Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023729.t1 | XP_003598266.2 | 96 | 297 | 12 | 0 | 1 | 297 | 41 | 337 | 4.50E-157 | 563.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023729.t1 | Q8N5I4 | 31.5 | 267 | 156 | 8 | 37 | 296 | 38 | 284 | 3.0e-24 | 114.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023729.t1 | G7J0B2 | 96.0 | 297 | 12 | 0 | 1 | 297 | 41 | 337 | 3.3e-157 | 563.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene061157 | MS.gene023729 | PPI |
| MS.gene012538 | MS.gene023729 | PPI |
| MS.gene006263 | MS.gene023729 | PPI |
| MS.gene05158 | MS.gene023729 | PPI |
| MS.gene95938 | MS.gene023729 | PPI |
| MS.gene24053 | MS.gene023729 | PPI |
| MS.gene42492 | MS.gene023729 | PPI |
| MS.gene048973 | MS.gene023729 | PPI |
| MS.gene061155 | MS.gene023729 | PPI |
| MS.gene061158 | MS.gene023729 | PPI |
| MS.gene023729 | MS.gene061154 | PPI |
| MS.gene49118 | MS.gene023729 | PPI |
| MS.gene34137 | MS.gene023729 | PPI |
| MS.gene20199 | MS.gene023729 | PPI |
| MS.gene34141 | MS.gene023729 | PPI |
| MS.gene023729 | MS.gene06120 | PPI |
| MS.gene006262 | MS.gene023729 | PPI |
| MS.gene037994 | MS.gene023729 | PPI |
| MS.gene006264 | MS.gene023729 | PPI |
| MS.gene023729 | MS.gene49117 | PPI |
| MS.gene49120 | MS.gene023729 | PPI |
| MS.gene006265 | MS.gene023729 | PPI |
| MS.gene023729 | MS.gene55839 | PPI |
| MS.gene058995 | MS.gene023729 | PPI |
| MS.gene035607 | MS.gene023729 | PPI |
| MS.gene57782 | MS.gene023729 | PPI |
| MS.gene49121 | MS.gene023729 | PPI |
| MS.gene40431 | MS.gene023729 | PPI |
| MS.gene061893 | MS.gene023729 | PPI |
| MS.gene34138 | MS.gene023729 | PPI |
| MS.gene34140 | MS.gene023729 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023729.t1 | MTR_3g009190 | 95.960 | 297 | 12 | 0 | 1 | 297 | 23 | 319 | 0.0 | 576 |
| MS.gene023729.t1 | MTR_3g009190 | 95.960 | 297 | 12 | 0 | 1 | 297 | 41 | 337 | 0.0 | 575 |
| MS.gene023729.t1 | MTR_6g453040 | 94.276 | 297 | 17 | 0 | 1 | 297 | 1 | 297 | 0.0 | 569 |
| MS.gene023729.t1 | MTR_3g091070 | 88.215 | 297 | 17 | 1 | 1 | 297 | 1 | 279 | 0.0 | 528 |
| MS.gene023729.t1 | MTR_3g009190 | 94.141 | 256 | 15 | 0 | 42 | 297 | 63 | 318 | 5.69e-172 | 481 |
| MS.gene023729.t1 | MTR_6g453040 | 89.354 | 263 | 24 | 1 | 1 | 263 | 23 | 281 | 1.94e-168 | 469 |
| MS.gene023729.t1 | MTR_6g453040 | 94.545 | 220 | 12 | 0 | 1 | 220 | 23 | 242 | 1.90e-149 | 419 |
| MS.gene023729.t1 | MTR_3g009200 | 78.453 | 181 | 27 | 3 | 80 | 257 | 2 | 173 | 4.43e-95 | 280 |
| MS.gene023729.t1 | MTR_6g453030 | 88.312 | 77 | 9 | 0 | 70 | 146 | 1 | 77 | 7.46e-43 | 142 |
| MS.gene023729.t1 | MTR_8g099995 | 30.802 | 237 | 149 | 4 | 44 | 276 | 39 | 264 | 5.11e-24 | 100 |
| MS.gene023729.t1 | MTR_3g077410 | 29.630 | 270 | 171 | 8 | 31 | 296 | 28 | 282 | 9.25e-24 | 99.4 |
| MS.gene023729.t1 | MTR_4g105310 | 29.098 | 244 | 156 | 5 | 37 | 276 | 45 | 275 | 1.73e-22 | 96.3 |
| MS.gene023729.t1 | MTR_4g105310 | 29.956 | 227 | 142 | 5 | 37 | 259 | 45 | 258 | 8.44e-22 | 92.8 |
| MS.gene023729.t1 | MTR_7g099850 | 29.864 | 221 | 139 | 5 | 43 | 259 | 37 | 245 | 8.26e-20 | 88.6 |
| MS.gene023729.t1 | MTR_8g098415 | 30.924 | 249 | 152 | 6 | 43 | 284 | 32 | 267 | 1.09e-18 | 85.1 |
| MS.gene023729.t1 | MTR_8g098415 | 30.952 | 252 | 148 | 7 | 43 | 284 | 32 | 267 | 1.17e-18 | 85.1 |
| MS.gene023729.t1 | MTR_6g041980 | 25.571 | 219 | 148 | 6 | 11 | 223 | 38 | 247 | 4.71e-18 | 82.4 |
| MS.gene023729.t1 | MTR_1g068970 | 28.326 | 233 | 150 | 5 | 43 | 271 | 37 | 256 | 6.84e-18 | 83.2 |
| MS.gene023729.t1 | MTR_1g100305 | 29.804 | 255 | 147 | 9 | 43 | 284 | 32 | 267 | 2.61e-17 | 81.3 |
| MS.gene023729.t1 | MTR_6g041980 | 28.000 | 175 | 115 | 4 | 11 | 183 | 38 | 203 | 3.01e-17 | 81.3 |
| MS.gene023729.t1 | MTR_1g100395 | 28.112 | 249 | 159 | 6 | 43 | 284 | 32 | 267 | 6.58e-17 | 80.1 |
| MS.gene023729.t1 | MTR_1g100315 | 29.333 | 225 | 142 | 5 | 43 | 263 | 32 | 243 | 3.73e-16 | 77.8 |
| MS.gene023729.t1 | MTR_1g100335 | 29.596 | 223 | 140 | 5 | 43 | 261 | 32 | 241 | 9.99e-16 | 75.9 |
| MS.gene023729.t1 | MTR_1g100335 | 29.596 | 223 | 140 | 5 | 43 | 261 | 32 | 241 | 1.10e-15 | 75.9 |
| MS.gene023729.t1 | MTR_1g100335 | 27.711 | 249 | 160 | 6 | 43 | 284 | 32 | 267 | 1.45e-15 | 76.3 |
| MS.gene023729.t1 | MTR_6g053550 | 30.380 | 237 | 131 | 9 | 42 | 265 | 39 | 254 | 2.83e-15 | 75.5 |
| MS.gene023729.t1 | MTR_6g081020 | 27.667 | 300 | 178 | 12 | 14 | 298 | 34 | 309 | 4.90e-15 | 75.5 |
| MS.gene023729.t1 | MTR_8g098415 | 31.282 | 195 | 119 | 4 | 43 | 233 | 32 | 215 | 6.38e-14 | 70.1 |
| MS.gene023729.t1 | MTR_8g098415 | 29.851 | 201 | 121 | 6 | 91 | 284 | 23 | 210 | 1.04e-13 | 70.1 |
| MS.gene023729.t1 | MTR_6g053600 | 28.854 | 253 | 141 | 10 | 43 | 277 | 26 | 257 | 1.67e-13 | 70.1 |
| MS.gene023729.t1 | MTR_1g068970 | 27.895 | 190 | 120 | 6 | 88 | 273 | 15 | 191 | 6.75e-12 | 65.1 |
| MS.gene023729.t1 | MTR_3g098470 | 27.632 | 152 | 101 | 4 | 37 | 187 | 31 | 174 | 3.01e-11 | 63.5 |
| MS.gene023729.t1 | MTR_2g079710 | 29.108 | 213 | 125 | 6 | 40 | 233 | 86 | 291 | 4.31e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene023729.t1 | AT5G04070 | 57.333 | 300 | 128 | 0 | 1 | 300 | 19 | 318 | 1.21e-108 | 320 |
| MS.gene023729.t1 | AT5G15940 | 55.667 | 300 | 132 | 1 | 1 | 299 | 20 | 319 | 2.88e-104 | 308 |
| MS.gene023729.t1 | AT5G15940 | 55.705 | 298 | 131 | 1 | 1 | 297 | 20 | 317 | 2.73e-102 | 304 |
| MS.gene023729.t1 | AT5G15940 | 55.705 | 298 | 131 | 1 | 1 | 297 | 20 | 317 | 2.73e-102 | 304 |
| MS.gene023729.t1 | AT5G15940 | 55.705 | 298 | 131 | 1 | 1 | 297 | 19 | 316 | 3.18e-102 | 304 |
| MS.gene023729.t1 | AT2G37540 | 33.333 | 228 | 135 | 6 | 43 | 266 | 36 | 250 | 4.31e-24 | 99.0 |
| MS.gene023729.t1 | AT2G37540 | 33.484 | 221 | 130 | 6 | 43 | 259 | 36 | 243 | 1.79e-23 | 98.6 |
| MS.gene023729.t1 | AT4G23430 | 31.600 | 250 | 150 | 6 | 43 | 284 | 32 | 268 | 2.91e-22 | 95.1 |
| MS.gene023729.t1 | AT4G24050 | 30.417 | 240 | 148 | 6 | 43 | 276 | 37 | 263 | 2.94e-22 | 94.4 |
| MS.gene023729.t1 | AT4G24050 | 30.544 | 239 | 147 | 6 | 44 | 276 | 38 | 263 | 6.76e-22 | 94.4 |
| MS.gene023729.t1 | AT4G23430 | 31.200 | 250 | 149 | 6 | 43 | 284 | 32 | 266 | 2.71e-21 | 92.4 |
| MS.gene023729.t1 | AT1G64590 | 30.252 | 238 | 149 | 5 | 44 | 276 | 38 | 263 | 1.27e-20 | 90.9 |
| MS.gene023729.t1 | AT4G09750 | 28.846 | 260 | 149 | 9 | 43 | 296 | 46 | 275 | 4.02e-20 | 89.4 |
| MS.gene023729.t1 | AT4G23420 | 30.942 | 223 | 129 | 7 | 43 | 257 | 32 | 237 | 6.24e-20 | 87.8 |
| MS.gene023729.t1 | AT5G50130 | 28.959 | 221 | 141 | 5 | 43 | 259 | 39 | 247 | 8.55e-20 | 87.4 |
| MS.gene023729.t1 | AT5G50130 | 27.848 | 237 | 155 | 5 | 44 | 276 | 40 | 264 | 1.26e-19 | 87.8 |
| MS.gene023729.t1 | AT5G50130 | 27.848 | 237 | 155 | 5 | 44 | 276 | 40 | 264 | 1.26e-19 | 88.2 |
| MS.gene023729.t1 | AT4G23420 | 30.942 | 223 | 129 | 7 | 43 | 257 | 32 | 237 | 1.32e-19 | 87.0 |
| MS.gene023729.t1 | AT5G50130 | 28.829 | 222 | 139 | 6 | 43 | 259 | 39 | 246 | 1.75e-19 | 86.3 |
| MS.gene023729.t1 | AT4G23420 | 30.942 | 223 | 129 | 7 | 43 | 257 | 32 | 237 | 2.09e-19 | 87.4 |
| MS.gene023729.t1 | AT4G23420 | 30.942 | 223 | 129 | 7 | 43 | 257 | 32 | 237 | 2.09e-19 | 87.4 |
| MS.gene023729.t1 | AT4G23420 | 30.942 | 223 | 129 | 7 | 43 | 257 | 49 | 254 | 2.09e-19 | 87.4 |
| MS.gene023729.t1 | AT5G50130 | 27.426 | 237 | 155 | 5 | 44 | 276 | 40 | 263 | 2.85e-19 | 87.0 |
| MS.gene023729.t1 | AT5G50130 | 27.542 | 236 | 155 | 5 | 45 | 276 | 8 | 231 | 6.27e-19 | 85.9 |
| MS.gene023729.t1 | AT5G50130 | 28.767 | 219 | 140 | 5 | 45 | 259 | 8 | 214 | 6.48e-19 | 85.5 |
| MS.gene023729.t1 | AT5G50130 | 27.426 | 237 | 153 | 6 | 45 | 276 | 8 | 230 | 1.11e-18 | 85.1 |
| MS.gene023729.t1 | AT5G50130 | 28.311 | 219 | 140 | 5 | 45 | 259 | 8 | 213 | 1.64e-18 | 84.3 |
| MS.gene023729.t1 | AT5G02540 | 31.858 | 226 | 137 | 7 | 50 | 271 | 43 | 255 | 1.29e-17 | 82.4 |
| MS.gene023729.t1 | AT4G11410 | 29.864 | 221 | 138 | 5 | 43 | 259 | 32 | 239 | 3.72e-16 | 77.4 |
| MS.gene023729.t1 | AT4G23430 | 28.862 | 246 | 152 | 6 | 43 | 284 | 32 | 258 | 1.13e-15 | 76.6 |
| MS.gene023729.t1 | AT4G11410 | 29.730 | 222 | 139 | 5 | 42 | 259 | 31 | 239 | 1.40e-15 | 76.3 |
| MS.gene023729.t1 | AT5G53090 | 30.859 | 256 | 151 | 11 | 16 | 262 | 31 | 269 | 1.75e-15 | 76.6 |
| MS.gene023729.t1 | AT4G27760 | 30.469 | 256 | 150 | 12 | 16 | 261 | 32 | 269 | 4.58e-15 | 75.5 |
| MS.gene023729.t1 | AT4G23430 | 28.455 | 246 | 151 | 6 | 43 | 284 | 32 | 256 | 9.20e-15 | 73.9 |
| MS.gene023729.t1 | AT5G61830 | 26.613 | 248 | 136 | 6 | 42 | 255 | 38 | 273 | 2.12e-14 | 72.8 |
| MS.gene023729.t1 | AT5G61830 | 26.613 | 248 | 136 | 6 | 42 | 255 | 38 | 273 | 2.12e-14 | 72.8 |
| MS.gene023729.t1 | AT5G54190 | 27.230 | 213 | 129 | 6 | 40 | 233 | 92 | 297 | 3.88e-14 | 72.8 |
| MS.gene023729.t1 | AT5G53100 | 31.466 | 232 | 136 | 8 | 39 | 262 | 43 | 259 | 2.10e-13 | 70.5 |
| MS.gene023729.t1 | AT1G03630 | 28.774 | 212 | 126 | 6 | 40 | 233 | 87 | 291 | 9.07e-12 | 65.9 |
| MS.gene023729.t1 | AT1G03630 | 28.774 | 212 | 126 | 6 | 40 | 233 | 89 | 293 | 9.55e-12 | 65.5 |
| MS.gene023729.t1 | AT4G27440 | 27.700 | 213 | 128 | 6 | 40 | 233 | 88 | 293 | 2.37e-11 | 64.3 |
| MS.gene023729.t1 | AT4G27440 | 27.700 | 213 | 128 | 6 | 40 | 233 | 88 | 293 | 2.37e-11 | 64.3 |
Find 0 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAACTTTATTATATTTC+TGG | + | 42790:462897-462916 | MS.gene023729:intron | 10.0% |
| !! | AACATGAATAAAAATTAAAC+GGG | + | 42790:462821-462840 | MS.gene023729:intron | 15.0% |
| !! | GAACATGAATAAAAATTAAA+CGG | + | 42790:462820-462839 | MS.gene023729:intron | 15.0% |
| !!! | AAAGAAAATAAAAGTTGATT+TGG | - | 42790:462236-462255 | None:intergenic | 15.0% |
| !!! | ATAAAAGGATTTAAAACATA+AGG | - | 42790:460401-460420 | None:intergenic | 15.0% |
| !!! | GAAAATCAATAAGTATTTTA+TGG | - | 42790:461899-461918 | None:intergenic | 15.0% |
| !! | AATAATGTTGTAGAAAATAG+TGG | - | 42790:460435-460454 | None:intergenic | 20.0% |
| !! | ATAAATAAATTATGCAGATC+AGG | - | 42790:461408-461427 | None:intergenic | 20.0% |
| !! | ATCACAGTAATACTTTAATT+AGG | - | 42790:462324-462343 | None:intergenic | 20.0% |
| !! | CAAAATTCTATCTTTATCAT+TGG | + | 42790:461307-461326 | MS.gene023729:intron | 20.0% |
| !! | CAAATACTAATAAAAAATGC+CGG | + | 42790:461198-461217 | MS.gene023729:CDS | 20.0% |
| !! | CAGAAAATGAATATTAAAAG+TGG | - | 42790:462944-462963 | None:intergenic | 20.0% |
| !! | CATAATTTATTTATGCTTTG+GGG | + | 42790:461414-461433 | MS.gene023729:intron | 20.0% |
| !! | GCATAATTTATTTATGCTTT+GGG | + | 42790:461413-461432 | MS.gene023729:intron | 20.0% |
| !! | TGCATAATTTATTTATGCTT+TGG | + | 42790:461412-461431 | MS.gene023729:intron | 20.0% |
| !!! | CATTTTTTCAAATAGTCTTT+TGG | - | 42790:460866-460885 | None:intergenic | 20.0% |
| !!! | TACAATTGATGCATTTTTAT+GGG | + | 42790:461559-461578 | MS.gene023729:intron | 20.0% |
| !!! | TAGGTTATTTGTTTTTGTAT+AGG | + | 42790:462295-462314 | MS.gene023729:intron | 20.0% |
| !!! | TCTATTTTGTCAAATTTCTA+TGG | + | 42790:460719-460738 | MS.gene023729:intron | 20.0% |
| !!! | TGATGTTACATTAACAATTT+TGG | - | 42790:461782-461801 | None:intergenic | 20.0% |
| !!! | TTGATCAATTTTATTGTGAA+TGG | - | 42790:460495-460514 | None:intergenic | 20.0% |
| !!! | TTGTGTGTTTTTATAACTAT+AGG | + | 42790:462276-462295 | MS.gene023729:intron | 20.0% |
| ! | AAAGAAAAAAGAACTTACAC+CGG | - | 42790:460204-460223 | None:intergenic | 25.0% |
| ! | AATAATGAAATTTGCAAGAG+AGG | - | 42790:460231-460250 | None:intergenic | 25.0% |
| ! | ATAATGAAATTTGCAAGAGA+GGG | - | 42790:460230-460249 | None:intergenic | 25.0% |
| ! | ATGATCAGCACAAATTATAT+CGG | + | 42790:461700-461719 | MS.gene023729:CDS | 25.0% |
| ! | TAGACCATAACAAAGATTAA+AGG | + | 42790:461054-461073 | MS.gene023729:intron | 25.0% |
| ! | TTATAAAAACACACAACACT+TGG | - | 42790:462272-462291 | None:intergenic | 25.0% |
| ! | TTCTCATTACCAATTGTTTA+AGG | + | 42790:460097-460116 | MS.gene023729:CDS | 25.0% |
| !! | AAAGCTTAAATCATTTTGCA+AGG | - | 42790:462873-462892 | None:intergenic | 25.0% |
| !! | AATAATTTGTAGGAAAGTCA+TGG | - | 42790:462380-462399 | None:intergenic | 25.0% |
| !! | GTACAATTGATGCATTTTTA+TGG | + | 42790:461558-461577 | MS.gene023729:intron | 25.0% |
| !!! | AGTTCTGAACTTTCAATTAA+AGG | + | 42790:462516-462535 | MS.gene023729:intron | 25.0% |
| !!! | ATATTTCTGGTTAATAACCA+TGG | + | 42790:462910-462929 | MS.gene023729:intron | 25.0% |
| !!! | CTATCATTTTTTTTCTGTGT+AGG | + | 42790:460263-460282 | MS.gene023729:intron | 25.0% |
| !!! | CTTATTGATTTTCTCTACAA+TGG | + | 42790:461906-461925 | MS.gene023729:intron | 25.0% |
| !!! | TTAAATGTCAACTTTTGAGA+TGG | + | 42790:461459-461478 | MS.gene023729:intron | 25.0% |
| !!! | TTAACAATTTTGGAAGATAC+AGG | - | 42790:461772-461791 | None:intergenic | 25.0% |
| AAAAGCTTGGTCATAACAAA+TGG | - | 42790:461727-461746 | None:intergenic | 30.0% | |
| AAACCTAAAGTCACTCTTAT+TGG | - | 42790:462771-462790 | None:intergenic | 30.0% | |
| AAAGATTAAAGGTTGGAATG+AGG | + | 42790:461065-461084 | MS.gene023729:CDS | 30.0% | |
| AAAGCTTGGTCATAACAAAT+GGG | - | 42790:461726-461745 | None:intergenic | 30.0% | |
| AACAAAAATACGTGCTAGTT+AGG | - | 42790:462124-462143 | None:intergenic | 30.0% | |
| AAGAAGTGGTAATAAAAGCT+TGG | - | 42790:461740-461759 | None:intergenic | 30.0% | |
| AGAGTGAATCCTTAAACAAT+TGG | - | 42790:460109-460128 | None:intergenic | 30.0% | |
| ATGAGAAAATGCAACAGAAA+AGG | - | 42790:460084-460103 | None:intergenic | 30.0% | |
| ATGGTAATAAGTAAGTGAGT+TGG | - | 42790:463225-463244 | None:intergenic | 30.0% | |
| ATTAAGATCTTCACAATGCA+TGG | - | 42790:461013-461032 | None:intergenic | 30.0% | |
| ATTGTATCCTTAACAAGAGA+GGG | - | 42790:462560-462579 | None:intergenic | 30.0% | |
| CAGAACTATATGAGAATTAC+TGG | - | 42790:462503-462522 | None:intergenic | 30.0% | |
| CCAACCTTTAATCTTTGTTA+TGG | - | 42790:461061-461080 | None:intergenic | 30.0% | |
| CCATAACAAAGATTAAAGGT+TGG | + | 42790:461058-461077 | MS.gene023729:CDS | 30.0% | |
| TAATTAGCCAATGAGTTTGA+TGG | + | 42790:462655-462674 | MS.gene023729:intron | 30.0% | |
| TGATGTTTCAAAATGACTGA+AGG | + | 42790:463190-463209 | MS.gene023729:intron | 30.0% | |
| TGGTGTATGTGTCTATATAT+TGG | + | 42790:460784-460803 | MS.gene023729:intron | 30.0% | |
| TGTTATGGTCTATCAAACAA+CGG | - | 42790:461046-461065 | None:intergenic | 30.0% | |
| TTCTTCAGTTACTAATATGC+AGG | + | 42790:461959-461978 | MS.gene023729:intron | 30.0% | |
| ! | ACCTTTTATTGTGTTATGCA+AGG | - | 42790:461353-461372 | None:intergenic | 30.0% |
| ! | AGAGCTTTATATAATCACAG+TGG | - | 42790:460527-460546 | None:intergenic | 30.0% |
| ! | ATCAAACTCATTGGCTAATT+AGG | - | 42790:462656-462675 | None:intergenic | 30.0% |
| ! | CATTTTTCCATCAAACTCAT+TGG | - | 42790:462665-462684 | None:intergenic | 30.0% |
| ! | CTATATGAGAATTACTGGTT+CGG | - | 42790:462498-462517 | None:intergenic | 30.0% |
| ! | CTTGGGATACAATAATTTGT+AGG | - | 42790:462390-462409 | None:intergenic | 30.0% |
| ! | GAAGGATATGTTGTTGTTAT+TGG | + | 42790:460330-460349 | MS.gene023729:CDS | 30.0% |
| ! | GTGGATTGTTAGCATATAAA+AGG | - | 42790:460416-460435 | None:intergenic | 30.0% |
| ! | TTTTGGACACACTCTATTAT+TGG | - | 42790:460849-460868 | None:intergenic | 30.0% |
| !! | TTATTTATGCTTTGGGGATA+TGG | + | 42790:461420-461439 | MS.gene023729:intron | 30.0% |
| AAAACTCACTTGTGCATTTG+TGG | + | 42790:462714-462733 | MS.gene023729:intron | 35.0% | |
| AAATGATTATCCTACCAGCT+CGG | - | 42790:461813-461832 | None:intergenic | 35.0% | |
| AACAACAACATATCCTTCCT+TGG | - | 42790:460328-460347 | None:intergenic | 35.0% | |
| AACCACTAACACAGAAGATT+AGG | - | 42790:461285-461304 | None:intergenic | 35.0% | |
| AATTAGGTAGTTGTAGCTTC+AGG | - | 42790:462640-462659 | None:intergenic | 35.0% | |
| ACTTTCTATTAGTGCATGTC+TGG | - | 42790:460607-460626 | None:intergenic | 35.0% | |
| AGACATGCACTAATAGAAAG+TGG | + | 42790:460606-460625 | MS.gene023729:intron | 35.0% | |
| AGTTGTGCAGAAAAGAACTT+GGG | - | 42790:462407-462426 | None:intergenic | 35.0% | |
| ATACGTGCTAGTTAGGAATT+AGG | - | 42790:462117-462136 | None:intergenic | 35.0% | |
| ATGTTTGTTTGTACAACTCC+AGG | - | 42790:462991-463010 | None:intergenic | 35.0% | |
| ATTAGGTAGTTGTAGCTTCA+GGG | - | 42790:462639-462658 | None:intergenic | 35.0% | |
| ATTGACATGATCACGAGATT+TGG | - | 42790:460572-460591 | None:intergenic | 35.0% | |
| CACAACACTTGGAAAAAAGA+TGG | - | 42790:462261-462280 | None:intergenic | 35.0% | |
| CATTGTATCCTTAACAAGAG+AGG | - | 42790:462561-462580 | None:intergenic | 35.0% | |
| GAGAGAGTGGAAAATATAGT+TGG | - | 42790:461675-461694 | None:intergenic | 35.0% | |
| GCCTTGCATAACACAATAAA+AGG | + | 42790:461349-461368 | MS.gene023729:intron | 35.0% | |
| GCTTTATATAATCACAGTGG+TGG | - | 42790:460524-460543 | None:intergenic | 35.0% | |
| TAAAAGTGGAGTAGAAACCA+TGG | - | 42790:462930-462949 | None:intergenic | 35.0% | |
| TACGTGCTAGTTAGGAATTA+GGG | - | 42790:462116-462135 | None:intergenic | 35.0% | |
| TACTCATAGATCTGAGCATA+TGG | - | 42790:462035-462054 | None:intergenic | 35.0% | |
| TATCAGTTCCATAAAGTTCC+TGG | - | 42790:461508-461527 | None:intergenic | 35.0% | |
| TTCCTAATCTTCTGTGTTAG+TGG | + | 42790:461280-461299 | MS.gene023729:intron | 35.0% | |
| TTGATGAGGGAACTGTATTT+GGG | + | 42790:461982-462001 | MS.gene023729:CDS | 35.0% | |
| TTGTATCCTTAACAAGAGAG+GGG | - | 42790:462559-462578 | None:intergenic | 35.0% | |
| ! | TATATTTTCCACTCTCTCTC+AGG | + | 42790:461677-461696 | MS.gene023729:intron | 35.0% |
| ! | TTCTTTTCTGCACAACTCAT+TGG | + | 42790:462410-462429 | MS.gene023729:intron | 35.0% |
| !! | ACTAATATGCAGGTTGATGA+GGG | + | 42790:461969-461988 | MS.gene023729:CDS | 35.0% |
| !! | ACTGCTAAAAAAGTACTCAC+AGG | - | 42790:463132-463151 | None:intergenic | 35.0% |
| !! | GGTGCTATTTATGCAACAAT+AGG | - | 42790:462750-462769 | None:intergenic | 35.0% |
| !! | TACTAATATGCAGGTTGATG+AGG | + | 42790:461968-461987 | MS.gene023729:CDS | 35.0% |
| ACAAAATCATATCCCACCCA+AGG | + | 42790:460135-460154 | MS.gene023729:CDS | 40.0% | |
| AGAGCTTGAGAAGGTTCTAT+AGG | - | 42790:461938-461957 | None:intergenic | 40.0% | |
| AGTAAGAGCGGCATCAATAA+TGG | - | 42790:463106-463125 | None:intergenic | 40.0% | |
| ATCAGAGCAATTGTTGTCAG+AGG | + | 42790:460946-460965 | MS.gene023729:CDS | 40.0% | |
| ATTTGCATGACATGATCACC+AGG | + | 42790:461487-461506 | MS.gene023729:intron | 40.0% | |
| CATGATCACCAGGAACTTTA+TGG | + | 42790:461497-461516 | MS.gene023729:intron | 40.0% | |
| CGTGGTCTAGGTTATTTAGT+GGG | + | 42790:460816-460835 | MS.gene023729:intron | 40.0% | |
| CTGAAGAAAAGAGCTTGAGA+AGG | - | 42790:461947-461966 | None:intergenic | 40.0% | |
| GACAGTAAAACCCAAAGAGT+AGG | - | 42790:461874-461893 | None:intergenic | 40.0% | |
| GAGTTGTGCAGAAAAGAACT+TGG | - | 42790:462408-462427 | None:intergenic | 40.0% | |
| GCACCAATAAGAGTGACTTT+AGG | + | 42790:462765-462784 | MS.gene023729:intron | 40.0% | |
| GCATTCTTACCTAAGATTCC+CGG | + | 42790:460901-460920 | MS.gene023729:intron | 40.0% | |
| GGCTTATTAGGAAAAGTGGA+AGG | - | 42790:460167-460186 | None:intergenic | 40.0% | |
| GTCTAGTGATCCTACTCTTT+GGG | + | 42790:461861-461880 | MS.gene023729:intron | 40.0% | |
| TAAAGTTCAGTACTTCCCTG+CGG | + | 42790:461139-461158 | MS.gene023729:CDS | 40.0% | |
| TAGTCACAACTCACAAGTGT+CGG | - | 42790:460686-460705 | None:intergenic | 40.0% | |
| TCTCATGAGATTTACCCATC+TGG | - | 42790:462194-462213 | None:intergenic | 40.0% | |
| TGTCTAGTGATCCTACTCTT+TGG | + | 42790:461860-461879 | MS.gene023729:intron | 40.0% | |
| TTAGGTAGTTGTAGCTTCAG+GGG | - | 42790:462638-462657 | None:intergenic | 40.0% | |
| TTAGTGCATGTCTGGATTGA+TGG | - | 42790:460599-460618 | None:intergenic | 40.0% | |
| TTGTACCGAGCAATGCAAAT+CGG | - | 42790:461181-461200 | None:intergenic | 40.0% | |
| TTGTGTTGTGTCTGGTGTAT+TGG | + | 42790:460764-460783 | MS.gene023729:intron | 40.0% | |
| TTTATGGGAGTCTTTGATGC+AGG | + | 42790:461574-461593 | MS.gene023729:intron | 40.0% | |
| TTTCTATGGTGTCTATGCGT+CGG | + | 42790:460733-460752 | MS.gene023729:intron | 40.0% | |
| ! | AACGGGCTTATTAGGAAAAG+TGG | - | 42790:460171-460190 | None:intergenic | 40.0% |
| ! | ATATATTGGTGCTTCTTGCG+TGG | + | 42790:460798-460817 | MS.gene023729:intron | 40.0% |
| ! | GTTGATGAGGGAACTGTATT+TGG | + | 42790:461981-462000 | MS.gene023729:CDS | 40.0% |
| ! | TAATTGACTCAACCGACGAA+AGG | - | 42790:461119-461138 | None:intergenic | 40.0% |
| ! | TTTTCTGTGTAGGCAACATC+TGG | + | 42790:460273-460292 | MS.gene023729:intron | 40.0% |
| !! | GCTAAAAAAGTACTCACAGG+CGG | - | 42790:463129-463148 | None:intergenic | 40.0% |
| !!! | AACTCATTGGCTCTTGCTTT+TGG | + | 42790:462423-462442 | MS.gene023729:intron | 40.0% |
| AAAGTGGAAGGTGAAGACCT+TGG | - | 42790:460155-460174 | None:intergenic | 45.0% | |
| AAGTGGAAGGTGAAGACCTT+GGG | - | 42790:460154-460173 | None:intergenic | 45.0% | |
| ACAGGACTGCTTTCAAGAAG+TGG | - | 42790:461754-461773 | None:intergenic | 45.0% | |
| ACATCATTTACTCACCGAGC+TGG | + | 42790:461796-461815 | MS.gene023729:CDS | 45.0% | |
| AGGCGATGTTGCAAGTATTC+CGG | - | 42790:461220-461239 | None:intergenic | 45.0% | |
| AGTGCGTGTTTGACATGTGT+TGG | + | 42790:460657-460676 | MS.gene023729:intron | 45.0% | |
| CAATCCATACCGGGAATCTT+AGG | - | 42790:460913-460932 | None:intergenic | 45.0% | |
| CTATTGGAATCCTCTGAGTG+CGG | + | 42790:463072-463091 | MS.gene023729:CDS | 45.0% | |
| CTCACTTGTGCATTTGTGGT+TGG | + | 42790:462718-462737 | MS.gene023729:intron | 45.0% | |
| CTTACCTAAGATTCCCGGTA+TGG | + | 42790:460906-460925 | MS.gene023729:intron | 45.0% | |
| GCGTGGTCTAGGTTATTTAG+TGG | + | 42790:460815-460834 | MS.gene023729:intron | 45.0% | |
| TACTGCATGCAAGCTTTCCA+AGG | + | 42790:460308-460327 | MS.gene023729:CDS | 45.0% | |
| TATGCACCCCTCTCTTGTTA+AGG | + | 42790:462550-462569 | MS.gene023729:intron | 45.0% | |
| TATTGGAATCCTCTGAGTGC+GGG | + | 42790:463073-463092 | MS.gene023729:CDS | 45.0% | |
| TGTCAGTGTTGTGTTGTGTC+TGG | + | 42790:460756-460775 | MS.gene023729:intron | 45.0% | |
| ! | AGCGAGTGTTGCAATTCGAA+AGG | + | 42790:462792-462811 | MS.gene023729:intron | 45.0% |
| ! | ATGACGCAAACGGGCTTATT+AGG | - | 42790:460179-460198 | None:intergenic | 45.0% |
| ! | GGAAGCATGCACTTAGAAAG+TGG | - | 42790:460474-460493 | None:intergenic | 45.0% |
| ! | GGATTCCGATTTGCATTGCT+CGG | + | 42790:461173-461192 | MS.gene023729:CDS | 45.0% |
| !! | AGCCTGAAAAGCTTTGAGGT+GGG | - | 42790:461094-461113 | None:intergenic | 45.0% |
| !! | TTTTCAGGCTGACCTTTCGT+CGG | + | 42790:461104-461123 | MS.gene023729:CDS | 45.0% |
| AAGTTCCAGCAAGCCTGTCT+TGG | + | 42790:463019-463038 | MS.gene023729:CDS | 50.0% | |
| AGTTCCAGCAAGCCTGTCTT+GGG | + | 42790:463020-463039 | MS.gene023729:CDS | 50.0% | |
| ATCGCCTAGAGTCACAGTTG+AGG | + | 42790:461233-461252 | MS.gene023729:CDS | 50.0% | |
| ATGCAAGGCAAGCATGAGCA+TGG | - | 42790:461338-461357 | None:intergenic | 50.0% | |
| CAAAGAATGCCACCCAAGAC+AGG | - | 42790:463035-463054 | None:intergenic | 50.0% | |
| CATTTACTCACCGAGCTGGT+AGG | + | 42790:461800-461819 | MS.gene023729:intron | 50.0% | |
| CCACTGCATCAATCCATACC+GGG | - | 42790:460922-460941 | None:intergenic | 50.0% | |
| CCCACTGCATCAATCCATAC+CGG | - | 42790:460923-460942 | None:intergenic | 50.0% | |
| CGCACTCAGAGGATTCCAAT+AGG | - | 42790:463074-463093 | None:intergenic | 50.0% | |
| CTGATCATCCTGAGAGAGAG+TGG | - | 42790:461688-461707 | None:intergenic | 50.0% | |
| GCATGCAAGCTTTCCAAGGA+AGG | + | 42790:460312-460331 | MS.gene023729:CDS | 50.0% | |
| GGCGGAGTACACTCTTTGTT+GGG | - | 42790:462608-462627 | None:intergenic | 50.0% | |
| GGTCAGCCTGAAAAGCTTTG+AGG | - | 42790:461098-461117 | None:intergenic | 50.0% | |
| TAGCCCTCAACTGTGACTCT+AGG | - | 42790:461240-461259 | None:intergenic | 50.0% | |
| TCGCCTAGAGTCACAGTTGA+GGG | + | 42790:461234-461253 | MS.gene023729:CDS | 50.0% | |
| TGCATCAGTGTTGCAGATCC+TGG | + | 42790:462970-462989 | MS.gene023729:intron | 50.0% | |
| TGTGTAGGCAACATCTGGCT+TGG | + | 42790:460278-460297 | MS.gene023729:intron | 50.0% | |
| ! | ACTGAAGCGTCTACGCCTAT+TGG | + | 42790:463056-463075 | MS.gene023729:CDS | 50.0% |
| ! | CCGGTATGGATTGATGCAGT+GGG | + | 42790:460920-460939 | MS.gene023729:intron | 50.0% |
| ! | GTGTAGGCAACATCTGGCTT+GGG | + | 42790:460279-460298 | MS.gene023729:intron | 50.0% |
| ! | TACACCGGTGATGACGCAAA+CGG | - | 42790:460189-460208 | None:intergenic | 50.0% |
| ! | TGCCCACCTCAAAGCTTTTC+AGG | + | 42790:461089-461108 | MS.gene023729:CDS | 50.0% |
| !! | CAGCCTGAAAAGCTTTGAGG+TGG | - | 42790:461095-461114 | None:intergenic | 50.0% |
| AAGCCCGTTTGCGTCATCAC+CGG | + | 42790:460182-460201 | MS.gene023729:CDS | 55.0% | |
| ACTCACAGGCGGAGTAAGAG+CGG | - | 42790:463118-463137 | None:intergenic | 55.0% | |
| GGAAGGTGAAGACCTTGGGT+GGG | - | 42790:460150-460169 | None:intergenic | 55.0% | |
| GGGCGGAGTACACTCTTTGT+TGG | - | 42790:462609-462628 | None:intergenic | 55.0% | |
| GGTAGTTGTAGCTTCAGGGG+CGG | - | 42790:462635-462654 | None:intergenic | 55.0% | |
| TACCCATCTGGCAACGCTGT+CGG | - | 42790:462182-462201 | None:intergenic | 55.0% | |
| TGGAAGGTGAAGACCTTGGG+TGG | - | 42790:460151-460170 | None:intergenic | 55.0% | |
| TGGTGCTTCTTGCGTGGTCT+AGG | + | 42790:460804-460823 | MS.gene023729:intron | 55.0% | |
| ! | ACACCGGTGATGACGCAAAC+GGG | - | 42790:460188-460207 | None:intergenic | 55.0% |
| ! | CCCGGTATGGATTGATGCAG+TGG | + | 42790:460919-460938 | MS.gene023729:intron | 55.0% |
| AATCCAGAAGCCACTGCCGC+AGG | - | 42790:461158-461177 | None:intergenic | 60.0% | |
| ATCCAGAAGCCACTGCCGCA+GGG | - | 42790:461157-461176 | None:intergenic | 60.0% | |
| CACCGACAGCGTTGCCAGAT+GGG | + | 42790:462177-462196 | MS.gene023729:CDS | 60.0% | |
| GGAATCGTTCCCGCACTCAG+AGG | - | 42790:463085-463104 | None:intergenic | 60.0% | |
| TCAGTACTTCCCTGCGGCAG+TGG | + | 42790:461145-461164 | MS.gene023729:CDS | 60.0% | |
| TCCAGCAAGCCTGTCTTGGG+TGG | + | 42790:463023-463042 | MS.gene023729:CDS | 60.0% | |
| TGTAGCTTCAGGGGCGGAGT+GGG | - | 42790:462629-462648 | None:intergenic | 60.0% | |
| TTGTAGCTTCAGGGGCGGAG+TGG | - | 42790:462630-462649 | None:intergenic | 60.0% | |
| CCACCGACAGCGTTGCCAGA+TGG | + | 42790:462176-462195 | MS.gene023729:CDS | 65.0% | |
| CCATCTGGCAACGCTGTCGG+TGG | - | 42790:462179-462198 | None:intergenic | 65.0% | |
| GCCACCCAAGACAGGCTTGC+TGG | - | 42790:463027-463046 | None:intergenic | 65.0% | |
| TTCCCTGCGGCAGTGGCTTC+TGG | + | 42790:461152-461171 | MS.gene023729:CDS | 65.0% | |
| AGCTTCAGGGGCGGAGTGGG+CGG | - | 42790:462626-462645 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 42790 | gene | 460065 | 463253 | 460065 | ID=MS.gene023729 |
| 42790 | mRNA | 460065 | 463253 | 460065 | ID=MS.gene023729.t1;Parent=MS.gene023729 |
| 42790 | exon | 460065 | 460205 | 460065 | ID=MS.gene023729.t1.exon1;Parent=MS.gene023729.t1 |
| 42790 | CDS | 460065 | 460205 | 460065 | ID=cds.MS.gene023729.t1;Parent=MS.gene023729.t1 |
| 42790 | exon | 460285 | 460351 | 460285 | ID=MS.gene023729.t1.exon2;Parent=MS.gene023729.t1 |
| 42790 | CDS | 460285 | 460351 | 460285 | ID=cds.MS.gene023729.t1;Parent=MS.gene023729.t1 |
| 42790 | exon | 460939 | 460967 | 460939 | ID=MS.gene023729.t1.exon3;Parent=MS.gene023729.t1 |
| 42790 | CDS | 460939 | 460967 | 460939 | ID=cds.MS.gene023729.t1;Parent=MS.gene023729.t1 |
| 42790 | exon | 461057 | 461265 | 461057 | ID=MS.gene023729.t1.exon4;Parent=MS.gene023729.t1 |
| 42790 | CDS | 461057 | 461265 | 461057 | ID=cds.MS.gene023729.t1;Parent=MS.gene023729.t1 |
| 42790 | exon | 461699 | 461817 | 461699 | ID=MS.gene023729.t1.exon5;Parent=MS.gene023729.t1 |
| 42790 | CDS | 461699 | 461817 | 461699 | ID=cds.MS.gene023729.t1;Parent=MS.gene023729.t1 |
| 42790 | exon | 461967 | 462062 | 461967 | ID=MS.gene023729.t1.exon6;Parent=MS.gene023729.t1 |
| 42790 | CDS | 461967 | 462062 | 461967 | ID=cds.MS.gene023729.t1;Parent=MS.gene023729.t1 |
| 42790 | exon | 462148 | 462223 | 462148 | ID=MS.gene023729.t1.exon7;Parent=MS.gene023729.t1 |
| 42790 | CDS | 462148 | 462223 | 462148 | ID=cds.MS.gene023729.t1;Parent=MS.gene023729.t1 |
| 42790 | exon | 462978 | 463131 | 462978 | ID=MS.gene023729.t1.exon8;Parent=MS.gene023729.t1 |
| 42790 | CDS | 462978 | 463131 | 462978 | ID=cds.MS.gene023729.t1;Parent=MS.gene023729.t1 |
| 42790 | exon | 463212 | 463253 | 463212 | ID=MS.gene023729.t1.exon9;Parent=MS.gene023729.t1 |
| 42790 | CDS | 463212 | 463253 | 463212 | ID=cds.MS.gene023729.t1;Parent=MS.gene023729.t1 |
| Gene Sequence |
| Protein sequence |
