AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene03059

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03059.t1 MTR_2g030390 96.662 659 21 1 1 659 1 658 0.0 1254
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03059.t1 AT3G24080 45.250 579 268 13 5 555 8 565 1.30e-108 342
MS.gene03059.t1 AT3G24080 45.250 579 268 13 5 555 8 565 1.37e-108 342
MS.gene03059.t1 AT3G24080 45.250 579 268 13 5 555 8 565 1.45e-108 342
MS.gene03059.t1 AT3G24080 45.250 579 268 13 5 555 8 565 1.80e-108 342

Find 114 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACCTGTCTTCTCCTTTA+AGG 0.067645 2.1:+60859646 None:intergenic
ATTGAGGAGGGACCAGATTT+TGG 0.223663 2.1:-60859806 MS.gene03059:CDS
TAAGCTTCAATTCCTCTTCT+TGG 0.247682 2.1:+60858622 None:intergenic
ATTCTTTGATGCTTTGATTA+AGG 0.251168 2.1:-60859975 MS.gene03059:CDS
ATCATTCTGTCATATTCCTC+TGG 0.284675 2.1:+60859137 None:intergenic
CCACATTCATCCCAATCTTT+AGG 0.290694 2.1:+60858993 None:intergenic
GATCCTTCGTGCAGCAAGTT+TGG 0.295537 2.1:-60858559 MS.gene03059:CDS
AAAAGCAAACACAGCAAGTT+TGG 0.300133 2.1:-60858445 MS.gene03059:CDS
GAAGCGTAAAACTGCACTTT+TGG 0.321590 2.1:-60858838 MS.gene03059:CDS
TGAGGAATTTGAGGAGAAAC+TGG 0.339212 2.1:-60859603 MS.gene03059:CDS
TACTTGGGCTTCCTAAAGAT+TGG 0.346122 2.1:-60859004 MS.gene03059:CDS
TGAGATGGAAATTGAGAGGC+AGG 0.355422 2.1:-60859450 MS.gene03059:CDS
AAGCCAAGAGAAGGGAAAAC+AGG 0.359507 2.1:-60858314 MS.gene03059:CDS
ATCCTTCGTGCAGCAAGTTT+GGG 0.366521 2.1:-60858558 MS.gene03059:CDS
AAAACAAAACCTAACAGATT+TGG 0.379299 2.1:-60858723 MS.gene03059:CDS
GAGTGAAGATGAGGAATTTG+AGG 0.381021 2.1:-60859612 MS.gene03059:CDS
TGCTCGTAAGGTGGAGGGTT+CGG 0.395725 2.1:-60859375 MS.gene03059:CDS
GACTTGCTAGAATCAGCCTT+GGG 0.399472 2.1:+60858402 None:intergenic
TCCTCTTTATCACCAAAATC+TGG 0.405490 2.1:+60859794 None:intergenic
GTATCCAGGCCAAATCTGTT+AGG 0.416690 2.1:+60858714 None:intergenic
TAGATTATGAGGACACAGTT+GGG 0.421516 2.1:-60858776 MS.gene03059:CDS
ACTTGGGCTTCCTAAAGATT+GGG 0.423740 2.1:-60859003 MS.gene03059:CDS
TCATCGATCAATAGTATCTC+TGG 0.430675 2.1:+60858690 None:intergenic
AGCAGCAGAAAAGGATGGCT+TGG 0.438918 2.1:-60859687 MS.gene03059:CDS
TTCAATTCCTCTTCTTGGTA+AGG 0.450588 2.1:+60858627 None:intergenic
CTTCCGACTACTACCTTCCT+CGG 0.452952 2.1:+60858863 None:intergenic
GATACTATTGATCGATGATA+AGG 0.458126 2.1:-60858685 MS.gene03059:CDS
GAGAGAGGCAATACGACAAA+AGG 0.459308 2.1:-60859303 MS.gene03059:CDS
AGATCCTGTTCTTAAGCAAA+AGG 0.465168 2.1:-60859942 MS.gene03059:CDS
GAGTCGAGACTTAAAGCATA+TGG 0.468288 2.1:-60858273 MS.gene03059:CDS
GTCTACTGCAGAATTAGAAA+AGG 0.471726 2.1:-60859168 MS.gene03059:CDS
CTAATTCTGCAGTAGACAAA+GGG 0.472024 2.1:+60859174 None:intergenic
TCATTCTGTCATATTCCTCT+GGG 0.472452 2.1:+60859138 None:intergenic
TGAGCAAGAGGAGTTGAAAC+AGG 0.482808 2.1:-60859720 MS.gene03059:CDS
AATGAGAAAGGTATATCAAA+TGG 0.485679 2.1:-60859764 MS.gene03059:CDS
AAATCCAGGGGATAGAGTGC+TGG 0.488077 2.1:-60859402 MS.gene03059:CDS
TACTAGTGATGATGATCTCA+TGG 0.493040 2.1:-60858913 MS.gene03059:CDS
TTTCAACTCTAAGAGTGATA+AGG 0.498953 2.1:-60859999 MS.gene03059:CDS
GATGAATGTGGATCTGATGG+TGG 0.500163 2.1:-60858981 MS.gene03059:CDS
GGGTCATGCTCGTAAGGTGG+AGG 0.503285 2.1:-60859381 MS.gene03059:CDS
TGATGAGAAGAGTAAAGATA+AGG 0.513195 2.1:-60859873 MS.gene03059:CDS
GCAGCAGAAAAGGATGGCTT+GGG 0.515479 2.1:-60859686 MS.gene03059:CDS
AGAGATTTCAGAAGATGAGA+TGG 0.521290 2.1:-60859465 MS.gene03059:CDS
AAAACCTAACAGATTTGGCC+TGG 0.522228 2.1:-60858718 MS.gene03059:CDS
GAGGATGAAACAAATGAGAA+AGG 0.523006 2.1:-60859776 MS.gene03059:CDS
CTGAAAGCAGCAGAAAAGGA+TGG 0.523891 2.1:-60859692 MS.gene03059:CDS
CTCACCTTAAAGGAGAAGAC+AGG 0.529520 2.1:-60859650 MS.gene03059:CDS
CAAGGTAGAGAGTGAAGATG+AGG 0.530933 2.1:-60859621 MS.gene03059:CDS
GACTTATGCTGATGAGCAAG+AGG 0.531868 2.1:-60859732 MS.gene03059:CDS
AAAGAGCAAAGAGGAGAGAG+AGG 0.532174 2.1:-60859318 MS.gene03059:CDS
ATGAATGTGGATCTGATGGT+GGG 0.532471 2.1:-60858980 MS.gene03059:CDS
GAAAGCAAGACAAATGATGA+TGG 0.538249 2.1:-60858814 MS.gene03059:CDS
ACACAGAAGAATCAAAATCA+AGG 0.538980 2.1:-60858338 MS.gene03059:CDS
AGTGCTGGGTCATGCTCGTA+AGG 0.540823 2.1:-60859387 MS.gene03059:CDS
AGATTATGAGGACACAGTTG+GGG 0.541091 2.1:-60858775 MS.gene03059:CDS
TAGTGAGGGTGAAGAAGACA+TGG 0.541771 2.1:-60859057 MS.gene03059:CDS
TCTAATTCTGCAGTAGACAA+AGG 0.542118 2.1:+60859173 None:intergenic
TTAGATTATGAGGACACAGT+TGG 0.543563 2.1:-60858777 MS.gene03059:CDS
GTTAACTTCAAACAATGTTG+TGG 0.543762 2.1:-60858475 MS.gene03059:CDS
TGACCCAGCACTCTATCCCC+TGG 0.546475 2.1:+60859398 None:intergenic
ATAGTATCTCTGGAGTATCC+AGG 0.549189 2.1:+60858700 None:intergenic
TGACTTGCTAGAATCAGCCT+TGG 0.550613 2.1:+60858401 None:intergenic
AAAGATACATGCTGAAGATG+AGG 0.550832 2.1:-60858590 MS.gene03059:CDS
GGCAAAGCATTTGATTGAGG+AGG 0.551984 2.1:-60859819 MS.gene03059:CDS
CTCATCAAACAGTTGTGTTG+TGG 0.554487 2.1:-60858376 MS.gene03059:CDS
ACTTGCTCCTTACCAAGAAG+AGG 0.555311 2.1:-60858634 MS.gene03059:CDS
ACTATTTCAAGAACAAAATG+TGG 0.558440 2.1:-60859535 MS.gene03059:CDS
AGGAAGGTAGTAGTCGGAAG+AGG 0.560258 2.1:-60858860 MS.gene03059:CDS
TTCCGACTACTACCTTCCTC+GGG 0.560833 2.1:+60858864 None:intergenic
AATCAAGGAAAGCCAAGAGA+AGG 0.564095 2.1:-60858323 MS.gene03059:CDS
TATTGGTTCACCTTCACACT+CGG 0.566868 2.1:-60860071 MS.gene03059:CDS
AATCCAGGGGATAGAGTGCT+GGG 0.568166 2.1:-60859401 MS.gene03059:CDS
AAAGGATGGCTTGGGAGATG+AGG 0.568697 2.1:-60859678 MS.gene03059:CDS
ATCAAGGAAAGCCAAGAGAA+GGG 0.568922 2.1:-60858322 MS.gene03059:CDS
TGGGATGAATGTGGATCTGA+TGG 0.570198 2.1:-60858984 MS.gene03059:CDS
GGCAATACGACAAAAGGAAA+GGG 0.576585 2.1:-60859297 MS.gene03059:CDS
GCAAAGCATTTGATTGAGGA+GGG 0.577160 2.1:-60859818 MS.gene03059:CDS
AGGCAATACGACAAAAGGAA+AGG 0.579482 2.1:-60859298 MS.gene03059:CDS
CATGCTGAAGATGAGGGCTA+AGG 0.580350 2.1:-60858583 MS.gene03059:CDS
AAGATACATGCTGAAGATGA+GGG 0.584857 2.1:-60858589 MS.gene03059:CDS
ACGACAAAAGGAAAGGGATG+AGG 0.586281 2.1:-60859291 MS.gene03059:CDS
TTATGAGGACACAGTTGGGG+GGG 0.587460 2.1:-60858772 MS.gene03059:CDS
CCTAAAGATTGGGATGAATG+TGG 0.587753 2.1:-60858993 MS.gene03059:CDS
AAAGAGGACATTCCCGAGGA+AGG 0.588781 2.1:-60858876 MS.gene03059:CDS
TATGCTTTAAGTCTCGACTC+TGG 0.591074 2.1:+60858276 None:intergenic
AAAAGATAAAGAAGATTGCA+GGG 0.591451 2.1:-60859217 MS.gene03059:CDS
GCTGGGTCATGCTCGTAAGG+TGG 0.591483 2.1:-60859384 MS.gene03059:CDS
AACTTCAAACAATGTTGTGG+AGG 0.597494 2.1:-60858472 MS.gene03059:CDS
GAGAAAGGTATATCAAATGG+TGG 0.598159 2.1:-60859761 MS.gene03059:CDS
GGAGAAGACAGGTGAAGACA+AGG 0.599497 2.1:-60859639 MS.gene03059:CDS
AGCCAAGAGAAGGGAAAACA+GGG 0.602506 2.1:-60858313 MS.gene03059:CDS
GGTCATGCTCGTAAGGTGGA+GGG 0.605836 2.1:-60859380 MS.gene03059:CDS
GGTGGCAAAGCATTTGATTG+AGG 0.605973 2.1:-60859822 MS.gene03059:CDS
CACAACACAACTGTTTGATG+AGG 0.608834 2.1:+60858377 None:intergenic
GATTATGAGGACACAGTTGG+GGG 0.611884 2.1:-60858774 MS.gene03059:CDS
GATGCAAGAGATACAAGAGA+AGG 0.616907 2.1:-60859243 MS.gene03059:CDS
AGTGATGATGATCTCATGGA+AGG 0.617533 2.1:-60858909 MS.gene03059:CDS
GAAGATAAATAAGAAGCCCA+AGG 0.619096 2.1:-60858418 MS.gene03059:CDS
TCATCATCTTCCGAGTGTGA+AGG 0.624572 2.1:+60860061 None:intergenic
TTCCCGAGGAAGGTAGTAGT+CGG 0.625706 2.1:-60858866 MS.gene03059:CDS
AAGATGAGATGGAAATTGAG+AGG 0.629773 2.1:-60859454 MS.gene03059:CDS
ATTATGAGGACACAGTTGGG+GGG 0.631668 2.1:-60858773 MS.gene03059:CDS
TGCGAAGTATTATAACGAAG+AGG 0.635980 2.1:-60859099 MS.gene03059:CDS
CTCAAATATCAAGATAGACG+AGG 0.643202 2.1:-60860170 MS.gene03059:CDS
TACCCAAACTTGCTGCACGA+AGG 0.643872 2.1:+60858556 None:intergenic
ATCAAACAGTTGTGTTGTGG+AGG 0.648436 2.1:-60858373 MS.gene03059:CDS
AGAGCAGAGAAAGAGCAAAG+AGG 0.649070 2.1:-60859327 MS.gene03059:CDS
AGAAAAGGAGTTTGACCCAG+AGG 0.654123 2.1:-60859153 MS.gene03059:CDS
TAGACGAGGAATATGCTCGT+AGG 0.664106 2.1:-60860156 MS.gene03059:CDS
CTATTTCAAGAACAAAATGT+GGG 0.673159 2.1:-60859534 MS.gene03059:CDS
TGAGCATAACAAGAGGCGAG+AGG 0.702904 2.1:-60860131 MS.gene03059:CDS
GTAGGTTTGAGCATAACAAG+AGG 0.707686 2.1:-60860138 MS.gene03059:CDS
GTAAGGTGGAGGGTTCGGTG+AGG 0.731572 2.1:-60859370 MS.gene03059:CDS
AATGTGGGTAGACAAGAATG+CGG 0.745968 2.1:-60859519 MS.gene03059:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTATAAATTAGATTATG+AGG - chr2.1:60859690-60859709 MS.gene03059:CDS 15.0%
!! ATGAAGAATTGAAAAAGAAA+GGG - chr2.1:60858381-60858400 MS.gene03059:CDS 20.0%
!! TATGAAGAATTGAAAAAGAA+AGG - chr2.1:60858380-60858399 MS.gene03059:CDS 20.0%
! AAAAAGAGGATGATTTACTT+GGG - chr2.1:60859458-60859477 MS.gene03059:CDS 25.0%
! AAAAAGATAAAGAAGATTGC+AGG - chr2.1:60859259-60859278 MS.gene03059:CDS 25.0%
! AAAACAAAACCTAACAGATT+TGG - chr2.1:60859754-60859773 MS.gene03059:CDS 25.0%
! AAAAGATAAAGAAGATTGCA+GGG - chr2.1:60859260-60859279 MS.gene03059:CDS 25.0%
! ACTATTTCAAGAACAAAATG+TGG - chr2.1:60858942-60858961 MS.gene03059:CDS 25.0%
! ATTCTTTGATGCTTTGATTA+AGG - chr2.1:60858502-60858521 MS.gene03059:CDS 25.0%
! CTATTTCAAGAACAAAATGT+GGG - chr2.1:60858943-60858962 MS.gene03059:CDS 25.0%
! TAAGAAGAAAAAGAGGTTAA+AGG - chr2.1:60859942-60859961 MS.gene03059:CDS 25.0%
! TGAAGAATTGAAAAAGAAAG+GGG - chr2.1:60858382-60858401 MS.gene03059:CDS 25.0%
!! AATGAGAAAGGTATATCAAA+TGG - chr2.1:60858713-60858732 MS.gene03059:CDS 25.0%
!! TTTTCAATTCTTCATAACGT+TGG + chr2.1:60858376-60858395 None:intergenic 25.0%
!!! AAATCTGTTAGGTTTTGTTT+TGG + chr2.1:60859755-60859774 None:intergenic 25.0%
!!! GAAAAAGTCAATGTTTTTGA+AGG - chr2.1:60858628-60858647 MS.gene03059:CDS 25.0%
ACACAGAAGAATCAAAATCA+AGG - chr2.1:60860139-60860158 MS.gene03059:CDS 30.0%
GAAAAAGAGGATGATTTACT+TGG - chr2.1:60859457-60859476 MS.gene03059:CDS 30.0%
GATACTATTGATCGATGATA+AGG - chr2.1:60859792-60859811 MS.gene03059:CDS 30.0%
GTTAACTTCAAACAATGTTG+TGG - chr2.1:60860002-60860021 MS.gene03059:CDS 30.0%
TGATGAGAAGAGTAAAGATA+AGG - chr2.1:60858604-60858623 MS.gene03059:CDS 30.0%
TTGAAAAAGAAAGGGGTTAT+TGG - chr2.1:60858389-60858408 MS.gene03059:CDS 30.0%
! AATGCGGAGATTTTAAATGT+TGG - chr2.1:60858974-60858993 MS.gene03059:CDS 30.0%
! ATGACTCAGAACATTTTTGA+TGG - chr2.1:60858260-60858279 MS.gene03059:CDS 30.0%
! TTTCAACTCTAAGAGTGATA+AGG - chr2.1:60858478-60858497 MS.gene03059:CDS 30.0%
!! TTAGTTTTCAGGAAAATCCA+GGG - chr2.1:60859062-60859081 MS.gene03059:CDS 30.0%
!!! AGAGTATGAAGTTAGTTTTC+AGG - chr2.1:60859051-60859070 MS.gene03059:CDS 30.0%
!!! TCATCCTCTTTTTCAAAATC+TGG + chr2.1:60859451-60859470 None:intergenic 30.0%
AAAAGCAAACACAGCAAGTT+TGG - chr2.1:60860032-60860051 MS.gene03059:CDS 35.0%
AAAGATACATGCTGAAGATG+AGG - chr2.1:60859887-60859906 MS.gene03059:CDS 35.0%
AACTTCAAACAATGTTGTGG+AGG - chr2.1:60860005-60860024 MS.gene03059:CDS 35.0%
AAGATACATGCTGAAGATGA+GGG - chr2.1:60859888-60859907 MS.gene03059:CDS 35.0%
AAGATGAGATGGAAATTGAG+AGG - chr2.1:60859023-60859042 MS.gene03059:CDS 35.0%
AGAGATTTCAGAAGATGAGA+TGG - chr2.1:60859012-60859031 MS.gene03059:CDS 35.0%
AGATCCTGTTCTTAAGCAAA+AGG - chr2.1:60858535-60858554 MS.gene03059:CDS 35.0%
ATCATTCTGTCATATTCCTC+TGG + chr2.1:60859343-60859362 None:intergenic 35.0%
CTAATTCTGCAGTAGACAAA+GGG + chr2.1:60859306-60859325 None:intergenic 35.0%
CTCAAATATCAAGATAGACG+AGG - chr2.1:60858307-60858326 MS.gene03059:CDS 35.0%
GAAAGCAAGACAAATGATGA+TGG - chr2.1:60859663-60859682 MS.gene03059:CDS 35.0%
GAAGATAAATAAGAAGCCCA+AGG - chr2.1:60860059-60860078 MS.gene03059:CDS 35.0%
GAGGATGAAACAAATGAGAA+AGG - chr2.1:60858701-60858720 MS.gene03059:CDS 35.0%
GTCTACTGCAGAATTAGAAA+AGG - chr2.1:60859309-60859328 MS.gene03059:CDS 35.0%
GTTTGGGTAAGAAGAAAAAG+AGG - chr2.1:60859935-60859954 MS.gene03059:CDS 35.0%
TAAGCTTCAATTCCTCTTCT+TGG + chr2.1:60859858-60859877 None:intergenic 35.0%
TAGATTATGAGGACACAGTT+GGG - chr2.1:60859701-60859720 MS.gene03059:CDS 35.0%
TCATCGATCAATAGTATCTC+TGG + chr2.1:60859790-60859809 None:intergenic 35.0%
TCATTCTGTCATATTCCTCT+GGG + chr2.1:60859342-60859361 None:intergenic 35.0%
TCCTCTTTATCACCAAAATC+TGG + chr2.1:60858686-60858705 None:intergenic 35.0%
TCTAATTCTGCAGTAGACAA+AGG + chr2.1:60859307-60859326 None:intergenic 35.0%
TGAGGAAAAAGACAAACACA+AGG - chr2.1:60859125-60859144 MS.gene03059:CDS 35.0%
TTAGATTATGAGGACACAGT+TGG - chr2.1:60859700-60859719 MS.gene03059:CDS 35.0%
TTCAATTCCTCTTCTTGGTA+AGG + chr2.1:60859853-60859872 None:intergenic 35.0%
! ACATCCTTTTGCTTAAGAAC+AGG + chr2.1:60858542-60858561 None:intergenic 35.0%
! GAGAAAGGTATATCAAATGG+TGG - chr2.1:60858716-60858735 MS.gene03059:CDS 35.0%
! GATTTTAAATGTTGGAGAGG+AGG - chr2.1:60858982-60859001 MS.gene03059:CDS 35.0%
! GGAGATTTTAAATGTTGGAG+AGG - chr2.1:60858979-60858998 MS.gene03059:CDS 35.0%
! TACTAGTGATGATGATCTCA+TGG - chr2.1:60859564-60859583 MS.gene03059:CDS 35.0%
! TGAGGATTTTCTCACCTTAA+AGG - chr2.1:60858817-60858836 MS.gene03059:CDS 35.0%
! TGCGAAGTATTATAACGAAG+AGG - chr2.1:60859378-60859397 MS.gene03059:CDS 35.0%
!! AATGTTTTTGAAGGATGTGG+TGG - chr2.1:60858637-60858656 MS.gene03059:CDS 35.0%
!! ACCAGATTTTGGTGATAAAG+AGG - chr2.1:60858682-60858701 MS.gene03059:CDS 35.0%
!! GAAGCCAGATTTTGAAAAAG+AGG - chr2.1:60859444-60859463 MS.gene03059:CDS 35.0%
!! GTCAATGTTTTTGAAGGATG+TGG - chr2.1:60858634-60858653 MS.gene03059:CDS 35.0%
!! TAGTTTTCAGGAAAATCCAG+GGG - chr2.1:60859063-60859082 MS.gene03059:CDS 35.0%
!! TTTTCTGAAAGCAGCAGAAA+AGG - chr2.1:60858781-60858800 MS.gene03059:CDS 35.0%
!!! GTAAGGAGCAAGTTTTTTCA+AGG + chr2.1:60859836-60859855 None:intergenic 35.0%
!!! GTTAGTTTTCAGGAAAATCC+AGG - chr2.1:60859061-60859080 MS.gene03059:CDS 35.0%
AAAACCTAACAGATTTGGCC+TGG - chr2.1:60859759-60859778 MS.gene03059:CDS 40.0%
AATCAAGGAAAGCCAAGAGA+AGG - chr2.1:60860154-60860173 MS.gene03059:CDS 40.0%
AATGTGGGTAGACAAGAATG+CGG - chr2.1:60858958-60858977 MS.gene03059:CDS 40.0%
ACTTGGGCTTCCTAAAGATT+GGG - chr2.1:60859474-60859493 MS.gene03059:CDS 40.0%
AGATTATGAGGACACAGTTG+GGG - chr2.1:60859702-60859721 MS.gene03059:CDS 40.0%
AGGCAATACGACAAAAGGAA+AGG - chr2.1:60859179-60859198 MS.gene03059:CDS 40.0%
ATCAAACAGTTGTGTTGTGG+AGG - chr2.1:60860104-60860123 MS.gene03059:CDS 40.0%
ATCAAGGAAAGCCAAGAGAA+GGG - chr2.1:60860155-60860174 MS.gene03059:CDS 40.0%
ATGAATGTGGATCTGATGGT+GGG - chr2.1:60859497-60859516 MS.gene03059:CDS 40.0%
CACAACACAACTGTTTGATG+AGG + chr2.1:60860103-60860122 None:intergenic 40.0%
CACCCTCACTACAAAAATCA+GGG + chr2.1:60859411-60859430 None:intergenic 40.0%
CCACATTCATCCCAATCTTT+AGG + chr2.1:60859487-60859506 None:intergenic 40.0%
CCTAAAGATTGGGATGAATG+TGG - chr2.1:60859484-60859503 MS.gene03059:CDS 40.0%
CTCATCAAACAGTTGTGTTG+TGG - chr2.1:60860101-60860120 MS.gene03059:CDS 40.0%
GAGTCGAGACTTAAAGCATA+TGG - chr2.1:60860204-60860223 MS.gene03059:CDS 40.0%
GAGTGAAGATGAGGAATTTG+AGG - chr2.1:60858865-60858884 MS.gene03059:CDS 40.0%
GATGCAAGAGATACAAGAGA+AGG - chr2.1:60859234-60859253 MS.gene03059:CDS 40.0%
GGAAGGAGAAACTGAAAAAG+AGG - chr2.1:60859585-60859604 MS.gene03059:CDS 40.0%
GGCAATACGACAAAAGGAAA+GGG - chr2.1:60859180-60859199 MS.gene03059:CDS 40.0%
GTAGGTTTGAGCATAACAAG+AGG - chr2.1:60858339-60858358 MS.gene03059:CDS 40.0%
TACTTGGGCTTCCTAAAGAT+TGG - chr2.1:60859473-60859492 MS.gene03059:CDS 40.0%
TCACCCTCACTACAAAAATC+AGG + chr2.1:60859412-60859431 None:intergenic 40.0%
TGAGGAATTTGAGGAGAAAC+TGG - chr2.1:60858874-60858893 MS.gene03059:CDS 40.0%
TTCACCTGTCTTCTCCTTTA+AGG + chr2.1:60858834-60858853 None:intergenic 40.0%
! AGTGATGATGATCTCATGGA+AGG - chr2.1:60859568-60859587 MS.gene03059:CDS 40.0%
! GAAGCGTAAAACTGCACTTT+TGG - chr2.1:60859639-60859658 MS.gene03059:CDS 40.0%
! GACCCTGATTTTTGTAGTGA+GGG - chr2.1:60859406-60859425 MS.gene03059:CDS 40.0%
! GCAAAGCATTTGATTGAGGA+GGG - chr2.1:60858659-60858678 MS.gene03059:CDS 40.0%
! TATGCTTTAAGTCTCGACTC+TGG + chr2.1:60860204-60860223 None:intergenic 40.0%
! TGACCCTGATTTTTGTAGTG+AGG - chr2.1:60859405-60859424 MS.gene03059:CDS 40.0%
!! ATAGTATCTCTGGAGTATCC+AGG + chr2.1:60859780-60859799 None:intergenic 40.0%
!! TATTGGTTCACCTTCACACT+CGG - chr2.1:60858406-60858425 MS.gene03059:CDS 40.0%
AAAGAGCAAAGAGGAGAGAG+AGG - chr2.1:60859159-60859178 MS.gene03059:CDS 45.0%
AAGCCAAGAGAAGGGAAAAC+AGG - chr2.1:60860163-60860182 MS.gene03059:CDS 45.0%
ACGACAAAAGGAAAGGGATG+AGG - chr2.1:60859186-60859205 MS.gene03059:CDS 45.0%
ACTTGCTCCTTACCAAGAAG+AGG - chr2.1:60859843-60859862 MS.gene03059:CDS 45.0%
AGAAAAGGAGTTTGACCCAG+AGG - chr2.1:60859324-60859343 MS.gene03059:CDS 45.0%
AGAGCAGAGAAAGAGCAAAG+AGG - chr2.1:60859150-60859169 MS.gene03059:CDS 45.0%
AGCCAAGAGAAGGGAAAACA+GGG - chr2.1:60860164-60860183 MS.gene03059:CDS 45.0%
ATCCTTCGTGCAGCAAGTTT+GGG - chr2.1:60859919-60859938 MS.gene03059:CDS 45.0%
ATTATGAGGACACAGTTGGG+GGG - chr2.1:60859704-60859723 MS.gene03059:CDS 45.0%
CAAGGTAGAGAGTGAAGATG+AGG - chr2.1:60858856-60858875 MS.gene03059:CDS 45.0%
CTCACCTTAAAGGAGAAGAC+AGG - chr2.1:60858827-60858846 MS.gene03059:CDS 45.0%
CTGAAAGCAGCAGAAAAGGA+TGG - chr2.1:60858785-60858804 MS.gene03059:CDS 45.0%
GACTTATGCTGATGAGCAAG+AGG - chr2.1:60858745-60858764 MS.gene03059:CDS 45.0%
GAGAGAGGCAATACGACAAA+AGG - chr2.1:60859174-60859193 MS.gene03059:CDS 45.0%
GATGAATGTGGATCTGATGG+TGG - chr2.1:60859496-60859515 MS.gene03059:CDS 45.0%
GATTATGAGGACACAGTTGG+GGG - chr2.1:60859703-60859722 MS.gene03059:CDS 45.0%
GTATCCAGGCCAAATCTGTT+AGG + chr2.1:60859766-60859785 None:intergenic 45.0%
TAGACGAGGAATATGCTCGT+AGG - chr2.1:60858321-60858340 MS.gene03059:CDS 45.0%
TAGTGAGGGTGAAGAAGACA+TGG - chr2.1:60859420-60859439 MS.gene03059:CDS 45.0%
TCATCATCTTCCGAGTGTGA+AGG + chr2.1:60858419-60858438 None:intergenic 45.0%
TGAAAAAGAGGACATTCCCG+AGG - chr2.1:60859597-60859616 MS.gene03059:CDS 45.0%
TGAGATGGAAATTGAGAGGC+AGG - chr2.1:60859027-60859046 MS.gene03059:CDS 45.0%
TGAGCAAGAGGAGTTGAAAC+AGG - chr2.1:60858757-60858776 MS.gene03059:CDS 45.0%
TGGGATGAATGTGGATCTGA+TGG - chr2.1:60859493-60859512 MS.gene03059:CDS 45.0%
! ATTGAGGAGGGACCAGATTT+TGG - chr2.1:60858671-60858690 MS.gene03059:CDS 45.0%
! GGCAAAGCATTTGATTGAGG+AGG - chr2.1:60858658-60858677 MS.gene03059:CDS 45.0%
! GGTGGCAAAGCATTTGATTG+AGG - chr2.1:60858655-60858674 MS.gene03059:CDS 45.0%
!! GACTTGCTAGAATCAGCCTT+GGG + chr2.1:60860078-60860097 None:intergenic 45.0%
!! TGACTTGCTAGAATCAGCCT+TGG + chr2.1:60860079-60860098 None:intergenic 45.0%
!!! TGGATCTGATGGTGGGTTTT+TGG - chr2.1:60859504-60859523 MS.gene03059:CDS 45.0%
AAAGAGGACATTCCCGAGGA+AGG - chr2.1:60859601-60859620 MS.gene03059:CDS 50.0%
AAATCCAGGGGATAGAGTGC+TGG - chr2.1:60859075-60859094 MS.gene03059:CDS 50.0%
AGCAGCAGAAAAGGATGGCT+TGG - chr2.1:60858790-60858809 MS.gene03059:CDS 50.0%
AGGAAGGTAGTAGTCGGAAG+AGG - chr2.1:60859617-60859636 MS.gene03059:CDS 50.0%
CATGCTGAAGATGAGGGCTA+AGG - chr2.1:60859894-60859913 MS.gene03059:CDS 50.0%
CTTCCGACTACTACCTTCCT+CGG + chr2.1:60859617-60859636 None:intergenic 50.0%
GATCCTTCGTGCAGCAAGTT+TGG - chr2.1:60859918-60859937 MS.gene03059:CDS 50.0%
GCAGCAGAAAAGGATGGCTT+GGG - chr2.1:60858791-60858810 MS.gene03059:CDS 50.0%
GGAGAAGACAGGTGAAGACA+AGG - chr2.1:60858838-60858857 MS.gene03059:CDS 50.0%
TGAGCATAACAAGAGGCGAG+AGG - chr2.1:60858346-60858365 MS.gene03059:CDS 50.0%
TTATGAGGACACAGTTGGGG+GGG - chr2.1:60859705-60859724 MS.gene03059:CDS 50.0%
TTCCCGAGGAAGGTAGTAGT+CGG - chr2.1:60859611-60859630 MS.gene03059:CDS 50.0%
TTCCGACTACTACCTTCCTC+GGG + chr2.1:60859616-60859635 None:intergenic 50.0%
! AAAGGATGGCTTGGGAGATG+AGG - chr2.1:60858799-60858818 MS.gene03059:CDS 50.0%
! AATCCAGGGGATAGAGTGCT+GGG - chr2.1:60859076-60859095 MS.gene03059:CDS 50.0%
! AGCCCTGTTTTCCCTTCTCT+TGG + chr2.1:60860169-60860188 None:intergenic 50.0%
!! TACCCAAACTTGCTGCACGA+AGG + chr2.1:60859924-60859943 None:intergenic 50.0%
GGTCATGCTCGTAAGGTGGA+GGG - chr2.1:60859097-60859116 MS.gene03059:CDS 55.0%
TGCTCGTAAGGTGGAGGGTT+CGG - chr2.1:60859102-60859121 MS.gene03059:CDS 55.0%
! AGTGCTGGGTCATGCTCGTA+AGG - chr2.1:60859090-60859109 MS.gene03059:CDS 55.0%
GCTGGGTCATGCTCGTAAGG+TGG - chr2.1:60859093-60859112 MS.gene03059:CDS 60.0%
GGGTCATGCTCGTAAGGTGG+AGG - chr2.1:60859096-60859115 MS.gene03059:CDS 60.0%
TGACCCAGCACTCTATCCCC+TGG + chr2.1:60859082-60859101 None:intergenic 60.0%
!! GTAAGGTGGAGGGTTCGGTG+AGG - chr2.1:60859107-60859126 MS.gene03059:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 60858260 60860239 60858260 ID=MS.gene03059
chr2.1 mRNA 60858260 60860239 60858260 ID=MS.gene03059.t1;Parent=MS.gene03059
chr2.1 exon 60858260 60860239 60858260 ID=MS.gene03059.t1.exon1;Parent=MS.gene03059.t1
chr2.1 CDS 60858260 60860239 60858260 ID=cds.MS.gene03059.t1;Parent=MS.gene03059.t1
Gene Sequence

>MS.gene03059

ATGACTCAGAACATTTTTGATGGCAGTGATTCAGAAAATGAAGATATCTCAAATATCAAGATAGACGAGGAATATGCTCGTAGGTTTGAGCATAACAAGAGGCGAGAGGATCTCCAACGTTATGAAGAATTGAAAAAGAAAGGGGTTATTGGTTCACCTTCACACTCGGAAGATGATGAATCTGAGTCTGAATCTTCTGATGATGACGATGTGAACAATTTCAACTCTAAGAGTGATAAGGAATTCTTTGATGCTTTGATTAAGGTGAAGAAGAAAGATCCTGTTCTTAAGCAAAAGGATGTTAAGCTTTTTGAATCAGATCATAGCAGTGAAGATGAAAGTGATGATGAGAAGAGTAAAGATAAGGAGAAAAAGTCAATGTTTTTGAAGGATGTGGTGGCAAAGCATTTGATTGAGGAGGGACCAGATTTTGGTGATAAAGAGGATGAAACAAATGAGAAAGGTATATCAAATGGTGGTAAGAAGACTTATGCTGATGAGCAAGAGGAGTTGAAACAGGCTTTTCTGAAAGCAGCAGAAAAGGATGGCTTGGGAGATGAGGATTTTCTCACCTTAAAGGAGAAGACAGGTGAAGACAAGGTAGAGAGTGAAGATGAGGAATTTGAGGAGAAACTGGATGCATATTTTGATGATTCAAACGAAAATTCTTTATTTCTAAAAAACTATTTCAAGAACAAAATGTGGGTAGACAAGAATGCGGAGATTTTAAATGTTGGAGAGGAGGATTTGCAAGAGATTTCAGAAGATGAGATGGAAATTGAGAGGCAGGAAGAGTATGAAGTTAGTTTTCAGGAAAATCCAGGGGATAGAGTGCTGGGTCATGCTCGTAAGGTGGAGGGTTCGGTGAGGAAAAAGACAAACACAAGGAAAGAGCAGAGAAAGAGCAAAGAGGAGAGAGAGGCAATACGACAAAAGGAAAGGGATGAGGAGTTGAAACATTTAAAGAATGTGAAGATGCAAGAGATACAAGAGAAGGTTAAAAAGATAAAGAAGATTGCAGGGATCAACGATGATGATATTATCCCTTTGTCTACTGCAGAATTAGAAAAGGAGTTTGACCCAGAGGAATATGACAGAATGATGAAGAAAGCATTTGATGCGAAGTATTATAACGAAGAGGATGTTGACCCTGATTTTTGTAGTGAGGGTGAAGAAGACATGGAGAAGCCAGATTTTGAAAAAGAGGATGATTTACTTGGGCTTCCTAAAGATTGGGATGAATGTGGATCTGATGGTGGGTTTTTGGCTGCAAGAGAAAAAGCATTGAAAGCAAAGATTGAAAATACTAGTGATGATGATCTCATGGAAGGAGAAACTGAAAAAGAGGACATTCCCGAGGAAGGTAGTAGTCGGAAGAGGAAGCGTAAAACTGCACTTTTGGAGAAAGCAAGACAAATGATGATGGATGAGTTTTATAAATTAGATTATGAGGACACAGTTGGGGGGGATCTGAAGACAAGATTCAAGTATACCAAAACAAAACCTAACAGATTTGGCCTGGATACTCCAGAGATACTATTGATCGATGATAAGGAACTGAATCAACATATTTCCTTGAAAAAACTTGCTCCTTACCAAGAAGAGGAATTGAAGCTTAGCAAAAAAAAAAGATACATGCTGAAGATGAGGGCTAAGGAGATCCTTCGTGCAGCAAGTTTGGGTAAGAAGAAAAAGAGGTTAAAGGTTGATTCTAGCAAATCAACTCAAGTTGATTCTAGCAAGTTAACTTCAAACAATGTTGTGGAGGAAGAAAAAGCAAACACAGCAAGTTTGGATAAGAAGATAAATAAGAAGCCCAAGGCTGATTCTAGCAAGTCAACCTCATCAAACAGTTGTGTTGTGGAGGATGAAAAATCTAACACAGAAGAATCAAAATCAAGGAAAGCCAAGAGAAGGGAAAACAGGGCTAAATTAAAGTTGCCAGAGTCGAGACTTAAAGCATATGGCAAGACAACCTGA
Protein sequence

>MS.gene03059.t1

MTQNIFDGSDSENEDISNIKIDEEYARRFEHNKRREDLQRYEELKKKGVIGSPSHSEDDESESESSDDDDVNNFNSKSDKEFFDALIKVKKKDPVLKQKDVKLFESDHSSEDESDDEKSKDKEKKSMFLKDVVAKHLIEEGPDFGDKEDETNEKGISNGGKKTYADEQEELKQAFLKAAEKDGLGDEDFLTLKEKTGEDKVESEDEEFEEKLDAYFDDSNENSLFLKNYFKNKMWVDKNAEILNVGEEDLQEISEDEMEIERQEEYEVSFQENPGDRVLGHARKVEGSVRKKTNTRKEQRKSKEEREAIRQKERDEELKHLKNVKMQEIQEKVKKIKKIAGINDDDIIPLSTAELEKEFDPEEYDRMMKKAFDAKYYNEEDVDPDFCSEGEEDMEKPDFEKEDDLLGLPKDWDECGSDGGFLAAREKALKAKIENTSDDDLMEGETEKEDIPEEGSSRKRKRKTALLEKARQMMMDEFYKLDYEDTVGGDLKTRFKYTKTKPNRFGLDTPEILLIDDKELNQHISLKKLAPYQEEELKLSKKKRYMLKMRAKEILRAASLGKKKKRLKVDSSKSTQVDSSKLTSNNVVEEEKANTASLDKKINKKPKADSSKSTSSNSCVVEDEKSNTEESKSRKAKRRENRAKLKLPESRLKAYGKTT