Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034859.t1 | XP_013467977.1 | 99.7 | 331 | 1 | 0 | 1 | 331 | 46 | 376 | 8.50E-202 | 712.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034859.t1 | Q1G391 | 44.1 | 333 | 172 | 7 | 2 | 326 | 56 | 382 | 1.5e-77 | 291.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034859.t1 | I3SWK4 | 99.7 | 331 | 1 | 0 | 1 | 331 | 46 | 376 | 6.1e-202 | 712.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene59977 | MS.gene034859 | PPI |
| MS.gene42891 | MS.gene034859 | PPI |
| MS.gene034859 | MS.gene47120 | PPI |
| MS.gene33922 | MS.gene034859 | PPI |
| MS.gene95088 | MS.gene034859 | PPI |
| MS.gene034859 | MS.gene98673 | PPI |
| MS.gene98670 | MS.gene034859 | PPI |
| MS.gene98671 | MS.gene034859 | PPI |
| MS.gene75065 | MS.gene034859 | PPI |
| MS.gene034859 | MS.gene67877 | PPI |
| MS.gene071037 | MS.gene034859 | PPI |
| MS.gene005636 | MS.gene034859 | PPI |
| MS.gene012753 | MS.gene034859 | PPI |
| MS.gene43440 | MS.gene034859 | PPI |
| MS.gene009311 | MS.gene034859 | PPI |
| MS.gene064044 | MS.gene034859 | PPI |
| MS.gene034859 | MS.gene42893 | PPI |
| MS.gene75067 | MS.gene034859 | PPI |
| MS.gene53925 | MS.gene034859 | PPI |
| MS.gene034859 | MS.gene024275 | PPI |
| MS.gene034859 | MS.gene42889 | PPI |
| MS.gene071039 | MS.gene034859 | PPI |
| MS.gene52540 | MS.gene034859 | PPI |
| MS.gene034859 | MS.gene024343 | PPI |
| MS.gene03004 | MS.gene034859 | PPI |
| MS.gene034859 | MS.gene05311 | PPI |
| MS.gene42887 | MS.gene034859 | PPI |
| MS.gene024341 | MS.gene034859 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034859.t1 | MTR_1g059840 | 99.698 | 331 | 1 | 0 | 1 | 331 | 46 | 376 | 0.0 | 692 |
| MS.gene034859.t1 | MTR_7g104790 | 62.798 | 336 | 116 | 3 | 1 | 329 | 66 | 399 | 2.37e-151 | 431 |
| MS.gene034859.t1 | MTR_7g104790 | 62.798 | 336 | 116 | 3 | 1 | 329 | 42 | 375 | 8.82e-151 | 429 |
| MS.gene034859.t1 | MTR_7g104785 | 57.273 | 330 | 133 | 4 | 1 | 328 | 45 | 368 | 2.94e-129 | 374 |
| MS.gene034859.t1 | MTR_7g104760 | 58.451 | 142 | 41 | 2 | 170 | 310 | 16 | 140 | 1.89e-48 | 159 |
| MS.gene034859.t1 | MTR_2g020080 | 30.769 | 247 | 133 | 9 | 31 | 261 | 8 | 232 | 7.05e-24 | 99.4 |
| MS.gene034859.t1 | MTR_2g034630 | 28.740 | 254 | 131 | 10 | 58 | 306 | 124 | 332 | 4.15e-19 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene034859.t1 | AT1G57790 | 44.073 | 329 | 175 | 5 | 2 | 326 | 24 | 347 | 1.34e-93 | 282 |
| MS.gene034859.t1 | AT3G56470 | 43.636 | 330 | 172 | 4 | 1 | 327 | 39 | 357 | 1.09e-90 | 275 |
| MS.gene034859.t1 | AT4G00893 | 44.144 | 333 | 172 | 7 | 2 | 326 | 56 | 382 | 2.41e-90 | 275 |
| MS.gene034859.t1 | AT4G12370 | 44.702 | 302 | 155 | 6 | 38 | 330 | 1 | 299 | 3.43e-82 | 251 |
| MS.gene034859.t1 | AT4G10660 | 42.857 | 308 | 161 | 5 | 24 | 319 | 8 | 312 | 1.09e-78 | 243 |
| MS.gene034859.t1 | AT1G49360 | 36.592 | 358 | 183 | 15 | 1 | 328 | 15 | 358 | 9.32e-61 | 199 |
| MS.gene034859.t1 | AT1G49360 | 36.592 | 358 | 183 | 15 | 1 | 328 | 15 | 358 | 9.32e-61 | 199 |
| MS.gene034859.t1 | AT1G49360 | 36.592 | 358 | 183 | 15 | 1 | 328 | 15 | 358 | 9.32e-61 | 199 |
| MS.gene034859.t1 | AT1G49360 | 36.592 | 358 | 183 | 15 | 1 | 328 | 95 | 438 | 5.14e-60 | 199 |
| MS.gene034859.t1 | AT1G49360 | 36.592 | 358 | 183 | 15 | 1 | 328 | 118 | 461 | 9.75e-60 | 199 |
| MS.gene034859.t1 | AT4G10695 | 40.265 | 226 | 131 | 2 | 3 | 224 | 1 | 226 | 4.20e-55 | 180 |
| MS.gene034859.t1 | AT4G10695 | 40.265 | 226 | 131 | 2 | 3 | 224 | 1 | 226 | 4.20e-55 | 180 |
| MS.gene034859.t1 | AT3G18720 | 36.283 | 339 | 180 | 10 | 2 | 326 | 60 | 376 | 5.60e-54 | 181 |
| MS.gene034859.t1 | AT4G12382 | 46.957 | 115 | 61 | 0 | 1 | 115 | 20 | 134 | 2.39e-34 | 123 |
| MS.gene034859.t1 | AT4G12382 | 46.957 | 115 | 61 | 0 | 1 | 115 | 20 | 134 | 2.39e-34 | 123 |
| MS.gene034859.t1 | AT4G10700 | 47.934 | 121 | 56 | 2 | 210 | 324 | 119 | 238 | 1.08e-28 | 111 |
| MS.gene034859.t1 | AT4G10700 | 43.373 | 83 | 47 | 0 | 24 | 106 | 8 | 90 | 2.43e-20 | 89.0 |
| MS.gene034859.t1 | AT2G44735 | 42.675 | 157 | 83 | 4 | 91 | 242 | 110 | 264 | 4.45e-28 | 112 |
Find 74 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATACCACTGACCAAATTT+TGG | 0.144092 | 1.4:+48863273 | None:intergenic |
| TGGTCTAACTTGAAAATAAT+AGG | 0.240703 | 1.4:+48862691 | None:intergenic |
| TTGATAGTCTCCCGAGTAAA+AGG | 0.263964 | 1.4:+48863117 | None:intergenic |
| CATATCTCGTTTAGCCTTAG+AGG | 0.269854 | 1.4:-48863388 | MS.gene034859:CDS |
| TAACAAAAGGCAGACGGTTT+TGG | 0.299358 | 1.4:+48862938 | None:intergenic |
| GTTTCTTGTCTTCTCATTCA+AGG | 0.344326 | 1.4:-48862612 | MS.gene034859:CDS |
| GGTCTAACTTGAAAATAATA+GGG | 0.354290 | 1.4:+48862692 | None:intergenic |
| CTCGTAAGCAGTGGCATGAC+TGG | 0.366506 | 1.4:-48862486 | MS.gene034859:CDS |
| TCAATCCATATGCTTTCAAA+AGG | 0.390242 | 1.4:+48862451 | None:intergenic |
| AGCACGGACATTGTCCTCTA+AGG | 0.396495 | 1.4:+48863374 | None:intergenic |
| ATTGAGTTTCCTGAGTTGAA+TGG | 0.407380 | 1.4:-48863216 | MS.gene034859:CDS |
| GCCATCAGCACATGTCACCC+TGG | 0.425844 | 1.4:-48862988 | MS.gene034859:CDS |
| CACAAGAGAACGCAACTATC+TGG | 0.427646 | 1.4:+48863070 | None:intergenic |
| CTGAGTCTAACGGGTTGGCT+AGG | 0.428305 | 1.4:-48862868 | MS.gene034859:CDS |
| AGAGTTTGTTACACAAAAGA+TGG | 0.432818 | 1.4:-48863189 | MS.gene034859:CDS |
| CAAGTTAGACCAGGCCTCAA+TGG | 0.439625 | 1.4:-48862680 | MS.gene034859:CDS |
| GAATAGGTCCTCCGCTGCAC+AGG | 0.439702 | 1.4:+48863240 | None:intergenic |
| CTTCTGCGGTTTGCAAGAGT+TGG | 0.446022 | 1.4:-48863353 | MS.gene034859:CDS |
| CTTCCCATTCCATTGAGGCC+TGG | 0.447033 | 1.4:+48862671 | None:intergenic |
| TGAGTCTAACGGGTTGGCTA+GGG | 0.453281 | 1.4:-48862867 | MS.gene034859:CDS |
| CTCAGGAAACTCAATGGAAT+AGG | 0.455431 | 1.4:+48863224 | None:intergenic |
| TTCTCTGGGCATTTGGGTGG+AGG | 0.456945 | 1.4:+48862802 | None:intergenic |
| CATTCAAGGACTGACCTCCT+TGG | 0.460684 | 1.4:-48862598 | MS.gene034859:CDS |
| AATACATCAACCATGGTGAT+TGG | 0.465857 | 1.4:+48863298 | None:intergenic |
| TTCCATATGCTACTAACAAA+AGG | 0.472828 | 1.4:+48862925 | None:intergenic |
| TTGATCCATCTGAACGCACT+TGG | 0.477811 | 1.4:-48862840 | MS.gene034859:CDS |
| TGGTATGTCATCTCAAATCT+TGG | 0.481609 | 1.4:+48863090 | None:intergenic |
| AATAAGCTTGTGTTCTGTAA+TGG | 0.484684 | 1.4:-48862904 | MS.gene034859:CDS |
| GTGCTGATGGCCACAATAGT+AGG | 0.487396 | 1.4:+48863000 | None:intergenic |
| CCATCAGCACATGTCACCCT+GGG | 0.492069 | 1.4:-48862987 | MS.gene034859:CDS |
| AGACCAGGCCTCAATGGAAT+GGG | 0.506121 | 1.4:-48862674 | MS.gene034859:CDS |
| ATGGTTGGTTACTGCTATAC+CGG | 0.507693 | 1.4:-48863170 | MS.gene034859:CDS |
| TAGCTCTTCCCATTCCATTG+AGG | 0.512554 | 1.4:+48862666 | None:intergenic |
| CCCAGGGTGACATGTGCTGA+TGG | 0.513422 | 1.4:+48862987 | None:intergenic |
| GTTCACCATGCGTACAGCAT+TGG | 0.515987 | 1.4:+48863320 | None:intergenic |
| TCGTAAGCAGTGGCATGACT+GGG | 0.517661 | 1.4:-48862485 | MS.gene034859:CDS |
| ATTCAACTCAGGAAACTCAA+TGG | 0.520817 | 1.4:+48863218 | None:intergenic |
| TAGACCAGGCCTCAATGGAA+TGG | 0.520927 | 1.4:-48862675 | MS.gene034859:CDS |
| ACAGTGAACAATACACAGTC+AGG | 0.522970 | 1.4:+48863036 | None:intergenic |
| ACGCTCCAAGTGCGTTCAGA+TGG | 0.530295 | 1.4:+48862835 | None:intergenic |
| CTGACCTCCTTGGAAATATG+AGG | 0.530915 | 1.4:-48862588 | MS.gene034859:CDS |
| CAATCCATATGCTTTCAAAA+GGG | 0.538554 | 1.4:+48862452 | None:intergenic |
| TTTGTTACACAAAAGATGGT+TGG | 0.543077 | 1.4:-48863185 | MS.gene034859:CDS |
| TATAACATCTCCCTCTTGCT+CGG | 0.543615 | 1.4:+48862741 | None:intergenic |
| GTGACCCACTCAGTTGCCCC+AGG | 0.548400 | 1.4:+48862970 | None:intergenic |
| AATACACAGTCAGGTGATGT+TGG | 0.549189 | 1.4:+48863045 | None:intergenic |
| ATTGCCTGAGTCTAACGGGT+TGG | 0.555672 | 1.4:-48862873 | MS.gene034859:CDS |
| GCATGTTAGTCCTACTATTG+TGG | 0.555933 | 1.4:-48863010 | MS.gene034859:CDS |
| TACTGTTCCTCATATTTCCA+AGG | 0.557830 | 1.4:+48862581 | None:intergenic |
| AAATTCTCTGGGCATTTGGG+TGG | 0.572307 | 1.4:+48862799 | None:intergenic |
| ACACTCGATCAGTTCTTGGC+CGG | 0.582893 | 1.4:+48863151 | None:intergenic |
| GAAATTTATGACCGAGCAAG+AGG | 0.585940 | 1.4:-48862752 | MS.gene034859:CDS |
| TCACCCTGGGGCAACTGAGT+GGG | 0.589444 | 1.4:-48862974 | MS.gene034859:CDS |
| CAGTCATGCCACTGCTTACG+AGG | 0.597324 | 1.4:+48862487 | None:intergenic |
| GTCACCCTGGGGCAACTGAG+TGG | 0.599763 | 1.4:-48862975 | MS.gene034859:CDS |
| CTAGCCAACCCGTTAGACTC+AGG | 0.605339 | 1.4:+48862869 | None:intergenic |
| ACTCTAGATCCATTCAACTC+AGG | 0.606054 | 1.4:+48863207 | None:intergenic |
| TTTGGAAAATACATCAACCA+TGG | 0.609449 | 1.4:+48863291 | None:intergenic |
| AATAGGTCCTCCGCTGCACA+GGG | 0.610369 | 1.4:+48863241 | None:intergenic |
| CATATGGATTGAACCACCAA+AGG | 0.612060 | 1.4:-48862440 | MS.gene034859:CDS |
| TCTTGCAAACCGCAGAAGCA+CGG | 0.620256 | 1.4:+48863358 | None:intergenic |
| GAGTCTAACGGGTTGGCTAG+GGG | 0.622563 | 1.4:-48862866 | MS.gene034859:CDS |
| TCTATGACCCTGTGCAGCGG+AGG | 0.622795 | 1.4:-48863248 | MS.gene034859:CDS |
| TGCTACTAACAAAAGGCAGA+CGG | 0.625252 | 1.4:+48862932 | None:intergenic |
| GGACAATGTCCGTGCTTCTG+CGG | 0.633574 | 1.4:-48863367 | MS.gene034859:CDS |
| TGACCCACTCAGTTGCCCCA+GGG | 0.643613 | 1.4:+48862971 | None:intergenic |
| AATTCTATGACCCTGTGCAG+CGG | 0.644847 | 1.4:-48863251 | MS.gene034859:CDS |
| TGTTGCCAATGCTGTACGCA+TGG | 0.644907 | 1.4:-48863325 | MS.gene034859:CDS |
| AAATTTATGACCGAGCAAGA+GGG | 0.650243 | 1.4:-48862751 | MS.gene034859:CDS |
| GCTACTATCCTCGTAAGCAG+TGG | 0.662398 | 1.4:-48862495 | MS.gene034859:CDS |
| CGTAAGCAGTGGCATGACTG+GGG | 0.674467 | 1.4:-48862484 | MS.gene034859:CDS |
| TGTTCCTCATATTTCCAAGG+AGG | 0.678301 | 1.4:+48862584 | None:intergenic |
| CATCAGCACATGTCACCCTG+GGG | 0.702309 | 1.4:-48862986 | MS.gene034859:CDS |
| GCATGGTGAACCAATCACCA+TGG | 0.715864 | 1.4:-48863308 | MS.gene034859:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGAATTTTTTCGCAAAAAAT+TGG | - | chr1.4:48863030-48863049 | MS.gene034859:CDS | 20.0% |
| !!! | TTGATGTATTTTCCAAAATT+TGG | - | chr1.4:48862528-48862547 | MS.gene034859:CDS | 20.0% |
| !!! | TTTTCTTTAATCCTTTTACT+CGG | - | chr1.4:48862685-48862704 | MS.gene034859:CDS | 20.0% |
| ! | GGTCTAACTTGAAAATAATA+GGG | + | chr1.4:48863124-48863143 | None:intergenic | 25.0% |
| ! | TGGTCTAACTTGAAAATAAT+AGG | + | chr1.4:48863125-48863144 | None:intergenic | 25.0% |
| !! | TTTCTTTAATCCTTTTACTC+GGG | - | chr1.4:48862686-48862705 | MS.gene034859:CDS | 25.0% |
| !! | TTTTTGCGAAAAAATTCTCT+GGG | + | chr1.4:48863028-48863047 | None:intergenic | 25.0% |
| !!! | ATTTTTTCGCAAAAAATTGG+TGG | - | chr1.4:48863033-48863052 | MS.gene034859:CDS | 25.0% |
| !!! | TATTATTTTCAAGTTAGACC+AGG | - | chr1.4:48863124-48863143 | MS.gene034859:CDS | 25.0% |
| !!! | TTCTCTAAAGTTCGTTTTTA+TGG | - | chr1.4:48863260-48863279 | MS.gene034859:CDS | 25.0% |
| !!! | TTTTTTGCGAAAAAATTCTC+TGG | + | chr1.4:48863029-48863048 | None:intergenic | 25.0% |
| AAAAAATTCTCTGGGCATTT+GGG | + | chr1.4:48863020-48863039 | None:intergenic | 30.0% | |
| AATAAGCTTGTGTTCTGTAA+TGG | - | chr1.4:48862909-48862928 | MS.gene034859:CDS | 30.0% | |
| CAATCCATATGCTTTCAAAA+GGG | + | chr1.4:48863364-48863383 | None:intergenic | 30.0% | |
| TCAATCCATATGCTTTCAAA+AGG | + | chr1.4:48863365-48863384 | None:intergenic | 30.0% | |
| TTCCATATGCTACTAACAAA+AGG | + | chr1.4:48862891-48862910 | None:intergenic | 30.0% | |
| TTTGGAAAATACATCAACCA+TGG | + | chr1.4:48862525-48862544 | None:intergenic | 30.0% | |
| TTTGTTACACAAAAGATGGT+TGG | - | chr1.4:48862628-48862647 | MS.gene034859:CDS | 30.0% | |
| ! | ATTTTCCAAAATTTGGTCAG+TGG | - | chr1.4:48862535-48862554 | MS.gene034859:CDS | 30.0% |
| !! | AGAGTTTGTTACACAAAAGA+TGG | - | chr1.4:48862624-48862643 | MS.gene034859:CDS | 30.0% |
| AAAAACACTCGATCAGTTCT+TGG | + | chr1.4:48862669-48862688 | None:intergenic | 35.0% | |
| AAATTTATGACCGAGCAAGA+GGG | - | chr1.4:48863062-48863081 | MS.gene034859:CDS | 35.0% | |
| AATACATCAACCATGGTGAT+TGG | + | chr1.4:48862518-48862537 | None:intergenic | 35.0% | |
| AATCCAGAAAAATCCTTTGG+TGG | + | chr1.4:48863389-48863408 | None:intergenic | 35.0% | |
| ATTCAACTCAGGAAACTCAA+TGG | + | chr1.4:48862598-48862617 | None:intergenic | 35.0% | |
| GAAAAAATTCTCTGGGCATT+TGG | + | chr1.4:48863021-48863040 | None:intergenic | 35.0% | |
| GAAGAGCTAAAAACACTAGA+TGG | - | chr1.4:48863161-48863180 | MS.gene034859:CDS | 35.0% | |
| GAGAATCCAGAAAAATCCTT+TGG | + | chr1.4:48863392-48863411 | None:intergenic | 35.0% | |
| GTTTCTTGTCTTCTCATTCA+AGG | - | chr1.4:48863201-48863220 | MS.gene034859:CDS | 35.0% | |
| TACTGTTCCTCATATTTCCA+AGG | + | chr1.4:48863235-48863254 | None:intergenic | 35.0% | |
| TGGTATGTCATCTCAAATCT+TGG | + | chr1.4:48862726-48862745 | None:intergenic | 35.0% | |
| TTCGCAAAAAATTGGTGGAA+GGG | - | chr1.4:48863038-48863057 | MS.gene034859:CDS | 35.0% | |
| TTTCGCAAAAAATTGGTGGA+AGG | - | chr1.4:48863037-48863056 | MS.gene034859:CDS | 35.0% | |
| ! | ATTGAGTTTCCTGAGTTGAA+TGG | - | chr1.4:48862597-48862616 | MS.gene034859:CDS | 35.0% |
| ! | CTTTTATTGCCTGAGTCTAA+CGG | - | chr1.4:48862935-48862954 | MS.gene034859:CDS | 35.0% |
| ! | TCATACCACTGACCAAATTT+TGG | + | chr1.4:48862543-48862562 | None:intergenic | 35.0% |
| ! | TGCCTTTTGTTAGTAGCATA+TGG | - | chr1.4:48862886-48862905 | MS.gene034859:CDS | 35.0% |
| ! | TTTTATTGCCTGAGTCTAAC+GGG | - | chr1.4:48862936-48862955 | MS.gene034859:CDS | 35.0% |
| !! | AAGACCCTTTTGAAAGCATA+TGG | - | chr1.4:48863357-48863376 | MS.gene034859:CDS | 35.0% |
| AATACACAGTCAGGTGATGT+TGG | + | chr1.4:48862771-48862790 | None:intergenic | 40.0% | |
| ACAGTGAACAATACACAGTC+AGG | + | chr1.4:48862780-48862799 | None:intergenic | 40.0% | |
| ACTCTAGATCCATTCAACTC+AGG | + | chr1.4:48862609-48862628 | None:intergenic | 40.0% | |
| CTCAGGAAACTCAATGGAAT+AGG | + | chr1.4:48862592-48862611 | None:intergenic | 40.0% | |
| GAAATTTATGACCGAGCAAG+AGG | - | chr1.4:48863061-48863080 | MS.gene034859:CDS | 40.0% | |
| GCATGTTAGTCCTACTATTG+TGG | - | chr1.4:48862803-48862822 | MS.gene034859:CDS | 40.0% | |
| TATAACATCTCCCTCTTGCT+CGG | + | chr1.4:48863075-48863094 | None:intergenic | 40.0% | |
| TCGCAAAAAATTGGTGGAAG+GGG | - | chr1.4:48863039-48863058 | MS.gene034859:CDS | 40.0% | |
| TGCTACTAACAAAAGGCAGA+CGG | + | chr1.4:48862884-48862903 | None:intergenic | 40.0% | |
| TGTTCCTCATATTTCCAAGG+AGG | + | chr1.4:48863232-48863251 | None:intergenic | 40.0% | |
| ! | ATGGTTGGTTACTGCTATAC+CGG | - | chr1.4:48862643-48862662 | MS.gene034859:CDS | 40.0% |
| ! | CATATGGATTGAACCACCAA+AGG | - | chr1.4:48863373-48863392 | MS.gene034859:CDS | 40.0% |
| ! | GAACCACCAAAGGATTTTTC+TGG | - | chr1.4:48863383-48863402 | MS.gene034859:CDS | 40.0% |
| ! | TAACAAAAGGCAGACGGTTT+TGG | + | chr1.4:48862878-48862897 | None:intergenic | 40.0% |
| ! | TTGATAGTCTCCCGAGTAAA+AGG | + | chr1.4:48862699-48862718 | None:intergenic | 40.0% |
| !! | CATATCTCGTTTAGCCTTAG+AGG | - | chr1.4:48862425-48862444 | MS.gene034859:CDS | 40.0% |
| AAATTCTCTGGGCATTTGGG+TGG | + | chr1.4:48863017-48863036 | None:intergenic | 45.0% | |
| AATTCTATGACCCTGTGCAG+CGG | - | chr1.4:48862562-48862581 | MS.gene034859:CDS | 45.0% | |
| CACAAGAGAACGCAACTATC+TGG | + | chr1.4:48862746-48862765 | None:intergenic | 45.0% | |
| CTGACCTCCTTGGAAATATG+AGG | - | chr1.4:48863225-48863244 | MS.gene034859:CDS | 45.0% | |
| TAGCTCTTCCCATTCCATTG+AGG | + | chr1.4:48863150-48863169 | None:intergenic | 45.0% | |
| TTGATCCATCTGAACGCACT+TGG | - | chr1.4:48862973-48862992 | MS.gene034859:CDS | 45.0% | |
| !! | ACGCACTTGGAGCGTTTTAT+CGG | - | chr1.4:48862986-48863005 | MS.gene034859:CDS | 45.0% |
| ACACTCGATCAGTTCTTGGC+CGG | + | chr1.4:48862665-48862684 | None:intergenic | 50.0% | |
| AGACCAGGCCTCAATGGAAT+GGG | - | chr1.4:48863139-48863158 | MS.gene034859:CDS | 50.0% | |
| AGCACGGACATTGTCCTCTA+AGG | + | chr1.4:48862442-48862461 | None:intergenic | 50.0% | |
| CAAGTTAGACCAGGCCTCAA+TGG | - | chr1.4:48863133-48863152 | MS.gene034859:CDS | 50.0% | |
| CATTCAAGGACTGACCTCCT+TGG | - | chr1.4:48863215-48863234 | MS.gene034859:CDS | 50.0% | |
| CTTCTGCGGTTTGCAAGAGT+TGG | - | chr1.4:48862460-48862479 | MS.gene034859:CDS | 50.0% | |
| GCATGGTGAACCAATCACCA+TGG | - | chr1.4:48862505-48862524 | MS.gene034859:CDS | 50.0% | |
| GCTACTATCCTCGTAAGCAG+TGG | - | chr1.4:48863318-48863337 | MS.gene034859:CDS | 50.0% | |
| GTTCACCATGCGTACAGCAT+TGG | + | chr1.4:48862496-48862515 | None:intergenic | 50.0% | |
| TAGACCAGGCCTCAATGGAA+TGG | - | chr1.4:48863138-48863157 | MS.gene034859:CDS | 50.0% | |
| TCGTAAGCAGTGGCATGACT+GGG | - | chr1.4:48863328-48863347 | MS.gene034859:CDS | 50.0% | |
| TCTTGCAAACCGCAGAAGCA+CGG | + | chr1.4:48862458-48862477 | None:intergenic | 50.0% | |
| TGTTGCCAATGCTGTACGCA+TGG | - | chr1.4:48862488-48862507 | MS.gene034859:CDS | 50.0% | |
| ! | ATTGCCTGAGTCTAACGGGT+TGG | - | chr1.4:48862940-48862959 | MS.gene034859:CDS | 50.0% |
| ! | GTGCTGATGGCCACAATAGT+AGG | + | chr1.4:48862816-48862835 | None:intergenic | 50.0% |
| !! | TGAGTCTAACGGGTTGGCTA+GGG | - | chr1.4:48862946-48862965 | MS.gene034859:CDS | 50.0% |
| AATAGGTCCTCCGCTGCACA+GGG | + | chr1.4:48862575-48862594 | None:intergenic | 55.0% | |
| ACGCTCCAAGTGCGTTCAGA+TGG | + | chr1.4:48862981-48863000 | None:intergenic | 55.0% | |
| CAGTCATGCCACTGCTTACG+AGG | + | chr1.4:48863329-48863348 | None:intergenic | 55.0% | |
| CATCAGCACATGTCACCCTG+GGG | - | chr1.4:48862827-48862846 | MS.gene034859:CDS | 55.0% | |
| CCATCAGCACATGTCACCCT+GGG | - | chr1.4:48862826-48862845 | MS.gene034859:CDS | 55.0% | |
| CGTAAGCAGTGGCATGACTG+GGG | - | chr1.4:48863329-48863348 | MS.gene034859:CDS | 55.0% | |
| CTAGCCAACCCGTTAGACTC+AGG | + | chr1.4:48862947-48862966 | None:intergenic | 55.0% | |
| CTCGTAAGCAGTGGCATGAC+TGG | - | chr1.4:48863327-48863346 | MS.gene034859:CDS | 55.0% | |
| CTTCCCATTCCATTGAGGCC+TGG | + | chr1.4:48863145-48863164 | None:intergenic | 55.0% | |
| GGACAATGTCCGTGCTTCTG+CGG | - | chr1.4:48862446-48862465 | MS.gene034859:CDS | 55.0% | |
| TTCTCTGGGCATTTGGGTGG+AGG | + | chr1.4:48863014-48863033 | None:intergenic | 55.0% | |
| !! | CTGAGTCTAACGGGTTGGCT+AGG | - | chr1.4:48862945-48862964 | MS.gene034859:CDS | 55.0% |
| !! | GAGTCTAACGGGTTGGCTAG+GGG | - | chr1.4:48862947-48862966 | MS.gene034859:CDS | 55.0% |
| CCCAGGGTGACATGTGCTGA+TGG | + | chr1.4:48862829-48862848 | None:intergenic | 60.0% | |
| GAATAGGTCCTCCGCTGCAC+AGG | + | chr1.4:48862576-48862595 | None:intergenic | 60.0% | |
| GCCATCAGCACATGTCACCC+TGG | - | chr1.4:48862825-48862844 | MS.gene034859:CDS | 60.0% | |
| TCACCCTGGGGCAACTGAGT+GGG | - | chr1.4:48862839-48862858 | MS.gene034859:CDS | 60.0% | |
| TCTATGACCCTGTGCAGCGG+AGG | - | chr1.4:48862565-48862584 | MS.gene034859:CDS | 60.0% | |
| TGACCCACTCAGTTGCCCCA+GGG | + | chr1.4:48862845-48862864 | None:intergenic | 60.0% | |
| GTCACCCTGGGGCAACTGAG+TGG | - | chr1.4:48862838-48862857 | MS.gene034859:CDS | 65.0% | |
| GTGACCCACTCAGTTGCCCC+AGG | + | chr1.4:48862846-48862865 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 48862420 | 48863415 | 48862420 | ID=MS.gene034859 |
| chr1.4 | mRNA | 48862420 | 48863415 | 48862420 | ID=MS.gene034859.t1;Parent=MS.gene034859 |
| chr1.4 | exon | 48862420 | 48863415 | 48862420 | ID=MS.gene034859.t1.exon1;Parent=MS.gene034859.t1 |
| chr1.4 | CDS | 48862420 | 48863415 | 48862420 | ID=cds.MS.gene034859.t1;Parent=MS.gene034859.t1 |
| Gene Sequence |
| Protein sequence |
