AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene026596


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026596.t1 MTR_1g031180 94.314 299 17 0 18 316 18 316 0.0 592
MS.gene026596.t1 MTR_3g098470 76.948 308 71 0 9 316 4 311 0.0 510
MS.gene026596.t1 MTR_8g096060 73.667 300 76 1 17 316 14 310 3.55e-168 469
MS.gene026596.t1 MTR_4g087460 42.034 295 153 8 34 316 16 304 4.05e-71 223
MS.gene026596.t1 MTR_7g076660 40.484 289 147 6 42 316 9 286 4.15e-63 201
MS.gene026596.t1 MTR_7g076660 40.484 289 147 6 42 316 10 287 6.51e-63 201
MS.gene026596.t1 MTR_8g031610 40.667 300 141 8 42 316 7 294 1.01e-62 201
MS.gene026596.t1 MTR_8g031630 40.532 301 141 9 42 316 9 297 1.23e-62 201
MS.gene026596.t1 MTR_7g076655 40.484 289 147 6 42 316 9 286 1.49e-61 197
MS.gene026596.t1 MTR_8g032000 38.305 295 145 5 42 310 9 292 8.57e-61 196
MS.gene026596.t1 MTR_8g031650 40.333 300 141 9 43 316 104 391 8.95e-61 199
MS.gene026596.t1 MTR_8g031650 35.537 121 67 4 182 297 2 116 2.86e-13 70.1
MS.gene026596.t1 MTR_5g062280 39.935 308 141 8 37 316 4 295 1.06e-60 196
MS.gene026596.t1 MTR_8g031960 39.333 300 144 6 41 314 9 296 2.97e-60 194
MS.gene026596.t1 MTR_8g031600 40.264 303 144 7 40 316 7 298 3.36e-60 194
MS.gene026596.t1 MTR_8g032010 38.047 297 147 5 38 308 5 290 4.80e-60 194
MS.gene026596.t1 MTR_8g031980 38.284 303 149 6 39 315 6 296 6.49e-60 194
MS.gene026596.t1 MTR_8g031650 40.333 300 141 9 43 316 270 557 3.04e-59 199
MS.gene026596.t1 MTR_8g031650 40.000 285 131 9 42 297 9 282 2.83e-56 191
MS.gene026596.t1 MTR_8g031910 42.123 292 139 8 37 311 4 282 1.17e-58 190
MS.gene026596.t1 MTR_8g031990 36.066 305 158 5 38 316 5 298 4.45e-58 189
MS.gene026596.t1 MTR_8g031900 36.149 296 157 5 42 316 9 293 4.20e-57 186
MS.gene026596.t1 MTR_8g032020 37.086 302 152 6 42 316 10 300 1.05e-56 186
MS.gene026596.t1 MTR_3g079320 37.500 296 146 5 42 308 13 298 6.28e-56 184
MS.gene026596.t1 MTR_8g031940 39.116 294 141 8 42 308 9 291 9.28e-55 180
MS.gene026596.t1 MTR_7g076665 37.248 298 153 6 42 316 9 295 2.76e-54 179
MS.gene026596.t1 MTR_7g076660 38.971 272 141 6 59 316 2 262 3.58e-54 177
MS.gene026596.t1 MTR_7g106800 37.589 282 127 7 42 316 11 250 9.84e-47 159
MS.gene026596.t1 MTR_8g031850 32.734 278 153 4 42 316 9 255 3.11e-44 152
MS.gene026596.t1 MTR_5g083430 38.265 196 109 4 121 316 1 184 9.18e-35 125
MS.gene026596.t1 MTR_8g032030 40.828 169 72 5 39 180 6 173 1.93e-31 118
MS.gene026596.t1 MTR_3g068070 34.722 144 91 3 34 175 12 154 1.96e-12 66.6
MS.gene026596.t1 MTR_4g105310 24.567 289 170 10 42 313 51 308 1.92e-11 64.3
MS.gene026596.t1 MTR_4g105310 25.316 237 144 7 42 276 51 256 4.69e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026596.t1 AT5G51030 65.806 310 106 0 7 316 5 314 4.33e-164 459
MS.gene026596.t1 AT5G61830 68.690 313 95 2 7 316 4 316 1.40e-162 456
MS.gene026596.t1 AT5G61830 68.690 313 95 2 7 316 4 316 1.40e-162 456
MS.gene026596.t1 AT3G59710 46.290 283 141 5 28 308 7 280 5.74e-79 242
MS.gene026596.t1 AT3G59710 46.429 280 139 5 31 308 39 309 1.36e-77 240
MS.gene026596.t1 AT3G59710 45.745 282 142 5 29 308 18 290 2.35e-76 236
MS.gene026596.t1 AT3G61220 39.465 299 146 8 42 316 9 296 1.17e-59 193
MS.gene026596.t1 AT3G61220 39.465 299 146 8 42 316 16 303 2.11e-59 192
MS.gene026596.t1 AT3G61220 39.465 299 146 8 42 316 40 327 4.21e-59 192
MS.gene026596.t1 AT2G24190 38.255 298 148 8 42 315 9 294 4.54e-57 186
MS.gene026596.t1 AT2G24190 38.255 298 148 8 42 315 14 299 5.17e-57 186
MS.gene026596.t1 AT1G01800 35.880 301 157 7 41 316 6 295 3.12e-54 179
MS.gene026596.t1 AT1G01800 33.880 183 110 3 134 316 89 260 2.68e-26 105
MS.gene026596.t1 AT5G50130 25.566 309 171 13 30 315 27 299 1.09e-13 71.2
MS.gene026596.t1 AT5G50130 30.000 220 128 9 30 226 27 243 3.37e-13 68.9
MS.gene026596.t1 AT5G50130 29.646 226 122 10 30 226 27 244 3.69e-13 68.9
MS.gene026596.t1 AT5G50130 34.416 154 90 7 30 175 27 177 1.03e-12 68.2
MS.gene026596.t1 AT5G50130 34.416 154 90 7 30 175 27 177 1.08e-12 68.2
MS.gene026596.t1 AT1G63380 31.944 144 92 3 38 175 16 159 4.47e-12 65.9
MS.gene026596.t1 AT1G63380 31.944 144 92 3 38 175 20 163 5.14e-12 65.9
MS.gene026596.t1 AT1G63380 31.944 144 92 3 38 175 23 166 5.43e-12 65.9
MS.gene026596.t1 AT1G63380 31.944 144 92 3 38 175 18 161 5.45e-12 65.5
MS.gene026596.t1 AT1G62610 31.944 144 92 3 38 175 15 158 6.99e-12 65.1
MS.gene026596.t1 AT1G62610 31.944 144 92 3 38 175 16 159 7.05e-12 65.1
MS.gene026596.t1 AT1G62610 31.944 144 92 3 38 175 20 163 7.37e-12 65.1
MS.gene026596.t1 AT1G62610 31.944 144 92 3 38 175 14 157 7.68e-12 65.1
MS.gene026596.t1 AT5G50130 26.102 295 159 13 44 315 8 266 8.26e-12 65.5
MS.gene026596.t1 AT3G46170 31.293 147 95 3 38 178 27 173 1.95e-11 63.9
MS.gene026596.t1 AT3G55290 31.293 147 95 3 38 178 19 165 4.07e-11 63.2
MS.gene026596.t1 AT3G55290 31.293 147 95 3 38 178 18 164 4.15e-11 63.2
MS.gene026596.t1 AT3G55310 31.293 147 95 3 38 178 18 164 6.10e-11 62.4
MS.gene026596.t1 AT4G24050 29.388 245 128 11 42 277 37 245 8.11e-11 62.0

Find 75 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAACGGATGGTTTCATTAA+TGG 0.171749 1.1:-16558834 None:intergenic
TTATGGTGGTTTAGATATTC+TGG 0.207457 1.1:+16557974 MS.gene026596:CDS
ATGCTGGTGCTGAATCAATT+AGG 0.236783 1.1:+16557856 MS.gene026596:CDS
TTGAAGAGATTAACCTTCTA+AGG 0.249355 1.1:+16557507 MS.gene026596:CDS
TCTGCATGACCAAACAATTA+TGG 0.255042 1.1:+16559868 MS.gene026596:CDS
GTTATCGAAACAAATTATTA+TGG 0.280899 1.1:+16558783 MS.gene026596:CDS
GCTGGTGTTAATTTCAATCT+TGG 0.282930 1.1:+16558729 MS.gene026596:CDS
ATAAGCATTAACAGCAAGTT+TGG 0.293083 1.1:-16559690 None:intergenic
TACCTTTGGTGATCGGAATA+AGG 0.301057 1.1:-16557536 None:intergenic
ACCGGTGGAAATAGAGGAAT+TGG 0.315043 1.1:+16557768 MS.gene026596:CDS
TAATGCTTATACAAGGCTTA+TGG 0.345742 1.1:+16559703 MS.gene026596:CDS
GAAACTATTGCTGTCGTTAC+CGG 0.347929 1.1:+16557750 MS.gene026596:CDS
CAGTGGTTGCAGGAAAATTA+TGG 0.362541 1.1:+16557957 MS.gene026596:CDS
AATAAGGAATAGACCTTAGA+AGG 0.365707 1.1:-16557520 None:intergenic
TGCTGGTGCTGAATCAATTA+GGG 0.366104 1.1:+16557857 MS.gene026596:CDS
GAGTAATATCGAGTTTCTTT+CGG 0.367468 1.1:+16559565 MS.gene026596:CDS
GAATTGGGTTTGAGATTTGT+AGG 0.377648 1.1:+16557784 MS.gene026596:CDS
CTGGTGTTAATTTCAATCTT+GGG 0.380192 1.1:+16558730 MS.gene026596:CDS
GTTGAGGAAGGAGCTGATAC+TGG 0.389307 1.1:+16559830 MS.gene026596:CDS
CTGCATGACCAAACAATTAT+GGG 0.389652 1.1:+16559869 MS.gene026596:CDS
CCACTTTGTTCAGTGGTTGC+AGG 0.392622 1.1:+16557947 MS.gene026596:CDS
GAAGATGGAAGCTGGACATC+AGG 0.400850 1.1:+16559632 MS.gene026596:CDS
TGGGTGAAGACGGCTTTAAC+AGG 0.403091 1.1:+16559788 MS.gene026596:CDS
AAGGAGCTGATACTGGAGTA+TGG 0.430228 1.1:+16559837 MS.gene026596:CDS
TTAATGAAACCATCCGTTGT+TGG 0.467745 1.1:+16558837 MS.gene026596:CDS
CCACTGAACAAAGTGGTTGA+TGG 0.467844 1.1:-16557940 None:intergenic
GCAGGAAGGTGGTTTGGATG+TGG 0.470123 1.1:+16557884 MS.gene026596:CDS
AATGGGTAAGGCGGAGAAGA+AGG 0.474975 1.1:+16557454 None:intergenic
TCACGTCTAGGTCGACTAAA+CGG 0.479378 1.1:+16558882 MS.gene026596:CDS
TTTCGGAGGAACTGATTGAC+AGG 0.480683 1.1:+16559582 MS.gene026596:CDS
TGTAGGCAACTTGCTACTCA+TGG 0.483655 1.1:+16557801 MS.gene026596:CDS
TTAACTGCTATTGCCCGGGT+TGG 0.500994 1.1:+16559768 MS.gene026596:CDS
TAACTGCTATTGCCCGGGTT+GGG 0.501130 1.1:+16559769 MS.gene026596:CDS
AATCACCAATGTAGCCTTGA+GGG 0.505474 1.1:+16559535 MS.gene026596:CDS
AAGATGGAAGCTGGACATCA+GGG 0.508335 1.1:+16559633 MS.gene026596:CDS
CTCTGTTGAAAATGCTCGCA+AGG 0.514046 1.1:+16558761 MS.gene026596:CDS
AGATTGATACCTTTGGTGAT+CGG 0.520596 1.1:-16557543 None:intergenic
TAATTGTTTGGTCATGCAGA+AGG 0.520763 1.1:-16559865 None:intergenic
CCGGTGGAAATAGAGGAATT+GGG 0.523137 1.1:+16557769 MS.gene026596:CDS
AACAAGTAGAAGATGGAAGC+TGG 0.524013 1.1:+16559624 MS.gene026596:CDS
GAGTAATCAGTATATATTTG+AGG 0.527703 1.1:-16559662 None:intergenic
CCATCAACCACTTTGTTCAG+TGG 0.531554 1.1:+16557940 MS.gene026596:CDS
TTTGTTAACTGCTATTGCCC+GGG 0.539327 1.1:+16559764 MS.gene026596:CDS
TTGCTGTTAATGCTTATACA+AGG 0.539788 1.1:+16559696 MS.gene026596:CDS
CCCAATTCCTCTATTTCCAC+CGG 0.540422 1.1:-16557769 None:intergenic
TTGCCCGGGTTGGGTGAAGA+CGG 0.541413 1.1:+16559778 MS.gene026596:CDS
TTCCTTATTCCGATCACCAA+AGG 0.551276 1.1:+16557534 MS.gene026596:CDS
TTGCTCCCTCAAGGCTACAT+TGG 0.555869 1.1:-16559540 None:intergenic
TCACTGCATATAAATGGGTA+AGG 0.561657 1.1:+16557442 None:intergenic
GTCGTTACCGGTGGAAATAG+AGG 0.562574 1.1:+16557762 MS.gene026596:CDS
CTTCTGGCCTTCTGGTCGCT+CGG 0.566219 1.1:-16559738 None:intergenic
CCTGCAACCACTGAACAAAG+TGG 0.566437 1.1:-16557947 None:intergenic
GATGGAAGCTGGACATCAGG+GGG 0.568512 1.1:+16559635 MS.gene026596:CDS
AAAGCCGTCTTCACCCAACC+CGG 0.568919 1.1:-16559782 None:intergenic
ACATCAAGAGATGCTAATGC+TGG 0.581456 1.1:+16557840 MS.gene026596:CDS
AAGCTTTCCGAGCGACCAGA+AGG 0.585315 1.1:+16559731 MS.gene026596:CDS
TGCAGGGAACAATACTGTTG+AGG 0.586655 1.1:+16559814 MS.gene026596:CDS
TAATATCGAGTTTCTTTCGG+AGG 0.586814 1.1:+16559568 MS.gene026596:CDS
AATTGTTTGGTCATGCAGAA+GGG 0.587655 1.1:-16559864 None:intergenic
GTAAATGTAAGCTCACGTCT+AGG 0.591413 1.1:+16558870 MS.gene026596:CDS
ATTACTCAGTTGCTCCCTCA+AGG 0.595356 1.1:-16559549 None:intergenic
TGATGGTAGGTAAACAATGC+TGG 0.600125 1.1:+16558711 MS.gene026596:intron
ATTCGAGCACCAACAACGGA+TGG 0.604995 1.1:-16558846 None:intergenic
GGGAACAATACTGTTGAGGA+AGG 0.613804 1.1:+16559818 MS.gene026596:CDS
TACAATTCGAGCACCAACAA+CGG 0.619020 1.1:-16558850 None:intergenic
AGATGGAAGCTGGACATCAG+GGG 0.625603 1.1:+16559634 MS.gene026596:CDS
TAAGGCGGAGAAGAAGGAGA+AGG 0.634663 1.1:+16557460 MS.gene026596:CDS
AAGCCGTCTTCACCCAACCC+GGG 0.642912 1.1:-16559781 None:intergenic
GAATCACCAATGTAGCCTTG+AGG 0.646638 1.1:+16559534 MS.gene026596:CDS
ACTATTGCTGTCGTTACCGG+TGG 0.647178 1.1:+16557753 MS.gene026596:CDS
TGGTTGCAGGAAAATTATGG+TGG 0.649893 1.1:+16557960 MS.gene026596:CDS
CTTATACAAGGCTTATGGCG+AGG 0.650044 1.1:+16559708 MS.gene026596:CDS
TAGGTCGACTAAACGGAAGA+CGG 0.659235 1.1:+16558889 MS.gene026596:CDS
CTGCATATAAATGGGTAAGG+CGG 0.662103 1.1:+16557445 None:intergenic
ATGGAAGCTGGACATCAGGG+GGG 0.712462 1.1:+16559636 MS.gene026596:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACTATTAGGAAAGATT+TGG + chr1.1:16558454-16558473 MS.gene026596:intron 20.0%
!! ATCAAAATGGATAAAAATCT+TGG - chr1.1:16558050-16558069 None:intergenic 20.0%
!! GTTATCGAAACAAATTATTA+TGG + chr1.1:16558783-16558802 MS.gene026596:CDS 20.0%
!!! AAAAACCATTTTTGCAAAAA+TGG + chr1.1:16558921-16558940 MS.gene026596:intron 20.0%
!!! AAATGTAGAGTTGATATTAA+TGG + chr1.1:16559494-16559513 MS.gene026596:intron 20.0%
!!! AATGTAGAGTTGATATTAAT+GGG + chr1.1:16559495-16559514 MS.gene026596:intron 20.0%
!!! AGTAACAAAAATTTTAACGT+TGG - chr1.1:16559308-16559327 None:intergenic 20.0%
!!! ATTTCACTTTTAAGTGTTTA+TGG + chr1.1:16557573-16557592 MS.gene026596:intron 20.0%
!!! TTATCCATTTTGATTACTTT+TGG + chr1.1:16558056-16558075 MS.gene026596:intron 20.0%
!!! TTATGTCAGATAGAAATTTT+AGG - chr1.1:16559216-16559235 None:intergenic 20.0%
! AAAAACTTCCCATAATTGTT+TGG - chr1.1:16559880-16559899 None:intergenic 25.0%
! AGTCTGAATTACATATATTG+TGG + chr1.1:16559275-16559294 MS.gene026596:intron 25.0%
! CAATCCAAAAGTAATCAAAA+TGG - chr1.1:16558063-16558082 None:intergenic 25.0%
! CTTCTAACTATTATCTTTGA+TGG + chr1.1:16558694-16558713 MS.gene026596:intron 25.0%
! GAGTAATCAGTATATATTTG+AGG - chr1.1:16559665-16559684 None:intergenic 25.0%
! TCTTTCACATTTGATCTAAA+TGG + chr1.1:16558147-16558166 MS.gene026596:intron 25.0%
!! TAACTATTATCTTTGATGGT+AGG + chr1.1:16558698-16558717 MS.gene026596:intron 25.0%
!! TCTTTCCTAATAGTTTTTCT+AGG - chr1.1:16558452-16558471 None:intergenic 25.0%
!! TGAACTATATATGTTGATTG+TGG + chr1.1:16558647-16558666 MS.gene026596:intron 25.0%
!! TTTTTACAACAAGTAGAAGA+TGG + chr1.1:16559617-16559636 MS.gene026596:CDS 25.0%
!!! AGATGCATTTTTTTACTTTG+AGG - chr1.1:16558993-16559012 None:intergenic 25.0%
!!! ATTTTAGGTGATAAGGTAAT+AGG - chr1.1:16559201-16559220 None:intergenic 25.0%
!!! GATAGAAATTTTAGGTGATA+AGG - chr1.1:16559208-16559227 None:intergenic 25.0%
!!! GATTACCATTTTTGCAAAAA+TGG - chr1.1:16558929-16558948 None:intergenic 25.0%
!!! TGCTTATTTTATTCTCATGT+TGG - chr1.1:16558205-16558224 None:intergenic 25.0%
AAATAAGCATAGTGTAGATG+AGG + chr1.1:16558216-16558235 MS.gene026596:intron 30.0%
AAATCTGAGCAAAACTATGA+AGG - chr1.1:16558960-16558979 None:intergenic 30.0%
AATAAGGAATAGACCTTAGA+AGG - chr1.1:16557523-16557542 None:intergenic 30.0%
AGCAGTTAACAAAAATCTTC+TGG - chr1.1:16559757-16559776 None:intergenic 30.0%
ATAAGCATTAACAGCAAGTT+TGG - chr1.1:16559693-16559712 None:intergenic 30.0%
ATAGTTTACCACAAAGTAGA+TGG - chr1.1:16559423-16559442 None:intergenic 30.0%
ATGACTATATTAGAGAGAGT+TGG + chr1.1:16558285-16558304 MS.gene026596:intron 30.0%
GAAGACCTAGAAAAACTATT+AGG + chr1.1:16558444-16558463 MS.gene026596:intron 30.0%
GAGTAATATCGAGTTTCTTT+CGG + chr1.1:16559565-16559584 MS.gene026596:CDS 30.0%
GCAAAATAGATTGATACCTT+TGG - chr1.1:16557553-16557572 None:intergenic 30.0%
GTGATAAGGTAATAGGATAA+GGG - chr1.1:16559194-16559213 None:intergenic 30.0%
TAATGCTTATACAAGGCTTA+TGG + chr1.1:16559703-16559722 MS.gene026596:CDS 30.0%
TGACTATATTAGAGAGAGTT+GGG + chr1.1:16558286-16558305 MS.gene026596:intron 30.0%
TGGTGTATGATAGAACATTA+TGG + chr1.1:16558501-16558520 MS.gene026596:intron 30.0%
TTATGGTGGTTTAGATATTC+TGG + chr1.1:16557974-16557993 MS.gene026596:CDS 30.0%
TTCTATCATACACCATGTTT+CGG - chr1.1:16558496-16558515 None:intergenic 30.0%
TTGAAGAGATTAACCTTCTA+AGG + chr1.1:16557507-16557526 MS.gene026596:CDS 30.0%
! CTGGTGTTAATTTCAATCTT+GGG + chr1.1:16558730-16558749 MS.gene026596:CDS 30.0%
! TTGCTGTTAATGCTTATACA+AGG + chr1.1:16559696-16559715 MS.gene026596:CDS 30.0%
AAGGAATTGCAGCATTTGAA+AGG - chr1.1:16559358-16559377 None:intergenic 35.0%
AATTGTTTGGTCATGCAGAA+GGG - chr1.1:16559867-16559886 None:intergenic 35.0%
ACAACGGATGGTTTCATTAA+TGG - chr1.1:16558837-16558856 None:intergenic 35.0%
ACCTATAGTAGAAAAGATGG+TGG + chr1.1:16558314-16558333 MS.gene026596:intron 35.0%
ACTTTGTCCCCTATGAAATA+GGG + chr1.1:16559100-16559119 MS.gene026596:intron 35.0%
AGCACCTATAGTAGAAAAGA+TGG + chr1.1:16558311-16558330 MS.gene026596:intron 35.0%
AGTCATGGTAAAACACCTTT+AGG - chr1.1:16559083-16559102 None:intergenic 35.0%
ATAAGGTAATAGGATAAGGG+CGG - chr1.1:16559191-16559210 None:intergenic 35.0%
CACCTATAGATTCTGTAGTA+AGG + chr1.1:16558372-16558391 MS.gene026596:intron 35.0%
CATCACTAGAGTATGCTAAA+AGG - chr1.1:16559377-16559396 None:intergenic 35.0%
CTCCTTACTACAGAATCTAT+AGG - chr1.1:16558377-16558396 None:intergenic 35.0%
CTGCATGACCAAACAATTAT+GGG + chr1.1:16559869-16559888 MS.gene026596:CDS 35.0%
GACTATATTAGAGAGAGTTG+GGG + chr1.1:16558287-16558306 MS.gene026596:intron 35.0%
GGTGATAAGGTAATAGGATA+AGG - chr1.1:16559195-16559214 None:intergenic 35.0%
GTGAACATGGAATTAAACAC+AGG + chr1.1:16558600-16558619 MS.gene026596:intron 35.0%
TAATATCGAGTTTCTTTCGG+AGG + chr1.1:16559568-16559587 MS.gene026596:CDS 35.0%
TAATTGTTTGGTCATGCAGA+AGG - chr1.1:16559868-16559887 None:intergenic 35.0%
TAGCAAGTGTTCACTATACT+GGG - chr1.1:16557669-16557688 None:intergenic 35.0%
TCTGCATGACCAAACAATTA+TGG + chr1.1:16559868-16559887 MS.gene026596:CDS 35.0%
TGATCGTAACATTGTGAACA+TGG + chr1.1:16558587-16558606 MS.gene026596:intron 35.0%
TTAATGAAACCATCCGTTGT+TGG + chr1.1:16558837-16558856 MS.gene026596:CDS 35.0%
TTAGCAAGTGTTCACTATAC+TGG - chr1.1:16557670-16557689 None:intergenic 35.0%
! AGATTGATACCTTTGGTGAT+CGG - chr1.1:16557546-16557565 None:intergenic 35.0%
! CATCTCACTGTCATCTTTTT+GGG + chr1.1:16559008-16559027 MS.gene026596:intron 35.0%
! GAATTGGGTTTGAGATTTGT+AGG + chr1.1:16557784-16557803 MS.gene026596:CDS 35.0%
! GCTGGTGTTAATTTCAATCT+TGG + chr1.1:16558729-16558748 MS.gene026596:CDS 35.0%
! TCCACCATCTTTTCTACTAT+AGG - chr1.1:16558318-16558337 None:intergenic 35.0%
! TGAATCAATTAGGGTTTTGC+AGG + chr1.1:16557866-16557885 MS.gene026596:CDS 35.0%
! TTTGATTGCGCTTCATTTTG+TGG + chr1.1:16559456-16559475 MS.gene026596:intron 35.0%
! TTTTGTTAACTGCTATTGCC+CGG + chr1.1:16559763-16559782 MS.gene026596:CDS 35.0%
!! CAATTTTGAGTACATGTAGG+TGG + chr1.1:16557718-16557737 MS.gene026596:intron 35.0%
!! CGTCAATTTTGAGTACATGT+AGG + chr1.1:16557715-16557734 MS.gene026596:intron 35.0%
!! TTCTGAAATATACCGCCTAA+AGG + chr1.1:16559065-16559084 MS.gene026596:intron 35.0%
!!! AAGTTTTTTTGCTGAGAGAC+GGG + chr1.1:16559892-16559911 MS.gene026596:CDS 35.0%
!!! GAAGTTTTTTTGCTGAGAGA+CGG + chr1.1:16559891-16559910 MS.gene026596:CDS 35.0%
AACAAGTAGAAGATGGAAGC+TGG + chr1.1:16559624-16559643 MS.gene026596:CDS 40.0%
ACATCAAGAGATGCTAATGC+TGG + chr1.1:16557840-16557859 MS.gene026596:CDS 40.0%
AGCAAGTGTTCACTATACTG+GGG - chr1.1:16557668-16557687 None:intergenic 40.0%
AGTAAGGAGAGTAGATCAGA+TGG + chr1.1:16558388-16558407 MS.gene026596:intron 40.0%
ATCTAAATGGAACAGAGTGC+TGG + chr1.1:16558160-16558179 MS.gene026596:intron 40.0%
CAGTGGTTGCAGGAAAATTA+TGG + chr1.1:16557957-16557976 MS.gene026596:CDS 40.0%
CATGGTAAAACACCTTTAGG+CGG - chr1.1:16559080-16559099 None:intergenic 40.0%
CTACAGACCCCTATTTCATA+GGG - chr1.1:16559111-16559130 None:intergenic 40.0%
CTTTGTCCCCTATGAAATAG+GGG + chr1.1:16559101-16559120 MS.gene026596:intron 40.0%
GAAACTATTGCTGTCGTTAC+CGG + chr1.1:16557750-16557769 MS.gene026596:CDS 40.0%
GACTTTGTCCCCTATGAAAT+AGG + chr1.1:16559099-16559118 MS.gene026596:intron 40.0%
GGTCTGTAGCTGATGTTTAT+CGG + chr1.1:16559122-16559141 MS.gene026596:intron 40.0%
GTAAATGTAAGCTCACGTCT+AGG + chr1.1:16558870-16558889 MS.gene026596:CDS 40.0%
GTGGTAAGACTAGATGAGAT+AGG + chr1.1:16558255-16558274 MS.gene026596:intron 40.0%
TAAGGTAATAGGATAAGGGC+GGG - chr1.1:16559190-16559209 None:intergenic 40.0%
TACAATTCGAGCACCAACAA+CGG - chr1.1:16558853-16558872 None:intergenic 40.0%
TACAGACCCCTATTTCATAG+GGG - chr1.1:16559110-16559129 None:intergenic 40.0%
TCACTAGACCATCTACTTTG+TGG + chr1.1:16559412-16559431 MS.gene026596:intron 40.0%
TGATGGTAGGTAAACAATGC+TGG + chr1.1:16558711-16558730 MS.gene026596:intron 40.0%
TGGATAGATTACAACAGCAC+AGG - chr1.1:16558030-16558049 None:intergenic 40.0%
TGGTTGCAGGAAAATTATGG+TGG + chr1.1:16557960-16557979 MS.gene026596:CDS 40.0%
TTCCTTATTCCGATCACCAA+AGG + chr1.1:16557534-16557553 MS.gene026596:CDS 40.0%
TTTCATAGGGGACAAAGTCA+TGG - chr1.1:16559098-16559117 None:intergenic 40.0%
TTTGTTAACTGCTATTGCCC+GGG + chr1.1:16559764-16559783 MS.gene026596:CDS 40.0%
! AAGCCTTTTCCCACTAATTG+GGG - chr1.1:16558550-16558569 None:intergenic 40.0%
! AATCACCAATGTAGCCTTGA+GGG + chr1.1:16559535-16559554 MS.gene026596:CDS 40.0%
! ACAAAAATCTTCTGGCCTTC+TGG - chr1.1:16559749-16559768 None:intergenic 40.0%
! ATGCTGGTGCTGAATCAATT+AGG + chr1.1:16557856-16557875 MS.gene026596:CDS 40.0%
! CAAGCCTTTTCCCACTAATT+GGG - chr1.1:16558551-16558570 None:intergenic 40.0%
! GCATCTCACTGTCATCTTTT+TGG + chr1.1:16559007-16559026 MS.gene026596:intron 40.0%
! TACCTTTGGTGATCGGAATA+AGG - chr1.1:16557539-16557558 None:intergenic 40.0%
! TCAATTAGGGTTTTGCAGGA+AGG + chr1.1:16557870-16557889 MS.gene026596:CDS 40.0%
! TGCTGGTGCTGAATCAATTA+GGG + chr1.1:16557857-16557876 MS.gene026596:CDS 40.0%
!! TTTTGAGTACATGTAGGTGG+TGG + chr1.1:16557721-16557740 MS.gene026596:intron 40.0%
AAGATGGAAGCTGGACATCA+GGG + chr1.1:16559633-16559652 MS.gene026596:CDS 45.0%
AAGGAGCTGATACTGGAGTA+TGG + chr1.1:16559837-16559856 MS.gene026596:CDS 45.0%
AAGGTAATAGGATAAGGGCG+GGG - chr1.1:16559189-16559208 None:intergenic 45.0%
ACCGGTGGAAATAGAGGAAT+TGG + chr1.1:16557768-16557787 MS.gene026596:CDS 45.0%
ACTAATTGGGGTCAGCTACA+TGG - chr1.1:16558538-16558557 None:intergenic 45.0%
ATGTAGCTGACCCCAATTAG+TGG + chr1.1:16558537-16558556 MS.gene026596:intron 45.0%
ATTACTCAGTTGCTCCCTCA+AGG - chr1.1:16559552-16559571 None:intergenic 45.0%
CCAATTAGTGGGAAAAGGCT+TGG + chr1.1:16558549-16558568 MS.gene026596:intron 45.0%
CCACTGAACAAAGTGGTTGA+TGG - chr1.1:16557943-16557962 None:intergenic 45.0%
CCATCAACCACTTTGTTCAG+TGG + chr1.1:16557940-16557959 MS.gene026596:CDS 45.0%
CCCAATTCCTCTATTTCCAC+CGG - chr1.1:16557772-16557791 None:intergenic 45.0%
CCGGTGGAAATAGAGGAATT+GGG + chr1.1:16557769-16557788 MS.gene026596:CDS 45.0%
CTCTGTTGAAAATGCTCGCA+AGG + chr1.1:16558761-16558780 MS.gene026596:CDS 45.0%
CTTATACAAGGCTTATGGCG+AGG + chr1.1:16559708-16559727 MS.gene026596:CDS 45.0%
GATTACAACAGCACAGGCTA+TGG - chr1.1:16558024-16558043 None:intergenic 45.0%
GCTACAGACCCCTATTTCAT+AGG - chr1.1:16559112-16559131 None:intergenic 45.0%
GGGAACAATACTGTTGAGGA+AGG + chr1.1:16559818-16559837 MS.gene026596:CDS 45.0%
TAGGTCGACTAAACGGAAGA+CGG + chr1.1:16558889-16558908 MS.gene026596:CDS 45.0%
TAGTGAGCTGTACCGAAACA+TGG + chr1.1:16558481-16558500 MS.gene026596:intron 45.0%
TCACGTCTAGGTCGACTAAA+CGG + chr1.1:16558882-16558901 MS.gene026596:CDS 45.0%
TGACCCCAATTAGTGGGAAA+AGG + chr1.1:16558544-16558563 MS.gene026596:intron 45.0%
TGCAGGGAACAATACTGTTG+AGG + chr1.1:16559814-16559833 MS.gene026596:CDS 45.0%
TGTAGATGAGGATGTTGCGT+TGG + chr1.1:16558228-16558247 MS.gene026596:intron 45.0%
TGTAGCTGACCCCAATTAGT+GGG + chr1.1:16558538-16558557 MS.gene026596:intron 45.0%
TTTCGGAGGAACTGATTGAC+AGG + chr1.1:16559582-16559601 MS.gene026596:CDS 45.0%
! AGTTGATGCAGTGAAGCAGA+TGG + chr1.1:16559239-16559258 MS.gene026596:intron 45.0%
! ATTAGGGTTTTGCAGGAAGG+TGG + chr1.1:16557873-16557892 MS.gene026596:CDS 45.0%
! CCAAGCCTTTTCCCACTAAT+TGG - chr1.1:16558552-16558571 None:intergenic 45.0%
! GAATCACCAATGTAGCCTTG+AGG + chr1.1:16559534-16559553 MS.gene026596:CDS 45.0%
! TGTATTTGCCCCTCTAGAAG+AGG - chr1.1:16559159-16559178 None:intergenic 45.0%
!! ACGGCTTTAACAGGTTTTGC+AGG + chr1.1:16559797-16559816 MS.gene026596:CDS 45.0%
!! CGGCTTTAACAGGTTTTGCA+GGG + chr1.1:16559798-16559817 MS.gene026596:CDS 45.0%
!! TGTAGGCAACTTGCTACTCA+TGG + chr1.1:16557801-16557820 MS.gene026596:CDS 45.0%
ACTATTGCTGTCGTTACCGG+TGG + chr1.1:16557753-16557772 MS.gene026596:CDS 50.0%
AGATGGAAGCTGGACATCAG+GGG + chr1.1:16559634-16559653 MS.gene026596:CDS 50.0%
AGGATGTTGCGTTGGATGTG+TGG + chr1.1:16558236-16558255 MS.gene026596:intron 50.0%
ATTCGAGCACCAACAACGGA+TGG - chr1.1:16558849-16558868 None:intergenic 50.0%
CCACTTTGTTCAGTGGTTGC+AGG + chr1.1:16557947-16557966 MS.gene026596:CDS 50.0%
CCTGCAACCACTGAACAAAG+TGG - chr1.1:16557950-16557969 None:intergenic 50.0%
CTCTGTCTCTAGCGATCTGA+CGG - chr1.1:16558424-16558443 None:intergenic 50.0%
GAAGATGGAAGCTGGACATC+AGG + chr1.1:16559632-16559651 MS.gene026596:CDS 50.0%
GTCGTTACCGGTGGAAATAG+AGG + chr1.1:16557762-16557781 MS.gene026596:CDS 50.0%
GTTGAGGAAGGAGCTGATAC+TGG + chr1.1:16559830-16559849 MS.gene026596:CDS 50.0%
TAACTGCTATTGCCCGGGTT+GGG + chr1.1:16559769-16559788 MS.gene026596:CDS 50.0%
TAAGGCGGAGAAGAAGGAGA+AGG + chr1.1:16557460-16557479 MS.gene026596:CDS 50.0%
TAGCCGCTTCCTCTTCTAGA+GGG + chr1.1:16559147-16559166 MS.gene026596:intron 50.0%
TTAACTGCTATTGCCCGGGT+TGG + chr1.1:16559768-16559787 MS.gene026596:CDS 50.0%
TTAGCCGCTTCCTCTTCTAG+AGG + chr1.1:16559146-16559165 MS.gene026596:intron 50.0%
TTGCTCCCTCAAGGCTACAT+TGG - chr1.1:16559543-16559562 None:intergenic 50.0%
! GGTTTTGCAGGAAGGTGGTT+TGG + chr1.1:16557878-16557897 MS.gene026596:CDS 50.0%
! TGGGTGAAGACGGCTTTAAC+AGG + chr1.1:16559788-16559807 MS.gene026596:CDS 50.0%
AAAGCCGTCTTCACCCAACC+CGG - chr1.1:16559785-16559804 None:intergenic 55.0%
AAGCTTTCCGAGCGACCAGA+AGG + chr1.1:16559731-16559750 MS.gene026596:CDS 55.0%
AATAGGATAAGGGCGGGGTC+AGG - chr1.1:16559184-16559203 None:intergenic 55.0%
ATGGAAGCTGGACATCAGGG+GGG + chr1.1:16559636-16559655 MS.gene026596:CDS 55.0%
CGTCAGATCGCTAGAGACAG+AGG + chr1.1:16558422-16558441 MS.gene026596:intron 55.0%
GATGGAAGCTGGACATCAGG+GGG + chr1.1:16559635-16559654 MS.gene026596:CDS 55.0%
! AGCCGCTTCCTCTTCTAGAG+GGG + chr1.1:16559148-16559167 MS.gene026596:intron 55.0%
! GCAGGAAGGTGGTTTGGATG+TGG + chr1.1:16557884-16557903 MS.gene026596:CDS 55.0%
! TGCCCCTCTAGAAGAGGAAG+CGG - chr1.1:16559153-16559172 None:intergenic 55.0%
!! GAACAGAGTGCTGGCTTGCT+GGG + chr1.1:16558169-16558188 MS.gene026596:intron 55.0%
AAGCCGTCTTCACCCAACCC+GGG - chr1.1:16559784-16559803 None:intergenic 60.0%
! CTTCTGGCCTTCTGGTCGCT+CGG - chr1.1:16559741-16559760 None:intergenic 60.0%
! TTGCCCGGGTTGGGTGAAGA+CGG + chr1.1:16559778-16559797 MS.gene026596:CDS 60.0%
!! GGAACAGAGTGCTGGCTTGC+TGG + chr1.1:16558168-16558187 MS.gene026596:intron 60.0%
GAAGCTGGACATCAGGGGGG+TGG + chr1.1:16559639-16559658 MS.gene026596:CDS 65.0%
!! CAGAGTGCTGGCTTGCTGGG+CGG + chr1.1:16558172-16558191 MS.gene026596:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 16557455 16559928 16557455 ID=MS.gene026596
chr1.1 mRNA 16557455 16559928 16557455 ID=MS.gene026596.t1;Parent=MS.gene026596
chr1.1 exon 16557455 16557555 16557455 ID=MS.gene026596.t1.exon1;Parent=MS.gene026596.t1
chr1.1 CDS 16557455 16557555 16557455 ID=cds.MS.gene026596.t1;Parent=MS.gene026596.t1
chr1.1 exon 16557737 16557995 16557737 ID=MS.gene026596.t1.exon2;Parent=MS.gene026596.t1
chr1.1 CDS 16557737 16557995 16557737 ID=cds.MS.gene026596.t1;Parent=MS.gene026596.t1
chr1.1 exon 16558720 16558914 16558720 ID=MS.gene026596.t1.exon3;Parent=MS.gene026596.t1
chr1.1 CDS 16558720 16558914 16558720 ID=cds.MS.gene026596.t1;Parent=MS.gene026596.t1
chr1.1 exon 16559533 16559928 16559533 ID=MS.gene026596.t1.exon4;Parent=MS.gene026596.t1
chr1.1 CDS 16559533 16559928 16559533 ID=cds.MS.gene026596.t1;Parent=MS.gene026596.t1
Gene Sequence

>MS.gene026596

ATGGGTAAGGCGGAGAAGAAGGAGAAGGCAAAAGAACGAAGAGAAAAGAGACTTGAAGAGATTAACCTTCTAAGGTCTATTCCTTATTCCGATCACCAAAGGTATCAATCTATTTTGCATTTCACTTTTAAGTGTTTATGGAAATAAGCTAAAAACAACTTAAGAATAGTATATCATAAATTGCTTATGCGAGTTCATAAGATTATAATTCCCCAGTATAGTGAACACTTGCTAATGAAATTATACTCTTGAATTTTTGTCGTCAATTTTGAGTACATGTAGGTGGTGGTCTAAAGAAACTATTGCTGTCGTTACCGGTGGAAATAGAGGAATTGGGTTTGAGATTTGTAGGCAACTTGCTACTCATGGATTGACTGTTATACTAACATCAAGAGATGCTAATGCTGGTGCTGAATCAATTAGGGTTTTGCAGGAAGGTGGTTTGGATGTGGTTTATCATCAACTTGATATAGTCGATGATTCATCCATCAACCACTTTGTTCAGTGGTTGCAGGAAAATTATGGTGGTTTAGATATTCTGGTTAGTTTCTAAAATTTGCTTTCTTCCATAGCCTGTGCTGTTGTAATCTATCCAAGATTTTTATCCATTTTGATTACTTTTGGATTGTCAACTTCTATTATGTATAATATTCACAAAATCAAGTTGCTTTAGATATACTTATTTCTTTCTTTCTTTCACATTTGATCTAAATGGAACAGAGTGCTGGCTTGCTGGGCGGTGAAAAACCAACATGAGAATAAAATAAGCATAGTGTAGATGAGGATGTTGCGTTGGATGTGTGGTAAGACTAGATGAGATAGGATTAGAAATGACTATATTAGAGAGAGTTGGGGTAGCACCTATAGTAGAAAAGATGGTGGAAAACATACTTAGCAGTTTGCGCATGTAGAAAGAACACCTATAGATTCTGTAGTAAGGAGAGTAGATCAGATGGATTATAGTCACCGTCAGATCGCTAGAGACAGAGGAAGACCTAGAAAAACTATTAGGAAAGATTTGGAAATTAGTGAGCTGTACCGAAACATGGTGTATGATAGAACATTATGGCGTAATTTGATCCATGTAGCTGACCCCAATTAGTGGGAAAAGGCTTGGTTGTTATTGTATGTTTGATCGTAACATTGTGAACATGGAATTAAACACAGGAGATAATTAATTGAATTTTTACTATGAACTATATATGTTGATTGTGGTTTAACACATTTCTTTATTTTATGCTTCTAACTATTATCTTTGATGGTAGGTAAACAATGCTGGTGTTAATTTCAATCTTGGGTCTGACAACTCTGTTGAAAATGCTCGCAAGGTTATCGAAACAAATTATTATGGCATAAAAAATTTGACTGAAGCTCTTATTCCATTAATGAAACCATCCGTTGTTGGTGCTCGAATTGTAAATGTAAGCTCACGTCTAGGTCGACTAAACGGAAGACGGAATGTAAGTAAAAACCATTTTTGCAAAAATGGTAATCTCAACATTCCTTCATAGTTTTGCTCAGATTTCTTCTAGCATCCTCAAAGTAAAAAAATGCATCTCACTGTCATCTTTTTGGGTCTAAACTGAACAATTTTTCACACTTAAATGTTCTTCTGAAATATACCGCCTAAAGGTGTTTTACCATGACTTTGTCCCCTATGAAATAGGGGTCTGTAGCTGATGTTTATCGGTTTAGCCGCTTCCTCTTCTAGAGGGGCAAATACACTCCTGACCCCGCCCTTATCCTATTACCTTATCACCTAAAATTTCTATCTGACATAAGTTAGTTGATGCAGTGAAGCAGATGGTTACATAAACTATAGTCTGAATTACATATATTGTGGTAAAATTCCAACGTTAAAATTTTTGTTACTTATATAAATATAGATAAAATGAAAAATCCTTTCAAATGCTGCAATTCCTTTTAGCATACTCTAGTGATGTATTTCTTGAACAGCTCACTAGACCATCTACTTTGTGGTAAACTATTTTCATTAGTAGCTTTGATTGCGCTTCATTTTGTGGTATATAACTTCTGCAAAATGTAGAGTTGATATTAATGGGTTGCTTGATTGACAGAGAATCACCAATGTAGCCTTGAGGGAGCAACTGAGTAATATCGAGTTTCTTTCGGAGGAACTGATTGACAGGACTCTATCTACATTTTTACAACAAGTAGAAGATGGAAGCTGGACATCAGGGGGGTGGCCTCAAATATATACTGATTACTCAGTGTCCAAACTTGCTGTTAATGCTTATACAAGGCTTATGGCGAGGAAGCTTTCCGAGCGACCAGAAGGCCAGAAGATTTTTGTTAACTGCTATTGCCCGGGTTGGGTGAAGACGGCTTTAACAGGTTTTGCAGGGAACAATACTGTTGAGGAAGGAGCTGATACTGGAGTATGGCTTTCCCTTCTGCATGACCAAACAATTATGGGAAGTTTTTTTGCTGAGAGACGGGAAATTAACTTTTAA

Protein sequence

>MS.gene026596.t1

MGKAEKKEKAKERREKRLEEINLLRSIPYSDHQRWWSKETIAVVTGGNRGIGFEICRQLATHGLTVILTSRDANAGAESIRVLQEGGLDVVYHQLDIVDDSSINHFVQWLQENYGGLDILVNNAGVNFNLGSDNSVENARKVIETNYYGIKNLTEALIPLMKPSVVGARIVNVSSRLGRLNGRRNRITNVALREQLSNIEFLSEELIDRTLSTFLQQVEDGSWTSGGWPQIYTDYSVSKLAVNAYTRLMARKLSERPEGQKIFVNCYCPGWVKTALTGFAGNNTVEEGADTGVWLSLLHDQTIMGSFFAERREINF