AGG | 0.418162 | 1.1:-55062303 | MS.gene004705:CDS |
| TCGAAGCTTGAGGTTCTGCT+TGG | 0.418257 | 1.1:-55056173 | MS.gene004705:CDS |
| AGATGATGGTGGTTGTTTGC+AGG | 0.419096 | 1.1:-55057660 | MS.gene004705:intron |
| TTTGAAGTGGTTAAGAATGT+TGG | 0.419659 | 1.1:+55060952 | None:intergenic |
| ATCTCAGTGAGGAAAACTTC+TGG | 0.421709 | 1.1:+55055893 | None:intergenic |
| TGGGTCAGCTCTTGTTGCAA+TGG | 0.423842 | 1.1:-55058301 | MS.gene004705:CDS |
| ACTGATTGAGACACGTCATT+TGG | 0.425094 | 1.1:+55056777 | None:intergenic |
| ATAGTGACCTGTTTCCTAAA+GGG | 0.427478 | 1.1:+55059071 | None:intergenic |
| CTTGTATAATTACTCGCAAC+AGG | 0.428147 | 1.1:-55057768 | MS.gene004705:CDS |
| TAACACCTCAAGTAGTGCTT+CGG | 0.429890 | 1.1:+55060838 | None:intergenic |
| AGACACAGCTAAAAGTTTCA+AGG | 0.430200 | 1.1:-55057945 | MS.gene004705:CDS |
| CTTAGACAAACCTGCAATGC+TGG | 0.433016 | 1.1:+55056513 | None:intergenic |
| CTTGAAGGCAAGAGTGTCTC+TGG | 0.435014 | 1.1:-55050672 | MS.gene004705:CDS |
| CAGAGCCTGGTAGGGCTGGT+AGG | 0.435386 | 1.1:-55050869 | MS.gene004705:CDS |
| GTGCAGCTTCATGCGTGCCT+TGG | 0.435418 | 1.1:-55058321 | MS.gene004705:intron |
| TCGGCCACAGCAACGGGCTG+CGG | 0.436473 | 1.1:-55050736 | MS.gene004705:CDS |
| AGAGCCTGGTAGGGCTGGTA+GGG | 0.440903 | 1.1:-55050868 | MS.gene004705:CDS |
| TGCTTGACCGGCAGAAAGTA+AGG | 0.447864 | 1.1:-55051100 | MS.gene004705:CDS |
| GGATTATAGTAGGCAAGATA+TGG | 0.448758 | 1.1:-55057804 | MS.gene004705:CDS |
| ACTGCTCGCTTGCTTGATGC+TGG | 0.451373 | 1.1:-55060755 | MS.gene004705:CDS |
| GATTATTATTTGTAGGATGT+TGG | 0.451539 | 1.1:-55056420 | MS.gene004705:intron |
| GAAAGGAAGGCATTCTTTCA+AGG | 0.451620 | 1.1:+55060994 | None:intergenic |
| ATGAGTCGATGGCGATGGCC+TGG | 0.451976 | 1.1:-55055916 | MS.gene004705:CDS |
| TGAATTGCATATATCATCGT+TGG | 0.452485 | 1.1:+55062547 | None:intergenic |
| CTGCGCCACATGCTCATCCC+TGG | 0.456440 | 1.1:-55062405 | MS.gene004705:CDS |
| ACAGAGGTGTTGGTGGTTTG+CGG | 0.458316 | 1.1:+55062496 | None:intergenic |
| GCAATCAAGTCTATGGCGTT+TGG | 0.458967 | 1.1:+55056115 | None:intergenic |
| TGAGATAATACTGGCTCTAA+AGG | 0.459212 | 1.1:-55055876 | MS.gene004705:CDS |
| GTGCGTCGATGAGGTGGATA+GGG | 0.459631 | 1.1:+55062357 | None:intergenic |
| AAAGAAGAACCTAATATTCG+TGG | 0.460647 | 1.1:-55057893 | MS.gene004705:CDS |
| AAGCTGGTGGAGATATTAAG+AGG | 0.462330 | 1.1:-55050815 | MS.gene004705:CDS |
| AGTCAAAGGTTTAGCTCGCT+TGG | 0.462774 | 1.1:-55054704 | MS.gene004705:CDS |
| TTCACATTTGTTGATTCATA+GGG | 0.466227 | 1.1:-55062189 | MS.gene004705:CDS |
| CAACGGGCTGCGGCAAGAAA+AGG | 0.470152 | 1.1:-55050726 | MS.gene004705:CDS |
| ACAGCAGAGCCTGGTAGGGC+TGG | 0.471151 | 1.1:-55050873 | MS.gene004705:CDS |
| TTCATAGGGATAGTGTTCAT+TGG | 0.476869 | 1.1:-55062175 | MS.gene004705:CDS |
| ACTGTTGCACTTATCATATG+TGG | 0.478961 | 1.1:+55054724 | None:intergenic |
| AGTATACCTCTCATAAAGTA+AGG | 0.479237 | 1.1:+55059137 | None:intergenic |
| AAGAATATACAAAACTTGTT+GGG | 0.480754 | 1.1:+55061021 | None:intergenic |
| CTTCATTTACAGGGTACAAT+CGG | 0.483174 | 1.1:-55056930 | MS.gene004705:intron |
| ACGTGTCTCAATCAGTTCTC+AGG | 0.484837 | 1.1:-55056770 | MS.gene004705:intron |
| GCAAAGTAGACGGAACCATA+TGG | 0.487129 | 1.1:-55051573 | MS.gene004705:CDS |
| ACTTGAAAGGTTTCTACTGC+TGG | 0.487430 | 1.1:-55061119 | MS.gene004705:CDS |
| AGCCACTTGATTTGCTTGAC+CGG | 0.490414 | 1.1:-55051112 | MS.gene004705:CDS |
| TGGTTGAGTGTTTGTTTAAG+TGG | 0.490627 | 1.1:-55054421 | MS.gene004705:CDS |
| GATAGTGACCTGTTTCCTAA+AGG | 0.491830 | 1.1:+55059070 | None:intergenic |
| TTGGATGAATCAAGGATGTC+AGG | 0.493009 | 1.1:-55060452 | MS.gene004705:CDS |
| TTCTCTTCCAACAGGTAAGA+AGG | 0.494757 | 1.1:-55061228 | MS.gene004705:intron |
| CGTTTGATCATCCGTGAGGA+AGG | 0.495561 | 1.1:-55051002 | MS.gene004705:CDS |
| TCGTTTGTTCCCCTTCCTCA+CGG | 0.496835 | 1.1:+55050991 | None:intergenic |
| GCAGTAGAAACCTTTCAAGT+AGG | 0.497113 | 1.1:+55061122 | None:intergenic |
| AGTCATTTGTCTGCAAGGTC+CGG | 0.497944 | 1.1:-55050921 | MS.gene004705:CDS |
| AGGTTGCAACAGAAAATTTG+AGG | 0.498991 | 1.1:-55057748 | MS.gene004705:CDS |
| AACAGAAAATTTGAGGGCAC+TGG | 0.500332 | 1.1:-55057741 | MS.gene004705:CDS |
| AGCAAGGGAGAAGGCTCAAA+AGG | 0.502078 | 1.1:-55058127 | MS.gene004705:intron |
| CGAAGAAGAACAGCAGAGCC+TGG | 0.503610 | 1.1:-55050882 | MS.gene004705:CDS |
| AGTGAGGAAAACTTCTGGCC+AGG | 0.505041 | 1.1:+55055898 | None:intergenic |
| GCCTATGATTGAACGAGCAA+GGG | 0.506421 | 1.1:-55058142 | MS.gene004705:CDS |
| CAACACCTCTGTGCCGTCAT+CGG | 0.508265 | 1.1:-55062485 | MS.gene004705:CDS |
| GATCATGGAAGAAGTCGAAA+TGG | 0.508740 | 1.1:-55062594 | None:intergenic |
| GAAGAACAGCAGAGCCTGGT+AGG | 0.508883 | 1.1:-55050878 | MS.gene004705:CDS |
| AAATGATGATGATGGAACTA+AGG | 0.509116 | 1.1:-55061080 | MS.gene004705:CDS |
| AAACGATGGTGATGGAACTA+AGG | 0.509658 | 1.1:-55061047 | MS.gene004705:CDS |
| CCTTTACTTATTAAAATCAA+AGG | 0.510837 | 1.1:-55056039 | MS.gene004705:intron |
| ATGCATATTGGCCACTTGAT+CGG | 0.511215 | 1.1:-55050773 | MS.gene004705:CDS |
| GGGAGTGGATCAGATAACTT+TGG | 0.513350 | 1.1:-55060471 | MS.gene004705:CDS |
| ATCCCTGGACCGCATCGCAC+AGG | 0.513406 | 1.1:-55062390 | MS.gene004705:CDS |
| CAAATGATAAGGATTATAGT+AGG | 0.514770 | 1.1:-55057814 | MS.gene004705:CDS |
| GAAGGATAGTTACAAAATGA+AGG | 0.516245 | 1.1:+55057968 | None:intergenic |
| TGCCTATGATTGAACGAGCA+AGG | 0.516549 | 1.1:-55058143 | MS.gene004705:CDS |
| TTAGATCTGAGAATCTCAAA+AGG | 0.517424 | 1.1:-55051070 | MS.gene004705:CDS |
| TCTCCTCGTCTACAAGTGCA+TGG | 0.518772 | 1.1:+55054967 | None:intergenic |
| AAGTTTGATTAAACAGGGAG+TGG | 0.520498 | 1.1:-55060486 | MS.gene004705:CDS |
| CTGAAATCTACAAAAGATGA+TGG | 0.520706 | 1.1:-55057674 | MS.gene004705:CDS |
| TCTGCAAGGTCCGGAACTAA+AGG | 0.523343 | 1.1:-55050912 | MS.gene004705:CDS |
| AAAGAACTCAAAAGAAAGGC+AGG | 0.523354 | 1.1:-55050620 | MS.gene004705:CDS |
| TCAAGTGGCCAATATGCATA+AGG | 0.523498 | 1.1:+55050777 | None:intergenic |
| CTTGCCGCAGCCCGTTGCTG+TGG | 0.524543 | 1.1:+55050732 | None:intergenic |
| TGGTGGAGATATTAAGAGGA+AGG | 0.524645 | 1.1:-55050811 | MS.gene004705:CDS |
| GAGCAGACCTTACTTTCTGC+CGG | 0.528773 | 1.1:+55051093 | None:intergenic |
| CGTCATCGGTGCAATGTCAC+AGG | 0.529646 | 1.1:-55062471 | MS.gene004705:CDS |
| GATTCGTCAGATAAGTGCTC+AGG | 0.531397 | 1.1:+55051143 | None:intergenic |
| GCAAATGCAAATGATGATGA+TGG | 0.531564 | 1.1:-55061088 | MS.gene004705:CDS |
| AGTGCGTCGATGAGGTGGAT+AGG | 0.531807 | 1.1:+55062356 | None:intergenic |
| GGAATGCTTATCACGAAGTG+TGG | 0.532099 | 1.1:-55054219 | MS.gene004705:CDS |
| CTGTGACATTGCACCGATGA+CGG | 0.533423 | 1.1:+55062472 | None:intergenic |
| ATGATAAGTGCAACAGTCAA+AGG | 0.535437 | 1.1:-55054718 | MS.gene004705:CDS |
| GCTTATCACGAAGTGTGGAT+TGG | 0.537402 | 1.1:-55054214 | MS.gene004705:CDS |
| ACCTAATTTGTGAAACATAG+AGG | 0.539487 | 1.1:+55060337 | None:intergenic |
| ATATCTTTCGCATCTAATCC+AGG | 0.541115 | 1.1:+55056561 | None:intergenic |
| CAGGTATTCTGCATCACTAC+CGG | 0.542320 | 1.1:+55051520 | None:intergenic |
| TGTTGGTGTCATGCAGAAGA+AGG | 0.543631 | 1.1:-55056403 | MS.gene004705:CDS |
| TTTGATCATCCGTGAGGAAG+GGG | 0.546352 | 1.1:-55051000 | MS.gene004705:CDS |
| TTCCTGTGCGATGCGGTCCA+GGG | 0.546885 | 1.1:+55062388 | None:intergenic |
| GCATCATAGTCTGAATCAGC+TGG | 0.547628 | 1.1:+55050960 | None:intergenic |
| TATTAGCATCTGCAAGTGAA+GGG | 0.550929 | 1.1:-55061153 | MS.gene004705:CDS |
| TGAGTCGTCGGCCACAGCAA+CGG | 0.551417 | 1.1:-55050743 | MS.gene004705:CDS |
| AGATAACTTTGGATGAATCA+AGG | 0.554149 | 1.1:-55060460 | MS.gene004705:CDS |
| GAATATGCTAGCAGAAAAGC+TGG | 0.555725 | 1.1:-55050831 | MS.gene004705:CDS |
| TGACGGCACAGAGGTGTTGG+TGG | 0.556509 | 1.1:+55062489 | None:intergenic |
| TTTCAAAAGCAACTACATCC+AGG | 0.559469 | 1.1:-55052059 | MS.gene004705:intron |
| CTGATAGTCATTTGTCTGCA+AGG | 0.559535 | 1.1:-55050926 | MS.gene004705:CDS |
| TCAACAAACCTTGTGTATGT+TGG | 0.563253 | 1.1:+55054146 | None:intergenic |
| CTATTAGCATCTGCAAGTGA+AGG | 0.563306 | 1.1:-55061154 | MS.gene004705:CDS |
| GGTTGCAACAGAAAATTTGA+GGG | 0.564627 | 1.1:-55057747 | MS.gene004705:CDS |
| TCTTACTGATTCAAGACCGA+AGG | 0.565448 | 1.1:-55062114 | MS.gene004705:intron |
| GGCTGCGGCAAGAAAAGGTA+TGG | 0.566352 | 1.1:-55050721 | MS.gene004705:CDS |
| CGATGACGGCACAGAGGTGT+TGG | 0.566754 | 1.1:+55062486 | None:intergenic |
| GTCAGACGATGATGAGGTGG+AGG | 0.568488 | 1.1:-55051039 | MS.gene004705:CDS |
| GTGCTAAATCTGAAGAAACT+AGG | 0.569984 | 1.1:-55052089 | MS.gene004705:CDS |
| GAAAGGTTTCTACTGCTGGC+CGG | 0.570102 | 1.1:-55061115 | MS.gene004705:CDS |
| CTTATTTAAGAAGAAAATGT+CGG | 0.570985 | 1.1:-55056868 | MS.gene004705:CDS |
| TATGGCGTTTGGCAGAAGAA+TGG | 0.572032 | 1.1:+55056126 | None:intergenic |
| GTTTCATATGCTCTTCAGGT+AGG | 0.573522 | 1.1:+55054175 | None:intergenic |
| TTAAAAGTGCGTCGATGAGG+TGG | 0.574607 | 1.1:+55062351 | None:intergenic |
| AGAATCTCAAAAGGAAGTCA+AGG | 0.575312 | 1.1:-55051061 | MS.gene004705:CDS |
| TTTGGCATCTGAACATGAAG+AGG | 0.575489 | 1.1:-55060564 | MS.gene004705:CDS |
| CTGATTCAGACTATGATGCT+AGG | 0.575801 | 1.1:-55050956 | MS.gene004705:CDS |
| CCTAGTCACAAGGCGCATAA+CGG | 0.576731 | 1.1:-55060906 | MS.gene004705:CDS |
| TCAACTGAGATTTCTGGAGA+TGG | 0.578863 | 1.1:-55060788 | MS.gene004705:CDS |
| GTGGCGCAGAAGTATGCGAC+AGG | 0.579576 | 1.1:+55062419 | None:intergenic |
| CAGCATAGTGATAATCAAGT+AGG | 0.580924 | 1.1:+55060390 | None:intergenic |
| CACCTCAAGTAGTGCTTCGG+GGG | 0.582090 | 1.1:+55060841 | None:intergenic |
| AGATCAAGGAACGGAAAGAG+AGG | 0.582196 | 1.1:-55052119 | MS.gene004705:CDS |
| TAAGCCCTACCAGCCCTACC+AGG | 0.584920 | 1.1:+55050864 | None:intergenic |
| AACTCTCCTTACTTTATGAG+AGG | 0.585087 | 1.1:-55059143 | MS.gene004705:CDS |
| GCAAATGAAAACGATGGTGA+TGG | 0.585140 | 1.1:-55061055 | MS.gene004705:CDS |
| CTTCTCCTTCAACACAGCAA+CGG | 0.586763 | 1.1:+55062298 | None:intergenic |
| GGAGAAGAGAGAGTTTCTAT+CGG | 0.587647 | 1.1:-55062282 | MS.gene004705:CDS |
| GTAGCCAAATCACAAGCAGA+AGG | 0.588275 | 1.1:-55054467 | MS.gene004705:CDS |
| ACAGGATGAGTCGATGGCGA+TGG | 0.588672 | 1.1:-55055921 | MS.gene004705:intron |
| AAGAACAGCAGAGCCTGGTA+GGG | 0.589719 | 1.1:-55050877 | MS.gene004705:CDS |
| AACGATGGTGATGGAACTAA+GGG | 0.589905 | 1.1:-55061046 | MS.gene004705:CDS |
| CATGCTCTTGAGTGCCTCTG+TGG | 0.592318 | 1.1:+55060529 | None:intergenic |
| GTTTGATCATCCGTGAGGAA+GGG | 0.592610 | 1.1:-55051001 | MS.gene004705:CDS |
| TCCAGCAGGACAAATGTGGA+TGG | 0.593882 | 1.1:+55054637 | None:intergenic |
| GATTGAACGAGCAAGGGAGA+AGG | 0.598453 | 1.1:-55058136 | MS.gene004705:CDS |
| TCCAGAAATCTCAGTTGATG+AGG | 0.599100 | 1.1:+55060793 | None:intergenic |
| CTTGTAGACGAGGAGAGAGG+TGG | 0.601164 | 1.1:-55054960 | MS.gene004705:CDS |
| CTCCTCGTCTACAAGTGCAT+GGG | 0.601413 | 1.1:+55054968 | None:intergenic |
| AAGGATTGCAAATGCATCTG+AGG | 0.602595 | 1.1:-55054448 | MS.gene004705:CDS |
| TGCGTCGATGAGGTGGATAG+GGG | 0.603129 | 1.1:+55062358 | None:intergenic |
| GTCACAAGGCGCATAACGGA+TGG | 0.603827 | 1.1:-55060902 | MS.gene004705:CDS |
| GCGGTCCAGGGATGAGCATG+TGG | 0.606307 | 1.1:+55062400 | None:intergenic |
| ATCGGAAAATGATGAGTCGT+CGG | 0.608141 | 1.1:-55050755 | MS.gene004705:CDS |
| TTGTTAAAAGTGCGTCGATG+AGG | 0.611791 | 1.1:+55062348 | None:intergenic |
| TTGTAGACGAGGAGAGAGGT+GGG | 0.612466 | 1.1:-55054959 | MS.gene004705:CDS |
| GATGAAAGTTTGATTAAACA+GGG | 0.613341 | 1.1:-55060491 | MS.gene004705:CDS |
| CACTGCTGATTTGAGATGCG+TGG | 0.613580 | 1.1:+55051463 | None:intergenic |
| TGGTAGGGCTTACACTGGGA+AGG | 0.613888 | 1.1:-55050853 | MS.gene004705:CDS |
| GAGGTGTTGGTGGTTTGCGG+CGG | 0.616455 | 1.1:+55062499 | None:intergenic |
| CTGCCGACAGGATGAGTCGA+TGG | 0.616653 | 1.1:-55055927 | MS.gene004705:intron |
| AGGGCTGGTAGGGCTTACAC+TGG | 0.618442 | 1.1:-55050858 | MS.gene004705:CDS |
| ATGCGACAGGTGAAGAAGAG+AGG | 0.618702 | 1.1:+55062432 | None:intergenic |
| TGGGTCAACCCCTAGTCACA+AGG | 0.620843 | 1.1:-55060916 | MS.gene004705:CDS |
| GTCAAGGTCAGACGATGATG+AGG | 0.621447 | 1.1:-55051045 | MS.gene004705:CDS |
| GTTATGCGCCTTGTGACTAG+GGG | 0.624081 | 1.1:+55060908 | None:intergenic |
| CATGGAAGAAGTCGAAATGG+AGG | 0.624158 | 1.1:-55062591 | MS.gene004705:CDS |
| AGTGTCTTTAATGATCTCAA+AGG | 0.624487 | 1.1:-55060680 | MS.gene004705:intron |
| AGGTTTCTACTGCTGGCCGG+TGG | 0.625023 | 1.1:-55061112 | MS.gene004705:CDS |
| ACACCACTCTCCAAACTCGA+TGG | 0.628441 | 1.1:+55062233 | None:intergenic |
| TTTCTTCAGATTTAGCACCT+CGG | 0.638177 | 1.1:+55052094 | None:intergenic |
| GAAAGTTTATCAAGACATTG+CGG | 0.639694 | 1.1:+55061188 | None:intergenic |
| GGGCTGGTAGGGCTTACACT+GGG | 0.640050 | 1.1:-55050857 | MS.gene004705:CDS |
| AAGAAAAGGTATGGCAACTG+TGG | 0.640183 | 1.1:-55050712 | MS.gene004705:CDS |
| AAGGTCAGACGATGATGAGG+TGG | 0.640595 | 1.1:-55051042 | MS.gene004705:CDS |
| TCTCTGTCTTAACCCAACAT+CGG | 0.642234 | 1.1:-55060870 | MS.gene004705:CDS |
| TGCCCATGCACTTGTAGACG+AGG | 0.643766 | 1.1:-55054970 | MS.gene004705:CDS |
| AATGATGATGATGGAACTAA+GGG | 0.647447 | 1.1:-55061079 | MS.gene004705:CDS |
| ATTAGCATCTGCAAGTGAAG+GGG | 0.649135 | 1.1:-55061152 | MS.gene004705:CDS |
| GAGGTGGAGGTAGATTCTGA+AGG | 0.649844 | 1.1:-55051026 | MS.gene004705:CDS |
| TGCCGGTCAAGCAAATCAAG+TGG | 0.651293 | 1.1:+55051110 | None:intergenic |
| TTGAGATCATTAAAGACACT+AGG | 0.652067 | 1.1:+55060683 | None:intergenic |
| ATGCCTCTGACTTCAAGACA+TGG | 0.654569 | 1.1:+55056075 | None:intergenic |
| TTGTAAAACAGATCAAGGAA+CGG | 0.654616 | 1.1:-55052128 | MS.gene004705:intron |
| ACACCTCAAGTAGTGCTTCG+GGG | 0.654699 | 1.1:+55060840 | None:intergenic |
| GATAATACTGGCTCTAAAGG+AGG | 0.656500 | 1.1:-55055873 | MS.gene004705:intron |
| TTGCAACAAGAGCTGACCCA+AGG | 0.656828 | 1.1:+55058304 | None:intergenic |
| GCGTCGATGAGGTGGATAGG+GGG | 0.663260 | 1.1:+55062359 | None:intergenic |
| ACTTCTGTCCAACATACACA+AGG | 0.667461 | 1.1:-55054154 | MS.gene004705:intron |
| GATTAGGTTCCTGTGCGATG+CGG | 0.673853 | 1.1:+55062381 | None:intergenic |
| GAACGGAAAGAGAGGAACCG+AGG | 0.676661 | 1.1:-55052111 | MS.gene004705:CDS |
| GCACTTGTAGACGAGGAGAG+AGG | 0.679073 | 1.1:-55054963 | MS.gene004705:CDS |
| TTGTGAGCTAAGGTTGCTCG+CGG | 0.682338 | 1.1:-55054763 | MS.gene004705:intron |
| TATGCTAGCAGAAAAGCTGG+TGG | 0.683312 | 1.1:-55050828 | MS.gene004705:CDS |
| AGTCCATGTCTTGAAGTCAG+AGG | 0.684722 | 1.1:-55056078 | MS.gene004705:CDS |
| TTGCCATCGAGTTTGGAGAG+TGG | 0.688858 | 1.1:-55062236 | MS.gene004705:CDS |
| GGCCATACTTGCAGCCACAG+AGG | 0.690135 | 1.1:-55060543 | MS.gene004705:CDS |
| AAAGAACAAAGAGATTACCA+AGG | 0.692817 | 1.1:-55054611 | MS.gene004705:intron |
| AGTGATGCAGAATACCTGAA+CGG | 0.696328 | 1.1:-55051515 | MS.gene004705:CDS |
| AAATCTACAAAAGATGATGG+TGG | 0.698268 | 1.1:-55057671 | MS.gene004705:CDS |
| AAGGGAGCAAATGAAAACGA+TGG | 0.708803 | 1.1:-55061061 | MS.gene004705:CDS |
| GAGCCAGTATTATCTCAGTG+AGG | 0.710886 | 1.1:+55055882 | None:intergenic |
| GCAAATGCATCTGAGGAGCG+TGG | 0.728048 | 1.1:-55054441 | MS.gene004705:CDS |
| CGTTTGGCAGAAGAATGGCA+AGG | 0.732352 | 1.1:+55056131 | None:intergenic |
| TTGCACCGATGACGGCACAG+AGG | 0.748299 | 1.1:+55062480 | None:intergenic |
| AGGACGTTTGATCATCCGTG+AGG | 0.749026 | 1.1:-55051006 | MS.gene004705:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 55050602 | 55062612 | 55050602 | ID=MS.gene004705 |
| chr1.1 | mRNA | 55050602 | 55062612 | 55050602 | ID=MS.gene004705.t1;Parent=MS.gene004705 |
| chr1.1 | exon | 55062115 | 55062612 | 55062115 | ID=MS.gene004705.t1.exon1;Parent=MS.gene004705.t1 |
| chr1.1 | CDS | 55062115 | 55062612 | 55062115 | ID=cds.MS.gene004705.t1;Parent=MS.gene004705.t1 |
| chr1.1 | exon | 55060681 | 55061236 | 55060681 | ID=MS.gene004705.t1.exon2;Parent=MS.gene004705.t1 |
| chr1.1 | CDS | 55060681 | 55061236 | 55060681 | ID=cds.MS.gene004705.t1;Parent=MS.gene004705.t1 |
| chr1.1 | exon | 55060339 | 55060590 | 55060339 | ID=MS.gene004705.t1.exon3;Parent=MS.gene004705.t1 |
| chr1.1 | CDS | 55060339 | 55060590 | 55060339 | ID=cds.MS.gene004705.t1;Parent=MS.gene004705.t1 |
| chr1.1 | exon | 55059079 | 55059170 | 55059079 | ID=MS.gene004705.t1.exon4;Parent=MS.gene004705.t1 |
| chr1.1 | CDS | 55059079 | 55059170 | 55059079 | ID=cds.MS.gene004705.t1;Parent=MS.gene004705.t1 |
| chr1.1 | exon | 55058128 | 55058337 | 55058128 | ID=MS.gene004705.t1.exon5;Parent=MS.gene004705.t1 |
| chr1.1 | CDS | 55058128 | 55058337 | 55058128 | ID=cds.MS.gene004705.t1;Parent=MS.gene004705.t1 |
| chr1.1 | exon | 55057661 | 55058050 | 55057661 | ID=MS.gene004705.t1.exon6;Parent=MS.gene004705.t1 |
| chr1.1 | CDS | 55057661 | 55058050 | 55057661 | ID=cds.MS.gene004705.t1;Parent=MS.gene004705.t1 |
| chr1.1 | exon | 55056771 | 55056940 | 55056771 | ID=MS.gene004705.t1.exon7;Parent=MS.gene004705.t1 |
| chr1.1 | CDS | 55056771 | 55056940 | 55056771 | ID=cds.MS.gene004705.t1;Parent=MS.gene004705.t1 |
| chr1.1 | exon | 55056524 | 55056617 | 55056524 | ID=MS.gene004705.t1.exon8;Parent=MS.gene004705.t1 |
| chr1.1 | CDS | 55056524 | 55056617 | 55056524 | ID=cds.MS.gene004705.t1;Parent=MS.gene004705.t1 |
| chr1.1 | exon | 55056374 | 55056427 | 55056374 | ID=MS.gene004705.t1.exon9;Parent=MS.gene004705.t1 |
| chr1.1 | CDS | 55056374 | 55056427 | 55056374 | ID=cds.MS.gene004705.t1;Parent=MS.gene004705.t1 |
| chr1.1 | exon | 55056040 | 55056216 | 55056040 | ID=MS.gene004705.t1.exon10;Parent=MS.gene004705.t1 |
| chr1.1 | CDS | 55056040 | 55056216 | 55056040 | ID=cds.MS.gene004705.t1;Parent=MS.gene004705.t1 |
| chr1.1 | exon | 55055874 | 55055939 | 55055874 | ID=MS.gene004705.t1.exon11;Parent=MS.gene004705.t1 |
| chr1.1 | CDS | 55055874 | 55055939 | 55055874 | ID=cds.MS.gene004705.t1;Parent=MS.gene004705.t1 |
| chr1.1 | exon | 55054926 | 55055039 | 55054926 | ID=MS.gene004705.t1.exon12;Parent=MS.gene004705.t1 |
| chr1.1 | CDS | 55054926 | 55055039 | 55054926 | ID=cds.MS.gene004705.t1;Parent=MS.gene004705.t1 |
| chr1.1 | exon | 55054612 | 55054773 | 55054612 | ID=MS.gene004705.t1.exon13;Parent=MS.gene004705.t1 |
| chr1.1 | CDS | 55054612 | 55054773 | 55054612 | ID=cds.MS.gene004705.t1;Parent=MS.gene004705.t1 |
| chr1.1 | exon | 55054388 | 55054516 | 55054388 | ID=MS.gene004705.t1.exon14;Parent=MS.gene004705.t1 |
| chr1.1 | CDS | 55054388 | 55054516 | 55054388 | ID=cds.MS.gene004705.t1;Parent=MS.gene004705.t1 |
| chr1.1 | exon | 55054155 | 55054256 | 55054155 | ID=MS.gene004705.t1.exon15;Parent=MS.gene004705.t1 |
| chr1.1 | CDS | 55054155 | 55054256 | 55054155 | ID=cds.MS.gene004705.t1;Parent=MS.gene004705.t1 |
| chr1.1 | exon | 55052060 | 55052139 | 55052060 | ID=MS.gene004705.t1.exon16;Parent=MS.gene004705.t1 |
| chr1.1 | CDS | 55052060 | 55052139 | 55052060 | ID=cds.MS.gene004705.t1;Parent=MS.gene004705.t1 |
| chr1.1 | exon | 55051452 | 55051595 | 55051452 | ID=MS.gene004705.t1.exon17;Parent=MS.gene004705.t1 |
| chr1.1 | CDS | 55051452 | 55051595 | 55051452 | ID=cds.MS.gene004705.t1;Parent=MS.gene004705.t1 |
| chr1.1 | exon | 55050602 | 55051193 | 55050602 | ID=MS.gene004705.t1.exon18;Parent=MS.gene004705.t1 |
| chr1.1 | CDS | 55050602 | 55051193 | 55050602 | ID=cds.MS.gene004705.t1;Parent=MS.gene004705.t1 |
| Gene Sequence |
| Protein sequence |
