AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene030521

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030521.t1 MTR_8g096060 96.166 313 9 1 1 313 1 310 0.0 616
MS.gene030521.t1 MTR_3g098470 83.067 313 51 1 1 313 1 311 0.0 555
MS.gene030521.t1 MTR_1g031180 73.826 298 78 0 16 313 19 316 2.58e-172 480
MS.gene030521.t1 MTR_4g087460 41.017 295 156 8 31 313 16 304 7.91e-70 219
MS.gene030521.t1 MTR_8g032000 38.644 295 144 5 39 307 9 292 1.33e-63 203
MS.gene030521.t1 MTR_8g032010 38.047 297 147 6 35 305 5 290 2.43e-62 200
MS.gene030521.t1 MTR_8g031960 39.000 300 145 6 38 311 9 296 6.78e-62 199
MS.gene030521.t1 MTR_8g031980 37.954 303 150 6 36 312 6 296 1.64e-61 197
MS.gene030521.t1 MTR_8g031990 36.393 305 157 5 35 313 5 298 6.15e-61 196
MS.gene030521.t1 MTR_7g076660 39.446 289 150 6 39 313 9 286 1.53e-60 195
MS.gene030521.t1 MTR_7g076660 39.446 289 150 6 39 313 10 287 2.46e-60 194
MS.gene030521.t1 MTR_3g079320 37.748 302 149 5 33 305 7 298 2.76e-60 195
MS.gene030521.t1 MTR_7g076655 39.792 289 149 6 39 313 9 286 5.59e-60 193
MS.gene030521.t1 MTR_8g031910 40.893 291 144 6 34 308 4 282 1.35e-59 192
MS.gene030521.t1 MTR_8g032020 37.417 302 151 6 39 313 10 300 1.74e-58 190
MS.gene030521.t1 MTR_5g062280 38.158 304 152 6 34 313 4 295 1.59e-57 187
MS.gene030521.t1 MTR_8g031940 39.796 294 139 8 39 305 9 291 5.00e-57 186
MS.gene030521.t1 MTR_8g031900 35.135 296 160 5 39 313 9 293 1.73e-56 184
MS.gene030521.t1 MTR_8g031630 37.542 301 150 9 39 313 9 297 8.88e-56 183
MS.gene030521.t1 MTR_8g031610 37.333 300 151 8 39 313 7 294 6.28e-55 181
MS.gene030521.t1 MTR_8g031650 37.333 300 150 9 40 313 104 391 6.30e-54 181
MS.gene030521.t1 MTR_8g031650 37.209 129 70 4 179 302 2 124 2.49e-14 73.2
MS.gene030521.t1 MTR_8g031600 36.928 306 150 7 37 313 7 298 3.16e-53 176
MS.gene030521.t1 MTR_8g031650 37.333 300 150 9 40 313 270 557 1.35e-52 181
MS.gene030521.t1 MTR_8g031650 38.225 293 141 9 39 302 9 290 2.97e-51 177
MS.gene030521.t1 MTR_7g076660 37.868 272 144 6 56 313 2 262 5.28e-52 172
MS.gene030521.t1 MTR_7g076665 35.117 299 158 6 39 313 9 295 2.78e-49 166
MS.gene030521.t1 MTR_7g106800 35.816 282 132 7 39 313 11 250 3.71e-46 157
MS.gene030521.t1 MTR_8g031850 32.130 277 156 5 39 313 9 255 2.81e-43 149
MS.gene030521.t1 MTR_5g083430 36.224 196 113 4 118 313 1 184 4.72e-34 123
MS.gene030521.t1 MTR_8g032030 39.665 179 80 5 36 187 6 183 1.45e-31 118
MS.gene030521.t1 MTR_4g105310 27.211 294 156 11 39 310 51 308 5.55e-14 72.0
MS.gene030521.t1 MTR_4g105310 28.926 242 129 8 39 273 51 256 1.05e-12 67.4
MS.gene030521.t1 MTR_3g068070 35.374 147 86 4 31 172 12 154 4.88e-12 65.5
MS.gene030521.t1 MTR_6g053550 26.936 297 149 13 39 307 40 296 7.54e-12 65.5
MS.gene030521.t1 MTR_8g442750 31.973 147 93 2 35 174 15 161 1.96e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene030521.t1 AT5G51030 71.246 313 90 0 1 313 2 314 1.23e-177 493
MS.gene030521.t1 AT5G61830 68.671 316 96 2 1 313 1 316 4.03e-162 454
MS.gene030521.t1 AT5G61830 68.671 316 96 2 1 313 1 316 4.03e-162 454
MS.gene030521.t1 AT3G59710 42.807 285 148 6 25 305 7 280 1.25e-75 234
MS.gene030521.t1 AT3G59710 42.908 282 146 6 28 305 39 309 2.25e-74 231
MS.gene030521.t1 AT3G59710 42.254 284 149 6 26 305 18 290 4.22e-73 228
MS.gene030521.t1 AT3G61220 41.077 297 141 8 39 312 9 294 7.24e-63 201
MS.gene030521.t1 AT3G61220 41.077 297 141 8 39 312 16 301 1.40e-62 201
MS.gene030521.t1 AT3G61220 41.077 297 141 8 39 312 40 325 3.25e-62 201
MS.gene030521.t1 AT2G24190 39.057 297 147 7 39 312 9 294 6.56e-61 196
MS.gene030521.t1 AT2G24190 39.057 297 147 7 39 312 14 299 8.90e-61 196
MS.gene030521.t1 AT1G01800 37.874 301 151 7 38 313 6 295 6.40e-58 188
MS.gene030521.t1 AT1G01800 37.705 183 103 3 131 313 89 260 2.85e-32 120
MS.gene030521.t1 AT5G50130 28.296 311 160 15 27 312 27 299 6.04e-19 86.3
MS.gene030521.t1 AT5G50130 29.054 296 148 15 41 312 8 265 4.16e-17 80.5
MS.gene030521.t1 AT5G50130 28.956 297 148 15 41 312 8 266 5.80e-17 80.1
MS.gene030521.t1 AT5G50130 29.297 256 134 12 27 273 27 244 5.92e-17 79.3
MS.gene030521.t1 AT5G50130 29.183 257 134 12 27 273 27 245 7.25e-17 79.3
MS.gene030521.t1 AT5G50130 29.297 256 134 12 27 273 27 244 2.79e-16 78.6
MS.gene030521.t1 AT5G50130 29.183 257 134 12 27 273 27 245 3.94e-16 78.2
MS.gene030521.t1 AT4G23420 29.352 293 145 11 39 307 49 303 3.82e-15 75.5
MS.gene030521.t1 AT4G23420 29.010 293 146 11 39 307 32 286 1.39e-14 73.6
MS.gene030521.t1 AT4G23420 29.010 293 146 11 39 307 32 286 1.39e-14 73.6
MS.gene030521.t1 AT5G50130 30.165 242 122 12 41 273 8 211 3.84e-14 72.0
MS.gene030521.t1 AT5G50130 30.041 243 122 12 41 273 8 212 4.74e-14 71.6
MS.gene030521.t1 AT4G23430 27.304 293 151 11 39 307 32 286 4.10e-12 66.2
MS.gene030521.t1 AT4G23430 26.621 293 151 11 39 307 32 284 4.61e-12 66.2
MS.gene030521.t1 AT4G23420 35.374 147 82 4 39 176 32 174 2.08e-11 63.5
MS.gene030521.t1 AT4G23420 35.374 147 82 4 39 176 32 174 2.49e-11 63.5
MS.gene030521.t1 AT2G29350 30.233 172 108 3 28 187 9 180 9.89e-11 61.2
MS.gene030521.t1 AT2G29350 30.769 169 105 3 28 184 9 177 9.97e-11 61.6

Find 66 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGGGATTAATTTCAATTT+TGG 0.065690 4.2:-7735184 MS.gene030521:CDS
GTTATTGATACAAATTATTT+TGG 0.142059 4.2:-7735130 MS.gene030521:CDS
TAATGCTTATACAAGATTTA+TGG 0.146212 4.2:-7734671 MS.gene030521:CDS
TAATTGCTTGTTCAGGAATA+AGG 0.220393 4.2:+7734509 None:intergenic
CCAATTCTCTGAGTGGTTAA+AGG 0.248625 4.2:-7735366 MS.gene030521:CDS
GCAGCGGAAGCCTTCATTAA+TGG 0.259600 4.2:+7735079 None:intergenic
ACTGGTGGAAATAGAGGAAT+TGG 0.276887 4.2:-7735545 MS.gene030521:CDS
CTATGGTGGCTTAAATATTC+TGG 0.279719 4.2:-7735339 MS.gene030521:intron
CCTTTAACCACTCAGAGAAT+TGG 0.295244 4.2:+7735366 None:intergenic
AACCTTTGGTGATCAGAATA+AGG 0.298129 4.2:+7735902 None:intergenic
ATTCCTGAACAAGCAATTAC+AGG 0.309492 4.2:-7734505 MS.gene030521:CDS
TGTTGGCGTTGAATCAATTA+AGG 0.322106 4.2:-7735456 MS.gene030521:CDS
CATATATAGGTGGTGGTCTA+AGG 0.322319 4.2:-7735585 MS.gene030521:intron
GTTGAGGATGGTGCTGATAC+TGG 0.341232 4.2:-7734544 MS.gene030521:CDS
TTTCCTGTAATTGCTTGTTC+AGG 0.345287 4.2:+7734502 None:intergenic
GAAACAATTGCTGTGGTTAC+TGG 0.356872 4.2:-7735563 MS.gene030521:CDS
CATAGCTTCAATCATACGTT+TGG 0.371958 4.2:+7735105 None:intergenic
TGGGTTAAAACAGCTCTAAC+AGG 0.375689 4.2:-7734586 MS.gene030521:CDS
CTTTAACCACTCAGAGAATT+GGG 0.379720 4.2:+7735367 None:intergenic
TCGCGTCTAGGTCGATTAAA+TGG 0.386837 4.2:-7735031 MS.gene030521:CDS
GAAATTTCAAGACAACTTGC+TGG 0.389279 4.2:-7735518 MS.gene030521:CDS
TTTATTAATTGTTATTGTCC+TGG 0.406931 4.2:-7734610 MS.gene030521:CDS
AATTGCTTGTTCAGGAATAA+GGG 0.408591 4.2:+7734510 None:intergenic
TAATTGTTATTGTCCTGGTT+GGG 0.411270 4.2:-7734605 MS.gene030521:CDS
ATGGTGCTGATACTGGAGTT+TGG 0.414592 4.2:-7734537 MS.gene030521:CDS
TTAATTGTTATTGTCCTGGT+TGG 0.424909 4.2:-7734606 MS.gene030521:CDS
TTAATGAAGGCTTCCGCTGC+TGG 0.440633 4.2:-7735076 MS.gene030521:CDS
AGAGGATGGAACTTGGAAAT+CGG 0.442067 4.2:-7734743 MS.gene030521:CDS
GAGTGGTTAAAGGAAAACTA+TGG 0.450433 4.2:-7735356 MS.gene030521:CDS
ACCTTTGGTGATCAGAATAA+GGG 0.466845 4.2:+7735903 None:intergenic
ATCAAGTAGAGGATGGAACT+TGG 0.475460 4.2:-7734750 MS.gene030521:CDS
AGCTATGATTCCATTAATGA+AGG 0.476938 4.2:-7735089 MS.gene030521:CDS
CTGGTGGAAATAGAGGAATT+GGG 0.480536 4.2:-7735544 MS.gene030521:CDS
GAGGATGGAACTTGGAAATC+GGG 0.486517 4.2:-7734742 MS.gene030521:CDS
TCAAGACAACTTGCTGGTCA+TGG 0.495981 4.2:-7735512 MS.gene030521:CDS
TTCAGTTGAAAATGCTCATA+CGG 0.503882 4.2:-7735152 MS.gene030521:CDS
CTTTCAGAGGAACTTATTGA+CGG 0.507419 4.2:-7734793 MS.gene030521:CDS
TATTTGCAGGTAAACAATGC+AGG 0.514024 4.2:-7735202 MS.gene030521:intron
GTAAATGTTAGCTCGCGTCT+AGG 0.519334 4.2:-7735043 MS.gene030521:CDS
ACAGCTCTAACAGGTTATGC+AGG 0.530819 4.2:-7734577 MS.gene030521:CDS
GAGTAGTCGGTAAATATTCG+AGG 0.558560 4.2:+7734712 None:intergenic
TTTCTACATCAAGTAGAGGA+TGG 0.561046 4.2:-7734757 MS.gene030521:CDS
GAACTTGGAAATCGGGAGGA+TGG 0.561877 4.2:-7734735 MS.gene030521:CDS
TCAATTAAGGTCTTGCAAGA+AGG 0.563494 4.2:-7735443 MS.gene030521:CDS
ACAACAAGAGATGCTAATGT+TGG 0.566475 4.2:-7735473 MS.gene030521:CDS
TGCAGGAAGTGTCTCAGTTG+AGG 0.575602 4.2:-7734560 MS.gene030521:CDS
ATTTGCAGGTAAACAATGCA+GGG 0.577061 4.2:-7735201 MS.gene030521:intron
TCCCTTATTCTGATCACCAA+AGG 0.577104 4.2:-7735904 MS.gene030521:intron
TAGTTTCGACAACGAGTAGT+CGG 0.587214 4.2:+7734699 None:intergenic
CCACTCAGAGAATTGGGTGA+TGG 0.590667 4.2:+7735373 None:intergenic
ATGAAGGCTTCCGCTGCTGG+TGG 0.593984 4.2:-7735073 MS.gene030521:CDS
ATTAAGGTCTTGCAAGAAGG+TGG 0.604917 4.2:-7735440 MS.gene030521:CDS
TACAATACGACCACCAGCAG+CGG 0.610026 4.2:+7735063 None:intergenic
AAACTTTCAGATAGACCTGA+GGG 0.619922 4.2:-7734643 MS.gene030521:CDS
GTGGTTACTGGTGGAAATAG+AGG 0.620891 4.2:-7735551 MS.gene030521:CDS
GTCTAAGGAAACAATTGCTG+TGG 0.624623 4.2:-7735570 MS.gene030521:CDS
CAATGTGGATAATCTTTCAG+AGG 0.637147 4.2:-7734806 MS.gene030521:CDS
ACAATTGCTGTGGTTACTGG+TGG 0.637431 4.2:-7735560 MS.gene030521:CDS
GGAAGTGTCTCAGTTGAGGA+TGG 0.651463 4.2:-7734556 MS.gene030521:CDS
GATGGAACTTGGAAATCGGG+AGG 0.664292 4.2:-7734739 MS.gene030521:CDS
CCATCACCCAATTCTCTGAG+TGG 0.664499 4.2:-7735373 MS.gene030521:CDS
TGGTTAAAGGAAAACTATGG+TGG 0.666602 4.2:-7735353 MS.gene030521:CDS
GCAAGAAGGTGGTCTCGATG+TGG 0.670613 4.2:-7735429 MS.gene030521:CDS
TTGGTGATCAGAATAAGGGA+TGG 0.686077 4.2:+7735907 None:intergenic
GAAACTTTCAGATAGACCTG+AGG 0.686755 4.2:-7734644 MS.gene030521:CDS
GAGAGAGCAATTAAGCAATG+TGG 0.690143 4.2:-7734821 MS.gene030521:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATGTGTTAAATTTAATTTT+GGG - chr4.2:7734822-7734841 MS.gene030521:CDS 15.0%
!!! GTTATTGATACAAATTATTT+TGG - chr4.2:7735312-7735331 MS.gene030521:intron 15.0%
!!! TGTTCTTTCATTTTATAATT+AGG - chr4.2:7734583-7734602 MS.gene030521:CDS 15.0%
!! AATAGATATACATATATAGG+TGG - chr4.2:7734847-7734866 MS.gene030521:intron 20.0%
!! ATAATGTATCATATATTTGC+AGG - chr4.2:7735227-7735246 MS.gene030521:intron 20.0%
!! CTATATAATTAAGCGTATAA+TGG - chr4.2:7734726-7734745 MS.gene030521:CDS 20.0%
!! GCTAATAGATATACATATAT+AGG - chr4.2:7734844-7734863 MS.gene030521:CDS 20.0%
!! TAATGCTTATACAAGATTTA+TGG - chr4.2:7735771-7735790 MS.gene030521:intron 20.0%
!!! CGCTTAATTATATAGTTTTT+AGG + chr4.2:7734721-7734740 None:intergenic 20.0%
!!! GCATGTGTTAAATTTAATTT+TGG - chr4.2:7734821-7734840 MS.gene030521:CDS 20.0%
!!! TTTATTAATTGTTATTGTCC+TGG - chr4.2:7735832-7735851 MS.gene030521:intron 20.0%
! ATGAATAATGTTTCAGAGAT+TGG - chr4.2:7735585-7735604 MS.gene030521:intron 25.0%
! GCAAGTTTATTAAGCAAATA+TGG - chr4.2:7735125-7735144 MS.gene030521:CDS 25.0%
! TAGAAATTAAATGCAACCTT+TGG + chr4.2:7734557-7734576 None:intergenic 25.0%
! TCTTATTAAACTATGTGATC+CGG + chr4.2:7734668-7734687 None:intergenic 25.0%
!! CAGGGATTAATTTCAATTTT+GGG - chr4.2:7735259-7735278 MS.gene030521:intron 25.0%
!! TAATTTTCTACATCAAGTAG+AGG - chr4.2:7735681-7735700 MS.gene030521:intron 25.0%
AATTCAGTTATCTTGCAACA+AGG + chr4.2:7735177-7735196 None:intergenic 30.0%
AATTGCTTGTTCAGGAATAA+GGG + chr4.2:7735935-7735954 None:intergenic 30.0%
ACGAGTTTAATTATGTCACA+CGG - chr4.2:7735459-7735478 MS.gene030521:CDS 30.0%
AGATATACATATATAGGTGG+TGG - chr4.2:7734850-7734869 MS.gene030521:intron 30.0%
AGCTATGATTCCATTAATGA+AGG - chr4.2:7735353-7735372 MS.gene030521:CDS 30.0%
GGATCACATAGTTTAATAAG+AGG - chr4.2:7734667-7734686 MS.gene030521:CDS 30.0%
TAATTGCTTGTTCAGGAATA+AGG + chr4.2:7735936-7735955 None:intergenic 30.0%
TTATCTCATCCAAACACTAT+TGG + chr4.2:7734644-7734663 None:intergenic 30.0%
TTCAACTATCCAATAGTGTT+TGG - chr4.2:7734632-7734651 MS.gene030521:CDS 30.0%
TTCAGTTGAAAATGCTCATA+CGG - chr4.2:7735290-7735309 MS.gene030521:intron 30.0%
! ATAAAAATCTTTTCACCCTC+AGG + chr4.2:7735817-7735836 None:intergenic 30.0%
! GCAGGGATTAATTTCAATTT+TGG - chr4.2:7735258-7735277 MS.gene030521:intron 30.0%
! TAATTGTTATTGTCCTGGTT+GGG - chr4.2:7735837-7735856 MS.gene030521:intron 30.0%
! TTAATTGTTATTGTCCTGGT+TGG - chr4.2:7735836-7735855 MS.gene030521:intron 30.0%
!! AAGAGGTGTTGAAATCAAAT+TGG - chr4.2:7734684-7734703 MS.gene030521:CDS 30.0%
AAACTTTCAGATAGACCTGA+GGG - chr4.2:7735799-7735818 MS.gene030521:intron 35.0%
ACAACAAGAGATGCTAATGT+TGG - chr4.2:7734969-7734988 MS.gene030521:intron 35.0%
AGTGTTTGGATGAGATAAAC+CGG - chr4.2:7734646-7734665 MS.gene030521:CDS 35.0%
ATTCCTGAACAAGCAATTAC+AGG - chr4.2:7735937-7735956 MS.gene030521:CDS 35.0%
ATTTGCAGGTAAACAATGCA+GGG - chr4.2:7735241-7735260 MS.gene030521:intron 35.0%
CAATGTGGATAATCTTTCAG+AGG - chr4.2:7735636-7735655 MS.gene030521:intron 35.0%
CATAGCTTCAATCATACGTT+TGG + chr4.2:7735340-7735359 None:intergenic 35.0%
CTATGGTGGCTTAAATATTC+TGG - chr4.2:7735103-7735122 MS.gene030521:CDS 35.0%
CTTTAACCACTCAGAGAATT+GGG + chr4.2:7735078-7735097 None:intergenic 35.0%
CTTTCAGAGGAACTTATTGA+CGG - chr4.2:7735649-7735668 MS.gene030521:intron 35.0%
GAAATTTCAAGACAACTTGC+TGG - chr4.2:7734924-7734943 MS.gene030521:intron 35.0%
GAGTGGTTAAAGGAAAACTA+TGG - chr4.2:7735086-7735105 MS.gene030521:CDS 35.0%
TATTTGCAGGTAAACAATGC+AGG - chr4.2:7735240-7735259 MS.gene030521:intron 35.0%
TCAATTAAGGTCTTGCAAGA+AGG - chr4.2:7734999-7735018 MS.gene030521:intron 35.0%
TGGTTAAAGGAAAACTATGG+TGG - chr4.2:7735089-7735108 MS.gene030521:CDS 35.0%
TTTCCTGTAATTGCTTGTTC+AGG + chr4.2:7735943-7735962 None:intergenic 35.0%
TTTCTACATCAAGTAGAGGA+TGG - chr4.2:7735685-7735704 MS.gene030521:intron 35.0%
! AACCTTTGGTGATCAGAATA+AGG + chr4.2:7734543-7734562 None:intergenic 35.0%
! ACCTTTGGTGATCAGAATAA+GGG + chr4.2:7734542-7734561 None:intergenic 35.0%
! TGTTGGCGTTGAATCAATTA+AGG - chr4.2:7734986-7735005 MS.gene030521:intron 35.0%
ACTGGTGGAAATAGAGGAAT+TGG - chr4.2:7734897-7734916 MS.gene030521:intron 40.0%
AGAGGATGGAACTTGGAAAT+CGG - chr4.2:7735699-7735718 MS.gene030521:intron 40.0%
ATCAAGTAGAGGATGGAACT+TGG - chr4.2:7735692-7735711 MS.gene030521:intron 40.0%
ATTAAGGTCTTGCAAGAAGG+TGG - chr4.2:7735002-7735021 MS.gene030521:intron 40.0%
CCAATTCTCTGAGTGGTTAA+AGG - chr4.2:7735076-7735095 MS.gene030521:CDS 40.0%
CCTTTAACCACTCAGAGAAT+TGG + chr4.2:7735079-7735098 None:intergenic 40.0%
CTGGTGGAAATAGAGGAATT+GGG - chr4.2:7734898-7734917 MS.gene030521:intron 40.0%
GAAACAATTGCTGTGGTTAC+TGG - chr4.2:7734879-7734898 MS.gene030521:intron 40.0%
GAAACTTTCAGATAGACCTG+AGG - chr4.2:7735798-7735817 MS.gene030521:intron 40.0%
GAGAGAGCAATTAAGCAATG+TGG - chr4.2:7735621-7735640 MS.gene030521:intron 40.0%
GAGTAGTCGGTAAATATTCG+AGG + chr4.2:7735733-7735752 None:intergenic 40.0%
GTCTAAGGAAACAATTGCTG+TGG - chr4.2:7734872-7734891 MS.gene030521:intron 40.0%
TAGTTTCGACAACGAGTAGT+CGG + chr4.2:7735746-7735765 None:intergenic 40.0%
TCCCTTATTCTGATCACCAA+AGG - chr4.2:7734538-7734557 MS.gene030521:CDS 40.0%
! CATATATAGGTGGTGGTCTA+AGG - chr4.2:7734857-7734876 MS.gene030521:intron 40.0%
! TGGGTTAAAACAGCTCTAAC+AGG - chr4.2:7735856-7735875 MS.gene030521:intron 40.0%
! TTGGTGATCAGAATAAGGGA+TGG + chr4.2:7734538-7734557 None:intergenic 40.0%
!! CGCAAGAGATATCACTTTTG+AGG - chr4.2:7734511-7734530 MS.gene030521:CDS 40.0%
ACAATTGCTGTGGTTACTGG+TGG - chr4.2:7734882-7734901 MS.gene030521:intron 45.0%
GAGGATGGAACTTGGAAATC+GGG - chr4.2:7735700-7735719 MS.gene030521:intron 45.0%
GTAAATGTTAGCTCGCGTCT+AGG - chr4.2:7735399-7735418 MS.gene030521:CDS 45.0%
GTGGTTACTGGTGGAAATAG+AGG - chr4.2:7734891-7734910 MS.gene030521:intron 45.0%
TCGCGTCTAGGTCGATTAAA+TGG - chr4.2:7735411-7735430 MS.gene030521:CDS 45.0%
! ACAGCTCTAACAGGTTATGC+AGG - chr4.2:7735865-7735884 MS.gene030521:intron 45.0%
!! ATGGTGCTGATACTGGAGTT+TGG - chr4.2:7735905-7735924 MS.gene030521:CDS 45.0%
!! TCAAGACAACTTGCTGGTCA+TGG - chr4.2:7734930-7734949 MS.gene030521:intron 45.0%
!!! AGAGCTGTTTTAACCCAACC+AGG + chr4.2:7735853-7735872 None:intergenic 45.0%
CCACTCAGAGAATTGGGTGA+TGG + chr4.2:7735072-7735091 None:intergenic 50.0%
CCATCACCCAATTCTCTGAG+TGG - chr4.2:7735069-7735088 MS.gene030521:CDS 50.0%
GAACTTGGAAATCGGGAGGA+TGG - chr4.2:7735707-7735726 MS.gene030521:intron 50.0%
GATGGAACTTGGAAATCGGG+AGG - chr4.2:7735703-7735722 MS.gene030521:intron 50.0%
GCAGCGGAAGCCTTCATTAA+TGG + chr4.2:7735366-7735385 None:intergenic 50.0%
TACAATACGACCACCAGCAG+CGG + chr4.2:7735382-7735401 None:intergenic 50.0%
TTAATGAAGGCTTCCGCTGC+TGG - chr4.2:7735366-7735385 MS.gene030521:CDS 50.0%
!! GGAAGTGTCTCAGTTGAGGA+TGG - chr4.2:7735886-7735905 MS.gene030521:intron 50.0%
!! GTTGAGGATGGTGCTGATAC+TGG - chr4.2:7735898-7735917 MS.gene030521:intron 50.0%
!! TGCAGGAAGTGTCTCAGTTG+AGG - chr4.2:7735882-7735901 MS.gene030521:intron 50.0%
GCAAGAAGGTGGTCTCGATG+TGG - chr4.2:7735013-7735032 MS.gene030521:intron 55.0%
ATGAAGGCTTCCGCTGCTGG+TGG - chr4.2:7735369-7735388 MS.gene030521:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 7734468 7735996 7734468 ID=MS.gene030521
chr4.2 mRNA 7734468 7735996 7734468 ID=MS.gene030521.t1;Parent=MS.gene030521
chr4.2 exon 7735905 7735996 7735905 ID=MS.gene030521.t1.exon1;Parent=MS.gene030521.t1
chr4.2 CDS 7735905 7735996 7735905 ID=cds.MS.gene030521.t1;Parent=MS.gene030521.t1
chr4.2 exon 7735340 7735598 7735340 ID=MS.gene030521.t1.exon2;Parent=MS.gene030521.t1
chr4.2 CDS 7735340 7735598 7735340 ID=cds.MS.gene030521.t1;Parent=MS.gene030521.t1
chr4.2 exon 7735021 7735215 7735021 ID=MS.gene030521.t1.exon3;Parent=MS.gene030521.t1
chr4.2 CDS 7735021 7735215 7735021 ID=cds.MS.gene030521.t1;Parent=MS.gene030521.t1
chr4.2 exon 7734468 7734863 7734468 ID=MS.gene030521.t1.exon4;Parent=MS.gene030521.t1
chr4.2 CDS 7734468 7734863 7734468 ID=cds.MS.gene030521.t1;Parent=MS.gene030521.t1
Gene Sequence

>MS.gene030521

ATGGGGCACAAAGAAAAATCAAAAGAGAAAAAAGATAAGAGATCGCAAGAGATATCACTTTTGAGGACCATCCCTTATTCTGATCACCAAAGGTTGCATTTAATTTCTAGCTATATGTTCTTTCATTTTATAATTAGGTGTAATTTGTGTGAGTTTAAATATAATTCAACTATCCAATAGTGTTTGGATGAGATAAACCGGATCACATAGTTTAATAAGAGGTGTTGAAATCAAATTGGAAATGCAGAAGCCTAAAAACTATATAATTAAGCGTATAATGGCATTGATTTTTGAATCAATAGTTAACAATCATTAATTGATGAAATTAATGAATACTAGTATATTTCTAACTAGCATGTGTTAAATTTAATTTTGGGCTAATAGATATACATATATAGGTGGTGGTCTAAGGAAACAATTGCTGTGGTTACTGGTGGAAATAGAGGAATTGGGTTTGAAATTTCAAGACAACTTGCTGGTCATGGAGTAACTGTAATATTAACAACAAGAGATGCTAATGTTGGCGTTGAATCAATTAAGGTCTTGCAAGAAGGTGGTCTCGATGTGGCATGTCATCAACTTGATGTATTAGATTCTTCATCCATCACCCAATTCTCTGAGTGGTTAAAGGAAAACTATGGTGGCTTAAATATTCTGGCAAGTTTATTAAGCAAATATGGTTAATTTCTAGCTTTCTTTCTTACAACCTTGTTGCAAGATAACTGAATTAAATTAAATGTCTGCATATGTATCTAAACAATAATGTATCATATATTTGCAGGTAAACAATGCAGGGATTAATTTCAATTTTGGGTCTGATAATTCAGTTGAAAATGCTCATACGGTTATTGATACAAATTATTTTGGAACCAAACGTATGATTGAAGCTATGATTCCATTAATGAAGGCTTCCGCTGCTGGTGGTCGTATTGTAAATGTTAGCTCGCGTCTAGGTCGATTAAATGGAAAACGAAATGTAAGTACTATATACACGAGTTTAATTATGTCACACGGTCAATTTAAAAAGTTTTATACTGTTAGCGTATCATAATCAATCATATGTGCAACTTTAGAATTGACTATGATTAAATTAAACATTTTTAATGATATGATAATTATGAATAATGTTTCAGAGATTGGAGAATGATGATTTGAGAGAGCAATTAAGCAATGTGGATAATCTTTCAGAGGAACTTATTGACGGTGTTGTGACTAATTTTCTACATCAAGTAGAGGATGGAACTTGGAAATCGGGAGGATGGCCTCGAATATTTACCGACTACTCGTTGTCGAAACTAGCTGTTAATGCTTATACAAGATTTATGGCAAAGAAACTTTCAGATAGACCTGAGGGTGAAAAGATTTTTATTAATTGTTATTGTCCTGGTTGGGTTAAAACAGCTCTAACAGGTTATGCAGGAAGTGTCTCAGTTGAGGATGGTGCTGATACTGGAGTTTGGCTTTCCCTTATTCCTGAACAAGCAATTACAGGAAAGTTTTTTGCTGAGAGAAGAGAAATCAACTTCTAA
Protein sequence

>MS.gene030521.t1

MGHKEKSKEKKDKRSQEISLLRTIPYSDHQRWWSKETIAVVTGGNRGIGFEISRQLAGHGVTVILTTRDANVGVESIKVLQEGGLDVACHQLDVLDSSSITQFSEWLKENYGGLNILVNNAGINFNFGSDNSVENAHTVIDTNYFGTKRMIEAMIPLMKASAAGGRIVNVSSRLGRLNGKRNRLENDDLREQLSNVDNLSEELIDGVVTNFLHQVEDGTWKSGGWPRIFTDYSLSKLAVNAYTRFMAKKLSDRPEGEKIFINCYCPGWVKTALTGYAGSVSVEDGADTGVWLSLIPEQAITGKFFAERREINF