AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene041778

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041778.t1 MTR_1g095560 97.603 459 11 0 1 459 1 459 0.0 935
MS.gene041778.t1 MTR_1g095560 91.242 491 11 1 1 459 1 491 0.0 920
MS.gene041778.t1 MTR_1g095540 84.716 458 70 0 1 458 1 458 0.0 820
MS.gene041778.t1 MTR_2g062990 54.466 459 204 3 3 457 6 463 0.0 544
MS.gene041778.t1 MTR_2g063000 54.725 455 197 4 8 457 14 464 0.0 533
MS.gene041778.t1 MTR_2g062980 53.896 462 202 5 3 457 6 463 0.0 531
MS.gene041778.t1 MTR_7g013790 55.098 461 192 7 7 457 10 465 0.0 523
MS.gene041778.t1 MTR_2g081620 53.761 452 206 3 8 457 14 464 0.0 522
MS.gene041778.t1 MTR_2g063000 49.670 455 189 5 8 457 14 433 1.27e-162 466
MS.gene041778.t1 MTR_3g034290 49.535 430 207 5 28 456 70 490 1.64e-156 453
MS.gene041778.t1 MTR_3g079560 51.389 432 197 7 28 458 73 492 9.04e-156 451
MS.gene041778.t1 MTR_3g079570 52.000 425 192 6 26 450 72 484 2.00e-155 450
MS.gene041778.t1 MTR_3g079600 52.113 426 190 6 28 450 71 485 2.82e-154 447
MS.gene041778.t1 MTR_4g075150 48.922 464 224 9 1 456 3 461 3.54e-154 446
MS.gene041778.t1 MTR_4g075150 48.712 466 224 9 1 456 3 463 8.29e-154 445
MS.gene041778.t1 MTR_3g079620 50.114 437 197 7 31 458 76 500 6.93e-153 444
MS.gene041778.t1 MTR_3g079590 50.824 425 198 6 26 450 71 484 1.98e-149 435
MS.gene041778.t1 MTR_1g021010 50.459 436 199 8 17 450 60 480 6.09e-148 431
MS.gene041778.t1 MTR_0003s0560 49.188 431 207 7 28 457 69 488 7.66e-148 431
MS.gene041778.t1 MTR_1g020090 49.428 437 199 7 19 450 72 491 1.57e-147 430
MS.gene041778.t1 MTR_3g079630 48.624 436 199 8 26 450 71 492 7.08e-143 418
MS.gene041778.t1 MTR_4g089155 47.072 444 219 6 27 458 48 487 1.47e-141 414
MS.gene041778.t1 MTR_4g122950 44.538 476 240 7 5 459 8 480 1.49e-141 414
MS.gene041778.t1 MTR_1g021020 47.816 435 211 6 17 450 62 481 1.62e-141 414
MS.gene041778.t1 MTR_2g012860 44.538 476 235 7 6 457 4 474 2.59e-141 413
MS.gene041778.t1 MTR_4g122960 45.570 474 236 8 5 459 8 478 1.22e-140 412
MS.gene041778.t1 MTR_2g012850 44.658 468 242 8 3 458 5 467 2.84e-137 403
MS.gene041778.t1 MTR_3g034290 50.000 348 165 4 28 375 70 408 6.81e-126 372
MS.gene041778.t1 MTR_8g099930 40.086 464 253 11 12 458 9 464 2.09e-116 349
MS.gene041778.t1 MTR_2g449850 42.438 443 231 9 28 458 34 464 8.02e-116 348
MS.gene041778.t1 MTR_3g090130 42.117 463 250 10 6 459 6 459 4.19e-115 346
MS.gene041778.t1 MTR_5g072570 40.725 469 258 9 3 459 4 464 2.46e-113 342
MS.gene041778.t1 MTR_3g498755 40.000 440 243 10 31 456 13 445 7.24e-113 340
MS.gene041778.t1 MTR_3g434850 41.290 465 241 12 5 457 11 455 1.17e-111 337
MS.gene041778.t1 MTR_7g021130 40.774 439 237 11 31 456 29 457 8.21e-110 332
MS.gene041778.t1 MTR_3g090150 40.091 439 251 8 30 459 31 466 2.28e-105 322
MS.gene041778.t1 MTR_1g040370 38.799 433 216 9 29 456 27 415 4.37e-102 311
MS.gene041778.t1 MTR_0003s0560 50.936 267 116 6 28 289 69 325 1.59e-87 271
MS.gene041778.t1 MTR_8g011350 34.990 483 254 12 19 450 17 490 4.30e-82 262
MS.gene041778.t1 MTR_7g080180 34.320 507 257 18 5 455 12 498 3.41e-75 244
MS.gene041778.t1 MTR_7g051430 32.727 495 275 13 5 450 5 490 3.48e-73 239
MS.gene041778.t1 MTR_1g102130 33.556 450 236 13 26 456 85 490 5.95e-73 238
MS.gene041778.t1 MTR_8g011350 34.056 461 244 12 19 428 17 468 4.79e-72 235
MS.gene041778.t1 MTR_7g080180 34.325 437 224 16 33 414 28 456 4.73e-62 209
MS.gene041778.t1 MTR_2g018590 29.498 478 296 16 2 455 9 469 2.60e-54 188
MS.gene041778.t1 MTR_7g051430 31.981 419 228 12 5 375 5 414 7.75e-54 186
MS.gene041778.t1 MTR_2g018600 29.614 466 284 16 15 455 23 469 1.76e-53 186
MS.gene041778.t1 MTR_4g021490 30.562 445 269 14 32 452 39 467 3.18e-53 186
MS.gene041778.t1 MTR_4g021520 30.995 442 271 13 32 452 39 467 3.64e-53 185
MS.gene041778.t1 MTR_4g021535 30.149 471 293 15 4 452 7 463 5.63e-53 185
MS.gene041778.t1 MTR_4g021510 31.448 442 269 14 32 452 38 466 1.59e-52 184
MS.gene041778.t1 MTR_3g100420 30.063 479 295 14 8 455 27 496 1.79e-52 184
MS.gene041778.t1 MTR_4g021500 31.849 449 265 15 32 455 39 471 1.02e-51 187
MS.gene041778.t1 MTR_4g021500 30.641 421 256 14 45 452 487 884 1.66e-46 172
MS.gene041778.t1 MTR_4g021500 31.849 449 265 15 32 455 39 471 1.08e-51 187
MS.gene041778.t1 MTR_4g021500 29.655 435 260 13 45 452 487 902 2.33e-46 172
MS.gene041778.t1 MTR_4g021530 29.185 466 293 14 8 452 18 467 1.31e-50 178
MS.gene041778.t1 MTR_3g045770 28.017 464 298 12 1 447 2 446 2.10e-50 177
MS.gene041778.t1 MTR_2g018630 28.416 461 293 14 13 455 24 465 3.61e-47 169
MS.gene041778.t1 MTR_4g057585 28.941 425 271 13 38 451 87 491 2.04e-44 162
MS.gene041778.t1 MTR_4g021520 31.266 403 244 12 32 414 39 428 3.08e-44 160
MS.gene041778.t1 MTR_2g095730 28.979 421 266 14 47 453 94 495 6.61e-43 158
MS.gene041778.t1 MTR_4g084710 29.314 423 255 15 49 455 45 439 2.23e-42 156
MS.gene041778.t1 MTR_4g057595 28.505 428 251 13 47 451 97 492 2.68e-42 157
MS.gene041778.t1 MTR_2g095750 27.400 427 262 13 47 453 100 498 3.02e-42 157
MS.gene041778.t1 MTR_1g050545 27.934 426 253 14 45 447 81 475 1.55e-41 154
MS.gene041778.t1 MTR_4g057600 27.465 426 262 14 47 453 95 492 2.05e-39 149
MS.gene041778.t1 MTR_0075s0010 31.053 380 189 16 30 402 5 318 2.93e-39 144
MS.gene041778.t1 MTR_1g094155 27.208 419 256 14 49 447 92 481 4.68e-39 147
MS.gene041778.t1 MTR_4g057570 26.682 446 274 12 32 453 74 490 5.24e-39 147
MS.gene041778.t1 MTR_5g097180 27.316 421 266 13 49 455 43 437 2.60e-37 142
MS.gene041778.t1 MTR_4g021535 26.752 471 262 17 4 452 7 416 2.08e-34 133
MS.gene041778.t1 MTR_2g009200 26.350 463 268 14 19 450 14 434 2.49e-34 134
MS.gene041778.t1 MTR_2g095710 27.670 412 242 16 62 453 106 481 4.09e-31 125
MS.gene041778.t1 MTR_2g018630 26.257 358 240 11 112 455 13 360 1.04e-30 122
MS.gene041778.t1 MTR_1g051175 38.938 113 61 4 39 150 18 123 3.86e-16 79.0
MS.gene041778.t1 MTR_4g056520 30.968 155 97 4 41 193 27 173 2.11e-14 75.5
MS.gene041778.t1 MTR_4g122970 37.349 83 42 2 8 82 7 87 3.73e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041778.t1 AT3G07990 76.322 435 103 0 22 456 23 457 0.0 716
MS.gene041778.t1 AT2G35780 70.709 437 122 3 22 456 19 451 0.0 656
MS.gene041778.t1 AT4G30610 55.769 468 193 6 1 458 1 464 0.0 541
MS.gene041778.t1 AT4G30810 58.237 431 175 2 23 450 28 456 0.0 539
MS.gene041778.t1 AT2G24010 55.862 435 187 4 25 458 23 453 0.0 515
MS.gene041778.t1 AT2G24000 55.705 447 185 6 22 458 20 463 0.0 514
MS.gene041778.t1 AT3G02110 54.911 448 182 7 26 458 31 473 9.12e-180 511
MS.gene041778.t1 AT2G24010 53.778 450 188 5 25 458 23 468 2.44e-176 502
MS.gene041778.t1 AT2G35770 54.248 459 201 5 3 458 8 460 1.29e-175 500
MS.gene041778.t1 AT2G24010 51.392 467 182 6 33 458 2 464 1.98e-168 482
MS.gene041778.t1 AT5G23210 50.330 455 196 8 28 457 47 496 5.34e-153 444
MS.gene041778.t1 AT3G63470 49.087 438 203 9 28 459 77 500 2.05e-151 440
MS.gene041778.t1 AT3G17180 49.111 450 210 8 25 458 31 477 1.78e-145 424
MS.gene041778.t1 AT1G61130 47.210 466 233 8 1 458 2 462 7.70e-144 419
MS.gene041778.t1 AT5G08260 44.025 477 236 10 5 457 8 477 5.95e-138 405
MS.gene041778.t1 AT1G11080 47.020 453 219 6 24 458 42 491 2.53e-135 399
MS.gene041778.t1 AT1G11080 47.020 453 219 6 24 458 42 491 2.56e-135 399
MS.gene041778.t1 AT2G24010 53.482 359 147 5 33 375 2 356 5.33e-134 390
MS.gene041778.t1 AT3G52020 46.789 436 217 11 26 456 73 498 8.67e-134 395
MS.gene041778.t1 AT5G23210 49.512 410 177 8 28 412 47 451 4.96e-132 389
MS.gene041778.t1 AT4G15100 43.633 479 244 8 3 458 8 483 4.26e-129 383
MS.gene041778.t1 AT5G23210 48.387 403 181 6 80 457 1 401 4.51e-127 374
MS.gene041778.t1 AT5G23210 48.608 395 176 6 88 457 8 400 1.06e-125 371
MS.gene041778.t1 AT3G17180 46.944 409 199 7 25 418 31 436 3.97e-125 371
MS.gene041778.t1 AT2G05850 41.163 447 246 9 19 458 50 486 4.00e-121 362
MS.gene041778.t1 AT3G52000 43.578 436 230 11 28 459 59 482 6.40e-119 357
MS.gene041778.t1 AT3G52010 41.163 447 243 11 21 459 53 487 4.66e-117 352
MS.gene041778.t1 AT2G33530 43.527 448 232 11 22 456 23 462 5.08e-117 351
MS.gene041778.t1 AT2G12480 40.230 435 250 6 29 457 28 458 1.57e-112 340
MS.gene041778.t1 AT1G43780 41.798 445 238 10 30 459 35 473 2.98e-112 339
MS.gene041778.t1 AT5G42240 40.716 447 241 9 29 459 29 467 1.71e-109 332
MS.gene041778.t1 AT1G28110 40.868 438 238 10 31 456 30 458 2.02e-109 332
MS.gene041778.t1 AT1G28110 40.868 438 238 10 31 456 30 458 2.02e-109 332
MS.gene041778.t1 AT2G24000 42.282 447 182 9 22 458 20 400 4.67e-109 328
MS.gene041778.t1 AT2G12480 38.710 434 234 7 29 457 28 434 4.96e-105 320
MS.gene041778.t1 AT5G23210 47.293 351 158 6 88 413 8 356 9.14e-105 316
MS.gene041778.t1 AT5G42230 38.702 447 250 9 29 459 25 463 9.05e-104 317
MS.gene041778.t1 AT5G42230 38.702 447 250 9 29 459 25 463 9.05e-104 317
MS.gene041778.t1 AT2G12480 38.710 434 232 7 29 457 28 432 1.15e-103 316
MS.gene041778.t1 AT2G12480 38.621 435 232 8 29 457 28 433 6.52e-102 311
MS.gene041778.t1 AT4G12910 34.949 495 268 11 9 455 9 497 1.11e-82 264
MS.gene041778.t1 AT3G25420 34.553 492 266 13 14 455 9 494 2.10e-82 263
MS.gene041778.t1 AT3G56540 61.667 180 65 3 10 189 57 232 9.54e-71 225
MS.gene041778.t1 AT4G12910 33.775 453 247 10 9 414 9 455 8.65e-69 226
MS.gene041778.t1 AT2G22990 32.102 433 262 13 33 455 23 433 6.47e-60 202
MS.gene041778.t1 AT2G22970 32.102 433 260 14 33 455 25 433 7.82e-59 199
MS.gene041778.t1 AT2G22920 31.409 433 265 13 33 455 25 435 1.11e-58 199
MS.gene041778.t1 AT1G73270 31.336 434 262 12 33 455 33 441 3.98e-54 187
MS.gene041778.t1 AT1G73270 31.336 434 262 12 33 455 33 441 4.16e-54 187
MS.gene041778.t1 AT2G22990 32.108 408 246 12 33 430 23 409 7.27e-54 187
MS.gene041778.t1 AT2G22990 32.187 407 245 12 33 429 23 408 8.57e-54 186
MS.gene041778.t1 AT2G23000 28.637 433 279 12 33 455 25 437 4.09e-53 184
MS.gene041778.t1 AT2G23000 28.637 433 279 12 33 455 25 437 4.09e-53 184
MS.gene041778.t1 AT1G73290 30.505 436 261 12 33 455 32 438 5.21e-53 184
MS.gene041778.t1 AT1G73280 31.207 439 256 14 33 455 33 441 6.78e-53 184
MS.gene041778.t1 AT3G12203 30.407 467 283 15 1 455 1 437 2.53e-52 182
MS.gene041778.t1 AT2G22970 31.340 418 254 13 33 440 25 419 3.27e-52 182
MS.gene041778.t1 AT2G23010 28.761 452 290 13 15 455 7 437 8.12e-52 181
MS.gene041778.t1 AT3G12203 30.947 433 264 13 33 455 9 416 8.39e-52 180
MS.gene041778.t1 AT2G22970 31.618 408 246 13 33 430 25 409 1.26e-51 180
MS.gene041778.t1 AT3G10450 29.930 431 272 10 33 455 29 437 2.16e-51 180
MS.gene041778.t1 AT2G22990 30.485 433 260 14 33 455 23 424 2.85e-51 179
MS.gene041778.t1 AT2G23010 28.540 452 291 13 15 455 7 437 4.56e-51 179
MS.gene041778.t1 AT2G22980 30.324 432 255 15 33 450 26 425 1.50e-50 177
MS.gene041778.t1 AT1G73300 30.137 438 262 14 33 455 33 441 2.24e-50 177
MS.gene041778.t1 AT1G73300 30.137 438 262 14 33 455 33 441 2.24e-50 177
MS.gene041778.t1 AT3G12220 30.415 434 262 12 33 453 27 433 1.93e-49 174
MS.gene041778.t1 AT2G22920 31.122 392 240 10 33 415 25 395 2.85e-49 173
MS.gene041778.t1 AT5G36180 30.137 438 262 14 33 455 33 441 1.35e-48 172
MS.gene041778.t1 AT1G33540 30.425 447 276 14 33 455 29 464 2.75e-48 172
MS.gene041778.t1 AT5G22980 28.842 423 263 14 45 453 96 494 1.28e-47 171
MS.gene041778.t1 AT3G10450 29.540 413 261 10 51 455 4 394 1.37e-47 169
MS.gene041778.t1 AT5G09640 27.686 484 292 13 6 455 6 465 1.86e-47 170
MS.gene041778.t1 AT3G12240 29.062 437 268 15 33 455 28 436 5.07e-47 168
MS.gene041778.t1 AT3G12203 30.693 404 245 13 62 455 1 379 6.79e-47 166
MS.gene041778.t1 AT3G12230 29.195 435 270 13 33 455 27 435 1.16e-46 167
MS.gene041778.t1 AT1G33540 30.303 429 264 14 51 455 4 421 2.31e-46 166
MS.gene041778.t1 AT3G12220 29.808 416 252 12 51 453 15 403 9.55e-46 164
MS.gene041778.t1 AT2G22980 29.384 422 253 14 33 440 26 416 2.41e-45 164
MS.gene041778.t1 AT1G73290 30.633 395 234 10 33 415 32 398 3.65e-45 162
MS.gene041778.t1 AT3G45010 27.907 430 274 11 38 453 92 499 4.38e-45 164
MS.gene041778.t1 AT1G73310 28.704 432 276 12 33 455 33 441 6.36e-45 162
MS.gene041778.t1 AT2G22980 29.854 412 244 14 33 430 26 406 7.69e-45 162
MS.gene041778.t1 AT3G10450 29.557 406 257 9 33 430 29 413 1.82e-44 160
MS.gene041778.t1 AT3G10410 28.341 434 263 15 38 452 90 494 3.52e-44 162
MS.gene041778.t1 AT2G22990 31.065 338 209 10 123 455 1 319 1.25e-41 150
MS.gene041778.t1 AT2G22990 30.769 338 210 10 123 455 1 319 3.13e-41 149
MS.gene041778.t1 AT3G10450 29.124 388 246 9 51 430 4 370 1.03e-40 149
MS.gene041778.t1 AT2G22920 32.362 309 180 9 33 332 25 313 4.31e-40 146
MS.gene041778.t1 AT1G73310 29.032 403 256 10 33 427 33 413 1.65e-39 147
MS.gene041778.t1 AT2G22970 32.686 309 178 10 33 332 25 312 4.57e-39 144
MS.gene041778.t1 AT1G73280 33.829 269 160 7 33 287 33 297 1.09e-38 144
MS.gene041778.t1 AT3G12220 28.738 428 225 13 33 453 27 381 5.33e-38 142
MS.gene041778.t1 AT1G73290 32.959 267 163 6 33 287 32 294 9.34e-38 140
MS.gene041778.t1 AT1G73280 28.732 355 215 11 112 455 12 339 5.60e-35 133
MS.gene041778.t1 AT2G22980 32.090 268 164 7 33 291 26 284 1.87e-33 129
MS.gene041778.t1 AT1G15000 28.103 427 264 13 49 459 37 436 1.88e-32 128
MS.gene041778.t1 AT1G73280 28.739 341 205 11 126 455 1 314 2.84e-32 125
MS.gene041778.t1 AT5G36180 27.966 354 219 11 112 455 12 339 5.79e-31 122
MS.gene041778.t1 AT5G36180 27.966 354 219 11 112 455 12 339 5.79e-31 122
MS.gene041778.t1 AT2G22980 27.760 317 192 11 123 430 1 289 9.54e-27 109
MS.gene041778.t1 AT5G36180 27.356 329 204 10 112 430 12 315 2.45e-25 106
MS.gene041778.t1 AT5G22960 31.188 202 101 5 11 211 10 174 1.22e-24 100
MS.gene041778.t1 AT5G36180 27.089 347 207 11 112 437 12 333 1.98e-24 103
MS.gene041778.t1 AT1G73310 26.646 319 212 7 112 427 12 311 3.57e-23 100
MS.gene041778.t1 AT2G22920 26.838 272 176 8 189 455 3 256 1.07e-22 97.4
MS.gene041778.t1 AT2G27920 23.656 465 297 21 9 439 5 445 2.49e-16 81.6
MS.gene041778.t1 AT2G22960 30.147 136 90 4 321 455 53 184 1.97e-12 66.2

Find 105 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAAACTAATGGCCTTAAAT+TGG 0.173728 1.1:+68867105 None:intergenic
TAACAGGGATTCCATATATT+TGG 0.181948 1.1:-68865646 MS.gene041778:CDS
GTGATATTGTTGGGAATTAT+TGG 0.185000 1.1:-68865518 MS.gene041778:CDS
ACTTGTTTACCAGAGAAATA+AGG 0.220874 1.1:-68866259 MS.gene041778:CDS
TGAAATTCCAACACAGAAAA+TGG 0.225573 1.1:+68867291 None:intergenic
GGTTGTTCTTCAATTGCTTA+TGG 0.253357 1.1:-68867064 MS.gene041778:CDS
TGTTCAAATCCAACATTCTT+TGG 0.267824 1.1:+68867211 None:intergenic
CTGCATGTCTTCCAAATATA+TGG 0.277840 1.1:+68865635 None:intergenic
TGAAGCGCCTTCTGCACTTC+TGG 0.279971 1.1:+68865677 None:intergenic
GTTGGATTTGAACAGTATTC+AGG 0.287775 1.1:-68867202 MS.gene041778:CDS
AAACAAAACAATATAGAATA+TGG 0.298366 1.1:+68867318 None:intergenic
TGAACCGTGGACCCAATTTA+AGG 0.299323 1.1:-68867117 MS.gene041778:CDS
CTAAGAATTGCTTGTGACTT+TGG 0.299740 1.1:-68865998 MS.gene041778:CDS
GCGCTTCATGCCAATGTAAC+AGG 0.306670 1.1:-68865662 MS.gene041778:CDS
TATGGTGCTTCTGAAGAAAT+TGG 0.325012 1.1:-68867046 MS.gene041778:CDS
GTCTCCGGGTATGGGTATTC+AGG 0.330012 1.1:-68865443 MS.gene041778:intron
TTTCTGTGTTGGAATTTCAT+TGG 0.334125 1.1:-68867287 MS.gene041778:CDS
AATCCCTTAAAATTGATAAC+TGG 0.337875 1.1:+68866225 None:intergenic
TGTCAATTCCCTTATTTCTC+TGG 0.354954 1.1:+68866250 None:intergenic
CATAGAGAATTCTACATTGC+TGG 0.368294 1.1:-68866438 MS.gene041778:CDS
AACTTATTAACGCTGGTCTC+CGG 0.369243 1.1:-68865458 MS.gene041778:CDS
TTAACGCTGGTCTCCGGGTA+TGG 0.373121 1.1:-68865452 MS.gene041778:CDS
CTTGTTTACCAGAGAAATAA+GGG 0.385746 1.1:-68866258 MS.gene041778:CDS
GGATGGAGTCAAGTTTATAA+AGG 0.388461 1.1:-68864493 MS.gene041778:CDS
GGCGGAGTATAAATGCTATA+TGG 0.395551 1.1:+68865902 None:intergenic
CTGTTCCTTGATTCTCCTGC+TGG 0.401847 1.1:-68866842 MS.gene041778:CDS
CTTGATTCTCCTGCTGGTGT+TGG 0.404698 1.1:-68866836 MS.gene041778:CDS
TGATTTCAGATTCTACATAT+AGG 0.409759 1.1:-68866024 MS.gene041778:CDS
TTCTTGACAGTGATATTGTT+GGG 0.410531 1.1:-68865527 MS.gene041778:intron
TACTCTTCTGTGAAGGTTGG+TGG 0.412687 1.1:-68864514 MS.gene041778:intron
AAAACTAATGGCCTTAAATT+GGG 0.416290 1.1:+68867106 None:intergenic
TTAATAAGTTCATGATATAT+AGG 0.416930 1.1:+68865471 None:intergenic
CCATCATCAATTGGTATCCT+TGG 0.423024 1.1:-68864634 MS.gene041778:CDS
AAGAAAAGTGATTTGCCATC+AGG 0.425397 1.1:+68867007 None:intergenic
TTATGGCTTAATGGTGGTCC+TGG 0.448568 1.1:-68867085 MS.gene041778:CDS
GATGATGGTTGGTAGCTTCA+AGG 0.449314 1.1:+68864649 None:intergenic
ACAACAGATCTGTACACATT+TGG 0.450890 1.1:-68866794 MS.gene041778:CDS
TTTCTTGACAGTGATATTGT+TGG 0.454235 1.1:-68865528 MS.gene041778:intron
ACGATTATCATGACTATGTT+GGG 0.461685 1.1:-68866075 MS.gene041778:CDS
CCAACATTCTTTGGTTGCCC+TGG 0.461852 1.1:+68867220 None:intergenic
CCATTAAGCCATAAAACTAA+TGG 0.465147 1.1:+68867094 None:intergenic
ACATTTGGTGACCAGAAAAC+AGG 0.468417 1.1:-68866779 MS.gene041778:intron
GACGATTATCATGACTATGT+TGG 0.470565 1.1:-68866076 MS.gene041778:CDS
ATATAGGAAGCATAGACAAT+GGG 0.471053 1.1:+68865487 None:intergenic
CATATATTTGGAAGACATGC+AGG 0.472543 1.1:-68865634 MS.gene041778:intron
CTCACATTGGTAACAATAAG+AGG 0.473526 1.1:-68864469 MS.gene041778:CDS
ATAGAGAATTCTACATTGCT+GGG 0.479532 1.1:-68866437 MS.gene041778:CDS
GCTTCTCATTAGCTTGATGA+TGG 0.483315 1.1:+68864367 None:intergenic
AGCTACCAACCATCATCAAT+TGG 0.485261 1.1:-68864643 MS.gene041778:CDS
ATATGGAATCCCTGTTACAT+TGG 0.488606 1.1:+68865652 None:intergenic
GCCTGAAAACATTGCACTGA+TGG 0.488616 1.1:+68865962 None:intergenic
ACTTATTAACGCTGGTCTCC+GGG 0.492860 1.1:-68865457 MS.gene041778:CDS
TAACGCTGGTCTCCGGGTAT+GGG 0.495844 1.1:-68865451 MS.gene041778:CDS
CAACACCAGCAGGAGAATCA+AGG 0.496627 1.1:+68866837 None:intergenic
GATGGAGTCAAGTTTATAAA+GGG 0.496669 1.1:-68864492 MS.gene041778:CDS
AGGTCATTATGTTCCTCAGT+TGG 0.498140 1.1:-68866286 MS.gene041778:CDS
GATAAGATTAAGCAGTTACC+AGG 0.504649 1.1:-68867238 MS.gene041778:CDS
TGGTATCCTTGGTATGATAG+TGG 0.505825 1.1:-68864623 MS.gene041778:CDS
TTGGTAACAATAAGAGGTGC+TGG 0.519871 1.1:-68864463 MS.gene041778:CDS
GAATATCGAGTTGCGGTCAG+TGG 0.520379 1.1:+68864680 None:intergenic
ATGTTGGGACATTTGAGTAC+TGG 0.520555 1.1:-68866060 MS.gene041778:CDS
TAGATCATTCTTGGAGAACA+AGG 0.525636 1.1:-68864395 MS.gene041778:CDS
CCAGGGCAACCAAAGAATGT+TGG 0.526279 1.1:-68867220 MS.gene041778:CDS
CTTCTGTGAAGGTTGGTGGA+TGG 0.542653 1.1:-68864510 MS.gene041778:intron
CCATCAGGCCTAATACGAAA+AGG 0.545705 1.1:+68867022 None:intergenic
ATACACGTCAGAATGCCTTT+CGG 0.549353 1.1:+68865709 None:intergenic
TTGGTGCTACAGGTTGGAAA+TGG 0.551086 1.1:-68866106 MS.gene041778:intron
TCACTCAGAAGCGGCTTGAA+CGG 0.556715 1.1:-68865863 MS.gene041778:CDS
ATTGCTGGGGAAAGTTATGC+AGG 0.557240 1.1:-68866423 MS.gene041778:intron
GGATACCAATTGATGATGGT+TGG 0.557745 1.1:+68864638 None:intergenic
TCAGAATGCCTTTCGGTACA+CGG 0.563005 1.1:+68865716 None:intergenic
CCAAGGATACCAATTGATGA+TGG 0.563122 1.1:+68864634 None:intergenic
AGAGTTGCAGTTGCTGAGCA+AGG 0.568738 1.1:-68865935 MS.gene041778:CDS
CGCTTCATGCCAATGTAACA+GGG 0.570208 1.1:-68865661 MS.gene041778:CDS
TTTGAGTACTGGTGGACACA+TGG 0.597648 1.1:-68866049 MS.gene041778:CDS
AGTGATGCGGTATTGTTACA+AGG 0.603572 1.1:+68865881 None:intergenic
AAATTGGGTCCACGGTTCAG+TGG 0.604072 1.1:+68867121 None:intergenic
CTGTGAATGAACAGAATGGA+AGG 0.605445 1.1:-68867171 MS.gene041778:CDS
TCATATGCTCTAGACATCCA+TGG 0.607409 1.1:+68865740 None:intergenic
CAATCGTCCAGAAGTGCAGA+AGG 0.609778 1.1:-68865684 MS.gene041778:CDS
TATATAGGAAGCATAGACAA+TGG 0.610027 1.1:+68865486 None:intergenic
ATGGCCTTAAATTGGGTCCA+CGG 0.610231 1.1:+68867113 None:intergenic
GCTTCGCGGGGCTTATGAAG+AGG 0.611657 1.1:+68864430 None:intergenic
TATCATGAACTTATTAACGC+TGG 0.615510 1.1:-68865465 MS.gene041778:CDS
GTGACTGTGAATGAACAGAA+TGG 0.619017 1.1:-68867175 MS.gene041778:CDS
CATATGATCCGTGTACCGAA+AGG 0.636629 1.1:-68865724 MS.gene041778:CDS
AAAAGAATAAACGCTTCGCG+GGG 0.640750 1.1:+68864418 None:intergenic
CGTACCTGAATACCCATACC+CGG 0.640864 1.1:+68865439 None:intergenic
ATAAGATTAAGCAGTTACCA+GGG 0.641370 1.1:-68867237 MS.gene041778:CDS
AATTCTCTATGCTTATACTG+AGG 0.645681 1.1:+68866450 None:intergenic
TTGGGACATTTGAGTACTGG+TGG 0.645881 1.1:-68866057 MS.gene041778:CDS
ATCGATAGAATATCGAGTTG+CGG 0.654875 1.1:+68864673 None:intergenic
AGTTTATAAAGGGCTCACAT+TGG 0.657748 1.1:-68864482 MS.gene041778:CDS
AATAAGAGGTGCTGGACACG+AGG 0.657878 1.1:-68864455 MS.gene041778:CDS
TCCTTGGTATGATAGTGGCA+AGG 0.660717 1.1:-68864618 MS.gene041778:intron
ACCTTGCCACTATCATACCA+AGG 0.669971 1.1:+68864617 None:intergenic
TAGAGAATTCTACATTGCTG+GGG 0.672609 1.1:-68866436 MS.gene041778:CDS
TAAGCAATTGAAGAACAACC+AGG 0.684683 1.1:+68867067 None:intergenic
AATACCGCATCACTCAGAAG+CGG 0.685301 1.1:-68865872 MS.gene041778:CDS
ATTGAAGCACCACTGAACCG+TGG 0.692357 1.1:-68867130 MS.gene041778:CDS
TATAGGAAGCATAGACAATG+GGG 0.694959 1.1:+68865488 None:intergenic
CAAGCCGCTTCTGAGTGATG+CGG 0.701434 1.1:+68865868 None:intergenic
TAAACAAGTTGAGCCAACTG+AGG 0.719538 1.1:+68866273 None:intergenic
TGTGAATGAACAGAATGGAA+GGG 0.721865 1.1:-68867170 MS.gene041778:CDS
GATGCGGTATTGTTACAAGG+CGG 0.780235 1.1:+68865884 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAAAACAATATAGAATA+TGG + chr1.1:68864388-68864407 None:intergenic 15.0%
!! TTAATAAGTTCATGATATAT+AGG + chr1.1:68866235-68866254 None:intergenic 15.0%
!!! ACTTTTTTGCTTATATTTAT+CGG - chr1.1:68866314-68866333 MS.gene041778:intron 15.0%
!!! TATCAGAATTTTGATTTAAA+AGG - chr1.1:68866139-68866158 MS.gene041778:intron 15.0%
!!! TTTATGCCTATTTATTATTT+TGG - chr1.1:68864818-68864837 MS.gene041778:intron 15.0%
!! AATAAACACAACAAAAGTAA+TGG + chr1.1:68866519-68866538 None:intergenic 20.0%
!! ATAAACACAACAAAAGTAAT+GGG + chr1.1:68866518-68866537 None:intergenic 20.0%
!! ATATTATGATGTGATTTGAT+TGG + chr1.1:68866827-68866846 None:intergenic 20.0%
!! ATGTATTTGGTATATAGTTA+AGG + chr1.1:68866292-68866311 None:intergenic 20.0%
!! ATTCATTCAATTGATAAGTA+TGG + chr1.1:68865346-68865365 None:intergenic 20.0%
!! CAACATCCAAAATAATAAAT+AGG + chr1.1:68864827-68864846 None:intergenic 20.0%
!!! AAACCAGTTATCAATTTTAA+GGG - chr1.1:68865475-68865494 MS.gene041778:CDS 20.0%
!!! AAGGAACAAAGATATTTTTT+TGG + chr1.1:68866591-68866610 None:intergenic 20.0%
!!! CATATATTTTTCTTGTAAAG+TGG - chr1.1:68865218-68865237 MS.gene041778:intron 20.0%
!!! TATATATCAGTTTTCTACTT+TGG - chr1.1:68865318-68865337 MS.gene041778:intron 20.0%
!!! TATCAATTTTAAGGGATTTA+TGG - chr1.1:68865483-68865502 MS.gene041778:CDS 20.0%
!!! TATTCTTTTTAGATCATTCT+TGG - chr1.1:68867299-68867318 MS.gene041778:CDS 20.0%
!!! TCTTCTTAACTTTGATATTT+TGG - chr1.1:68866972-68866991 MS.gene041778:intron 20.0%
!!! TGAAAAATTGAATGATTTTC+AGG - chr1.1:68865397-68865416 MS.gene041778:intron 20.0%
!!! TGTTCAAGTTTATACTAATT+TGG - chr1.1:68867135-68867154 MS.gene041778:CDS 20.0%
! AACAAATTAAACACAGTTGA+TGG + chr1.1:68865922-68865941 None:intergenic 25.0%
! AATTTGTACTAGTAACATTC+GGG - chr1.1:68866719-68866738 MS.gene041778:intron 25.0%
! CAATTTGTACTAGTAACATT+CGG - chr1.1:68866718-68866737 MS.gene041778:intron 25.0%
! CTCGTTATATGATTATCATA+AGG + chr1.1:68865561-68865580 None:intergenic 25.0%
! GCATTTAGAGAAATATGAAA+TGG + chr1.1:68866654-68866673 None:intergenic 25.0%
! GTTATATGATTATCATAAGG+TGG + chr1.1:68865558-68865577 None:intergenic 25.0%
! TAGAGAAATATGAAATGGAT+GGG + chr1.1:68866649-68866668 None:intergenic 25.0%
! TATCTCAATAAATATCCACA+TGG - chr1.1:68866872-68866891 MS.gene041778:intron 25.0%
! TCAATAAATCGATAGCATAT+AGG + chr1.1:68865878-68865897 None:intergenic 25.0%
! TCATTGATCTATACAGAATA+TGG + chr1.1:68866767-68866786 None:intergenic 25.0%
! TCTGTATAGATCAATGATTA+TGG - chr1.1:68866770-68866789 MS.gene041778:intron 25.0%
! TCTTATCTGTAATCAAGAAT+TGG - chr1.1:68866946-68866965 MS.gene041778:intron 25.0%
! TGATTTCAGATTCTACATAT+AGG - chr1.1:68865679-68865698 MS.gene041778:CDS 25.0%
! TTAGAGAAATATGAAATGGA+TGG + chr1.1:68866650-68866669 None:intergenic 25.0%
!! AAAACTAATGGCCTTAAATT+GGG + chr1.1:68864600-68864619 None:intergenic 25.0%
!! AATCCCTTAAAATTGATAAC+TGG + chr1.1:68865481-68865500 None:intergenic 25.0%
!! AGCAAAAAAGTACATGTATT+TGG + chr1.1:68866305-68866324 None:intergenic 25.0%
!! CAAACCAGTTATCAATTTTA+AGG - chr1.1:68865474-68865493 MS.gene041778:CDS 25.0%
!! TAAAACTAATGGCCTTAAAT+TGG + chr1.1:68864601-68864620 None:intergenic 25.0%
!! TAAATTTTACTCTTCTGTGA+AGG - chr1.1:68867182-68867201 MS.gene041778:CDS 25.0%
!! TAGTATGTGATATCAACTTT+TGG - chr1.1:68866432-68866451 MS.gene041778:CDS 25.0%
!!! ATTTAAGGCCATTAGTTTTA+TGG - chr1.1:68864601-68864620 MS.gene041778:intron 25.0%
!!! TATGCTATCGATTTATTGAA+TGG - chr1.1:68865879-68865898 MS.gene041778:CDS 25.0%
AAGTGACACTCAAATGATTA+AGG + chr1.1:68866610-68866629 None:intergenic 30.0%
AATGCTCTTTGACATTATTG+AGG - chr1.1:68866669-68866688 MS.gene041778:intron 30.0%
AATTCTCTATGCTTATACTG+AGG + chr1.1:68865256-68865275 None:intergenic 30.0%
ACAGAATATGGAGTAATGAA+AGG + chr1.1:68866755-68866774 None:intergenic 30.0%
ACGATTATCATGACTATGTT+GGG - chr1.1:68865628-68865647 MS.gene041778:intron 30.0%
ACTTGTTTACCAGAGAAATA+AGG - chr1.1:68865444-68865463 MS.gene041778:CDS 30.0%
ATAAGATTAAGCAGTTACCA+GGG - chr1.1:68864466-68864485 MS.gene041778:CDS 30.0%
ATAGAGAATTCTACATTGCT+GGG - chr1.1:68865266-68865285 MS.gene041778:intron 30.0%
CCATTAAGCCATAAAACTAA+TGG + chr1.1:68864612-68864631 None:intergenic 30.0%
CTTGTTTACCAGAGAAATAA+GGG - chr1.1:68865445-68865464 MS.gene041778:CDS 30.0%
GAGTTTGATTATTCTGTGAT+TGG - chr1.1:68865578-68865597 MS.gene041778:intron 30.0%
GATGGAGTCAAGTTTATAAA+GGG - chr1.1:68867211-68867230 MS.gene041778:CDS 30.0%
GGATTTATGGTAAGATTGTT+AGG - chr1.1:68865496-68865515 MS.gene041778:CDS 30.0%
GTGATATTGTTGGGAATTAT+TGG - chr1.1:68866185-68866204 MS.gene041778:intron 30.0%
TAAAAAGAATAAACGCTTCG+CGG + chr1.1:68867290-68867309 None:intergenic 30.0%
TAACAGGGATTCCATATATT+TGG - chr1.1:68866057-68866076 MS.gene041778:CDS 30.0%
TATCATGAACTTATTAACGC+TGG - chr1.1:68866238-68866257 MS.gene041778:CDS 30.0%
TCTTATAAAACAAACAGCCA+TGG - chr1.1:68865946-68865965 MS.gene041778:CDS 30.0%
TGAAATTCCAACACAGAAAA+TGG + chr1.1:68864415-68864434 None:intergenic 30.0%
TGTTCAAATCCAACATTCTT+TGG + chr1.1:68864495-68864514 None:intergenic 30.0%
TTCTTGACAGTGATATTGTT+GGG - chr1.1:68866176-68866195 MS.gene041778:intron 30.0%
TTGATATCACATACTATCCA+TGG + chr1.1:68866428-68866447 None:intergenic 30.0%
TTTCTGTGTTGGAATTTCAT+TGG - chr1.1:68864416-68864435 MS.gene041778:CDS 30.0%
TTTCTTGACAGTGATATTGT+TGG - chr1.1:68866175-68866194 MS.gene041778:intron 30.0%
! AAATTGGTCCTTTTCGTATT+AGG - chr1.1:68864673-68864692 MS.gene041778:CDS 30.0%
! ATATAGGAAGCATAGACAAT+GGG + chr1.1:68866219-68866238 None:intergenic 30.0%
! TATATAGGAAGCATAGACAA+TGG + chr1.1:68866220-68866239 None:intergenic 30.0%
! TTTTCTTGAATCGTTATGCT+TGG - chr1.1:68864712-68864731 MS.gene041778:intron 30.0%
!!! CCATTAGTTTTATGGCTTAA+TGG - chr1.1:68864609-68864628 MS.gene041778:intron 30.0%
!!! TATTATTTTGGATGTTGCAG+TGG - chr1.1:68864830-68864849 MS.gene041778:intron 30.0%
!!! TTAGTTTTATGGCTTAATGG+TGG - chr1.1:68864612-68864631 MS.gene041778:intron 30.0%
AAAAAGAATAAACGCTTCGC+GGG + chr1.1:68867289-68867308 None:intergenic 35.0%
ACAACAGATCTGTACACATT+TGG - chr1.1:68864909-68864928 MS.gene041778:intron 35.0%
AGTTTATAAAGGGCTCACAT+TGG - chr1.1:68867221-68867240 MS.gene041778:CDS 35.0%
ATATGGAATCCCTGTTACAT+TGG + chr1.1:68866054-68866073 None:intergenic 35.0%
ATGTTGAACACGTTCTATTG+AGG - chr1.1:68866109-68866128 MS.gene041778:intron 35.0%
CAAAGACTGAATCTCAGAAT+CGG + chr1.1:68864751-68864770 None:intergenic 35.0%
CATAGAGAATTCTACATTGC+TGG - chr1.1:68865265-68865284 MS.gene041778:intron 35.0%
CATATATTTGGAAGACATGC+AGG - chr1.1:68866069-68866088 MS.gene041778:CDS 35.0%
CTAAGAATTGCTTGTGACTT+TGG - chr1.1:68865705-68865724 MS.gene041778:CDS 35.0%
CTGCATGTCTTCCAAATATA+TGG + chr1.1:68866071-68866090 None:intergenic 35.0%
GACGATTATCATGACTATGT+TGG - chr1.1:68865627-68865646 MS.gene041778:intron 35.0%
GATAAGATTAAGCAGTTACC+AGG - chr1.1:68864465-68864484 MS.gene041778:CDS 35.0%
GGATGGAGTCAAGTTTATAA+AGG - chr1.1:68867210-68867229 MS.gene041778:CDS 35.0%
GGTTGTTCTTCAATTGCTTA+TGG - chr1.1:68864639-68864658 MS.gene041778:CDS 35.0%
GTTGGATTTGAACAGTATTC+AGG - chr1.1:68864501-68864520 MS.gene041778:CDS 35.0%
TAAGCAATTGAAGAACAACC+AGG + chr1.1:68864639-68864658 None:intergenic 35.0%
TAGAGAATTCTACATTGCTG+GGG - chr1.1:68865267-68865286 MS.gene041778:intron 35.0%
TAGATCATTCTTGGAGAACA+AGG - chr1.1:68867308-68867327 MS.gene041778:CDS 35.0%
TGTAATGATCATGCTCATGA+AGG - chr1.1:68865089-68865108 MS.gene041778:intron 35.0%
TGTGAATGAACAGAATGGAA+GGG - chr1.1:68864533-68864552 MS.gene041778:intron 35.0%
TTGACATCTGAATACATCCA+TGG - chr1.1:68866408-68866427 MS.gene041778:intron 35.0%
TTGCTAAAGCAAAACAAAGC+TGG + chr1.1:68865129-68865148 None:intergenic 35.0%
! AAGAAAAGTGATTTGCCATC+AGG + chr1.1:68864699-68864718 None:intergenic 35.0%
! ATCGATAGAATATCGAGTTG+CGG + chr1.1:68867033-68867052 None:intergenic 35.0%
! CTCACATTGGTAACAATAAG+AGG - chr1.1:68867234-68867253 MS.gene041778:CDS 35.0%
! TACATTACCTACCTGTTTTC+TGG + chr1.1:68864938-68864957 None:intergenic 35.0%
! TATAGGAAGCATAGACAATG+GGG + chr1.1:68866218-68866237 None:intergenic 35.0%
! TATGGTGCTTCTGAAGAAAT+TGG - chr1.1:68864657-68864676 MS.gene041778:CDS 35.0%
! TGTCAATTCCCTTATTTCTC+TGG + chr1.1:68865456-68865475 None:intergenic 35.0%
! TTTGTGTCCATTTTCTGTGT+TGG - chr1.1:68864405-68864424 MS.gene041778:CDS 35.0%
! TTTTACTCTTCTGTGAAGGT+TGG - chr1.1:68867186-68867205 MS.gene041778:CDS 35.0%
AAAAGAATAAACGCTTCGCG+GGG + chr1.1:68867288-68867307 None:intergenic 40.0%
AGCTACCAACCATCATCAAT+TGG - chr1.1:68867060-68867079 MS.gene041778:CDS 40.0%
AGGTCATTATGTTCCTCAGT+TGG - chr1.1:68865417-68865436 MS.gene041778:intron 40.0%
AGTGATGCGGTATTGTTACA+AGG + chr1.1:68865825-68865844 None:intergenic 40.0%
ATACACGTCAGAATGCCTTT+CGG + chr1.1:68865997-68866016 None:intergenic 40.0%
ATGTTGGGACATTTGAGTAC+TGG - chr1.1:68865643-68865662 MS.gene041778:CDS 40.0%
CCAAGGATACCAATTGATGA+TGG + chr1.1:68867072-68867091 None:intergenic 40.0%
CCATCATCAATTGGTATCCT+TGG - chr1.1:68867069-68867088 MS.gene041778:CDS 40.0%
CGTTAGTGACACATTGACAT+TGG - chr1.1:68864995-68865014 MS.gene041778:intron 40.0%
CTGTGAATGAACAGAATGGA+AGG - chr1.1:68864532-68864551 MS.gene041778:intron 40.0%
GCTCATGAAGGATTTACTCA+TGG - chr1.1:68865101-68865120 MS.gene041778:intron 40.0%
GGCGGAGTATAAATGCTATA+TGG + chr1.1:68865804-68865823 None:intergenic 40.0%
GTGACTGTGAATGAACAGAA+TGG - chr1.1:68864528-68864547 MS.gene041778:intron 40.0%
TAAGAAAAACCAACACCAGC+AGG + chr1.1:68864879-68864898 None:intergenic 40.0%
TGGTATCCTTGGTATGATAG+TGG - chr1.1:68867080-68867099 MS.gene041778:CDS 40.0%
TTGACATTATTGAGGCTCAC+TGG - chr1.1:68866677-68866696 MS.gene041778:intron 40.0%
! AACTTATTAACGCTGGTCTC+CGG - chr1.1:68866245-68866264 MS.gene041778:CDS 40.0%
! ACATTTGGTGACCAGAAAAC+AGG - chr1.1:68864924-68864943 MS.gene041778:intron 40.0%
! TAAACAAGTTGAGCCAACTG+AGG + chr1.1:68865433-68865452 None:intergenic 40.0%
! TCATATGCTCTAGACATCCA+TGG + chr1.1:68865966-68865985 None:intergenic 40.0%
! TCCATCAGTGCAATGTTTTC+AGG - chr1.1:68865740-68865759 MS.gene041778:CDS 40.0%
! TTGAGTTTTACCACGTGTGT+CGG - chr1.1:68865042-68865061 MS.gene041778:intron 40.0%
! TTGGTAACAATAAGAGGTGC+TGG - chr1.1:68867240-68867259 MS.gene041778:CDS 40.0%
!! GGATACCAATTGATGATGGT+TGG + chr1.1:68867068-68867087 None:intergenic 40.0%
!! TATTCTGTGATTGGTGCTAC+AGG - chr1.1:68865587-68865606 MS.gene041778:intron 40.0%
!!! CTTTGATATTTTGGCTGCAG+TGG - chr1.1:68866981-68867000 MS.gene041778:intron 40.0%
AATACCGCATCACTCAGAAG+CGG - chr1.1:68865831-68865850 MS.gene041778:intron 45.0%
ACCTTGCCACTATCATACCA+AGG + chr1.1:68867089-68867108 None:intergenic 45.0%
ATTGCTGGGGAAAGTTATGC+AGG - chr1.1:68865280-68865299 MS.gene041778:intron 45.0%
CATATGATCCGTGTACCGAA+AGG - chr1.1:68865979-68865998 MS.gene041778:CDS 45.0%
CCATCAGGCCTAATACGAAA+AGG + chr1.1:68864684-68864703 None:intergenic 45.0%
CGCTTCATGCCAATGTAACA+GGG - chr1.1:68866042-68866061 MS.gene041778:CDS 45.0%
GATGCGGTATTGTTACAAGG+CGG + chr1.1:68865822-68865841 None:intergenic 45.0%
GCCTGAAAACATTGCACTGA+TGG + chr1.1:68865744-68865763 None:intergenic 45.0%
GTTTCTTGACTTTGCAGCTG+AGG - chr1.1:68865192-68865211 MS.gene041778:intron 45.0%
TACTCTTCTGTGAAGGTTGG+TGG - chr1.1:68867189-68867208 MS.gene041778:CDS 45.0%
TCAGAATGCCTTTCGGTACA+CGG + chr1.1:68865990-68866009 None:intergenic 45.0%
TGAACCGTGGACCCAATTTA+AGG - chr1.1:68864586-68864605 MS.gene041778:intron 45.0%
TTATGGCTTAATGGTGGTCC+TGG - chr1.1:68864618-68864637 MS.gene041778:intron 45.0%
! ACTTATTAACGCTGGTCTCC+GGG - chr1.1:68866246-68866265 MS.gene041778:CDS 45.0%
! ATGGCCTTAAATTGGGTCCA+CGG + chr1.1:68864593-68864612 None:intergenic 45.0%
! CAATGTGTCACTAACGTGTC+CGG + chr1.1:68864991-68865010 None:intergenic 45.0%
! CCTTTTCGTATTAGGCCTGA+TGG - chr1.1:68864681-68864700 MS.gene041778:CDS 45.0%
! TTGGTGACCAGAAAACAGGT+AGG - chr1.1:68864928-68864947 MS.gene041778:intron 45.0%
!! GATGATGGTTGGTAGCTTCA+AGG + chr1.1:68867057-68867076 None:intergenic 45.0%
!! TCCTTGGTATGATAGTGGCA+AGG - chr1.1:68867085-68867104 MS.gene041778:CDS 45.0%
!! TTGGGACATTTGAGTACTGG+TGG - chr1.1:68865646-68865665 MS.gene041778:CDS 45.0%
!! TTGGTGCTACAGGTTGGAAA+TGG - chr1.1:68865597-68865616 MS.gene041778:intron 45.0%
!! TTTGAGTACTGGTGGACACA+TGG - chr1.1:68865654-68865673 MS.gene041778:CDS 45.0%
!!! ATGGAAGGGCACTGTTTTAC+TGG - chr1.1:68864547-68864566 MS.gene041778:intron 45.0%
AAATTGGGTCCACGGTTCAG+TGG + chr1.1:68864585-68864604 None:intergenic 50.0%
AGAGTTGCAGTTGCTGAGCA+AGG - chr1.1:68865768-68865787 MS.gene041778:intron 50.0%
CAACACCAGCAGGAGAATCA+AGG + chr1.1:68864869-68864888 None:intergenic 50.0%
CCAACATTCTTTGGTTGCCC+TGG + chr1.1:68864486-68864505 None:intergenic 50.0%
CCAGGGCAACCAAAGAATGT+TGG - chr1.1:68864483-68864502 MS.gene041778:CDS 50.0%
CGTACCTGAATACCCATACC+CGG + chr1.1:68866267-68866286 None:intergenic 50.0%
CTGTTCCTTGATTCTCCTGC+TGG - chr1.1:68864861-68864880 MS.gene041778:intron 50.0%
CTTGATTCTCCTGCTGGTGT+TGG - chr1.1:68864867-68864886 MS.gene041778:intron 50.0%
GCGCTTCATGCCAATGTAAC+AGG - chr1.1:68866041-68866060 MS.gene041778:CDS 50.0%
TCACTCAGAAGCGGCTTGAA+CGG - chr1.1:68865840-68865859 MS.gene041778:intron 50.0%
TCCAATCACAGTTCGCCATG+TGG + chr1.1:68866890-68866909 None:intergenic 50.0%
TCCACATGGCGAACTGTGAT+TGG - chr1.1:68866886-68866905 MS.gene041778:intron 50.0%
! ATTGAAGCACCACTGAACCG+TGG - chr1.1:68864573-68864592 MS.gene041778:intron 50.0%
! CAATCGTCCAGAAGTGCAGA+AGG - chr1.1:68866019-68866038 MS.gene041778:CDS 50.0%
! GAATATCGAGTTGCGGTCAG+TGG + chr1.1:68867026-68867045 None:intergenic 50.0%
!! AATAAGAGGTGCTGGACACG+AGG - chr1.1:68867248-68867267 MS.gene041778:CDS 50.0%
!! CTGTGATTGGTGCTACAGGT+TGG - chr1.1:68865591-68865610 MS.gene041778:intron 50.0%
!! CTTCTGTGAAGGTTGGTGGA+TGG - chr1.1:68867193-68867212 MS.gene041778:CDS 50.0%
CAAGCCGCTTCTGAGTGATG+CGG + chr1.1:68865838-68865857 None:intergenic 55.0%
GTCACTAACGTGTCCGGTGT+TGG + chr1.1:68864985-68865004 None:intergenic 55.0%
GTCTCCGGGTATGGGTATTC+AGG - chr1.1:68866260-68866279 MS.gene041778:CDS 55.0%
TGAAACACCGCCACCAACAC+CGG - chr1.1:68864969-68864988 MS.gene041778:intron 55.0%
! ACTAACGTGTCCGGTGTTGG+TGG + chr1.1:68864982-68865001 None:intergenic 55.0%
! GTTTCGTGTCGGTGGTGCAT+AGG - chr1.1:68865064-68865083 MS.gene041778:intron 55.0%
! TAACGCTGGTCTCCGGGTAT+GGG - chr1.1:68866252-68866271 MS.gene041778:CDS 55.0%
! TGAAGCGCCTTCTGCACTTC+TGG + chr1.1:68866029-68866048 None:intergenic 55.0%
! TTAACGCTGGTCTCCGGGTA+TGG - chr1.1:68866251-68866270 MS.gene041778:CDS 55.0%
!! CACGTGTGTCGGTTTCGTGT+CGG - chr1.1:68865053-68865072 MS.gene041778:intron 55.0%
CGACACGAAACCGACACACG+TGG + chr1.1:68865055-68865074 None:intergenic 60.0%
GCTTCGCGGGGCTTATGAAG+AGG + chr1.1:68867276-68867295 None:intergenic 60.0%
!! AACGTGTCCGGTGTTGGTGG+CGG + chr1.1:68864979-68864998 None:intergenic 60.0%
!! GTGTGTCGGTTTCGTGTCGG+TGG - chr1.1:68865056-68865075 MS.gene041778:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 68864375 68867350 68864375 ID=MS.gene041778
chr1.1 mRNA 68864375 68867350 68864375 ID=MS.gene041778.t1;Parent=MS.gene041778
chr1.1 exon 68866984 68867350 68866984 ID=MS.gene041778.t1.exon1;Parent=MS.gene041778.t1
chr1.1 CDS 68866984 68867350 68866984 ID=cds.MS.gene041778.t1;Parent=MS.gene041778.t1
chr1.1 exon 68866780 68866875 68866780 ID=MS.gene041778.t1.exon2;Parent=MS.gene041778.t1
chr1.1 CDS 68866780 68866875 68866780 ID=cds.MS.gene041778.t1;Parent=MS.gene041778.t1
chr1.1 exon 68866424 68866516 68866424 ID=MS.gene041778.t1.exon3;Parent=MS.gene041778.t1
chr1.1 CDS 68866424 68866516 68866424 ID=cds.MS.gene041778.t1;Parent=MS.gene041778.t1
chr1.1 exon 68866221 68866306 68866221 ID=MS.gene041778.t1.exon4;Parent=MS.gene041778.t1
chr1.1 CDS 68866221 68866306 68866221 ID=cds.MS.gene041778.t1;Parent=MS.gene041778.t1
chr1.1 exon 68865856 68866116 68865856 ID=MS.gene041778.t1.exon5;Parent=MS.gene041778.t1
chr1.1 CDS 68865856 68866116 68865856 ID=cds.MS.gene041778.t1;Parent=MS.gene041778.t1
chr1.1 exon 68865635 68865762 68865635 ID=MS.gene041778.t1.exon6;Parent=MS.gene041778.t1
chr1.1 CDS 68865635 68865762 68865635 ID=cds.MS.gene041778.t1;Parent=MS.gene041778.t1
chr1.1 exon 68865444 68865539 68865444 ID=MS.gene041778.t1.exon7;Parent=MS.gene041778.t1
chr1.1 CDS 68865444 68865539 68865444 ID=cds.MS.gene041778.t1;Parent=MS.gene041778.t1
chr1.1 exon 68864619 68864724 68864619 ID=MS.gene041778.t1.exon8;Parent=MS.gene041778.t1
chr1.1 CDS 68864619 68864724 68864619 ID=cds.MS.gene041778.t1;Parent=MS.gene041778.t1
chr1.1 exon 68864375 68864521 68864375 ID=MS.gene041778.t1.exon9;Parent=MS.gene041778.t1
chr1.1 CDS 68864375 68864521 68864375 ID=cds.MS.gene041778.t1;Parent=MS.gene041778.t1
Gene Sequence

>MS.gene041778

ATGGGTTATTCCATATTCTATATTGTTTTGTTTGTGTCCATTTTCTGTGTTGGAATTTCATTGGCTTCTTCTATAGAAGATCAAAAGAGAGATAAGATTAAGCAGTTACCAGGGCAACCAAAGAATGTTGGATTTGAACAGTATTCAGGCTATGTGACTGTGAATGAACAGAATGGAAGGGCACTGTTTTACTGGTTAATTGAAGCACCACTGAACCGTGGACCCAATTTAAGGCCATTAGTTTTATGGCTTAATGGTGGTCCTGGTTGTTCTTCAATTGCTTATGGTGCTTCTGAAGAAATTGGTCCTTTTCGTATTAGGCCTGATGGCAAATCACTTTTCTTGAATCGTTATGCTTGGAACAATTGTAAGTCCGATTCTGAGATTCAGTCTTTGTTGCTTCGATTCGTACACAAATTTTTTTTCTTCAATTTTTGACAATATTTATGCCTATTTATTATTTTGGATGTTGCAGTGGCAAATATACTGTTCCTTGATTCTCCTGCTGGTGTTGGTTTTTCTTATTGTAATAAAACAACAGATCTGTACACATTTGGTGACCAGAAAACAGGTAGGTAATGTAGTTTGTAACTATGAAACACCGCCACCAACACCGGACACGTTAGTGACACATTGACATTGGTAACAATTTGAGAGAATAGAATAATTGAGTTTTACCACGTGTGTCGGTTTCGTGTCGGTGGTGCATAGGTTTGTAATGATCATGCTCATGAAGGATTTACTCATGGTGCCAGCTTTGTTTTGCTTTAGCAAAGAGATTTGACACGTTAATAACTTTATTGCATATGAGATCTGAGTTTCTTGACTTTGCAGCTGAGGATGCATATATTTTTCTTGTAAAGTGGTTTGAAAGATTTCCTCAGTATAAGCATAGAGAATTCTACATTGCTGGGGAAAGTTATGCAGGTGAATCAAAATCTGATATATATCAGTTTTCTACTTTGGTGCCATACTTATCAATTGAATGAATGCTTTGTACAATGAAGAATTATTCAATTTCTTGAAAAATTGAATGATTTTCAGGTCATTATGTTCCTCAGTTGGCTCAACTTGTTTACCAGAGAAATAAGGGAATTGACAAACCAGTTATCAATTTTAAGGGATTTATGGTAAGATTGTTAGGTTCATGTTTACATAAACACAATTCAATGCAACACGACCACCTTATGATAATCATATAACGAGTTTGATTATTCTGTGATTGGTGCTACAGGTTGGAAATGGTGTGACTGACGATTATCATGACTATGTTGGGACATTTGAGTACTGGTGGACACATGGTTTGATTTCAGATTCTACATATAGGATTCTAAGAATTGCTTGTGACTTTGGATCATCTCAGCATCCATCAGTGCAATGTTTTCAGGCTCTTAGAGTTGCAGTTGCTGAGCAAGGAAACATTGATCCATATAGCATTTATACTCCGCCTTGTAACAATACCGCATCACTCAGAAGCGGCTTGAACGGTCGTTATGTAAGCCTATATGCTATCGATTTATTGAATGGTTTATCAATTGTGAATGCCATCAACTGTGTTTAATTTGTTTTGATCTTATAAAACAAACAGCCATGGATGTCTAGAGCATATGATCCGTGTACCGAAAGGCATTCTGACGTGTATTTCAATCGTCCAGAAGTGCAGAAGGCGCTTCATGCCAATGTAACAGGGATTCCATATATTTGGAAGACATGCAGGTATATTATTTTCAATTAATGTTGAACACGTTCTATTGAGGTCTATTCTATCAGAATTTTGATTTAAAAGGTTTCTTATTTTCATTTCTTGACAGTGATATTGTTGGGAATTATTGGACTGATTCCCCATTGTCTATGCTTCCTATATATCATGAACTTATTAACGCTGGTCTCCGGGTATGGGTATTCAGGTACGAACCTTAACTATATACCAAATACATGTACTTTTTTGCTTATATTTATCGGAAGAAGCGAAAATTCACATAAAATGATAAAGAAAGATATATATCTCAACACTTATGAACATAATTCAACAGTTGACATCTGAATACATCCATGGATAGTATGTGATATCAACTTTTGGTAGATTGACATGTCTTACATTATCTTCTAATGTATTTTGCTTACTTTAATAGCGTCAAATCCCATTACTTTTGTTGTGTTTATTCTTTAATTCTTGAATAGTAGATTTTTATTTCAGCTTTTCAAGCACAGTGCCAAAAAAATATCTTTGTTCCTTAATCATTTGAGTGTCACTTATCACGTTTTAACAATCCCATCCATTTCATATTTCTCTAAATGCTCTTTGACATTATTGAGGCTCACTGGCTCAGCATAATTGCACTTCAATTTGTACTAGTAACATTCGGGCTTAGTTGTTCCTTTCATTACTCCATATTCTGTATAGATCAATGATTATGGACTGACAACATAATTTATGTTAGACATACATCCAATCAAATCACATCATAATATCACTTTATCATGTTAGTTTCTAAATTATCTCAATAAATATCCACATGGCGAACTGTGATTGGATACATGTGTAAATTTCTTTTACACATGCAAATTAAATCTTATCTGTAATCAAGAATTGGAACTCTTCTTAACTTTGATATTTTGGCTGCAGTGGAGACACTGATTCTGTAGTTCCACTGACCGCAACTCGATATTCTATCGATGCCTTGAAGCTACCAACCATCATCAATTGGTATCCTTGGTATGATAGTGGCAAGGTTAGTGCTAACTTCTATAAGTAAAAACTGTTCAAGTTTATACTAATTTGGTATGAATAGCAGCAAGTTTGATACTAAATTTTACTCTTCTGTGAAGGTTGGTGGATGGAGTCAAGTTTATAAAGGGCTCACATTGGTAACAATAAGAGGTGCTGGACACGAGGTTCCTCTTCATAAGCCCCGCGAAGCGTTTATTCTTTTTAGATCATTCTTGGAGAACAAGGACATGCCATCATCAAGCTAA
Protein sequence

>MS.gene041778.t1

MGYSIFYIVLFVSIFCVGISLASSIEDQKRDKIKQLPGQPKNVGFEQYSGYVTVNEQNGRALFYWLIEAPLNRGPNLRPLVLWLNGGPGCSSIAYGASEEIGPFRIRPDGKSLFLNRYAWNNLANILFLDSPAGVGFSYCNKTTDLYTFGDQKTAEDAYIFLVKWFERFPQYKHREFYIAGESYAGHYVPQLAQLVYQRNKGIDKPVINFKGFMVGNGVTDDYHDYVGTFEYWWTHGLISDSTYRILRIACDFGSSQHPSVQCFQALRVAVAEQGNIDPYSIYTPPCNNTASLRSGLNGRYPWMSRAYDPCTERHSDVYFNRPEVQKALHANVTGIPYIWKTCSDIVGNYWTDSPLSMLPIYHELINAGLRVWVFSGDTDSVVPLTATRYSIDALKLPTIINWYPWYDSGKVGGWSQVYKGLTLVTIRGAGHEVPLHKPREAFILFRSFLENKDMPSSS