Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32092.t1 | XP_003590720.2 | 92.6 | 1292 | 92 | 2 | 1 | 1289 | 1 | 1292 | 0.00E+00 | 2222.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32092.t1 | Q5ZKD5 | 24.8 | 1296 | 796 | 33 | 5 | 1245 | 91 | 1263 | 6.2e-71 | 271.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32092.t1 | G7I2N3 | 92.6 | 1292 | 92 | 2 | 1 | 1289 | 1 | 1292 | 0.0e+00 | 2222.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049824 | MS.gene32092 | 0.802831 | 4.66E-49 | -1.69E-46 |
| MS.gene055808 | MS.gene32092 | 0.805122 | 1.55E-49 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32092.t1 | MTR_1g072970 | 94.505 | 1292 | 68 | 2 | 1 | 1289 | 1 | 1292 | 0.0 | 2481 |
| MS.gene32092.t1 | MTR_1g072890 | 86.164 | 1301 | 154 | 6 | 1 | 1288 | 1 | 1288 | 0.0 | 2248 |
| MS.gene32092.t1 | MTR_1g072890 | 84.913 | 1034 | 132 | 5 | 1 | 1023 | 1 | 1021 | 0.0 | 1754 |
| MS.gene32092.t1 | MTR_1g053255 | 28.743 | 1082 | 715 | 23 | 7 | 1066 | 3 | 1050 | 3.00e-104 | 358 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32092.t1 | AT2G34357 | 51.442 | 1283 | 573 | 20 | 16 | 1285 | 24 | 1269 | 0.0 | 1178 |
| MS.gene32092.t1 | AT4G23540 | 28.441 | 1097 | 700 | 26 | 5 | 1061 | 10 | 1061 | 4.03e-109 | 371 |
Find 257 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCAGCTTCCAAATTTAA+TGG | 0.155327 | 1.2:+55721104 | None:intergenic |
| ATCCCTTATACCATTAAATT+TGG | 0.179078 | 1.2:-55721114 | MS.gene32092:CDS |
| CTTCCAAATTTAATGGTATA+AGG | 0.189743 | 1.2:+55721111 | None:intergenic |
| ACCTCATCAACTGAGATTTC+TGG | 0.202537 | 1.2:-55723605 | MS.gene32092:CDS |
| CTGCTGTTCTTCTTCGCTTC+TGG | 0.206041 | 1.2:+55713736 | None:intergenic |
| TGAGGTTCTGCTTGGGCTTA+TGG | 0.208576 | 1.2:-55719017 | MS.gene32092:CDS |
| CAGATCTTTCAACAAATTAT+TGG | 0.220117 | 1.2:+55720560 | None:intergenic |
| ATTTATCCGTCTCAAATAAA+TGG | 0.226752 | 1.2:-55721082 | MS.gene32092:CDS |
| TCCTCTATGTTTCACAAATT+AGG | 0.227959 | 1.2:-55723149 | MS.gene32092:intron |
| CATATTATTCCACGAATATT+AGG | 0.238036 | 1.2:+55720735 | None:intergenic |
| TTTCACATTTGTTGATTCAT+AGG | 0.241660 | 1.2:-55725003 | MS.gene32092:CDS |
| GGCCAATCTTGGTTTATTAA+AGG | 0.244569 | 1.2:-55717347 | MS.gene32092:CDS |
| TTCTCCCTGCAGGCCAATCT+TGG | 0.277069 | 1.2:-55717358 | MS.gene32092:intron |
| ATTATACAAGACTTGTTCTT+TGG | 0.291284 | 1.2:+55720632 | None:intergenic |
| CAATCCTTCTGCTTGTGATT+TGG | 0.298079 | 1.2:+55717315 | None:intergenic |
| TGCCTCTGTGGCTGCAAGTA+TGG | 0.299117 | 1.2:+55723352 | None:intergenic |
| AGTAATAAAGCCAGCATTGC+AGG | 0.304957 | 1.2:-55719375 | MS.gene32092:intron |
| TCGCTTCTGGCCTTTAGTTC+CGG | 0.307234 | 1.2:+55713749 | None:intergenic |
| ACACACTTGTTTACTCTTTG+TGG | 0.311562 | 1.2:-55720851 | MS.gene32092:CDS |
| TGATGAAAGTTTGATTAAAC+AGG | 0.311799 | 1.2:-55723303 | MS.gene32092:CDS |
| ATTATCACTATGCTGCTTCT+TGG | 0.316544 | 1.2:-55723193 | MS.gene32092:CDS |
| AAATCAGCAGTGTCTTCATT+TGG | 0.329028 | 1.2:-55714299 | MS.gene32092:CDS |
| AGCTTGAACCTTATGCATAT+TGG | 0.332365 | 1.2:-55713632 | MS.gene32092:CDS |
| TCGGAGAGTGGTGTTGTTCA+TGG | 0.339075 | 1.2:-55725037 | MS.gene32092:CDS |
| TCCCTTGCTCGTTCAATCAT+AGG | 0.347157 | 1.2:+55720993 | None:intergenic |
| AACCTTTAATAAACCAAGAT+TGG | 0.349531 | 1.2:+55717345 | None:intergenic |
| GTTCCTGTGCGATGCGGTCC+AGG | 0.354576 | 1.2:+55725200 | None:intergenic |
| AAGGTTGCTCGCGGCCTTGT+TGG | 0.356041 | 1.2:-55717606 | MS.gene32092:CDS |
| TAGACAAAACAAGAACATTC+AGG | 0.356460 | 1.2:-55720691 | MS.gene32092:CDS |
| AATAAAGGCAATCAAGTCTA+TGG | 0.356481 | 1.2:+55718960 | None:intergenic |
| CTGTGGTAAATATGACAAAA+AGG | 0.357847 | 1.2:-55713542 | MS.gene32092:CDS |
| TTCTGAATCGTCTACTTTGT+TGG | 0.358506 | 1.2:+55719672 | None:intergenic |
| GATTGTTATCGTTAAAGTTC+CGG | 0.360458 | 1.2:-55725131 | MS.gene32092:CDS |
| AGGTTGCTCGCGGCCTTGTT+GGG | 0.364178 | 1.2:-55717605 | MS.gene32092:CDS |
| TCCATCCACATTTGTCCTGC+TGG | 0.368547 | 1.2:-55717490 | MS.gene32092:CDS |
| GAACAGGGCTTATGAAATTC+TGG | 0.371930 | 1.2:-55717852 | MS.gene32092:CDS |
| CCGTTATGCGCCTTGTGACT+AGG | 0.376054 | 1.2:+55723717 | None:intergenic |
| CATGGACTATCAAGTAATAA+AGG | 0.376758 | 1.2:+55718945 | None:intergenic |
| GTGTTGGTGGTTTGCGGCGG+TGG | 0.378305 | 1.2:+55725315 | None:intergenic |
| TTCCAAATTTAATGGTATAA+GGG | 0.379913 | 1.2:+55721112 | None:intergenic |
| CAAGAATATACAAAACTTGT+TGG | 0.382877 | 1.2:+55723831 | None:intergenic |
| TTCTCCTTCAACACAGCAAC+CGG | 0.387031 | 1.2:+55725112 | None:intergenic |
| ATTCTAAAACAGTATATTGT+TGG | 0.389703 | 1.2:-55721050 | MS.gene32092:CDS |
| AACACCTCAAGTAGTGCTTC+GGG | 0.393913 | 1.2:+55723650 | None:intergenic |
| GGGTCAGCTCTTGTTGCAAT+GGG | 0.394671 | 1.2:-55721152 | MS.gene32092:CDS |
| CTTGCAGACAAATGACTATC+AGG | 0.396859 | 1.2:+55713774 | None:intergenic |
| AATCAGCAGTGTCTTCATTT+GGG | 0.400201 | 1.2:-55714298 | MS.gene32092:intron |
| ATCATTTGCATTTGCTCCAC+CGG | 0.400256 | 1.2:+55723907 | None:intergenic |
| GAGTCGTCGGCCACAGCAAC+GGG | 0.401771 | 1.2:-55713589 | MS.gene32092:CDS |
| CATTCAGGATTCAAATGATA+AGG | 0.406494 | 1.2:-55720676 | MS.gene32092:CDS |
| TTTCCTCACTGAGATAATAC+TGG | 0.407293 | 1.2:-55718737 | MS.gene32092:CDS |
| CGAAGCTTGAGGTTCTGCTT+GGG | 0.409869 | 1.2:-55719024 | MS.gene32092:CDS |
| TTATCACTATGCTGCTTCTT+GGG | 0.410599 | 1.2:-55723192 | MS.gene32092:CDS |
| CGTTATGCGCCTTGTGACTA+GGG | 0.411687 | 1.2:+55723718 | None:intergenic |
| AATTTCATAAGCCCTGTTCC+TGG | 0.412637 | 1.2:+55717856 | None:intergenic |
| TGCAGCTTCATGCGTGCCTT+GGG | 0.415736 | 1.2:-55721172 | MS.gene32092:intron |
| TTCGCAGCTTCATTGTTGCC+TGG | 0.416944 | 1.2:-55719431 | MS.gene32092:CDS |
| TCGAAGCTTGAGGTTCTGCT+TGG | 0.418257 | 1.2:-55719025 | MS.gene32092:CDS |
| AGATGATGGTGGTTGTTTGC+AGG | 0.419096 | 1.2:-55720511 | MS.gene32092:intron |
| TTTGAAGTGGTTAAGAATGT+TGG | 0.419659 | 1.2:+55723763 | None:intergenic |
| ATCTCAGTGAGGAAAACTTC+TGG | 0.421709 | 1.2:+55718745 | None:intergenic |
| TGGGTCAGCTCTTGTTGCAA+TGG | 0.423842 | 1.2:-55721153 | MS.gene32092:CDS |
| ATAGTGACCTGTTTCCTAAA+GGG | 0.427478 | 1.2:+55721891 | None:intergenic |
| CTTGTATAATTACTCGCAAC+AGG | 0.428147 | 1.2:-55720619 | MS.gene32092:CDS |
| TAACACCTCAAGTAGTGCTT+CGG | 0.429890 | 1.2:+55723649 | None:intergenic |
| AGACACAGCTAAAAGTTTCA+AGG | 0.430200 | 1.2:-55720796 | MS.gene32092:CDS |
| TGTTATGTTGCCATCGAGTT+CGG | 0.431452 | 1.2:-55725056 | MS.gene32092:CDS |
| AGAAGTTTCATATGCTCTTC+AGG | 0.432031 | 1.2:+55717020 | None:intergenic |
| CTTAGACAAACCTGCAATGC+TGG | 0.433016 | 1.2:+55719365 | None:intergenic |
| CTTGAAGGCAAGAGTGTCTC+TGG | 0.435014 | 1.2:-55713519 | MS.gene32092:CDS |
| CAGAGCCTGGTAGGGCTGGT+AGG | 0.435386 | 1.2:-55713716 | MS.gene32092:CDS |
| GTGCAGCTTCATGCGTGCCT+TGG | 0.435418 | 1.2:-55721173 | MS.gene32092:intron |
| TCGGCCACAGCAACGGGCTG+CGG | 0.436473 | 1.2:-55713583 | MS.gene32092:CDS |
| AGAGCCTGGTAGGGCTGGTA+GGG | 0.440903 | 1.2:-55713715 | MS.gene32092:CDS |
| TGCTTGACCGGCAGAAAGTA+AGG | 0.447864 | 1.2:-55713947 | MS.gene32092:CDS |
| GGATTATAGTAGGCAAGATA+TGG | 0.448758 | 1.2:-55720655 | MS.gene32092:CDS |
| ATGAGGTGGATAGGTGGATT+AGG | 0.450128 | 1.2:+55725178 | None:intergenic |
| ACTGCTCGCTTGCTTGATGC+TGG | 0.451373 | 1.2:-55723566 | MS.gene32092:CDS |
| GATTATTATTTGTAGGATGT+TGG | 0.451539 | 1.2:-55719272 | MS.gene32092:intron |
| GAAAGGAAGGCATTCTTTCA+AGG | 0.451620 | 1.2:+55723805 | None:intergenic |
| ATGAGTCGATGGCGATGGCC+TGG | 0.451976 | 1.2:-55718768 | MS.gene32092:CDS |
| TGAATTGCATATATCATCGT+TGG | 0.452485 | 1.2:+55725360 | None:intergenic |
| CTGCGCCACATGCTCATCCC+TGG | 0.456440 | 1.2:-55725218 | MS.gene32092:CDS |
| TTCAGGCAGGACAGCTTTAA+CGG | 0.457383 | 1.2:+55717037 | None:intergenic |
| ACAGAGGTGTTGGTGGTTTG+CGG | 0.458316 | 1.2:+55725309 | None:intergenic |
| GCAATCAAGTCTATGGCGTT+TGG | 0.458967 | 1.2:+55718967 | None:intergenic |
| TGAGATAATACTGGCTCTAA+AGG | 0.459212 | 1.2:-55718728 | MS.gene32092:CDS |
| AAAGAAGAACCTAATATTCG+TGG | 0.460647 | 1.2:-55720744 | MS.gene32092:CDS |
| AAGCTGGTGGAGATATTAAG+AGG | 0.462330 | 1.2:-55713662 | MS.gene32092:CDS |
| AGTCAAAGGTTTAGCTCGCT+TGG | 0.462774 | 1.2:-55717556 | MS.gene32092:CDS |
| ACTGATTGAGACACGTCGTT+TGG | 0.465134 | 1.2:+55719628 | None:intergenic |
| TTCACATTTGTTGATTCATA+GGG | 0.466227 | 1.2:-55725002 | MS.gene32092:CDS |
| CAACGGGCTGCGGCAAGAAA+AGG | 0.470152 | 1.2:-55713573 | MS.gene32092:CDS |
| ACAGCAGAGCCTGGTAGGGC+TGG | 0.471151 | 1.2:-55713720 | MS.gene32092:CDS |
| AGTTCCGGTTGCTGTGTTGA+AGG | 0.474237 | 1.2:-55725116 | MS.gene32092:CDS |
| TTCATAGGGATAGTGTTCAT+TGG | 0.476869 | 1.2:-55724988 | MS.gene32092:CDS |
| ACTGTTGCACTTATCATATG+TGG | 0.478961 | 1.2:+55717576 | None:intergenic |
| AGTATACCTCTCATAAAGTA+AGG | 0.479237 | 1.2:+55721957 | None:intergenic |
| AAGAATATACAAAACTTGTT+GGG | 0.480754 | 1.2:+55723832 | None:intergenic |
| CTTCATTTACAGGGTACAAT+CGG | 0.483174 | 1.2:-55719781 | MS.gene32092:intron |
| GCAAAGTAGACGGAACCATA+TGG | 0.487129 | 1.2:-55714420 | MS.gene32092:CDS |
| ACTTGAAAGGTTTCTACTGC+TGG | 0.487430 | 1.2:-55723930 | MS.gene32092:CDS |
| AGCCACTTGATTTGCTTGAC+CGG | 0.490414 | 1.2:-55713959 | MS.gene32092:CDS |
| TGGTTGAGTGTTTGTTTAAG+TGG | 0.490627 | 1.2:-55717273 | MS.gene32092:CDS |
| GATAGTGACCTGTTTCCTAA+AGG | 0.491830 | 1.2:+55721890 | None:intergenic |
| TTGGATGAATCAAGGATGTC+AGG | 0.493009 | 1.2:-55723263 | MS.gene32092:CDS |
| GTTTCATATGCTCTTCAGGC+AGG | 0.494298 | 1.2:+55717024 | None:intergenic |
| TTCTCTTCCAACAGGTAAGA+AGG | 0.494757 | 1.2:-55724039 | MS.gene32092:intron |
| CGTTTGATCATCCGTGAGGA+AGG | 0.495561 | 1.2:-55713849 | MS.gene32092:CDS |
| TCGTTTGTTCCCCTTCCTCA+CGG | 0.496835 | 1.2:+55713838 | None:intergenic |
| GCAGTAGAAACCTTTCAAGT+AGG | 0.497113 | 1.2:+55723933 | None:intergenic |
| AGTCATTTGTCTGCAAGGTC+CGG | 0.497944 | 1.2:-55713768 | MS.gene32092:CDS |
| AGGTTGCAACAGAAAATTTG+AGG | 0.498991 | 1.2:-55720599 | MS.gene32092:CDS |
| AACAGAAAATTTGAGGGCAC+TGG | 0.500332 | 1.2:-55720592 | MS.gene32092:CDS |
| AGCAAGGGAGAAGGCTCAAA+AGG | 0.502078 | 1.2:-55720979 | MS.gene32092:intron |
| CGAAGAAGAACAGCAGAGCC+TGG | 0.503610 | 1.2:-55713729 | MS.gene32092:CDS |
| AGTGAGGAAAACTTCTGGCC+AGG | 0.505041 | 1.2:+55718750 | None:intergenic |
| ACGTGTCTCAATCAGTTCTC+AGG | 0.505884 | 1.2:-55719621 | MS.gene32092:intron |
| TCCTATGATTGAACGAGCAA+GGG | 0.508160 | 1.2:-55720994 | MS.gene32092:CDS |
| CAACACCTCTGTGCCGTCAT+CGG | 0.508265 | 1.2:-55725298 | MS.gene32092:CDS |
| TTCCTATGATTGAACGAGCA+AGG | 0.508357 | 1.2:-55720995 | MS.gene32092:CDS |
| GAAGAACAGCAGAGCCTGGT+AGG | 0.508883 | 1.2:-55713725 | MS.gene32092:CDS |
| AAATGATGATGATGGAACTA+AGG | 0.509116 | 1.2:-55723891 | MS.gene32092:CDS |
| AAACGATGGTGATGGAACTA+AGG | 0.509658 | 1.2:-55723858 | MS.gene32092:CDS |
| CCTTTACTTATTAAAATCAA+AGG | 0.510837 | 1.2:-55718891 | MS.gene32092:intron |
| ATGCATATTGGCCACTTGAT+CGG | 0.511215 | 1.2:-55713620 | MS.gene32092:CDS |
| GTGGCGCAGAAGTATGCAAC+AGG | 0.512776 | 1.2:+55725232 | None:intergenic |
| GGGAGTGGATCAGATAACTT+TGG | 0.513350 | 1.2:-55723282 | MS.gene32092:CDS |
| ATCCCTGGACCGCATCGCAC+AGG | 0.513406 | 1.2:-55725203 | MS.gene32092:CDS |
| CAAATGATAAGGATTATAGT+AGG | 0.514770 | 1.2:-55720665 | MS.gene32092:CDS |
| GAAGGATAGTTACAAAATGA+AGG | 0.516245 | 1.2:+55720819 | None:intergenic |
| TTAGATCTGAGAATCTCAAA+AGG | 0.517424 | 1.2:-55713917 | MS.gene32092:CDS |
| AAGTTTGATTAAACAGGGAG+TGG | 0.520498 | 1.2:-55723297 | MS.gene32092:CDS |
| CTGAAATCTACAAAAGATGA+TGG | 0.520706 | 1.2:-55720525 | MS.gene32092:CDS |
| TCTGCAAGGTCCGGAACTAA+AGG | 0.523343 | 1.2:-55713759 | MS.gene32092:CDS |
| TCAAGTGGCCAATATGCATA+AGG | 0.523498 | 1.2:+55713624 | None:intergenic |
| CTTGCCGCAGCCCGTTGCTG+TGG | 0.524543 | 1.2:+55713579 | None:intergenic |
| TGGTGGAGATATTAAGAGGA+AGG | 0.524645 | 1.2:-55713658 | MS.gene32092:CDS |
| GAGCAGACCTTACTTTCTGC+CGG | 0.528773 | 1.2:+55713940 | None:intergenic |
| CGTCATCGGTGCAATGTCAC+AGG | 0.529646 | 1.2:-55725284 | MS.gene32092:CDS |
| GATTCGTCAGATAAGTGCTC+AGG | 0.531397 | 1.2:+55713990 | None:intergenic |
| GCAAATGCAAATGATGATGA+TGG | 0.531564 | 1.2:-55723899 | MS.gene32092:CDS |
| GGAATGCTTATCACGAAGTG+TGG | 0.532099 | 1.2:-55717068 | MS.gene32092:CDS |
| CTGTGACATTGCACCGATGA+CGG | 0.533423 | 1.2:+55725285 | None:intergenic |
| ATGATAAGTGCAACAGTCAA+AGG | 0.535437 | 1.2:-55717570 | MS.gene32092:CDS |
| GCTTATCACGAAGTGTGGAT+TGG | 0.537402 | 1.2:-55717063 | MS.gene32092:CDS |
| ACCTAATTTGTGAAACATAG+AGG | 0.539487 | 1.2:+55723148 | None:intergenic |
| ATATCTTTCGCATCTAATCC+AGG | 0.541115 | 1.2:+55719413 | None:intergenic |
| CAGGTATTCTGCATCACTAC+CGG | 0.542320 | 1.2:+55714367 | None:intergenic |
| TGTTGGTGTCATGCAGAAGA+AGG | 0.543631 | 1.2:-55719255 | MS.gene32092:CDS |
| TTTGATCATCCGTGAGGAAG+GGG | 0.546352 | 1.2:-55713847 | MS.gene32092:CDS |
| TTCCTGTGCGATGCGGTCCA+GGG | 0.546885 | 1.2:+55725201 | None:intergenic |
| GCATCATAGTCTGAATCAGC+TGG | 0.547628 | 1.2:+55713807 | None:intergenic |
| TATTAGCATCTGCAAGTGAA+GGG | 0.550929 | 1.2:-55723964 | MS.gene32092:CDS |
| TGAGTCGTCGGCCACAGCAA+CGG | 0.551417 | 1.2:-55713590 | MS.gene32092:CDS |
| AGATAACTTTGGATGAATCA+AGG | 0.554149 | 1.2:-55723271 | MS.gene32092:CDS |
| GAATATGCTAGCAGAAAAGC+TGG | 0.555725 | 1.2:-55713678 | MS.gene32092:CDS |
| TGACGGCACAGAGGTGTTGG+TGG | 0.556509 | 1.2:+55725302 | None:intergenic |
| TCTCCTCGTCTACAAGTGCA+CGG | 0.557581 | 1.2:+55717819 | None:intergenic |
| TTTCAAAAGCAACTACATCC+AGG | 0.559469 | 1.2:-55714905 | MS.gene32092:intron |
| CTGATAGTCATTTGTCTGCA+AGG | 0.559535 | 1.2:-55713773 | MS.gene32092:CDS |
| TTGTAGACGAGGAGAGAGGT+GGG | 0.562318 | 1.2:-55717811 | MS.gene32092:CDS |
| TCAACAAACCTTGTGTATGT+TGG | 0.563253 | 1.2:+55716995 | None:intergenic |
| CTATTAGCATCTGCAAGTGA+AGG | 0.563306 | 1.2:-55723965 | MS.gene32092:CDS |
| GGTTGCAACAGAAAATTTGA+GGG | 0.564627 | 1.2:-55720598 | MS.gene32092:CDS |
| TCTTACTGATTCAAGACCGA+AGG | 0.565448 | 1.2:-55724927 | MS.gene32092:intron |
| GGCTGCGGCAAGAAAAGGTA+TGG | 0.566352 | 1.2:-55713568 | MS.gene32092:CDS |
| CGATGACGGCACAGAGGTGT+TGG | 0.566754 | 1.2:+55725299 | None:intergenic |
| GTCAGACGATGATGAGGTGG+AGG | 0.568488 | 1.2:-55713886 | MS.gene32092:CDS |
| GTGCTAAATCTGAAGAAACT+AGG | 0.569984 | 1.2:-55714935 | MS.gene32092:CDS |
| GAAAGGTTTCTACTGCTGGC+CGG | 0.570102 | 1.2:-55723926 | MS.gene32092:CDS |
| CTTATTTAAGAAGAAAATGT+CGG | 0.570985 | 1.2:-55719719 | MS.gene32092:CDS |
| TATGGCGTTTGGCAGAAGAA+TGG | 0.572032 | 1.2:+55718978 | None:intergenic |
| TTAAAAGTGCGTCGATGAGG+TGG | 0.574607 | 1.2:+55725164 | None:intergenic |
| AGAATCTCAAAAGGAAGTCA+AGG | 0.575312 | 1.2:-55713908 | MS.gene32092:CDS |
| TTTGGCATCTGAACATGAAG+AGG | 0.575489 | 1.2:-55723375 | MS.gene32092:CDS |
| CTGATTCAGACTATGATGCT+AGG | 0.575801 | 1.2:-55713803 | MS.gene32092:CDS |
| CCTAGTCACAAGGCGCATAA+CGG | 0.576731 | 1.2:-55723717 | MS.gene32092:CDS |
| TCAACTGAGATTTCTGGAGA+TGG | 0.578863 | 1.2:-55723599 | MS.gene32092:CDS |
| CAGCATAGTGATAATCAAGT+AGG | 0.580924 | 1.2:+55723201 | None:intergenic |
| CACCTCAAGTAGTGCTTCGG+GGG | 0.582090 | 1.2:+55723652 | None:intergenic |
| AGATCAAGGAACGGAAAGAG+AGG | 0.582196 | 1.2:-55714965 | MS.gene32092:CDS |
| TAAGCCCTACCAGCCCTACC+AGG | 0.584920 | 1.2:+55713711 | None:intergenic |
| AACTCTCCTTACTTTATGAG+AGG | 0.585087 | 1.2:-55721963 | MS.gene32092:CDS |
| GCAAATGAAAACGATGGTGA+TGG | 0.585140 | 1.2:-55723866 | MS.gene32092:CDS |
| GGAGAAGAGAGAGTTTCTAT+CGG | 0.587647 | 1.2:-55725095 | MS.gene32092:CDS |
| GTAGCCAAATCACAAGCAGA+AGG | 0.588275 | 1.2:-55717319 | MS.gene32092:CDS |
| ACAGGATGAGTCGATGGCGA+TGG | 0.588672 | 1.2:-55718773 | MS.gene32092:intron |
| AAGAACAGCAGAGCCTGGTA+GGG | 0.589719 | 1.2:-55713724 | MS.gene32092:CDS |
| AACGATGGTGATGGAACTAA+GGG | 0.589905 | 1.2:-55723857 | MS.gene32092:CDS |
| CTCCTCGTCTACAAGTGCAC+GGG | 0.591156 | 1.2:+55717820 | None:intergenic |
| CATGCTCTTGAGTGCCTCTG+TGG | 0.592318 | 1.2:+55723340 | None:intergenic |
| GTTTGATCATCCGTGAGGAA+GGG | 0.592610 | 1.2:-55713848 | MS.gene32092:CDS |
| TCCAGCAGGACAAATGTGGA+TGG | 0.593882 | 1.2:+55717489 | None:intergenic |
| AGTGCGTCGATGAGGTGGAT+AGG | 0.595819 | 1.2:+55725169 | None:intergenic |
| GATTGAACGAGCAAGGGAGA+AGG | 0.598453 | 1.2:-55720988 | MS.gene32092:CDS |
| TCCAGAAATCTCAGTTGATG+AGG | 0.599100 | 1.2:+55723604 | None:intergenic |
| CTTGTAGACGAGGAGAGAGG+TGG | 0.601164 | 1.2:-55717812 | MS.gene32092:CDS |
| GATCATGGAAGAAGTCGAGA+TGG | 0.601908 | 1.2:-55725407 | None:intergenic |
| AAGGATTGCAAATGCATCTG+AGG | 0.602595 | 1.2:-55717300 | MS.gene32092:CDS |
| GTCACAAGGCGCATAACGGA+TGG | 0.603827 | 1.2:-55723713 | MS.gene32092:CDS |
| CATGGAAGAAGTCGAGATGG+AGG | 0.605522 | 1.2:-55725404 | MS.gene32092:CDS |
| GCGGTCCAGGGATGAGCATG+TGG | 0.606307 | 1.2:+55725213 | None:intergenic |
| ATCGGAAAATGATGAGTCGT+CGG | 0.608141 | 1.2:-55713602 | MS.gene32092:CDS |
| TTGTTAAAAGTGCGTCGATG+AGG | 0.611791 | 1.2:+55725161 | None:intergenic |
| GATGAAAGTTTGATTAAACA+GGG | 0.613341 | 1.2:-55723302 | MS.gene32092:CDS |
| CACTGCTGATTTGAGATGCG+TGG | 0.613580 | 1.2:+55714310 | None:intergenic |
| TGGTAGGGCTTACACTGGGA+AGG | 0.613888 | 1.2:-55713700 | MS.gene32092:CDS |
| GAGGTGTTGGTGGTTTGCGG+CGG | 0.616455 | 1.2:+55725312 | None:intergenic |
| CTGCCGACAGGATGAGTCGA+TGG | 0.616653 | 1.2:-55718779 | MS.gene32092:intron |
| AGGGCTGGTAGGGCTTACAC+TGG | 0.618442 | 1.2:-55713705 | MS.gene32092:CDS |
| ATGCAACAGGTGAAGAAGAG+AGG | 0.618702 | 1.2:+55725245 | None:intergenic |
| TGGGTCAACCCCTAGTCACA+AGG | 0.620843 | 1.2:-55723727 | MS.gene32092:CDS |
| GTCAAGGTCAGACGATGATG+AGG | 0.621447 | 1.2:-55713892 | MS.gene32092:CDS |
| GTAGCAGATTGATAGAGCCA+TGG | 0.622425 | 1.2:-55713440 | MS.gene32092:CDS |
| GTTATGCGCCTTGTGACTAG+GGG | 0.624081 | 1.2:+55723719 | None:intergenic |
| GCGTCGATGAGGTGGATAGG+TGG | 0.624227 | 1.2:+55725172 | None:intergenic |
| AGTGTCTTTAATGATCTCAA+AGG | 0.624487 | 1.2:-55723491 | MS.gene32092:intron |
| AGGTTTCTACTGCTGGCCGG+TGG | 0.625023 | 1.2:-55723923 | MS.gene32092:CDS |
| CACTAAATTACAGCAAACCA+TGG | 0.627971 | 1.2:+55713423 | None:intergenic |
| ACACCACTCTCCGAACTCGA+TGG | 0.631921 | 1.2:+55725046 | None:intergenic |
| TTGCCATCGAGTTCGGAGAG+TGG | 0.635482 | 1.2:-55725049 | MS.gene32092:CDS |
| TTTCTTCAGATTTAGCACCT+CGG | 0.638177 | 1.2:+55714940 | None:intergenic |
| GAAAGTTTATCAAGACATTG+CGG | 0.639694 | 1.2:+55723999 | None:intergenic |
| GGGCTGGTAGGGCTTACACT+GGG | 0.640050 | 1.2:-55713704 | MS.gene32092:CDS |
| AAGAAAAGGTATGGCAACTG+TGG | 0.640183 | 1.2:-55713559 | MS.gene32092:CDS |
| AAGGTCAGACGATGATGAGG+TGG | 0.640595 | 1.2:-55713889 | MS.gene32092:CDS |
| TCTCTGTCTTAACCCAACAT+CGG | 0.642234 | 1.2:-55723681 | MS.gene32092:CDS |
| TGCCCGTGCACTTGTAGACG+AGG | 0.643766 | 1.2:-55717822 | MS.gene32092:CDS |
| AATGATGATGATGGAACTAA+GGG | 0.647447 | 1.2:-55723890 | MS.gene32092:CDS |
| ATTAGCATCTGCAAGTGAAG+GGG | 0.649135 | 1.2:-55723963 | MS.gene32092:CDS |
| GAGGTGGAGGTAGATTCTGA+AGG | 0.649844 | 1.2:-55713873 | MS.gene32092:CDS |
| TGCCGGTCAAGCAAATCAAG+TGG | 0.651293 | 1.2:+55713957 | None:intergenic |
| TTGAGATCATTAAAGACACT+AGG | 0.652067 | 1.2:+55723494 | None:intergenic |
| ATGCCTCTGACTTCAAGACA+TGG | 0.654569 | 1.2:+55718927 | None:intergenic |
| TTGTAAAACAGATCAAGGAA+CGG | 0.654616 | 1.2:-55714974 | MS.gene32092:intron |
| ACACCTCAAGTAGTGCTTCG+GGG | 0.654699 | 1.2:+55723651 | None:intergenic |
| GATAATACTGGCTCTAAAGG+AGG | 0.656500 | 1.2:-55718725 | MS.gene32092:intron |
| TTGCAACAAGAGCTGACCCA+AGG | 0.656828 | 1.2:+55721156 | None:intergenic |
| ACTTCTGTCCAACATACACA+AGG | 0.667461 | 1.2:-55717003 | MS.gene32092:intron |
| GAACGGAAAGAGAGGAACCG+AGG | 0.676661 | 1.2:-55714957 | MS.gene32092:CDS |
| GCACTTGTAGACGAGGAGAG+AGG | 0.679073 | 1.2:-55717815 | MS.gene32092:CDS |
| TGTAGACGAGGAGAGAGGTG+GGG | 0.680978 | 1.2:-55717810 | MS.gene32092:CDS |
| GATTAGGTTCCTGTGCGATG+CGG | 0.681268 | 1.2:+55725194 | None:intergenic |
| TTGTGAGCTAAGGTTGCTCG+CGG | 0.682338 | 1.2:-55717615 | MS.gene32092:intron |
| TATGCTAGCAGAAAAGCTGG+TGG | 0.683312 | 1.2:-55713675 | MS.gene32092:CDS |
| AGTCCATGTCTTGAAGTCAG+AGG | 0.684722 | 1.2:-55718930 | MS.gene32092:CDS |
| GGCCATACTTGCAGCCACAG+AGG | 0.690135 | 1.2:-55723354 | MS.gene32092:CDS |
| AAAGAACAAAGAGATTACCA+AGG | 0.692817 | 1.2:-55717463 | MS.gene32092:intron |
| AGTGATGCAGAATACCTGAA+CGG | 0.696328 | 1.2:-55714362 | MS.gene32092:CDS |
| AAATCTACAAAAGATGATGG+TGG | 0.698268 | 1.2:-55720522 | MS.gene32092:CDS |
| AAGGGAGCAAATGAAAACGA+TGG | 0.708803 | 1.2:-55723872 | MS.gene32092:CDS |
| GAGCCAGTATTATCTCAGTG+AGG | 0.710886 | 1.2:+55718734 | None:intergenic |
| GCAAATGCATCTGAGGAGCG+TGG | 0.728048 | 1.2:-55717293 | MS.gene32092:CDS |
| CGTTTGGCAGAAGAATGGCA+AGG | 0.732352 | 1.2:+55718983 | None:intergenic |
| TTGCACCGATGACGGCACAG+AGG | 0.748299 | 1.2:+55725293 | None:intergenic |
| AGGACGTTTGATCATCCGTG+AGG | 0.749026 | 1.2:-55713853 | MS.gene32092:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 55713425 | 55725425 | 55713425 | ID=MS.gene32092 |
| chr1.2 | mRNA | 55713425 | 55725425 | 55713425 | ID=MS.gene32092.t1;Parent=MS.gene32092 |
| chr1.2 | exon | 55724928 | 55725425 | 55724928 | ID=MS.gene32092.t1.exon1;Parent=MS.gene32092.t1 |
| chr1.2 | CDS | 55724928 | 55725425 | 55724928 | ID=cds.MS.gene32092.t1;Parent=MS.gene32092.t1 |
| chr1.2 | exon | 55723492 | 55724047 | 55723492 | ID=MS.gene32092.t1.exon2;Parent=MS.gene32092.t1 |
| chr1.2 | CDS | 55723492 | 55724047 | 55723492 | ID=cds.MS.gene32092.t1;Parent=MS.gene32092.t1 |
| chr1.2 | exon | 55723150 | 55723401 | 55723150 | ID=MS.gene32092.t1.exon3;Parent=MS.gene32092.t1 |
| chr1.2 | CDS | 55723150 | 55723401 | 55723150 | ID=cds.MS.gene32092.t1;Parent=MS.gene32092.t1 |
| chr1.2 | exon | 55721899 | 55721990 | 55721899 | ID=MS.gene32092.t1.exon4;Parent=MS.gene32092.t1 |
| chr1.2 | CDS | 55721899 | 55721990 | 55721899 | ID=cds.MS.gene32092.t1;Parent=MS.gene32092.t1 |
| chr1.2 | exon | 55720980 | 55721189 | 55720980 | ID=MS.gene32092.t1.exon5;Parent=MS.gene32092.t1 |
| chr1.2 | CDS | 55720980 | 55721189 | 55720980 | ID=cds.MS.gene32092.t1;Parent=MS.gene32092.t1 |
| chr1.2 | exon | 55720512 | 55720901 | 55720512 | ID=MS.gene32092.t1.exon6;Parent=MS.gene32092.t1 |
| chr1.2 | CDS | 55720512 | 55720901 | 55720512 | ID=cds.MS.gene32092.t1;Parent=MS.gene32092.t1 |
| chr1.2 | exon | 55719622 | 55719791 | 55719622 | ID=MS.gene32092.t1.exon7;Parent=MS.gene32092.t1 |
| chr1.2 | CDS | 55719622 | 55719791 | 55719622 | ID=cds.MS.gene32092.t1;Parent=MS.gene32092.t1 |
| chr1.2 | exon | 55719376 | 55719469 | 55719376 | ID=MS.gene32092.t1.exon8;Parent=MS.gene32092.t1 |
| chr1.2 | CDS | 55719376 | 55719469 | 55719376 | ID=cds.MS.gene32092.t1;Parent=MS.gene32092.t1 |
| chr1.2 | exon | 55719226 | 55719279 | 55719226 | ID=MS.gene32092.t1.exon9;Parent=MS.gene32092.t1 |
| chr1.2 | CDS | 55719226 | 55719279 | 55719226 | ID=cds.MS.gene32092.t1;Parent=MS.gene32092.t1 |
| chr1.2 | exon | 55718892 | 55719068 | 55718892 | ID=MS.gene32092.t1.exon10;Parent=MS.gene32092.t1 |
| chr1.2 | CDS | 55718892 | 55719068 | 55718892 | ID=cds.MS.gene32092.t1;Parent=MS.gene32092.t1 |
| chr1.2 | exon | 55718726 | 55718791 | 55718726 | ID=MS.gene32092.t1.exon11;Parent=MS.gene32092.t1 |
| chr1.2 | CDS | 55718726 | 55718791 | 55718726 | ID=cds.MS.gene32092.t1;Parent=MS.gene32092.t1 |
| chr1.2 | exon | 55717778 | 55717891 | 55717778 | ID=MS.gene32092.t1.exon12;Parent=MS.gene32092.t1 |
| chr1.2 | CDS | 55717778 | 55717891 | 55717778 | ID=cds.MS.gene32092.t1;Parent=MS.gene32092.t1 |
| chr1.2 | exon | 55717464 | 55717625 | 55717464 | ID=MS.gene32092.t1.exon13;Parent=MS.gene32092.t1 |
| chr1.2 | CDS | 55717464 | 55717625 | 55717464 | ID=cds.MS.gene32092.t1;Parent=MS.gene32092.t1 |
| chr1.2 | exon | 55717240 | 55717368 | 55717240 | ID=MS.gene32092.t1.exon14;Parent=MS.gene32092.t1 |
| chr1.2 | CDS | 55717240 | 55717368 | 55717240 | ID=cds.MS.gene32092.t1;Parent=MS.gene32092.t1 |
| chr1.2 | exon | 55717004 | 55717105 | 55717004 | ID=MS.gene32092.t1.exon15;Parent=MS.gene32092.t1 |
| chr1.2 | CDS | 55717004 | 55717105 | 55717004 | ID=cds.MS.gene32092.t1;Parent=MS.gene32092.t1 |
| chr1.2 | exon | 55714906 | 55714985 | 55714906 | ID=MS.gene32092.t1.exon16;Parent=MS.gene32092.t1 |
| chr1.2 | CDS | 55714906 | 55714985 | 55714906 | ID=cds.MS.gene32092.t1;Parent=MS.gene32092.t1 |
| chr1.2 | exon | 55714299 | 55714442 | 55714299 | ID=MS.gene32092.t1.exon17;Parent=MS.gene32092.t1 |
| chr1.2 | CDS | 55714299 | 55714442 | 55714299 | ID=cds.MS.gene32092.t1;Parent=MS.gene32092.t1 |
| chr1.2 | exon | 55713425 | 55714040 | 55713425 | ID=MS.gene32092.t1.exon18;Parent=MS.gene32092.t1 |
| chr1.2 | CDS | 55713425 | 55714040 | 55713425 | ID=cds.MS.gene32092.t1;Parent=MS.gene32092.t1 |
| Gene Sequence |
| Protein sequence |
