Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32091.t1 | XP_003590714.2 | 97.7 | 1288 | 29 | 0 | 1 | 1288 | 1 | 1288 | 0.00E+00 | 2396.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32091.t1 | Q5ZKD5 | 26.2 | 1288 | 786 | 30 | 5 | 1243 | 91 | 1263 | 6.3e-92 | 340.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32091.t1 | G7I2M7 | 97.7 | 1288 | 29 | 0 | 1 | 1288 | 1 | 1288 | 0.0e+00 | 2396.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049207 | MS.gene32091 | 0.834501 | 2.89E-56 | -1.69E-46 |
MS.gene049254 | MS.gene32091 | 0.800111 | 1.68E-48 | -1.69E-46 |
MS.gene049283 | MS.gene32091 | 0.816611 | 5.06E-52 | -1.69E-46 |
MS.gene049473 | MS.gene32091 | 0.805016 | 1.64E-49 | -1.69E-46 |
MS.gene049824 | MS.gene32091 | 0.856488 | 3.11E-62 | -1.69E-46 |
MS.gene049825 | MS.gene32091 | 0.838695 | 2.47E-57 | -1.69E-46 |
MS.gene049863 | MS.gene32091 | 0.805834 | 1.10E-49 | -1.69E-46 |
MS.gene049873 | MS.gene32091 | 0.812655 | 3.80E-51 | -1.69E-46 |
MS.gene050885 | MS.gene32091 | 0.840155 | 1.03E-57 | -1.69E-46 |
MS.gene050945 | MS.gene32091 | 0.820079 | 8.29E-53 | -1.69E-46 |
MS.gene051363 | MS.gene32091 | 0.819668 | 1.03E-52 | -1.69E-46 |
MS.gene051365 | MS.gene32091 | 0.817372 | 3.41E-52 | -1.69E-46 |
MS.gene051597 | MS.gene32091 | 0.826026 | 3.40E-54 | -1.69E-46 |
MS.gene051700 | MS.gene32091 | 0.809263 | 2.06E-50 | -1.69E-46 |
MS.gene051744 | MS.gene32091 | 0.803524 | 3.35E-49 | -1.69E-46 |
MS.gene051832 | MS.gene32091 | 0.805405 | 1.36E-49 | -1.69E-46 |
MS.gene05188 | MS.gene32091 | 0.830137 | 3.48E-55 | -1.69E-46 |
MS.gene051975 | MS.gene32091 | 0.816328 | 5.85E-52 | -1.69E-46 |
MS.gene052533 | MS.gene32091 | 0.801061 | 1.08E-48 | -1.69E-46 |
MS.gene052582 | MS.gene32091 | 0.817854 | 2.66E-52 | -1.69E-46 |
MS.gene052584 | MS.gene32091 | 0.827042 | 1.95E-54 | -1.69E-46 |
MS.gene052717 | MS.gene32091 | 0.831561 | 1.56E-55 | -1.69E-46 |
MS.gene053058 | MS.gene32091 | 0.831451 | 1.66E-55 | -1.69E-46 |
MS.gene053080 | MS.gene32091 | 0.818198 | 2.22E-52 | -1.69E-46 |
MS.gene05308 | MS.gene32091 | 0.80488 | 1.75E-49 | -1.69E-46 |
MS.gene053122 | MS.gene32091 | 0.825349 | 4.92E-54 | -1.69E-46 |
MS.gene053226 | MS.gene32091 | 0.847391 | 1.19E-59 | -1.69E-46 |
MS.gene05364 | MS.gene32091 | 0.803406 | 3.54E-49 | -1.69E-46 |
MS.gene053963 | MS.gene32091 | 0.809445 | 1.89E-50 | -1.69E-46 |
MS.gene053995 | MS.gene32091 | 0.821552 | 3.80E-53 | -1.69E-46 |
MS.gene054413 | MS.gene32091 | 0.800809 | 1.21E-48 | -1.69E-46 |
MS.gene054576 | MS.gene32091 | 0.801035 | 1.09E-48 | -1.69E-46 |
MS.gene054651 | MS.gene32091 | 0.804736 | 1.87E-49 | -1.69E-46 |
MS.gene055513 | MS.gene32091 | 0.810388 | 1.18E-50 | -1.69E-46 |
MS.gene055808 | MS.gene32091 | 0.818478 | 1.92E-52 | -1.69E-46 |
MS.gene056045 | MS.gene32091 | 0.801032 | 1.09E-48 | -1.69E-46 |
MS.gene056091 | MS.gene32091 | 0.827584 | 1.44E-54 | -1.69E-46 |
MS.gene056403 | MS.gene32091 | 0.901885 | 1.70E-78 | -1.69E-46 |
MS.gene05659 | MS.gene32091 | 0.815472 | 9.08E-52 | -1.69E-46 |
MS.gene056605 | MS.gene32091 | 0.894319 | 2.76E-75 | -1.69E-46 |
MS.gene056786 | MS.gene32091 | 0.80149 | 8.78E-49 | -1.69E-46 |
MS.gene05689 | MS.gene32091 | 0.840454 | 8.61E-58 | -1.69E-46 |
MS.gene056986 | MS.gene32091 | 0.813873 | 2.05E-51 | -1.69E-46 |
MS.gene057102 | MS.gene32091 | 0.838348 | 3.03E-57 | -1.69E-46 |
MS.gene05781 | MS.gene32091 | 0.803099 | 4.10E-49 | -1.69E-46 |
MS.gene058126 | MS.gene32091 | 0.811099 | 8.29E-51 | -1.69E-46 |
MS.gene059146 | MS.gene32091 | 0.820308 | 7.34E-53 | -1.69E-46 |
MS.gene05950 | MS.gene32091 | 0.804487 | 2.11E-49 | -1.69E-46 |
MS.gene05954 | MS.gene32091 | 0.817154 | 3.82E-52 | -1.69E-46 |
MS.gene05978 | MS.gene32091 | 0.803403 | 3.54E-49 | -1.69E-46 |
MS.gene05985 | MS.gene32091 | -0.826184 | 3.12E-54 | -1.69E-46 |
MS.gene059901 | MS.gene32091 | -0.815388 | 9.49E-52 | -1.69E-46 |
MS.gene059935 | MS.gene32091 | 0.865981 | 3.98E-65 | -1.69E-46 |
MS.gene06011 | MS.gene32091 | 0.813252 | 2.81E-51 | -1.69E-46 |
MS.gene060365 | MS.gene32091 | 0.827257 | 1.73E-54 | -1.69E-46 |
MS.gene060763 | MS.gene32091 | 0.863704 | 2.06E-64 | -1.69E-46 |
MS.gene060830 | MS.gene32091 | 0.870209 | 1.73E-66 | -1.69E-46 |
MS.gene060933 | MS.gene32091 | 0.823987 | 1.03E-53 | -1.69E-46 |
MS.gene060935 | MS.gene32091 | 0.831007 | 2.13E-55 | -1.69E-46 |
MS.gene060937 | MS.gene32091 | 0.83761 | 4.70E-57 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32091.t1 | MTR_1g072890 | 97.748 | 1288 | 29 | 0 | 1 | 1288 | 1 | 1288 | 0.0 | 2591 |
MS.gene32091.t1 | MTR_1g072970 | 86.559 | 1302 | 150 | 6 | 1 | 1288 | 1 | 1291 | 0.0 | 2265 |
MS.gene32091.t1 | MTR_1g072890 | 97.356 | 1021 | 27 | 0 | 1 | 1021 | 1 | 1021 | 0.0 | 2046 |
MS.gene32091.t1 | MTR_1g053255 | 29.141 | 1129 | 733 | 23 | 10 | 1103 | 8 | 1104 | 2.18e-108 | 369 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene32091.t1 | AT2G34357 | 52.780 | 1277 | 565 | 16 | 16 | 1285 | 24 | 1269 | 0.0 | 1225 |
MS.gene32091.t1 | AT4G23540 | 28.757 | 1078 | 688 | 25 | 14 | 1051 | 18 | 1055 | 3.21e-111 | 377 |
Find 253 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGCTGTTCTTCTCCGCTTT+TGG | 0.114005 | 1.2:-55710870 | None:intergenic |
TTTACTTTGTGCAGATATTT+TGG | 0.170487 | 1.2:+55704485 | MS.gene32091:intron |
ATCCTTTATACCATTGAATT+TGG | 0.176595 | 1.2:+55705774 | MS.gene32091:CDS |
ACCTCATCAAATGAGATTTC+TGG | 0.183929 | 1.2:+55704276 | MS.gene32091:CDS |
TGAGGTTCTGCTTGGGCTTA+TGG | 0.208576 | 1.2:+55707542 | MS.gene32091:CDS |
CAGATCTTTCAACAAGTTCT+TGG | 0.242536 | 1.2:-55706340 | None:intergenic |
GGCCAATCTTGGTTTATTAA+AGG | 0.244569 | 1.2:+55709197 | MS.gene32091:intron |
TAGAAATTGCCTTGCCGTTC+AGG | 0.255024 | 1.2:-55710260 | None:intergenic |
TGCCTATGATTGGACGTATT+AGG | 0.272542 | 1.2:+55705893 | MS.gene32091:CDS |
TCAAATGATAAAGATGATAT+TGG | 0.273601 | 1.2:+55706234 | MS.gene32091:CDS |
TCCGCAATGTTTCACAAATT+AGG | 0.275204 | 1.2:+55704729 | MS.gene32091:CDS |
ATTTATCTGTGTCAAATATA+TGG | 0.275809 | 1.2:+55705806 | MS.gene32091:CDS |
ATAAAGGATAAGAAAGTTTC+AGG | 0.277939 | 1.2:-55705760 | None:intergenic |
ATTAACCAAGACTTGTTCTT+TGG | 0.291284 | 1.2:-55706268 | None:intergenic |
GCCTATGATTGGACGTATTA+GGG | 0.297196 | 1.2:+55705894 | MS.gene32091:CDS |
CAATCCTTCTGCTTGTGATT+TGG | 0.298079 | 1.2:-55709229 | None:intergenic |
CATATTATTCCACGAATATC+AGG | 0.314917 | 1.2:-55706165 | None:intergenic |
CTGAAGGACGTTTGATTATC+CGG | 0.320522 | 1.2:+55710749 | MS.gene32091:CDS |
TGATGAGAGTTTGATTAAAC+AGG | 0.320857 | 1.2:+55704575 | MS.gene32091:CDS |
TGCATCTGTGGCTGCGAATA+TGG | 0.321152 | 1.2:-55704526 | None:intergenic |
AATCAGCAGCATCGTCATTC+AGG | 0.322268 | 1.2:+55710310 | MS.gene32091:CDS |
TTTCGCATTTGTTGATTCAT+AGG | 0.325836 | 1.2:+55703152 | MS.gene32091:CDS |
AAGCACTTGCTTACTCTTTG+TGG | 0.327363 | 1.2:+55706049 | MS.gene32091:CDS |
AGCTTGAACCTTATGCATAT+TGG | 0.332365 | 1.2:+55710974 | MS.gene32091:CDS |
AGTATTAAAGCCAGCATTGC+AGG | 0.334576 | 1.2:+55707132 | MS.gene32091:CDS |
TCGGAGAGTGTCGTTGTTGA+TGG | 0.337791 | 1.2:+55703118 | MS.gene32091:CDS |
CTGTGGTAAATATGACAAAA+AGG | 0.345210 | 1.2:+55711064 | MS.gene32091:CDS |
AACCTTTAATAAACCAAGAT+TGG | 0.349531 | 1.2:-55709199 | None:intergenic |
TTCCAAATTCAATGGTATAA+AGG | 0.353034 | 1.2:-55705776 | None:intergenic |
AGTAAAGACAATCAAGTCTA+TGG | 0.356481 | 1.2:-55707599 | None:intergenic |
GTCGAAGTCGCCCATGCATT+TGG | 0.359151 | 1.2:+55708757 | MS.gene32091:CDS |
AAATATGCGACTGGAGTAGA+AGG | 0.363381 | 1.2:-55702908 | None:intergenic |
TCTACTCCAGTCGCATATTT+CGG | 0.364502 | 1.2:+55702911 | MS.gene32091:CDS |
TTCTCCGTGTAGGCCAATCT+TGG | 0.365341 | 1.2:+55709186 | MS.gene32091:intron |
AGTTAGACCTGTTTCCTAAA+GGG | 0.366515 | 1.2:-55705137 | None:intergenic |
GGTAAGAAGGCAATCCCATT+TGG | 0.370830 | 1.2:+55703888 | MS.gene32091:intron |
TGAGGTGTTGTGCACATTAT+CGG | 0.374283 | 1.2:+55704245 | MS.gene32091:CDS |
TTCTCCATCCTCGAAGAATT+CGG | 0.393160 | 1.2:+55703099 | MS.gene32091:CDS |
CAAAATGCCAACAGAATAGA+TGG | 0.394116 | 1.2:+55706829 | MS.gene32091:CDS |
CTTGCAGACAAATGACTATC+AGG | 0.396859 | 1.2:-55710832 | None:intergenic |
ATTATCACTATGCTGCTGCC+TGG | 0.397194 | 1.2:+55704685 | MS.gene32091:CDS |
GAACAGGGCTTATGACATTC+TGG | 0.398126 | 1.2:+55708735 | MS.gene32091:CDS |
CCTAGTCACTAGGCGCATAA+TGG | 0.399891 | 1.2:+55704164 | MS.gene32091:CDS |
TACTTTGCAGCTTGAGAAGC+AGG | 0.404455 | 1.2:+55705999 | MS.gene32091:intron |
CTAATAAGAAAACCAGGAAC+AGG | 0.405034 | 1.2:+55708719 | MS.gene32091:CDS |
TAGGTTGCTCGCGGCCTTGT+TGG | 0.405180 | 1.2:+55708938 | MS.gene32091:intron |
TTTCCTCACTGAGATAATAC+TGG | 0.407293 | 1.2:+55707896 | MS.gene32091:CDS |
AATGTCATAAGCCCTGTTCC+TGG | 0.407903 | 1.2:-55708731 | None:intergenic |
CGAAGCTTGAGGTTCTGCTT+GGG | 0.409869 | 1.2:+55707535 | MS.gene32091:CDS |
CAAATGATAAAGATGATATT+GGG | 0.410170 | 1.2:+55706235 | MS.gene32091:CDS |
AGACATCACGGAGGCCCAAA+TGG | 0.410616 | 1.2:-55703903 | None:intergenic |
ATGACGTGGTCAGGTGGATT+AGG | 0.413555 | 1.2:-55702971 | None:intergenic |
GGATCAGCCCTTGTTGCAAT+GGG | 0.414422 | 1.2:+55705736 | MS.gene32091:CDS |
CTTGGTTAATTACTCGCAAC+AGG | 0.414607 | 1.2:+55706281 | MS.gene32091:CDS |
TCGAAGCTTGAGGTTCTGCT+TGG | 0.418257 | 1.2:+55707534 | MS.gene32091:CDS |
AGATGATGGTGGTTGTTTGC+AGG | 0.419096 | 1.2:+55706389 | MS.gene32091:CDS |
TTCGCAGTTTCATTGTTGCC+TGG | 0.419426 | 1.2:+55707076 | MS.gene32091:CDS |
CGTCAAAGGTTTAGCTCGCT+TGG | 0.420509 | 1.2:+55708988 | MS.gene32091:CDS |
GCAGAGGTGTTGGTGGTTAA+CGG | 0.421525 | 1.2:-55702840 | None:intergenic |
ATCTCAGTGAGGAAAACTTC+TGG | 0.421709 | 1.2:-55707888 | None:intergenic |
AGAAGTTTCATATGTTCTTC+AGG | 0.428141 | 1.2:-55709504 | None:intergenic |
CTCCGACAAACCTGCAATGC+TGG | 0.428906 | 1.2:-55707142 | None:intergenic |
CTAAAGGGAAAATCTTCATC+AGG | 0.430536 | 1.2:-55705122 | None:intergenic |
CAGAGCCTGGTAGGGCTGGT+AGG | 0.435386 | 1.2:+55710890 | MS.gene32091:CDS |
TGGATCAGCCCTTGTTGCAA+TGG | 0.440463 | 1.2:+55705735 | MS.gene32091:CDS |
AGAGCCTGGTAGGGCTGGTA+GGG | 0.440903 | 1.2:+55710891 | MS.gene32091:CDS |
CAAAGGTAGGCATTCTTTCA+AGG | 0.441898 | 1.2:-55704076 | None:intergenic |
AGATGATATTGGGCAAGATA+TGG | 0.443019 | 1.2:+55706245 | MS.gene32091:CDS |
AGCGAGTCGATGACGTGGTC+AGG | 0.443965 | 1.2:-55702980 | None:intergenic |
AGGAACTAAGGGAGCCCAAC+AGG | 0.447331 | 1.2:+55704035 | MS.gene32091:CDS |
TGCTTGATCGGCAGAAAGTA+AGG | 0.447864 | 1.2:+55710659 | MS.gene32091:CDS |
ACTGCTCGCTTGCTTGATGC+TGG | 0.451373 | 1.2:+55704315 | MS.gene32091:CDS |
AACAGAAAATTTGAGGGCAT+TGG | 0.453453 | 1.2:+55706308 | MS.gene32091:CDS |
CCATTATGCGCCTAGTGACT+AGG | 0.453764 | 1.2:-55704164 | None:intergenic |
ATGAATCGTTACCTTCGGTC+TGG | 0.454119 | 1.2:-55703239 | None:intergenic |
TCGAGCAGGACAAATGTAGA+TGG | 0.455711 | 1.2:-55709055 | None:intergenic |
GTAAGAAGGCAATCCCATTT+GGG | 0.457342 | 1.2:+55703889 | MS.gene32091:CDS |
ACAATCAAGTCTATGGCGTT+TGG | 0.458967 | 1.2:-55707592 | None:intergenic |
CCGTCTGTTCCCTTTCCTCC+CGG | 0.460840 | 1.2:-55710768 | None:intergenic |
TCTTCAGCTTCCAAATTCAA+TGG | 0.460919 | 1.2:-55705784 | None:intergenic |
AAGCTGGTGGAGATATTAAG+AGG | 0.462137 | 1.2:+55710944 | MS.gene32091:CDS |
CTTGAAGGCAAGAGTGCCTC+TGG | 0.463007 | 1.2:+55711087 | MS.gene32091:CDS |
GTGTTGGTGGTTAACGGCGG+TGG | 0.463079 | 1.2:-55702834 | None:intergenic |
TCCCTAATACGTCCAATCAT+AGG | 0.465765 | 1.2:-55705895 | None:intergenic |
ACGGTTGCACTTATCATATG+TGG | 0.468050 | 1.2:-55708968 | None:intergenic |
TGAATTGCATATGTCATCGT+TGG | 0.468163 | 1.2:-55702789 | None:intergenic |
GTTTCATATGTTCTTCAGGC+AGG | 0.470768 | 1.2:-55709500 | None:intergenic |
ACAGCAGAGCCTGGTAGGGC+TGG | 0.471151 | 1.2:+55710886 | MS.gene32091:CDS |
ATGAATCTCAATCAGTTCTC+AGG | 0.474206 | 1.2:+55706887 | MS.gene32091:CDS |
ATACCTTTGATTTCGAGTCT+TGG | 0.476758 | 1.2:-55707686 | None:intergenic |
TTCATAGGGATAGTGTTCAT+TGG | 0.476869 | 1.2:+55703167 | MS.gene32091:CDS |
AGTATACCTCTCATAAAGTA+AGG | 0.479237 | 1.2:-55705071 | None:intergenic |
CTGGATGAATCAAGGAGATC+AGG | 0.479568 | 1.2:+55704615 | MS.gene32091:CDS |
TAGACAAAACAAGAACATAA+AGG | 0.479604 | 1.2:+55706209 | MS.gene32091:CDS |
GACACTCTCCGAATTCTTCG+AGG | 0.485481 | 1.2:-55703107 | None:intergenic |
CATTATGCGCCTAGTGACTA+GGG | 0.486726 | 1.2:-55704163 | None:intergenic |
AGACACAGCTAAAAGCTTCA+AGG | 0.487391 | 1.2:+55706104 | MS.gene32091:CDS |
AAAGAAGAACCTGATATTCG+TGG | 0.488875 | 1.2:+55706156 | MS.gene32091:CDS |
CCTAGCATCATATTCTGAAT+CGG | 0.488966 | 1.2:-55710803 | None:intergenic |
TGAAGGACGTTTGATTATCC+GGG | 0.489005 | 1.2:+55710750 | MS.gene32091:CDS |
TCTCCTCGTCTCCAAATGCA+TGG | 0.489991 | 1.2:-55708768 | None:intergenic |
TAGTTAGACCTGTTTCCTAA+AGG | 0.491566 | 1.2:-55705138 | None:intergenic |
CTTGGACTGTTAAGAAGTAA+AGG | 0.492219 | 1.2:-55707668 | None:intergenic |
CATCTCATCATCGTCTGACC+TGG | 0.494658 | 1.2:-55710716 | None:intergenic |
TTCGCATTTGTTGATTCATA+GGG | 0.495983 | 1.2:+55703153 | MS.gene32091:CDS |
AGTCATTTGTCTGCAAGGTC+CGG | 0.497944 | 1.2:+55710838 | MS.gene32091:CDS |
AGGTTGCAACAGAAAATTTG+AGG | 0.498991 | 1.2:+55706301 | MS.gene32091:CDS |
TCCTTCTTCAACACAGCTAC+GGG | 0.499484 | 1.2:-55703037 | None:intergenic |
CAAGCGAGCTAAACCTTTGA+CGG | 0.500697 | 1.2:-55708987 | None:intergenic |
AAATGCTGGTGAAGGAACTA+AGG | 0.500927 | 1.2:+55704023 | MS.gene32091:CDS |
TATTAGGGAGAAGGCTCAAA+AGG | 0.501198 | 1.2:+55705909 | MS.gene32091:CDS |
GAGTCGTCGGCCACAACATA+GGG | 0.502468 | 1.2:+55711017 | MS.gene32091:CDS |
CGGAGAAGAACAGCAGAGCC+TGG | 0.503610 | 1.2:+55710877 | MS.gene32091:CDS |
TTTGATTATCCGGGAGGAAA+GGG | 0.504061 | 1.2:+55710759 | MS.gene32091:CDS |
CTGGAGTAGAAGGGAGGTTG+TGG | 0.504407 | 1.2:-55702898 | None:intergenic |
AGTGAGGAAAACTTCTGGCC+AGG | 0.505041 | 1.2:-55707883 | None:intergenic |
GTTTGATTATCCGGGAGGAA+AGG | 0.505910 | 1.2:+55710758 | MS.gene32091:CDS |
ATGATAAGTGCAACCGTCAA+AGG | 0.509071 | 1.2:+55708974 | MS.gene32091:CDS |
GAGTTTGATTAAACAGGGAG+TGG | 0.510391 | 1.2:+55704581 | MS.gene32091:CDS |
CCTCACTTGACCGCATCGTA+CGG | 0.510641 | 1.2:+55702945 | MS.gene32091:CDS |
CTCCTTCTTCAACACAGCTA+CGG | 0.511006 | 1.2:-55703038 | None:intergenic |
TTGGATTCGTTGTTGAATGT+TGG | 0.511127 | 1.2:-55702770 | None:intergenic |
GATCATGGAAGGAATCGAAA+TGG | 0.513498 | 1.2:+55702742 | None:intergenic |
GAAGAACAGCAGAGCCTGGT+AGG | 0.515608 | 1.2:+55710881 | MS.gene32091:CDS |
GAAGGATAGTTACAAAATGA+AGG | 0.516245 | 1.2:-55706081 | None:intergenic |
TTAGATCTGAGAATCTCAAA+AGG | 0.517424 | 1.2:+55710689 | MS.gene32091:CDS |
TGAGTCGTCGGCCACAACAT+AGG | 0.517871 | 1.2:+55711016 | MS.gene32091:CDS |
AGATCAAGGAGCGGAAAGAG+AGG | 0.518453 | 1.2:+55709615 | MS.gene32091:intron |
GCTTATCACGAAGTGTGGAT+TGG | 0.518922 | 1.2:+55709461 | MS.gene32091:CDS |
GCATCATATTCTGAATCGGC+TGG | 0.519730 | 1.2:-55710799 | None:intergenic |
GATCATTATTTGCAGGATGT+TGG | 0.519934 | 1.2:+55707235 | MS.gene32091:intron |
CTGAAATCTACAAAAGATGA+TGG | 0.520706 | 1.2:+55706375 | MS.gene32091:CDS |
TCAAGTGGCCAATATGCATA+AGG | 0.523498 | 1.2:-55710982 | None:intergenic |
TGGTGGAGATATTAAGAGGA+AGG | 0.524645 | 1.2:+55710948 | MS.gene32091:CDS |
CTGCCGACAGGATGATTCAA+TGG | 0.525113 | 1.2:+55707860 | MS.gene32091:intron |
TTCAGGTCCCATTGCAACAA+GGG | 0.527489 | 1.2:-55705743 | None:intergenic |
AGTTCTTGCAACAGGTAAGA+AGG | 0.528260 | 1.2:+55703875 | MS.gene32091:intron |
CTCACTTGACCGCATCGTAC+GGG | 0.529353 | 1.2:+55702946 | MS.gene32091:CDS |
CAACACCTCTGCACCGTCAT+CGG | 0.530998 | 1.2:+55702851 | MS.gene32091:CDS |
GTGCAGCTTCATACGTGCCT+TGG | 0.531128 | 1.2:+55705715 | MS.gene32091:intron |
GCCCGTAGCTGTGTTGAAGA+AGG | 0.531646 | 1.2:+55703036 | MS.gene32091:CDS |
CTCTCCGAATTCTTCGAGGA+TGG | 0.532087 | 1.2:-55703103 | None:intergenic |
AGCCACTTGATTTGCTTGAT+CGG | 0.532416 | 1.2:+55710647 | MS.gene32091:CDS |
GACATCACGGAGGCCCAAAT+GGG | 0.532838 | 1.2:-55703902 | None:intergenic |
GATAATACTGGCTCTTAAAG+AGG | 0.532942 | 1.2:+55707908 | MS.gene32091:CDS |
GTCTGAACCATCTATTCTGT+TGG | 0.538070 | 1.2:-55706836 | None:intergenic |
CACCTCAAGCAGTGCTTCAG+AGG | 0.538707 | 1.2:-55704229 | None:intergenic |
CGTCATCGGCGCAATGTCAC+AGG | 0.538926 | 1.2:+55702865 | MS.gene32091:CDS |
TATGGCCAAAGAACAAGTCT+TGG | 0.539050 | 1.2:+55706263 | MS.gene32091:CDS |
AGCAAGGTCAGAGAATTCAT+AGG | 0.539362 | 1.2:-55709011 | None:intergenic |
CAAGAACATACAAAACCTGT+TGG | 0.540635 | 1.2:-55704050 | None:intergenic |
AGATAACTCTGGATGAATCA+AGG | 0.542333 | 1.2:+55704607 | MS.gene32091:CDS |
TGTTGGTGTCATGCAGAAGA+AGG | 0.543631 | 1.2:+55707252 | MS.gene32091:CDS |
GACAGGATGATTCAATGGCC+TGG | 0.544833 | 1.2:+55707865 | MS.gene32091:intron |
AGAATCTCAAAAGGAAGTCC+AGG | 0.546874 | 1.2:+55710698 | MS.gene32091:CDS |
GGGATGCTTATCACGAAGTG+TGG | 0.547145 | 1.2:+55709456 | MS.gene32091:CDS |
ATTCCATTTCCGATCATGGA+AGG | 0.548811 | 1.2:+55702731 | None:intergenic |
TTATCACTATGCTGCTGCCT+GGG | 0.549257 | 1.2:+55704686 | MS.gene32091:CDS |
GGTTGCAACAGAAAATTTGA+GGG | 0.550727 | 1.2:+55706302 | MS.gene32091:CDS |
TTTGCAGCAGCCCTATGTTG+TGG | 0.551398 | 1.2:-55711027 | None:intergenic |
GATTCGTCAGACAAGTGCTC+AGG | 0.554011 | 1.2:-55710616 | None:intergenic |
TCTTACTGATTCCAGACCGA+AGG | 0.555237 | 1.2:+55703228 | MS.gene32091:CDS |
TCAACTAACCTTGCGTATGT+TGG | 0.557578 | 1.2:-55709529 | None:intergenic |
TTTCAAAAGCAACTACATCC+AGG | 0.559469 | 1.2:+55709675 | MS.gene32091:CDS |
CTGATAGTCATTTGTCTGCA+AGG | 0.559535 | 1.2:+55710833 | MS.gene32091:CDS |
CGCCCATGCATTTGGAGACG+AGG | 0.560462 | 1.2:+55708765 | MS.gene32091:CDS |
CTGTGACATTGCGCCGATGA+CGG | 0.561333 | 1.2:-55702864 | None:intergenic |
CGATGACGGTGCAGAGGTGT+TGG | 0.562762 | 1.2:-55702850 | None:intergenic |
TGGTTGAGTGTTTGTTTCAG+TGG | 0.562799 | 1.2:+55709271 | MS.gene32091:CDS |
CTCCTCGTCTCCAAATGCAT+GGG | 0.565443 | 1.2:-55708767 | None:intergenic |
TTCCTCTGAAGCACTGCTTG+AGG | 0.565535 | 1.2:+55704227 | MS.gene32091:CDS |
GCATTTGGAGACGAGGAGAA+AGG | 0.567246 | 1.2:+55708772 | MS.gene32091:CDS |
AAGAACATACAAAACCTGTT+GGG | 0.567767 | 1.2:-55704049 | None:intergenic |
CAGGTCAGACGATGATGAGA+TGG | 0.570043 | 1.2:+55710717 | MS.gene32091:CDS |
AGGGACTGACAGTGTCATCA+AGG | 0.571222 | 1.2:+55706019 | MS.gene32091:CDS |
GATTGGACGTATTAGGGAGA+AGG | 0.572003 | 1.2:+55705900 | MS.gene32091:CDS |
TATGGCGTTTGGCAGAAGAA+TGG | 0.572032 | 1.2:-55707581 | None:intergenic |
TCAAATGAGATTTCTGGAGA+TGG | 0.575469 | 1.2:+55704282 | MS.gene32091:CDS |
TTTGGCATCTGAACATGAAG+AGG | 0.575489 | 1.2:+55704503 | MS.gene32091:CDS |
TATCACGAAGTGTGGATTGG+AGG | 0.576082 | 1.2:+55709464 | MS.gene32091:CDS |
GAACTCAACTTTGACTGCCT+CGG | 0.577235 | 1.2:-55707646 | None:intergenic |
GGGAGTGGATCAGATAACTC+TGG | 0.577650 | 1.2:+55704596 | MS.gene32091:CDS |
CCGATTCAGAATATGATGCT+AGG | 0.582895 | 1.2:+55710803 | MS.gene32091:CDS |
TAAGCCCTACCAGCCCTACC+AGG | 0.584920 | 1.2:-55710895 | None:intergenic |
TGCGTCAACCCCTAGTCACT+AGG | 0.585009 | 1.2:+55704154 | MS.gene32091:CDS |
AACTCTCCTTACTTTATGAG+AGG | 0.585087 | 1.2:+55705065 | MS.gene32091:CDS |
GTCACTAGGCGCATAATGGA+TGG | 0.585124 | 1.2:+55704168 | MS.gene32091:CDS |
TACAGGCTAATAAGAAAACC+AGG | 0.585447 | 1.2:+55708713 | MS.gene32091:intron |
ACCTAATTTGTGAAACATTG+CGG | 0.586553 | 1.2:-55704730 | None:intergenic |
GTAGCCAAATCACAAGCAGA+AGG | 0.588275 | 1.2:+55709225 | MS.gene32091:CDS |
AAGAACAGCAGAGCCTGGTA+GGG | 0.589719 | 1.2:+55710882 | MS.gene32091:CDS |
CCGTACGATGCGGTCAAGTG+AGG | 0.590673 | 1.2:-55702945 | None:intergenic |
TTTCAGGTCCCATTGCAACA+AGG | 0.591569 | 1.2:-55705744 | None:intergenic |
TTTGAGATCACTGAAAACAC+TGG | 0.591847 | 1.2:-55704388 | None:intergenic |
TTTGGAGACGAGGAGAAAGG+TGG | 0.594862 | 1.2:+55708775 | MS.gene32091:CDS |
CTATTAGCATCTGCGAGTGA+AGG | 0.596295 | 1.2:+55703949 | MS.gene32091:CDS |
AATCAAAAGCAGTTAAAGCA+AGG | 0.596980 | 1.2:-55709027 | None:intergenic |
TTGCAACAAGGGCTGATCCA+AGG | 0.597962 | 1.2:-55705732 | None:intergenic |
TGACGGTGCAGAGGTGTTGG+TGG | 0.598610 | 1.2:-55702847 | None:intergenic |
CTGCCTCGGACTTCATGACA+TGG | 0.599170 | 1.2:-55707632 | None:intergenic |
ACTTTGCAGCTTGAGAAGCA+GGG | 0.599256 | 1.2:+55706000 | MS.gene32091:intron |
TTGGAGACGAGGAGAAAGGT+GGG | 0.601042 | 1.2:+55708776 | MS.gene32091:CDS |
AATCATAGGCAAAATTTCGT+CGG | 0.602575 | 1.2:-55705881 | None:intergenic |
GAAAGTTTATCAAGACATCA+CGG | 0.603730 | 1.2:-55703915 | None:intergenic |
GAGTTTGATGGAGACAGCAA+AGG | 0.604231 | 1.2:+55710222 | MS.gene32091:CDS |
CCGGGAGGAAAGGGAACAGA+CGG | 0.606596 | 1.2:+55710768 | MS.gene32091:CDS |
AACGGCAAGGCAATTTCTAG+AGG | 0.609750 | 1.2:+55710264 | MS.gene32091:CDS |
TGGTAGGGCTTACACTGGAA+AGG | 0.611286 | 1.2:+55710906 | MS.gene32091:CDS |
GGTGGAGCAAATGCAAATGC+TGG | 0.613071 | 1.2:+55704009 | MS.gene32091:CDS |
GATGAGAGTTTGATTAAACA+GGG | 0.613401 | 1.2:+55704576 | MS.gene32091:CDS |
AGTCCAAGACTCGAAATCAA+AGG | 0.613427 | 1.2:+55707683 | MS.gene32091:CDS |
ACGGCAAGGCAATTTCTAGA+GGG | 0.621924 | 1.2:+55710265 | MS.gene32091:CDS |
GTTGCGCCGAAATATGCGAC+TGG | 0.625404 | 1.2:-55702917 | None:intergenic |
TGCCGATCAAGCAAATCAAG+TGG | 0.625596 | 1.2:-55710649 | None:intergenic |
TTGCGCCGATGACGGTGCAG+AGG | 0.626574 | 1.2:-55702856 | None:intergenic |
GAGCGGAAAGAGAGGAACCG+AGG | 0.627235 | 1.2:+55709623 | MS.gene32091:CDS |
TGCTGCTGATTTGAGATGTG+TGG | 0.628832 | 1.2:-55710298 | None:intergenic |
GGCAAGGCAATTTCTAGAGG+GGG | 0.631149 | 1.2:+55710267 | MS.gene32091:CDS |
GAGTCGATGACGTGGTCAGG+TGG | 0.631824 | 1.2:-55702977 | None:intergenic |
AATGCTGGTGAAGGAACTAA+GGG | 0.631940 | 1.2:+55704024 | MS.gene32091:CDS |
TAATAAGAAAACCAGGAACA+GGG | 0.632518 | 1.2:+55708720 | MS.gene32091:CDS |
TCCAGAAATCTCATTTGATG+AGG | 0.632522 | 1.2:-55704277 | None:intergenic |
GTCAGACGATGATGAGATGG+AGG | 0.633184 | 1.2:+55710720 | MS.gene32091:CDS |
TTGAGATCACTGAAAACACT+GGG | 0.634526 | 1.2:-55704387 | None:intergenic |
AGTTCTCTCGATCATACTCA+AGG | 0.635221 | 1.2:+55707282 | MS.gene32091:CDS |
GCAAATGCAAATGCTGGTGA+AGG | 0.636144 | 1.2:+55704015 | MS.gene32091:CDS |
GGAGGAAAGGGAACAGACGG+AGG | 0.636748 | 1.2:+55710771 | MS.gene32091:CDS |
GTGCTAAATCTGAAGAAACC+AGG | 0.641226 | 1.2:+55709645 | MS.gene32091:CDS |
CGGCAAGGCAATTTCTAGAG+GGG | 0.645153 | 1.2:+55710266 | MS.gene32091:CDS |
GAGATGGAGGTAGATTCTGA+AGG | 0.647548 | 1.2:+55710733 | MS.gene32091:CDS |
TTTCTTCAGATTTAGCACCT+CGG | 0.650186 | 1.2:-55709640 | None:intergenic |
AGGGCTGGTAGGGCTTACAC+TGG | 0.665086 | 1.2:+55710901 | MS.gene32091:CDS |
TGACAAGCGAGTCGATGACG+TGG | 0.667186 | 1.2:-55702985 | None:intergenic |
ACTTCTGACCAACATACGCA+AGG | 0.669281 | 1.2:+55709521 | MS.gene32091:CDS |
TTGTGAGCTTAGGTTGCTCG+CGG | 0.669687 | 1.2:+55708929 | MS.gene32091:intron |
TGCAGAATACCTGAACGGCA+AGG | 0.670993 | 1.2:+55710251 | MS.gene32091:CDS |
CCGGAACTAAAGCCCAAAAG+CGG | 0.676318 | 1.2:+55710857 | MS.gene32091:CDS |
TTGTAAAACAGATCAAGGAG+CGG | 0.680605 | 1.2:+55709606 | MS.gene32091:intron |
AATATGCGACTGGAGTAGAA+GGG | 0.681189 | 1.2:-55702907 | None:intergenic |
AGGACGTTTGATTATCCGGG+AGG | 0.685208 | 1.2:+55710753 | MS.gene32091:CDS |
ATGCGACTGGAGTAGAAGGG+AGG | 0.688446 | 1.2:-55702904 | None:intergenic |
AGTGATGCAGAATACCTGAA+CGG | 0.696328 | 1.2:+55710246 | MS.gene32091:CDS |
GATTAGGTTCCCGTACGATG+CGG | 0.698091 | 1.2:-55702955 | None:intergenic |
AAATCTACAAAAGATGATGG+TGG | 0.698268 | 1.2:+55706378 | MS.gene32091:CDS |
CTTCATAGAAAGCACGCCAG+AGG | 0.701114 | 1.2:-55711103 | None:intergenic |
ACTCCATGTCATGAAGTCCG+AGG | 0.707627 | 1.2:+55707629 | MS.gene32091:CDS |
ATTATGCGCCTAGTGACTAG+GGG | 0.709999 | 1.2:-55704162 | None:intergenic |
AAAGAATAAAGAGATAACCA+AGG | 0.711747 | 1.2:+55709081 | MS.gene32091:CDS |
GAGGTGTTGGTGGTTAACGG+CGG | 0.724078 | 1.2:-55702837 | None:intergenic |
GCAAATGCATCTGAAGAGCG+TGG | 0.729213 | 1.2:+55709251 | MS.gene32091:CDS |
CGTTTGGCAGAAGAATGGCA+AGG | 0.732352 | 1.2:-55707576 | None:intergenic |
GAGCCAGTATTATCTCAGTG+AGG | 0.735723 | 1.2:-55707899 | None:intergenic |
AGTTTATCAAGACATCACGG+AGG | 0.840719 | 1.2:-55703912 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 55702746 | 55711170 | 55702746 | ID=MS.gene32091 |
chr1.2 | mRNA | 55702746 | 55711170 | 55702746 | ID=MS.gene32091.t1;Parent=MS.gene32091 |
chr1.2 | exon | 55702746 | 55703249 | 55702746 | ID=MS.gene32091.t1.exon1;Parent=MS.gene32091.t1 |
chr1.2 | CDS | 55702746 | 55703249 | 55702746 | ID=cds.MS.gene32091.t1;Parent=MS.gene32091.t1 |
chr1.2 | exon | 55703889 | 55704411 | 55703889 | ID=MS.gene32091.t1.exon2;Parent=MS.gene32091.t1 |
chr1.2 | CDS | 55703889 | 55704411 | 55703889 | ID=cds.MS.gene32091.t1;Parent=MS.gene32091.t1 |
chr1.2 | exon | 55704499 | 55704750 | 55704499 | ID=MS.gene32091.t1.exon3;Parent=MS.gene32091.t1 |
chr1.2 | CDS | 55704499 | 55704750 | 55704499 | ID=cds.MS.gene32091.t1;Parent=MS.gene32091.t1 |
chr1.2 | exon | 55705060 | 55705151 | 55705060 | ID=MS.gene32091.t1.exon4;Parent=MS.gene32091.t1 |
chr1.2 | CDS | 55705060 | 55705151 | 55705060 | ID=cds.MS.gene32091.t1;Parent=MS.gene32091.t1 |
chr1.2 | exon | 55705721 | 55705930 | 55705721 | ID=MS.gene32091.t1.exon5;Parent=MS.gene32091.t1 |
chr1.2 | CDS | 55705721 | 55705930 | 55705721 | ID=cds.MS.gene32091.t1;Parent=MS.gene32091.t1 |
chr1.2 | exon | 55706009 | 55706410 | 55706009 | ID=MS.gene32091.t1.exon6;Parent=MS.gene32091.t1 |
chr1.2 | CDS | 55706009 | 55706410 | 55706009 | ID=cds.MS.gene32091.t1;Parent=MS.gene32091.t1 |
chr1.2 | exon | 55706739 | 55706908 | 55706739 | ID=MS.gene32091.t1.exon7;Parent=MS.gene32091.t1 |
chr1.2 | CDS | 55706739 | 55706908 | 55706739 | ID=cds.MS.gene32091.t1;Parent=MS.gene32091.t1 |
chr1.2 | exon | 55707060 | 55707153 | 55707060 | ID=MS.gene32091.t1.exon8;Parent=MS.gene32091.t1 |
chr1.2 | CDS | 55707060 | 55707153 | 55707060 | ID=cds.MS.gene32091.t1;Parent=MS.gene32091.t1 |
chr1.2 | exon | 55707250 | 55707303 | 55707250 | ID=MS.gene32091.t1.exon9;Parent=MS.gene32091.t1 |
chr1.2 | CDS | 55707250 | 55707303 | 55707250 | ID=cds.MS.gene32091.t1;Parent=MS.gene32091.t1 |
chr1.2 | exon | 55707513 | 55707704 | 55707513 | ID=MS.gene32091.t1.exon10;Parent=MS.gene32091.t1 |
chr1.2 | CDS | 55707513 | 55707704 | 55707513 | ID=cds.MS.gene32091.t1;Parent=MS.gene32091.t1 |
chr1.2 | exon | 55707870 | 55707929 | 55707870 | ID=MS.gene32091.t1.exon11;Parent=MS.gene32091.t1 |
chr1.2 | CDS | 55707870 | 55707929 | 55707870 | ID=cds.MS.gene32091.t1;Parent=MS.gene32091.t1 |
chr1.2 | exon | 55708718 | 55708831 | 55708718 | ID=MS.gene32091.t1.exon12;Parent=MS.gene32091.t1 |
chr1.2 | CDS | 55708718 | 55708831 | 55708718 | ID=cds.MS.gene32091.t1;Parent=MS.gene32091.t1 |
chr1.2 | exon | 55708941 | 55709102 | 55708941 | ID=MS.gene32091.t1.exon13;Parent=MS.gene32091.t1 |
chr1.2 | CDS | 55708941 | 55709102 | 55708941 | ID=cds.MS.gene32091.t1;Parent=MS.gene32091.t1 |
chr1.2 | exon | 55709198 | 55709326 | 55709198 | ID=MS.gene32091.t1.exon14;Parent=MS.gene32091.t1 |
chr1.2 | CDS | 55709198 | 55709326 | 55709198 | ID=cds.MS.gene32091.t1;Parent=MS.gene32091.t1 |
chr1.2 | exon | 55709441 | 55709542 | 55709441 | ID=MS.gene32091.t1.exon15;Parent=MS.gene32091.t1 |
chr1.2 | CDS | 55709441 | 55709542 | 55709441 | ID=cds.MS.gene32091.t1;Parent=MS.gene32091.t1 |
chr1.2 | exon | 55709617 | 55709696 | 55709617 | ID=MS.gene32091.t1.exon16;Parent=MS.gene32091.t1 |
chr1.2 | CDS | 55709617 | 55709696 | 55709617 | ID=cds.MS.gene32091.t1;Parent=MS.gene32091.t1 |
chr1.2 | exon | 55710188 | 55710331 | 55710188 | ID=MS.gene32091.t1.exon17;Parent=MS.gene32091.t1 |
chr1.2 | CDS | 55710188 | 55710331 | 55710188 | ID=cds.MS.gene32091.t1;Parent=MS.gene32091.t1 |
chr1.2 | exon | 55710588 | 55711170 | 55710588 | ID=MS.gene32091.t1.exon18;Parent=MS.gene32091.t1 |
chr1.2 | CDS | 55710588 | 55711170 | 55710588 | ID=cds.MS.gene32091.t1;Parent=MS.gene32091.t1 |
Gene Sequence |
Protein sequence |