Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40020.t1 | XP_003590720.2 | 94.3 | 1294 | 73 | 1 | 1 | 1293 | 1 | 1294 | 0.00E+00 | 2273.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40020.t1 | Q5ZKD5 | 25.3 | 1298 | 787 | 35 | 5 | 1245 | 91 | 1263 | 1.2e-74 | 283.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40020.t1 | G7I2N3 | 94.3 | 1294 | 73 | 1 | 1 | 1293 | 1 | 1294 | 0.0e+00 | 2273.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049824 | MS.gene40020 | 0.811116 | 8.22E-51 | -1.69E-46 |
| MS.gene055808 | MS.gene40020 | 0.821192 | 4.60E-53 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40020.t1 | MTR_1g072970 | 94.745 | 1294 | 67 | 1 | 1 | 1293 | 1 | 1294 | 0.0 | 2498 |
| MS.gene40020.t1 | MTR_1g072890 | 86.395 | 1301 | 153 | 5 | 1 | 1290 | 1 | 1288 | 0.0 | 2259 |
| MS.gene40020.t1 | MTR_1g072890 | 84.913 | 1034 | 132 | 5 | 1 | 1023 | 1 | 1021 | 0.0 | 1754 |
| MS.gene40020.t1 | MTR_1g053255 | 28.901 | 1083 | 712 | 24 | 7 | 1066 | 3 | 1050 | 2.52e-104 | 358 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40020.t1 | AT2G34357 | 51.322 | 1286 | 574 | 21 | 16 | 1288 | 24 | 1270 | 0.0 | 1177 |
| MS.gene40020.t1 | AT4G23540 | 28.818 | 1100 | 692 | 27 | 5 | 1061 | 10 | 1061 | 9.01e-110 | 373 |
Find 257 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCAGCTTCCAAATTTAA+TGG | 0.155327 | 1.4:+59697216 | None:intergenic |
| ATCCCTTATACCATTAAATT+TGG | 0.179078 | 1.4:-59697226 | MS.gene40020:CDS |
| CTTCCAAATTTAATGGTATA+AGG | 0.189743 | 1.4:+59697223 | None:intergenic |
| ACCTCATCAACTGAGATTTC+TGG | 0.202537 | 1.4:-59699664 | MS.gene40020:CDS |
| CTGCTGTTCTTCTTCGCTTC+TGG | 0.206041 | 1.4:+59689854 | None:intergenic |
| TGAGGTTCTGCTTGGGCTTA+TGG | 0.208576 | 1.4:-59695130 | MS.gene40020:CDS |
| CAGATCTTTCAACAAATTAT+TGG | 0.220117 | 1.4:+59696673 | None:intergenic |
| ATTTATCCGTCTCAAATAAA+TGG | 0.226752 | 1.4:-59697194 | MS.gene40020:CDS |
| TCCTCTATGTTTCACAAATT+AGG | 0.227959 | 1.4:-59699208 | MS.gene40020:intron |
| CATATTATTCCACGAATATT+AGG | 0.238036 | 1.4:+59696848 | None:intergenic |
| TTTCACATTTGTTGATTCAT+AGG | 0.241660 | 1.4:-59701061 | MS.gene40020:CDS |
| GGCCAATCTTGGTTTATTAA+AGG | 0.244569 | 1.4:-59693461 | MS.gene40020:CDS |
| TTCTCCCTGCAGGCCAATCT+TGG | 0.277069 | 1.4:-59693472 | MS.gene40020:intron |
| ATTATACAAGACTTGTTCTT+TGG | 0.291284 | 1.4:+59696745 | None:intergenic |
| CAATCCTTCTGCTTGTGATT+TGG | 0.298079 | 1.4:+59693429 | None:intergenic |
| TGCCTCTGTGGCTGCAAGTA+TGG | 0.299117 | 1.4:+59699411 | None:intergenic |
| TGGGAGAGTGGTGTTGTTCA+TGG | 0.303206 | 1.4:-59701095 | MS.gene40020:CDS |
| AGTAATAAAGCCAGCATTGC+AGG | 0.304957 | 1.4:-59695488 | MS.gene40020:intron |
| TCGCTTCTGGCCTTTAGTTC+CGG | 0.307234 | 1.4:+59689867 | None:intergenic |
| ACACACTTGTTTACTCTTTG+TGG | 0.311562 | 1.4:-59696964 | MS.gene40020:CDS |
| TGATGAAAGTTTGATTAAAC+AGG | 0.311799 | 1.4:-59699362 | MS.gene40020:CDS |
| ATTATCACTATGCTGCTTCT+TGG | 0.316544 | 1.4:-59699252 | MS.gene40020:CDS |
| AAATCAGCAGTGTCTTCATT+TGG | 0.329028 | 1.4:-59690417 | MS.gene40020:CDS |
| AGCTTGAACCTTATGCATAT+TGG | 0.332365 | 1.4:-59689750 | MS.gene40020:CDS |
| TCCCTTGCTCGTTCAATCAT+AGG | 0.348873 | 1.4:+59697105 | None:intergenic |
| AACCTTTAATAAACCAAGAT+TGG | 0.349531 | 1.4:+59693459 | None:intergenic |
| GTTCCTGTGCGATGCGGTCC+AGG | 0.354576 | 1.4:+59701258 | None:intergenic |
| AAGGTTGCTCGCGGCCTTGT+TGG | 0.356041 | 1.4:-59693720 | MS.gene40020:CDS |
| TAGACAAAACAAGAACATTC+AGG | 0.356460 | 1.4:-59696804 | MS.gene40020:CDS |
| AATAAAGGCAATCAAGTCTA+TGG | 0.356481 | 1.4:+59695073 | None:intergenic |
| CTGTGGTAAATATGACAAAA+AGG | 0.357847 | 1.4:-59689660 | MS.gene40020:CDS |
| TTCTGAATCGTCTACTTTGT+TGG | 0.358506 | 1.4:+59695785 | None:intergenic |
| AGGTTGCTCGCGGCCTTGTT+GGG | 0.364178 | 1.4:-59693719 | MS.gene40020:CDS |
| TCCATCCACATTTGTCCTGC+TGG | 0.368547 | 1.4:-59693604 | MS.gene40020:CDS |
| GAACAGGGCTTATGAAATTC+TGG | 0.371930 | 1.4:-59693966 | MS.gene40020:CDS |
| CCGTTATGCGCCTTGTGACT+AGG | 0.376054 | 1.4:+59699776 | None:intergenic |
| CATGGACTATCAAGAAATAA+AGG | 0.376348 | 1.4:+59695058 | None:intergenic |
| GTGTTGGTGGTTTGCGGCGG+TGG | 0.378305 | 1.4:+59701373 | None:intergenic |
| TTCCAAATTTAATGGTATAA+GGG | 0.379913 | 1.4:+59697224 | None:intergenic |
| CAAGAATATACAAAACTTGT+TGG | 0.382877 | 1.4:+59699890 | None:intergenic |
| TTCTCCTTCAACACAGCAAC+GGG | 0.387031 | 1.4:+59701170 | None:intergenic |
| ATTCTAAAACAGTATATTGT+TGG | 0.389703 | 1.4:-59697162 | MS.gene40020:CDS |
| AACACCTCAAGTAGTGCTTC+GGG | 0.393913 | 1.4:+59699709 | None:intergenic |
| GGGTCAGCTCTTGTTGCAAT+GGG | 0.394671 | 1.4:-59697264 | MS.gene40020:CDS |
| CTTGCAGACAAATGACTATC+AGG | 0.396859 | 1.4:+59689892 | None:intergenic |
| AATCAGCAGTGTCTTCATTT+GGG | 0.400201 | 1.4:-59690416 | MS.gene40020:intron |
| ATCATTTGCATTTGCTCCAC+CGG | 0.400256 | 1.4:+59699966 | None:intergenic |
| GAGTCGTCGGCCACAGCAAC+GGG | 0.401771 | 1.4:-59689707 | MS.gene40020:CDS |
| CATTCAGGATTCAAATGATA+AGG | 0.406494 | 1.4:-59696789 | MS.gene40020:CDS |
| TTTCCTCACTGAGATAATAC+TGG | 0.407293 | 1.4:-59694850 | MS.gene40020:CDS |
| CGAAGCTTGAGGTTCTGCTT+GGG | 0.409869 | 1.4:-59695137 | MS.gene40020:CDS |
| TTATCACTATGCTGCTTCTT+GGG | 0.410599 | 1.4:-59699251 | MS.gene40020:CDS |
| CGTTATGCGCCTTGTGACTA+GGG | 0.411687 | 1.4:+59699777 | None:intergenic |
| AATTTCATAAGCCCTGTTCC+TGG | 0.412637 | 1.4:+59693970 | None:intergenic |
| TGCAGCTTCATGCGTGCCTT+GGG | 0.415736 | 1.4:-59697284 | MS.gene40020:intron |
| TTCGCAGCTTCATTGTTGCC+TGG | 0.416944 | 1.4:-59695544 | MS.gene40020:CDS |
| AGTTCCCGTTGCTGTGTTGA+AGG | 0.418162 | 1.4:-59701174 | MS.gene40020:CDS |
| TCGAAGCTTGAGGTTCTGCT+TGG | 0.418257 | 1.4:-59695138 | MS.gene40020:CDS |
| AGATGATGGTGGTTGTTTGC+AGG | 0.419096 | 1.4:-59696624 | MS.gene40020:intron |
| TTTGAAGTGGTTAAGAATGT+TGG | 0.419659 | 1.4:+59699822 | None:intergenic |
| ATCTCAGTGAGGAAAACTTC+TGG | 0.421709 | 1.4:+59694858 | None:intergenic |
| TGGGTCAGCTCTTGTTGCAA+TGG | 0.423842 | 1.4:-59697265 | MS.gene40020:CDS |
| ACTGATTGAGACACGTCATT+TGG | 0.425094 | 1.4:+59695741 | None:intergenic |
| ATAGTGACCTGTTTCCTAAA+GGG | 0.427478 | 1.4:+59697916 | None:intergenic |
| CTTGTATAATTACTCGCAAC+AGG | 0.428147 | 1.4:-59696732 | MS.gene40020:CDS |
| TAACACCTCAAGTAGTGCTT+CGG | 0.429890 | 1.4:+59699708 | None:intergenic |
| AGACACAGCTAAAAGTTTCA+AGG | 0.430200 | 1.4:-59696909 | MS.gene40020:CDS |
| AGAAGTTTCATATGCTCTTC+AGG | 0.432031 | 1.4:+59693134 | None:intergenic |
| CTTAGACAAACCTGCAATGC+TGG | 0.433016 | 1.4:+59695478 | None:intergenic |
| CTTGAAGGCAAGAGTGTCTC+TGG | 0.435014 | 1.4:-59689637 | MS.gene40020:CDS |
| CAGAGCCTGGTAGGGCTGGT+AGG | 0.435386 | 1.4:-59689834 | MS.gene40020:CDS |
| GTGCAGCTTCATGCGTGCCT+TGG | 0.435418 | 1.4:-59697285 | MS.gene40020:intron |
| TGTTATGTTGCCATCGAGTT+GGG | 0.436433 | 1.4:-59701114 | MS.gene40020:CDS |
| TCGGCCACAGCAACGGGCTG+CGG | 0.436473 | 1.4:-59689701 | MS.gene40020:CDS |
| AGAGCCTGGTAGGGCTGGTA+GGG | 0.440903 | 1.4:-59689833 | MS.gene40020:CDS |
| TGCTTGACCGGCAGAAAGTA+AGG | 0.447864 | 1.4:-59690065 | MS.gene40020:CDS |
| GGATTATAGTAGGCAAGATA+TGG | 0.448758 | 1.4:-59696768 | MS.gene40020:CDS |
| ATGAGGTGGATAGGTGGATT+AGG | 0.450128 | 1.4:+59701236 | None:intergenic |
| ACTGCTCGCTTGCTTGATGC+TGG | 0.451373 | 1.4:-59699625 | MS.gene40020:CDS |
| GATTATTATTTGTAGGATGT+TGG | 0.451539 | 1.4:-59695385 | MS.gene40020:intron |
| GAAAGGAAGGCATTCTTTCA+AGG | 0.451620 | 1.4:+59699864 | None:intergenic |
| ATGAGTCGATGGCGATGGCC+TGG | 0.451976 | 1.4:-59694881 | MS.gene40020:CDS |
| TGAATTGCATATATCATCGT+TGG | 0.452485 | 1.4:+59701418 | None:intergenic |
| CTGCGCCACATGCTCATCCC+TGG | 0.456440 | 1.4:-59701276 | MS.gene40020:CDS |
| TTCAGGCAGGACAGCTTTAA+CGG | 0.457383 | 1.4:+59693151 | None:intergenic |
| ACAGAGGTGTTGGTGGTTTG+CGG | 0.458316 | 1.4:+59701367 | None:intergenic |
| GCAATCAAGTCTATGGCGTT+TGG | 0.458967 | 1.4:+59695080 | None:intergenic |
| TGAGATAATACTGGCTCTAA+AGG | 0.459212 | 1.4:-59694841 | MS.gene40020:CDS |
| AAAGAAGAACCTAATATTCG+TGG | 0.460647 | 1.4:-59696857 | MS.gene40020:CDS |
| AAGCTGGTGGAGATATTAAG+AGG | 0.462330 | 1.4:-59689780 | MS.gene40020:CDS |
| AGTCAAAGGTTTAGCTCGCT+TGG | 0.462774 | 1.4:-59693670 | MS.gene40020:CDS |
| TTCACATTTGTTGATTCATA+GGG | 0.466227 | 1.4:-59701060 | MS.gene40020:CDS |
| CAACGGGCTGCGGCAAGAAA+AGG | 0.470152 | 1.4:-59689691 | MS.gene40020:CDS |
| ACAGCAGAGCCTGGTAGGGC+TGG | 0.471151 | 1.4:-59689838 | MS.gene40020:CDS |
| TTCATAGGGATAGTGTTCAT+TGG | 0.476869 | 1.4:-59701046 | MS.gene40020:CDS |
| ACTGTTGCACTTATCATATG+TGG | 0.478961 | 1.4:+59693690 | None:intergenic |
| AGTATACCTCTCATAAAGTA+AGG | 0.479237 | 1.4:+59697982 | None:intergenic |
| AAGAATATACAAAACTTGTT+GGG | 0.480754 | 1.4:+59699891 | None:intergenic |
| CTTCATTTACAGGGTACAAT+CGG | 0.483174 | 1.4:-59695894 | MS.gene40020:intron |
| ACGTGTCTCAATCAGTTCTC+AGG | 0.484837 | 1.4:-59695734 | MS.gene40020:intron |
| GCAAAGTAGACGGAACCATA+TGG | 0.487129 | 1.4:-59690538 | MS.gene40020:CDS |
| ACTTGAAAGGTTTCTACTGC+TGG | 0.487430 | 1.4:-59699989 | MS.gene40020:CDS |
| AGCCACTTGATTTGCTTGAC+CGG | 0.490414 | 1.4:-59690077 | MS.gene40020:CDS |
| TGGTTGAGTGTTTGTTTAAG+TGG | 0.490627 | 1.4:-59693387 | MS.gene40020:CDS |
| GATAGTGACCTGTTTCCTAA+AGG | 0.491830 | 1.4:+59697915 | None:intergenic |
| TTGGATGAATCAAGGATGTC+AGG | 0.493009 | 1.4:-59699322 | MS.gene40020:CDS |
| GTTTCATATGCTCTTCAGGC+AGG | 0.494298 | 1.4:+59693138 | None:intergenic |
| TTCTCTTCCAACAGGTAAGA+AGG | 0.494757 | 1.4:-59700098 | MS.gene40020:intron |
| CGTTTGATCATCCGTGAGGA+AGG | 0.495561 | 1.4:-59689967 | MS.gene40020:CDS |
| TCGTTTGTTCCCCTTCCTCA+CGG | 0.496835 | 1.4:+59689956 | None:intergenic |
| GCAGTAGAAACCTTTCAAGT+AGG | 0.497113 | 1.4:+59699992 | None:intergenic |
| AGTCATTTGTCTGCAAGGTC+CGG | 0.497944 | 1.4:-59689886 | MS.gene40020:CDS |
| AGCAAGGGAGAAGGCTCAAA+AGG | 0.502078 | 1.4:-59697091 | MS.gene40020:intron |
| CGAAGAAGAACAGCAGAGCC+TGG | 0.503610 | 1.4:-59689847 | MS.gene40020:CDS |
| AGTGAGGAAAACTTCTGGCC+AGG | 0.505041 | 1.4:+59694863 | None:intergenic |
| AGGTTGCGACAGAAAATTTG+AGG | 0.505812 | 1.4:-59696712 | MS.gene40020:CDS |
| GCCTATGATTGAACGAGCAA+GGG | 0.506421 | 1.4:-59697106 | MS.gene40020:CDS |
| CAACACCTCTGTGCCGTCAT+CGG | 0.508265 | 1.4:-59701356 | MS.gene40020:CDS |
| GATCATGGAAGAAGTCGAAA+TGG | 0.508740 | 1.4:-59701465 | None:intergenic |
| GAAGAACAGCAGAGCCTGGT+AGG | 0.508883 | 1.4:-59689843 | MS.gene40020:CDS |
| AAATGATGATGATGGAACTA+AGG | 0.509116 | 1.4:-59699950 | MS.gene40020:CDS |
| AAACGATGGTGATGGAACTA+AGG | 0.509658 | 1.4:-59699917 | MS.gene40020:CDS |
| CCTTTACTTATTAAAATCAA+AGG | 0.510837 | 1.4:-59695004 | MS.gene40020:intron |
| ATGCATATTGGCCACTTGAT+CGG | 0.511215 | 1.4:-59689738 | MS.gene40020:CDS |
| GGGAGTGGATCAGATAACTT+TGG | 0.513350 | 1.4:-59699341 | MS.gene40020:CDS |
| ATCCCTGGACCGCATCGCAC+AGG | 0.513406 | 1.4:-59701261 | MS.gene40020:CDS |
| CAAATGATAAGGATTATAGT+AGG | 0.514770 | 1.4:-59696778 | MS.gene40020:CDS |
| GAAGGATAGTTACAAAATGA+AGG | 0.516245 | 1.4:+59696932 | None:intergenic |
| TGCCTATGATTGAACGAGCA+AGG | 0.516549 | 1.4:-59697107 | MS.gene40020:CDS |
| TTAGATCTGAGAATCTCAAA+AGG | 0.517424 | 1.4:-59690035 | MS.gene40020:CDS |
| TCTCCTCGTCTACAAGTGCA+TGG | 0.518772 | 1.4:+59693933 | None:intergenic |
| TTGTTATGTTGCCATCGAGT+TGG | 0.518795 | 1.4:-59701115 | MS.gene40020:CDS |
| AAGTTTGATTAAACAGGGAG+TGG | 0.520498 | 1.4:-59699356 | MS.gene40020:CDS |
| CTGAAATCTACAAAAGATGA+TGG | 0.520706 | 1.4:-59696638 | MS.gene40020:CDS |
| TCTGCAAGGTCCGGAACTAA+AGG | 0.523343 | 1.4:-59689877 | MS.gene40020:CDS |
| AAAGAACTCAAAAGAAAGGC+AGG | 0.523354 | 1.4:-59689585 | MS.gene40020:CDS |
| TCAAGTGGCCAATATGCATA+AGG | 0.523498 | 1.4:+59689742 | None:intergenic |
| CTTGCCGCAGCCCGTTGCTG+TGG | 0.524543 | 1.4:+59689697 | None:intergenic |
| TGGTGGAGATATTAAGAGGA+AGG | 0.524645 | 1.4:-59689776 | MS.gene40020:CDS |
| GAGCAGACCTTACTTTCTGC+CGG | 0.528773 | 1.4:+59690058 | None:intergenic |
| CGTCATCGGTGCAATGTCAC+AGG | 0.529646 | 1.4:-59701342 | MS.gene40020:CDS |
| GATTCGTCAGATAAGTGCTC+AGG | 0.531397 | 1.4:+59690108 | None:intergenic |
| GCAAATGCAAATGATGATGA+TGG | 0.531564 | 1.4:-59699958 | MS.gene40020:CDS |
| GGAATGCTTATCACGAAGTG+TGG | 0.532099 | 1.4:-59693182 | MS.gene40020:CDS |
| CTGTGACATTGCACCGATGA+CGG | 0.533423 | 1.4:+59701343 | None:intergenic |
| ATGATAAGTGCAACAGTCAA+AGG | 0.535437 | 1.4:-59693684 | MS.gene40020:CDS |
| GCTTATCACGAAGTGTGGAT+TGG | 0.537402 | 1.4:-59693177 | MS.gene40020:CDS |
| ACCTAATTTGTGAAACATAG+AGG | 0.539487 | 1.4:+59699207 | None:intergenic |
| ATATCTTTCGCATCTAATCC+AGG | 0.541115 | 1.4:+59695526 | None:intergenic |
| GACAGAAAATTTGAGGGCAC+TGG | 0.541286 | 1.4:-59696705 | MS.gene40020:CDS |
| CAGGTATTCTGCATCACTAC+CGG | 0.542320 | 1.4:+59690485 | None:intergenic |
| TGTTGGTGTCATGCAGAAGA+AGG | 0.543631 | 1.4:-59695368 | MS.gene40020:CDS |
| TTTGATCATCCGTGAGGAAG+GGG | 0.546352 | 1.4:-59689965 | MS.gene40020:CDS |
| TTCCTGTGCGATGCGGTCCA+GGG | 0.546885 | 1.4:+59701259 | None:intergenic |
| GCATCATAGTCTGAATCAGC+TGG | 0.547628 | 1.4:+59689925 | None:intergenic |
| TATTAGCATCTGCAAGTGAA+GGG | 0.550929 | 1.4:-59700023 | MS.gene40020:CDS |
| TGAGTCGTCGGCCACAGCAA+CGG | 0.551417 | 1.4:-59689708 | MS.gene40020:CDS |
| AGATAACTTTGGATGAATCA+AGG | 0.554149 | 1.4:-59699330 | MS.gene40020:CDS |
| GAATATGCTAGCAGAAAAGC+TGG | 0.555725 | 1.4:-59689796 | MS.gene40020:CDS |
| TGACGGCACAGAGGTGTTGG+TGG | 0.556509 | 1.4:+59701360 | None:intergenic |
| TTTCAAAAGCAACTACATCC+AGG | 0.559469 | 1.4:-59691023 | MS.gene40020:intron |
| CTGATAGTCATTTGTCTGCA+AGG | 0.559535 | 1.4:-59689891 | MS.gene40020:CDS |
| TTGTAGACGAGGAGAGAGGT+GGG | 0.562318 | 1.4:-59693925 | MS.gene40020:CDS |
| TCAACAAACCTTGTGTATGT+TGG | 0.563253 | 1.4:+59693109 | None:intergenic |
| CTATTAGCATCTGCAAGTGA+AGG | 0.563306 | 1.4:-59700024 | MS.gene40020:CDS |
| TCTTACTGATTCAAGACCGA+AGG | 0.565448 | 1.4:-59700985 | MS.gene40020:intron |
| GGCTGCGGCAAGAAAAGGTA+TGG | 0.566352 | 1.4:-59689686 | MS.gene40020:CDS |
| CGATGACGGCACAGAGGTGT+TGG | 0.566754 | 1.4:+59701357 | None:intergenic |
| GTCAGACGATGATGAGGTGG+AGG | 0.568488 | 1.4:-59690004 | MS.gene40020:CDS |
| GTGCTAAATCTGAAGAAACT+AGG | 0.569984 | 1.4:-59691053 | MS.gene40020:CDS |
| GAAAGGTTTCTACTGCTGGC+CGG | 0.570102 | 1.4:-59699985 | MS.gene40020:CDS |
| TATGGCGTTTGGCAGAAGAA+TGG | 0.572032 | 1.4:+59695091 | None:intergenic |
| TTAAAAGTGCGTCGATGAGG+TGG | 0.574607 | 1.4:+59701222 | None:intergenic |
| AGAATCTCAAAAGGAAGTCA+AGG | 0.575312 | 1.4:-59690026 | MS.gene40020:CDS |
| TTTGGCATCTGAACATGAAG+AGG | 0.575489 | 1.4:-59699434 | MS.gene40020:CDS |
| CTGATTCAGACTATGATGCT+AGG | 0.575801 | 1.4:-59689921 | MS.gene40020:CDS |
| CCTAGTCACAAGGCGCATAA+CGG | 0.576731 | 1.4:-59699776 | MS.gene40020:CDS |
| TCAACTGAGATTTCTGGAGA+TGG | 0.578863 | 1.4:-59699658 | MS.gene40020:CDS |
| GTGGCGCAGAAGTATGCGAC+AGG | 0.579576 | 1.4:+59701290 | None:intergenic |
| CAGCATAGTGATAATCAAGT+AGG | 0.580924 | 1.4:+59699260 | None:intergenic |
| CACCTCAAGTAGTGCTTCGG+GGG | 0.582090 | 1.4:+59699711 | None:intergenic |
| AGATCAAGGAACGGAAAGAG+AGG | 0.582196 | 1.4:-59691083 | MS.gene40020:CDS |
| TAAGCCCTACCAGCCCTACC+AGG | 0.584920 | 1.4:+59689829 | None:intergenic |
| AACTCTCCTTACTTTATGAG+AGG | 0.585087 | 1.4:-59697988 | MS.gene40020:CDS |
| GCAAATGAAAACGATGGTGA+TGG | 0.585140 | 1.4:-59699925 | MS.gene40020:CDS |
| CTTCTCCTTCAACACAGCAA+CGG | 0.586763 | 1.4:+59701169 | None:intergenic |
| GGAGAAGAGAGAGTTTCTAT+CGG | 0.587647 | 1.4:-59701153 | MS.gene40020:CDS |
| GTAGCCAAATCACAAGCAGA+AGG | 0.588275 | 1.4:-59693433 | MS.gene40020:CDS |
| GGTTGCGACAGAAAATTTGA+GGG | 0.588568 | 1.4:-59696711 | MS.gene40020:CDS |
| ACAGGATGAGTCGATGGCGA+TGG | 0.588672 | 1.4:-59694886 | MS.gene40020:intron |
| AAGAACAGCAGAGCCTGGTA+GGG | 0.589719 | 1.4:-59689842 | MS.gene40020:CDS |
| AACGATGGTGATGGAACTAA+GGG | 0.589905 | 1.4:-59699916 | MS.gene40020:CDS |
| CGTATTTAAGAAGAAAATGT+CGG | 0.592037 | 1.4:-59695832 | MS.gene40020:CDS |
| CATGCTCTTGAGTGCCTCTG+TGG | 0.592318 | 1.4:+59699399 | None:intergenic |
| GTTTGATCATCCGTGAGGAA+GGG | 0.592610 | 1.4:-59689966 | MS.gene40020:CDS |
| TCCAGCAGGACAAATGTGGA+TGG | 0.593882 | 1.4:+59693603 | None:intergenic |
| AGTGCGTCGATGAGGTGGAT+AGG | 0.595819 | 1.4:+59701227 | None:intergenic |
| GATTGAACGAGCAAGGGAGA+AGG | 0.598453 | 1.4:-59697100 | MS.gene40020:CDS |
| TCCAGAAATCTCAGTTGATG+AGG | 0.599100 | 1.4:+59699663 | None:intergenic |
| CTTGTAGACGAGGAGAGAGG+TGG | 0.601164 | 1.4:-59693926 | MS.gene40020:CDS |
| CTCCTCGTCTACAAGTGCAT+GGG | 0.601413 | 1.4:+59693934 | None:intergenic |
| AAGGATTGCAAATGCATCTG+AGG | 0.602595 | 1.4:-59693414 | MS.gene40020:CDS |
| GTCACAAGGCGCATAACGGA+TGG | 0.603827 | 1.4:-59699772 | MS.gene40020:CDS |
| GCGGTCCAGGGATGAGCATG+TGG | 0.606307 | 1.4:+59701271 | None:intergenic |
| ATCGGAAAATGATGAGTCGT+CGG | 0.608141 | 1.4:-59689720 | MS.gene40020:CDS |
| TTGTTAAAAGTGCGTCGATG+AGG | 0.611791 | 1.4:+59701219 | None:intergenic |
| GATGAAAGTTTGATTAAACA+GGG | 0.613341 | 1.4:-59699361 | MS.gene40020:CDS |
| CACTGCTGATTTGAGATGCG+TGG | 0.613580 | 1.4:+59690428 | None:intergenic |
| TGGTAGGGCTTACACTGGGA+AGG | 0.613888 | 1.4:-59689818 | MS.gene40020:CDS |
| ACACCACTCTCCCAACTCGA+TGG | 0.615760 | 1.4:+59701104 | None:intergenic |
| GAGGTGTTGGTGGTTTGCGG+CGG | 0.616455 | 1.4:+59701370 | None:intergenic |
| CTGCCGACAGGATGAGTCGA+TGG | 0.616653 | 1.4:-59694892 | MS.gene40020:intron |
| AGGGCTGGTAGGGCTTACAC+TGG | 0.618442 | 1.4:-59689823 | MS.gene40020:CDS |
| ATGCGACAGGTGAAGAAGAG+AGG | 0.618702 | 1.4:+59701303 | None:intergenic |
| TGGGTCAACCCCTAGTCACA+AGG | 0.620843 | 1.4:-59699786 | MS.gene40020:CDS |
| GTCAAGGTCAGACGATGATG+AGG | 0.621447 | 1.4:-59690010 | MS.gene40020:CDS |
| GTTATGCGCCTTGTGACTAG+GGG | 0.624081 | 1.4:+59699778 | None:intergenic |
| CATGGAAGAAGTCGAAATGG+AGG | 0.624158 | 1.4:-59701462 | MS.gene40020:CDS |
| GCGTCGATGAGGTGGATAGG+TGG | 0.624227 | 1.4:+59701230 | None:intergenic |
| AGTGTCTTTAATGATCTCAA+AGG | 0.624487 | 1.4:-59699550 | MS.gene40020:intron |
| AGGTTTCTACTGCTGGCCGG+TGG | 0.625023 | 1.4:-59699982 | MS.gene40020:CDS |
| TTTCTTCAGATTTAGCACCT+CGG | 0.638177 | 1.4:+59691058 | None:intergenic |
| GAAAGTTTATCAAGACATTG+CGG | 0.639694 | 1.4:+59700058 | None:intergenic |
| GGGCTGGTAGGGCTTACACT+GGG | 0.640050 | 1.4:-59689822 | MS.gene40020:CDS |
| AAGAAAAGGTATGGCAACTG+TGG | 0.640183 | 1.4:-59689677 | MS.gene40020:CDS |
| AAGGTCAGACGATGATGAGG+TGG | 0.640595 | 1.4:-59690007 | MS.gene40020:CDS |
| TCTCTGTCTTAACCCAACAT+CGG | 0.642234 | 1.4:-59699740 | MS.gene40020:CDS |
| TGCCCATGCACTTGTAGACG+AGG | 0.643766 | 1.4:-59693936 | MS.gene40020:CDS |
| AATGATGATGATGGAACTAA+GGG | 0.647447 | 1.4:-59699949 | MS.gene40020:CDS |
| ATTAGCATCTGCAAGTGAAG+GGG | 0.649135 | 1.4:-59700022 | MS.gene40020:CDS |
| GAGGTGGAGGTAGATTCTGA+AGG | 0.649844 | 1.4:-59689991 | MS.gene40020:CDS |
| TGCCGGTCAAGCAAATCAAG+TGG | 0.651293 | 1.4:+59690075 | None:intergenic |
| TTGAGATCATTAAAGACACT+AGG | 0.652067 | 1.4:+59699553 | None:intergenic |
| ATGCCTCTGACTTCAAGACA+TGG | 0.654569 | 1.4:+59695040 | None:intergenic |
| TTGTAAAACAGATCAAGGAA+CGG | 0.654616 | 1.4:-59691092 | MS.gene40020:intron |
| ACACCTCAAGTAGTGCTTCG+GGG | 0.654699 | 1.4:+59699710 | None:intergenic |
| GATAATACTGGCTCTAAAGG+AGG | 0.656500 | 1.4:-59694838 | MS.gene40020:intron |
| TTGCAACAAGAGCTGACCCA+AGG | 0.656828 | 1.4:+59697268 | None:intergenic |
| TTGCCATCGAGTTGGGAGAG+TGG | 0.657717 | 1.4:-59701107 | MS.gene40020:CDS |
| ACTTCTGTCCAACATACACA+AGG | 0.667461 | 1.4:-59693117 | MS.gene40020:intron |
| GAACGGAAAGAGAGGAACCG+AGG | 0.676661 | 1.4:-59691075 | MS.gene40020:CDS |
| GCACTTGTAGACGAGGAGAG+AGG | 0.679073 | 1.4:-59693929 | MS.gene40020:CDS |
| TGTAGACGAGGAGAGAGGTG+GGG | 0.680978 | 1.4:-59693924 | MS.gene40020:CDS |
| GATTAGGTTCCTGTGCGATG+CGG | 0.681268 | 1.4:+59701252 | None:intergenic |
| TTGTGAGCTAAGGTTGCTCG+CGG | 0.682338 | 1.4:-59693729 | MS.gene40020:intron |
| TATGCTAGCAGAAAAGCTGG+TGG | 0.683312 | 1.4:-59689793 | MS.gene40020:CDS |
| AGTCCATGTCTTGAAGTCAG+AGG | 0.684722 | 1.4:-59695043 | MS.gene40020:CDS |
| GGCCATACTTGCAGCCACAG+AGG | 0.690135 | 1.4:-59699413 | MS.gene40020:CDS |
| AAAGAACAAAGAGATTACCA+AGG | 0.692817 | 1.4:-59693577 | MS.gene40020:intron |
| AGTGATGCAGAATACCTGAA+CGG | 0.696328 | 1.4:-59690480 | MS.gene40020:CDS |
| AAATCTACAAAAGATGATGG+TGG | 0.698268 | 1.4:-59696635 | MS.gene40020:CDS |
| AAGGGAGCAAATGAAAACGA+TGG | 0.708803 | 1.4:-59699931 | MS.gene40020:CDS |
| GAGCCAGTATTATCTCAGTG+AGG | 0.710886 | 1.4:+59694847 | None:intergenic |
| GCAAATGCATCTGAGGAGCG+TGG | 0.728048 | 1.4:-59693407 | MS.gene40020:CDS |
| CGTTTGGCAGAAGAATGGCA+AGG | 0.732352 | 1.4:+59695096 | None:intergenic |
| TTGCACCGATGACGGCACAG+AGG | 0.748299 | 1.4:+59701351 | None:intergenic |
| AGGACGTTTGATCATCCGTG+AGG | 0.749026 | 1.4:-59689971 | MS.gene40020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 59689567 | 59701483 | 59689567 | ID=MS.gene40020 |
| chr1.4 | mRNA | 59689567 | 59701483 | 59689567 | ID=MS.gene40020.t1;Parent=MS.gene40020 |
| chr1.4 | exon | 59700986 | 59701483 | 59700986 | ID=MS.gene40020.t1.exon1;Parent=MS.gene40020.t1 |
| chr1.4 | CDS | 59700986 | 59701483 | 59700986 | ID=cds.MS.gene40020.t1;Parent=MS.gene40020.t1 |
| chr1.4 | exon | 59699551 | 59700106 | 59699551 | ID=MS.gene40020.t1.exon2;Parent=MS.gene40020.t1 |
| chr1.4 | CDS | 59699551 | 59700106 | 59699551 | ID=cds.MS.gene40020.t1;Parent=MS.gene40020.t1 |
| chr1.4 | exon | 59699209 | 59699460 | 59699209 | ID=MS.gene40020.t1.exon3;Parent=MS.gene40020.t1 |
| chr1.4 | CDS | 59699209 | 59699460 | 59699209 | ID=cds.MS.gene40020.t1;Parent=MS.gene40020.t1 |
| chr1.4 | exon | 59697924 | 59698015 | 59697924 | ID=MS.gene40020.t1.exon4;Parent=MS.gene40020.t1 |
| chr1.4 | CDS | 59697924 | 59698015 | 59697924 | ID=cds.MS.gene40020.t1;Parent=MS.gene40020.t1 |
| chr1.4 | exon | 59697092 | 59697301 | 59697092 | ID=MS.gene40020.t1.exon5;Parent=MS.gene40020.t1 |
| chr1.4 | CDS | 59697092 | 59697301 | 59697092 | ID=cds.MS.gene40020.t1;Parent=MS.gene40020.t1 |
| chr1.4 | exon | 59696625 | 59697014 | 59696625 | ID=MS.gene40020.t1.exon6;Parent=MS.gene40020.t1 |
| chr1.4 | CDS | 59696625 | 59697014 | 59696625 | ID=cds.MS.gene40020.t1;Parent=MS.gene40020.t1 |
| chr1.4 | exon | 59695735 | 59695904 | 59695735 | ID=MS.gene40020.t1.exon7;Parent=MS.gene40020.t1 |
| chr1.4 | CDS | 59695735 | 59695904 | 59695735 | ID=cds.MS.gene40020.t1;Parent=MS.gene40020.t1 |
| chr1.4 | exon | 59695489 | 59695582 | 59695489 | ID=MS.gene40020.t1.exon8;Parent=MS.gene40020.t1 |
| chr1.4 | CDS | 59695489 | 59695582 | 59695489 | ID=cds.MS.gene40020.t1;Parent=MS.gene40020.t1 |
| chr1.4 | exon | 59695339 | 59695392 | 59695339 | ID=MS.gene40020.t1.exon9;Parent=MS.gene40020.t1 |
| chr1.4 | CDS | 59695339 | 59695392 | 59695339 | ID=cds.MS.gene40020.t1;Parent=MS.gene40020.t1 |
| chr1.4 | exon | 59695005 | 59695181 | 59695005 | ID=MS.gene40020.t1.exon10;Parent=MS.gene40020.t1 |
| chr1.4 | CDS | 59695005 | 59695181 | 59695005 | ID=cds.MS.gene40020.t1;Parent=MS.gene40020.t1 |
| chr1.4 | exon | 59694839 | 59694904 | 59694839 | ID=MS.gene40020.t1.exon11;Parent=MS.gene40020.t1 |
| chr1.4 | CDS | 59694839 | 59694904 | 59694839 | ID=cds.MS.gene40020.t1;Parent=MS.gene40020.t1 |
| chr1.4 | exon | 59693892 | 59694005 | 59693892 | ID=MS.gene40020.t1.exon12;Parent=MS.gene40020.t1 |
| chr1.4 | CDS | 59693892 | 59694005 | 59693892 | ID=cds.MS.gene40020.t1;Parent=MS.gene40020.t1 |
| chr1.4 | exon | 59693578 | 59693739 | 59693578 | ID=MS.gene40020.t1.exon13;Parent=MS.gene40020.t1 |
| chr1.4 | CDS | 59693578 | 59693739 | 59693578 | ID=cds.MS.gene40020.t1;Parent=MS.gene40020.t1 |
| chr1.4 | exon | 59693354 | 59693482 | 59693354 | ID=MS.gene40020.t1.exon14;Parent=MS.gene40020.t1 |
| chr1.4 | CDS | 59693354 | 59693482 | 59693354 | ID=cds.MS.gene40020.t1;Parent=MS.gene40020.t1 |
| chr1.4 | exon | 59693118 | 59693219 | 59693118 | ID=MS.gene40020.t1.exon15;Parent=MS.gene40020.t1 |
| chr1.4 | CDS | 59693118 | 59693219 | 59693118 | ID=cds.MS.gene40020.t1;Parent=MS.gene40020.t1 |
| chr1.4 | exon | 59691024 | 59691103 | 59691024 | ID=MS.gene40020.t1.exon16;Parent=MS.gene40020.t1 |
| chr1.4 | CDS | 59691024 | 59691103 | 59691024 | ID=cds.MS.gene40020.t1;Parent=MS.gene40020.t1 |
| chr1.4 | exon | 59690417 | 59690560 | 59690417 | ID=MS.gene40020.t1.exon17;Parent=MS.gene40020.t1 |
| chr1.4 | CDS | 59690417 | 59690560 | 59690417 | ID=cds.MS.gene40020.t1;Parent=MS.gene40020.t1 |
| chr1.4 | exon | 59689567 | 59690158 | 59689567 | ID=MS.gene40020.t1.exon18;Parent=MS.gene40020.t1 |
| chr1.4 | CDS | 59689567 | 59690158 | 59689567 | ID=cds.MS.gene40020.t1;Parent=MS.gene40020.t1 |
| Gene Sequence |
| Protein sequence |
