Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43969.t1 | XP_003590981.1 | 98.4 | 560 | 9 | 0 | 1 | 560 | 1 | 560 | 9.00E-305 | 1055.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43969.t1 | G7I6T7 | 98.4 | 560 | 9 | 0 | 1 | 560 | 1 | 560 | 6.5e-305 | 1055.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene43969 | 0.808779 | 2.62E-50 | -1.69E-46 |
| MS.gene049283 | MS.gene43969 | 0.830103 | 3.55E-55 | -1.69E-46 |
| MS.gene049499 | MS.gene43969 | 0.837244 | 5.83E-57 | -1.69E-46 |
| MS.gene049744 | MS.gene43969 | 0.8079 | 4.03E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene43969 | 0.818267 | 2.14E-52 | -1.69E-46 |
| MS.gene050559 | MS.gene43969 | 0.821918 | 3.13E-53 | -1.69E-46 |
| MS.gene050561 | MS.gene43969 | 0.816854 | 4.46E-52 | -1.69E-46 |
| MS.gene050562 | MS.gene43969 | 0.824581 | 7.47E-54 | -1.69E-46 |
| MS.gene050646 | MS.gene43969 | 0.803748 | 3.01E-49 | -1.69E-46 |
| MS.gene051209 | MS.gene43969 | 0.814104 | 1.83E-51 | -1.69E-46 |
| MS.gene051279 | MS.gene43969 | 0.814962 | 1.18E-51 | -1.69E-46 |
| MS.gene051332 | MS.gene43969 | 0.814298 | 1.65E-51 | -1.69E-46 |
| MS.gene051699 | MS.gene43969 | 0.810301 | 1.23E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene43969 | 0.801369 | 9.30E-49 | -1.69E-46 |
| MS.gene051800 | MS.gene43969 | 0.800016 | 1.76E-48 | -1.69E-46 |
| MS.gene052037 | MS.gene43969 | 0.831611 | 1.51E-55 | -1.69E-46 |
| MS.gene052118 | MS.gene43969 | 0.813114 | 3.01E-51 | -1.69E-46 |
| MS.gene052239 | MS.gene43969 | -0.819722 | 1.00E-52 | -1.69E-46 |
| MS.gene052533 | MS.gene43969 | 0.80193 | 7.14E-49 | -1.69E-46 |
| MS.gene052609 | MS.gene43969 | 0.81224 | 4.68E-51 | -1.69E-46 |
| MS.gene053272 | MS.gene43969 | -0.809458 | 1.87E-50 | -1.69E-46 |
| MS.gene053486 | MS.gene43969 | 0.806936 | 6.46E-50 | -1.69E-46 |
| MS.gene053575 | MS.gene43969 | 0.803271 | 3.78E-49 | -1.69E-46 |
| MS.gene053620 | MS.gene43969 | 0.807075 | 6.03E-50 | -1.69E-46 |
| MS.gene05454 | MS.gene43969 | 0.821012 | 5.06E-53 | -1.69E-46 |
| MS.gene054641 | MS.gene43969 | 0.816816 | 4.55E-52 | -1.69E-46 |
| MS.gene054892 | MS.gene43969 | 0.853173 | 2.85E-61 | -1.69E-46 |
| MS.gene054893 | MS.gene43969 | 0.851377 | 9.23E-61 | -1.69E-46 |
| MS.gene054957 | MS.gene43969 | 0.800231 | 1.59E-48 | -1.69E-46 |
| MS.gene055229 | MS.gene43969 | 0.807631 | 4.60E-50 | -1.69E-46 |
| MS.gene055386 | MS.gene43969 | 0.810021 | 1.42E-50 | -1.69E-46 |
| MS.gene055724 | MS.gene43969 | 0.817231 | 3.67E-52 | -1.69E-46 |
| MS.gene056363 | MS.gene43969 | 0.844624 | 6.74E-59 | -1.69E-46 |
| MS.gene056444 | MS.gene43969 | 0.802498 | 5.45E-49 | -1.69E-46 |
| MS.gene056519 | MS.gene43969 | 0.830522 | 2.80E-55 | -1.69E-46 |
| MS.gene056699 | MS.gene43969 | 0.809977 | 1.45E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene43969 | 0.874838 | 4.94E-68 | -1.69E-46 |
| MS.gene056973 | MS.gene43969 | 0.848348 | 6.49E-60 | -1.69E-46 |
| MS.gene057174 | MS.gene43969 | 0.857653 | 1.41E-62 | -1.69E-46 |
| MS.gene057208 | MS.gene43969 | 0.804424 | 2.17E-49 | -1.69E-46 |
| MS.gene058010 | MS.gene43969 | 0.801952 | 7.06E-49 | -1.69E-46 |
| MS.gene058159 | MS.gene43969 | 0.800391 | 1.47E-48 | -1.69E-46 |
| MS.gene058279 | MS.gene43969 | 0.801854 | 7.40E-49 | -1.69E-46 |
| MS.gene058289 | MS.gene43969 | 0.846651 | 1.90E-59 | -1.69E-46 |
| MS.gene058781 | MS.gene43969 | 0.811552 | 6.61E-51 | -1.69E-46 |
| MS.gene05952 | MS.gene43969 | 0.841239 | 5.36E-58 | -1.69E-46 |
| MS.gene059634 | MS.gene43969 | 0.819104 | 1.38E-52 | -1.69E-46 |
| MS.gene05985 | MS.gene43969 | -0.838853 | 2.25E-57 | -1.69E-46 |
| MS.gene060412 | MS.gene43969 | 0.812893 | 3.37E-51 | -1.69E-46 |
| MS.gene060413 | MS.gene43969 | 0.809505 | 1.83E-50 | -1.69E-46 |
| MS.gene060522 | MS.gene43969 | 0.845511 | 3.88E-59 | -1.69E-46 |
| MS.gene060777 | MS.gene43969 | 0.809526 | 1.81E-50 | -1.69E-46 |
| MS.gene060785 | MS.gene43969 | 0.823225 | 1.55E-53 | -1.69E-46 |
| MS.gene060840 | MS.gene43969 | 0.800627 | 1.32E-48 | -1.69E-46 |
| MS.gene060933 | MS.gene43969 | 0.871222 | 8.05E-67 | -1.69E-46 |
| MS.gene060935 | MS.gene43969 | 0.838595 | 2.62E-57 | -1.69E-46 |
| MS.gene060937 | MS.gene43969 | 0.862257 | 5.76E-64 | -1.69E-46 |
| MS.gene061188 | MS.gene43969 | 0.820307 | 7.35E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene000191 | MS.gene43969 | PPI |
| MS.gene012606 | MS.gene43969 | PPI |
| MS.gene60887 | MS.gene43969 | PPI |
| MS.gene043858 | MS.gene43969 | PPI |
| MS.gene60889 | MS.gene43969 | PPI |
| MS.gene043855 | MS.gene43969 | PPI |
| MS.gene60884 | MS.gene43969 | PPI |
| MS.gene043859 | MS.gene43969 | PPI |
| MS.gene33537 | MS.gene43969 | PPI |
| MS.gene000190 | MS.gene43969 | PPI |
| MS.gene43969 | MS.gene000192 | PPI |
| MS.gene60883 | MS.gene43969 | PPI |
| MS.gene042258 | MS.gene43969 | PPI |
| MS.gene60888 | MS.gene43969 | PPI |
| MS.gene000193 | MS.gene43969 | PPI |
| MS.gene60881 | MS.gene43969 | PPI |
| MS.gene061203 | MS.gene43969 | PPI |
| MS.gene60886 | MS.gene43969 | PPI |
| MS.gene43969 | MS.gene042257 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43969.t1 | MTR_1g080370 | 98.571 | 560 | 8 | 0 | 1 | 560 | 1 | 560 | 0.0 | 1149 |
| MS.gene43969.t1 | MTR_1g080410 | 98.571 | 560 | 8 | 0 | 1 | 560 | 1 | 560 | 0.0 | 1149 |
| MS.gene43969.t1 | MTR_5g007860 | 55.903 | 576 | 225 | 7 | 5 | 558 | 37 | 605 | 0.0 | 669 |
| MS.gene43969.t1 | MTR_4g077620 | 55.185 | 569 | 240 | 8 | 1 | 558 | 3 | 567 | 0.0 | 653 |
| MS.gene43969.t1 | MTR_2g062430 | 47.611 | 565 | 264 | 12 | 6 | 558 | 8 | 552 | 3.42e-177 | 511 |
| MS.gene43969.t1 | MTR_2g067640 | 45.652 | 552 | 263 | 10 | 20 | 558 | 13 | 540 | 1.25e-171 | 497 |
| MS.gene43969.t1 | MTR_2g062410 | 46.196 | 552 | 270 | 10 | 18 | 558 | 50 | 585 | 1.57e-169 | 493 |
| MS.gene43969.t1 | MTR_2g062370 | 45.355 | 549 | 271 | 9 | 23 | 558 | 57 | 589 | 3.02e-163 | 478 |
| MS.gene43969.t1 | MTR_4g131710 | 45.009 | 551 | 272 | 10 | 23 | 558 | 51 | 585 | 9.45e-163 | 476 |
| MS.gene43969.t1 | MTR_2g062380 | 45.996 | 537 | 260 | 9 | 35 | 558 | 40 | 559 | 8.48e-157 | 460 |
| MS.gene43969.t1 | MTR_2g062340 | 44.689 | 546 | 243 | 9 | 23 | 558 | 20 | 516 | 1.28e-152 | 447 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43969.t1 | AT3G04350 | 64.510 | 572 | 186 | 7 | 1 | 560 | 1 | 567 | 0.0 | 760 |
| MS.gene43969.t1 | AT5G18490 | 64.825 | 543 | 174 | 7 | 22 | 560 | 24 | 553 | 0.0 | 737 |
| MS.gene43969.t1 | AT3G04350 | 65.421 | 535 | 171 | 6 | 35 | 560 | 16 | 545 | 0.0 | 727 |
| MS.gene43969.t1 | AT1G04090 | 54.073 | 577 | 243 | 9 | 1 | 560 | 1 | 572 | 0.0 | 655 |
| MS.gene43969.t1 | AT5G43950 | 53.578 | 573 | 242 | 9 | 1 | 558 | 1 | 564 | 0.0 | 630 |
| MS.gene43969.t1 | AT2G44260 | 45.772 | 544 | 267 | 9 | 23 | 558 | 29 | 552 | 1.08e-169 | 493 |
| MS.gene43969.t1 | AT2G44230 | 45.521 | 547 | 262 | 10 | 23 | 558 | 20 | 541 | 1.28e-168 | 489 |
| MS.gene43969.t1 | AT2G44260 | 45.677 | 532 | 261 | 9 | 35 | 558 | 71 | 582 | 3.50e-164 | 479 |
| MS.gene43969.t1 | AT3G01870 | 41.416 | 565 | 291 | 13 | 11 | 558 | 42 | 583 | 5.23e-141 | 420 |
| MS.gene43969.t1 | AT3G01880 | 41.103 | 562 | 291 | 13 | 15 | 558 | 50 | 589 | 3.84e-139 | 416 |
Find 139 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCATCAATGACACTTTA+AGG | 0.107306 | 1.3:-56854804 | None:intergenic |
| TAAACAAGTTTGAGAAAGTT+TGG | 0.235719 | 1.3:+56853855 | MS.gene43969:CDS |
| CTGAGCACAGTGGAGGTAAA+TGG | 0.247800 | 1.3:+56854923 | MS.gene43969:CDS |
| TTATTTCCAACAGAGCTTTC+TGG | 0.254169 | 1.3:+56855297 | MS.gene43969:CDS |
| CACTTAATTACTCGTTAATA+TGG | 0.260129 | 1.3:+56854077 | MS.gene43969:CDS |
| ATTCGATTTGGAGTTTATTA+AGG | 0.263278 | 1.3:+56854954 | MS.gene43969:CDS |
| AGCCAATTGTCCTTCTCCTT+TGG | 0.307063 | 1.3:-56855339 | None:intergenic |
| GCGAACTCCTATTCCAAGTT+TGG | 0.314359 | 1.3:-56855055 | None:intergenic |
| TGTCTTGATGAATAAACTAT+TGG | 0.322222 | 1.3:-56854985 | None:intergenic |
| ACAGAAAACCTAACAAATAT+TGG | 0.329471 | 1.3:-56855258 | None:intergenic |
| GATATAATGATGGTGCGTTT+TGG | 0.329648 | 1.3:+56854629 | MS.gene43969:CDS |
| CATCGAACTTCTTCAACTTT+CGG | 0.340671 | 1.3:-56854199 | None:intergenic |
| TCTTCAACTTTCGGTTCATC+TGG | 0.342527 | 1.3:-56854190 | None:intergenic |
| ATGGGTTAATGCATTCGATT+TGG | 0.345620 | 1.3:+56854942 | MS.gene43969:CDS |
| ATGATGAATGTGTTTACTTT+TGG | 0.348745 | 1.3:+56854113 | MS.gene43969:CDS |
| TCCTTCTCCTTTGGACCAGT+TGG | 0.349557 | 1.3:-56855330 | None:intergenic |
| ACATGCTTCCAATATTTGTT+AGG | 0.353415 | 1.3:+56855250 | MS.gene43969:CDS |
| AATGACACTTTAAGGGTTGC+AGG | 0.360391 | 1.3:-56854796 | None:intergenic |
| CATGCTCTCATTGAGCATTA+CGG | 0.360621 | 1.3:+56854463 | MS.gene43969:CDS |
| GGAACAATCAGCTTGAGATT+TGG | 0.364813 | 1.3:-56854026 | None:intergenic |
| GTTCATCAATGACACTTTAA+GGG | 0.377575 | 1.3:-56854803 | None:intergenic |
| GGATCAGAGTCAAAGAATTC+TGG | 0.378539 | 1.3:-56853251 | None:intergenic |
| TCTGGTGAGGAGGGGCCAAC+TGG | 0.379305 | 1.3:+56855315 | MS.gene43969:CDS |
| ATGCTCTCATTGAGCATTAC+GGG | 0.380356 | 1.3:+56854464 | MS.gene43969:CDS |
| AACTTTCGGTTCATCTGGAT+TGG | 0.384698 | 1.3:-56854185 | None:intergenic |
| TGGAGATGCACAAATTCTAA+TGG | 0.385168 | 1.3:+56853875 | MS.gene43969:CDS |
| CTGTTGGAAATAATTCAAAA+AGG | 0.390774 | 1.3:-56855287 | None:intergenic |
| AGAGGTGAAGGAAGAGAAAA+GGG | 0.395917 | 1.3:-56853278 | None:intergenic |
| AAGAGGTGAAGGAAGAGAAA+AGG | 0.400057 | 1.3:-56853279 | None:intergenic |
| TCCTCGCAACGGCTGATCAT+TGG | 0.409477 | 1.3:-56853975 | None:intergenic |
| TCATGCAGGGACTTACCTTC+AGG | 0.415789 | 1.3:+56855026 | MS.gene43969:CDS |
| TGTGGTTGGTAAGAGATGTT+TGG | 0.416589 | 1.3:+56853200 | None:intergenic |
| AGGGTTGCAGGTCCATTGAA+TGG | 0.426014 | 1.3:-56854784 | None:intergenic |
| GTTCATGTAAAACCAGCATT+AGG | 0.426763 | 1.3:+56854724 | MS.gene43969:CDS |
| CCGACGGCTTTATAACCCTT+TGG | 0.428360 | 1.3:-56854148 | None:intergenic |
| CTTCAGGGATCATCCAAACT+TGG | 0.432488 | 1.3:+56855042 | MS.gene43969:CDS |
| CGGTGAACATGTCGGTGATT+GGG | 0.432674 | 1.3:+56854843 | MS.gene43969:CDS |
| TCGGTGAACATGTCGGTGAT+TGG | 0.434338 | 1.3:+56854842 | MS.gene43969:CDS |
| GCTCAATGAGAGCATGAATC+TGG | 0.436544 | 1.3:-56854456 | None:intergenic |
| CATATTAACGAGTAATTAAG+TGG | 0.438102 | 1.3:-56854076 | None:intergenic |
| GCAACTTCACCGGAGAGCTT+TGG | 0.443367 | 1.3:+56854887 | MS.gene43969:CDS |
| TTATAACCCTTTGGAGGGTT+AGG | 0.448233 | 1.3:-56854139 | None:intergenic |
| GGATCATCCAAACTTGGAAT+AGG | 0.450282 | 1.3:+56855048 | MS.gene43969:CDS |
| GATGGCATGTATTTCTCATC+AGG | 0.457793 | 1.3:-56854505 | None:intergenic |
| CCCAAGGGATATTCTTCCAC+CGG | 0.460403 | 1.3:-56853813 | None:intergenic |
| TCCTCACCAGAAAGCTCTGT+TGG | 0.461764 | 1.3:-56855303 | None:intergenic |
| AATACACAACCTTGCGATAG+AGG | 0.468770 | 1.3:+56854307 | MS.gene43969:CDS |
| CCAAGACAGGAAAATCCATC+TGG | 0.469039 | 1.3:-56853938 | None:intergenic |
| GCATGAATCTGGTTCAGATT+CGG | 0.470765 | 1.3:-56854445 | None:intergenic |
| GAGGACACGTTCTTGTCGCT+CGG | 0.471944 | 1.3:+56853993 | MS.gene43969:CDS |
| TGAGCACAGTGGAGGTAAAT+GGG | 0.475593 | 1.3:+56854924 | MS.gene43969:CDS |
| CTTTACTGATATTGCAATGT+GGG | 0.475927 | 1.3:+56854753 | MS.gene43969:CDS |
| GAAGGAAGAGAAAAGGGAAG+TGG | 0.478043 | 1.3:-56853272 | None:intergenic |
| TGCGAGAAATAATCTTAAGA+AGG | 0.480833 | 1.3:+56854675 | MS.gene43969:CDS |
| ACGGCTTTATAACCCTTTGG+AGG | 0.486012 | 1.3:-56854145 | None:intergenic |
| TTTCGGTTCATCTGGATTGG+TGG | 0.487936 | 1.3:-56854182 | None:intergenic |
| ATTGTTGCTGCCGAGTATCT+TGG | 0.490221 | 1.3:+56855129 | MS.gene43969:CDS |
| GTCCAAAGGAGAAGGACAAT+TGG | 0.490950 | 1.3:+56855337 | MS.gene43969:CDS |
| CTCACAAACTTCTGTTAGAT+CGG | 0.493970 | 1.3:-56854230 | None:intergenic |
| GGGTTGCAGGTCCATTGAAT+GGG | 0.500640 | 1.3:-56854783 | None:intergenic |
| GCCGGTGGAAGAATATCCCT+TGG | 0.503378 | 1.3:+56853812 | MS.gene43969:CDS |
| CTACTTTGATTCTGAACAAG+TGG | 0.505519 | 1.3:+56854375 | MS.gene43969:CDS |
| CGGTGAAGTTGCTCACGCGA+AGG | 0.508371 | 1.3:-56854876 | None:intergenic |
| CATGCTAGCTATCCTCATGC+AGG | 0.510869 | 1.3:+56855012 | MS.gene43969:CDS |
| CCTTGTGGCCATTGTGGAAG+AGG | 0.512962 | 1.3:-56853296 | None:intergenic |
| CCACATTGCAATATCAGTAA+AGG | 0.513990 | 1.3:-56854752 | None:intergenic |
| TTGGTTGCCTAACCCTCCAA+AGG | 0.523651 | 1.3:+56854132 | MS.gene43969:CDS |
| AATTCTAATGGAAAGGCACT+AGG | 0.529623 | 1.3:+56853887 | MS.gene43969:CDS |
| CATGCAGGGACTTACCTTCA+GGG | 0.530671 | 1.3:+56855027 | MS.gene43969:CDS |
| AACAGAGCTTTCTGGTGAGG+AGG | 0.540070 | 1.3:+56855305 | MS.gene43969:CDS |
| GTATACTGCGGGTAATGCAA+AGG | 0.543009 | 1.3:+56854564 | MS.gene43969:CDS |
| ACAGAGCTTTCTGGTGAGGA+GGG | 0.543440 | 1.3:+56855306 | MS.gene43969:CDS |
| GTAAAGGCTCCTCCTAATGC+TGG | 0.544725 | 1.3:-56854736 | None:intergenic |
| AGGACACGTTCTTGTCGCTC+GGG | 0.549143 | 1.3:+56853994 | MS.gene43969:CDS |
| CCGGTGGAAGAATATCCCTT+GGG | 0.549609 | 1.3:+56853813 | MS.gene43969:CDS |
| AGACCTTTGGAGATTCCAGA+TGG | 0.551683 | 1.3:+56853923 | MS.gene43969:CDS |
| TTCCTTCACCTCTTCCACAA+TGG | 0.552183 | 1.3:+56853288 | MS.gene43969:CDS |
| GACTCCATCACCAAGATACT+CGG | 0.556847 | 1.3:-56855139 | None:intergenic |
| TTACTCGTTAATATGGTGCA+TGG | 0.557123 | 1.3:+56854084 | MS.gene43969:CDS |
| CGGCTTTATAACCCTTTGGA+GGG | 0.557691 | 1.3:-56854144 | None:intergenic |
| TTGTTCCGAGTCAGAATCCT+CGG | 0.559884 | 1.3:+56854042 | MS.gene43969:CDS |
| GGTGAAGTTGCTCACGCGAA+GGG | 0.560176 | 1.3:-56854875 | None:intergenic |
| ATTATTTCTCGCATCTTCAT+CGG | 0.561997 | 1.3:-56854665 | None:intergenic |
| CGTGAATCATATACAATGGT+AGG | 0.564534 | 1.3:-56855204 | None:intergenic |
| TCCAACAGAGCTTTCTGGTG+AGG | 0.565118 | 1.3:+56855302 | MS.gene43969:CDS |
| GCGAGAAATAATCTTAAGAA+GGG | 0.567421 | 1.3:+56854676 | MS.gene43969:CDS |
| ATGGCAGTAGTAACCAAGAC+AGG | 0.568573 | 1.3:-56853951 | None:intergenic |
| TTTCTCGCATCTTCATCGGT+AGG | 0.570074 | 1.3:-56854661 | None:intergenic |
| ATGCACAAATTCTAATGGAA+AGG | 0.570132 | 1.3:+56853880 | MS.gene43969:CDS |
| TATACTGCGGGTAATGCAAA+GGG | 0.571900 | 1.3:+56854565 | MS.gene43969:CDS |
| CATGTAAAACCAGCATTAGG+AGG | 0.572269 | 1.3:+56854727 | MS.gene43969:CDS |
| AACATTGAGATGAACAAGAT+CGG | 0.572272 | 1.3:+56854823 | MS.gene43969:CDS |
| TGGTTGCCTAACCCTCCAAA+GGG | 0.582899 | 1.3:+56854133 | MS.gene43969:CDS |
| CTTCGCGTGAGCAACTTCAC+CGG | 0.582952 | 1.3:+56854877 | MS.gene43969:CDS |
| TCCAATGATCAGCCGTTGCG+AGG | 0.584472 | 1.3:+56853974 | MS.gene43969:CDS |
| AAGAGCCGAGGATTCTGACT+CGG | 0.586222 | 1.3:-56854047 | None:intergenic |
| GCCAACTGGTCCAAAGGAGA+AGG | 0.588714 | 1.3:+56855329 | MS.gene43969:CDS |
| AAGGTTGTGTATTCCAAACC+TGG | 0.594362 | 1.3:-56854297 | None:intergenic |
| AATCCATCTGGAATCTCCAA+AGG | 0.594832 | 1.3:-56853926 | None:intergenic |
| ACATGCCATCATCGGTGTCG+TGG | 0.595421 | 1.3:+56854518 | MS.gene43969:CDS |
| ATAATACCTTGTGGCCATTG+TGG | 0.596330 | 1.3:-56853302 | None:intergenic |
| CTCATATATTGCAACCAACA+TGG | 0.598495 | 1.3:-56855171 | None:intergenic |
| CCTCTTCCACAATGGCCACA+AGG | 0.602749 | 1.3:+56853296 | MS.gene43969:CDS |
| GGCACAAATTTACCTGGTGG+AGG | 0.603301 | 1.3:+56854607 | MS.gene43969:CDS |
| GGTTGCAATATATGAGAGAG+TGG | 0.604682 | 1.3:+56855178 | MS.gene43969:CDS |
| CATTGAGCATTACGGGCCAA+CGG | 0.604760 | 1.3:+56854471 | MS.gene43969:CDS |
| GCAACGGCTGATCATTGGAA+TGG | 0.605139 | 1.3:-56853970 | None:intergenic |
| TGAGAAATACATGCCATCAT+CGG | 0.607689 | 1.3:+56854510 | MS.gene43969:CDS |
| CTAGCTAGAGGTGTATCTGT+CGG | 0.607900 | 1.3:+56854334 | MS.gene43969:CDS |
| TATCACGGCACAAATTTACC+TGG | 0.610377 | 1.3:+56854601 | MS.gene43969:CDS |
| AAGGAGAAGGACAATTGGCT+AGG | 0.611868 | 1.3:+56855342 | MS.gene43969:CDS |
| TAGTTTATTCATCAAGACAT+GGG | 0.614112 | 1.3:+56854989 | MS.gene43969:CDS |
| CCAAAGGGTTATAAAGCCGT+CGG | 0.615266 | 1.3:+56854148 | MS.gene43969:CDS |
| GGAGGGGCCAACTGGTCCAA+AGG | 0.615580 | 1.3:+56855323 | MS.gene43969:CDS |
| CCTGGTGGAGGATATAATGA+TGG | 0.615594 | 1.3:+56854619 | MS.gene43969:CDS |
| TCAGGATGAAAATATACCGT+TGG | 0.617396 | 1.3:-56854487 | None:intergenic |
| GGTGGTAACTACTATGCCGA+CGG | 0.618472 | 1.3:-56854164 | None:intergenic |
| CAAGTTTGGATGATCCCTGA+AGG | 0.618933 | 1.3:-56855041 | None:intergenic |
| GGTAAAGCTATAGATTATCA+CGG | 0.619614 | 1.3:+56854586 | MS.gene43969:CDS |
| CCTTTACTGATATTGCAATG+TGG | 0.624376 | 1.3:+56854752 | MS.gene43969:CDS |
| CACGGCACAAATTTACCTGG+TGG | 0.625316 | 1.3:+56854604 | MS.gene43969:CDS |
| CCATCATTATATCCTCCACC+AGG | 0.627153 | 1.3:-56854619 | None:intergenic |
| GTTGCAATATATGAGAGAGT+GGG | 0.627285 | 1.3:+56855179 | MS.gene43969:CDS |
| GGCCATTGTGGAAGAGGTGA+AGG | 0.627997 | 1.3:-56853290 | None:intergenic |
| GCTGCCGAGTATCTTGGTGA+TGG | 0.635810 | 1.3:+56855135 | MS.gene43969:CDS |
| GAAGGGAAACATAGAGAGTG+CGG | 0.636222 | 1.3:+56854693 | MS.gene43969:CDS |
| TGAAGGTAAGTCCCTGCATG+AGG | 0.636865 | 1.3:-56855024 | None:intergenic |
| ATAGTTTATTCATCAAGACA+TGG | 0.637290 | 1.3:+56854988 | MS.gene43969:CDS |
| ACAAGAACGTGTCCTCGCAA+CGG | 0.637737 | 1.3:-56853986 | None:intergenic |
| TCTGTCGGAACATTCTTCTG+TGG | 0.649136 | 1.3:+56854349 | MS.gene43969:CDS |
| AACAAGATCGGTGAACATGT+CGG | 0.653405 | 1.3:+56854835 | MS.gene43969:CDS |
| CACTTGTTCAGAATCAAAGT+AGG | 0.653816 | 1.3:-56854374 | None:intergenic |
| AGAACGTGAATCATATACAA+TGG | 0.654517 | 1.3:-56855208 | None:intergenic |
| GCTAGCATACCTCTATCGCA+AGG | 0.655324 | 1.3:-56854316 | None:intergenic |
| ATGCTAGCTATCCTCATGCA+GGG | 0.655682 | 1.3:+56855013 | MS.gene43969:CDS |
| CAGAGCTTTCTGGTGAGGAG+GGG | 0.657357 | 1.3:+56855307 | MS.gene43969:CDS |
| GAGTCATTACAGAACCATGT+TGG | 0.666649 | 1.3:+56855157 | MS.gene43969:CDS |
| TTGCAATATATGAGAGAGTG+GGG | 0.676061 | 1.3:+56855180 | MS.gene43969:CDS |
| GATAGAGGTATGCTAGCTAG+AGG | 0.685865 | 1.3:+56854322 | MS.gene43969:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAAAAATAATAGAAAA+AGG | - | chr1.3:56853339-56853358 | None:intergenic | 10.0% |
| !! | AGAAAAAAATAATAGAAAAA+GGG | - | chr1.3:56853338-56853357 | None:intergenic | 10.0% |
| !! | AAAAATAATAGAAAAAGGGA+AGG | - | chr1.3:56853334-56853353 | None:intergenic | 20.0% |
| !!! | AATACTATTTGATTTCGTTT+TGG | + | chr1.3:56853691-56853710 | MS.gene43969:intron | 20.0% |
| !!! | ATATTTGTGCTGTTTTTTAT+TGG | + | chr1.3:56853481-56853500 | MS.gene43969:intron | 20.0% |
| !!! | TGCTAAAAGTAATTTTATTC+TGG | + | chr1.3:56855086-56855105 | MS.gene43969:CDS | 20.0% |
| ! | ACAGAAAACCTAACAAATAT+TGG | - | chr1.3:56855261-56855280 | None:intergenic | 25.0% |
| ! | ATAGTTTATTCATCAAGACA+TGG | + | chr1.3:56854988-56855007 | MS.gene43969:CDS | 25.0% |
| ! | CACTTAATTACTCGTTAATA+TGG | + | chr1.3:56854077-56854096 | MS.gene43969:CDS | 25.0% |
| ! | CATATTAACGAGTAATTAAG+TGG | - | chr1.3:56854079-56854098 | None:intergenic | 25.0% |
| ! | CTGTTGGAAATAATTCAAAA+AGG | - | chr1.3:56855290-56855309 | None:intergenic | 25.0% |
| ! | TAAACAAGTTTGAGAAAGTT+TGG | + | chr1.3:56853855-56853874 | MS.gene43969:CDS | 25.0% |
| ! | TAGTTTATTCATCAAGACAT+GGG | + | chr1.3:56854989-56855008 | MS.gene43969:CDS | 25.0% |
| ! | TGTCTTGATGAATAAACTAT+TGG | - | chr1.3:56854988-56855007 | None:intergenic | 25.0% |
| !! | ATGATGAATGTGTTTACTTT+TGG | + | chr1.3:56854113-56854132 | MS.gene43969:CDS | 25.0% |
| !! | GGTATTACTGTGATTAATTT+TGG | + | chr1.3:56853502-56853521 | MS.gene43969:intron | 25.0% |
| !! | TTACTGTGTTCTTTCTATTT+TGG | + | chr1.3:56853422-56853441 | MS.gene43969:intron | 25.0% |
| !! | TTTCACATTTTATAGACCTT+TGG | + | chr1.3:56853910-56853929 | MS.gene43969:CDS | 25.0% |
| !!! | AATATTTGTTAGGTTTTCTG+TGG | + | chr1.3:56855260-56855279 | MS.gene43969:CDS | 25.0% |
| !!! | ATTCGATTTGGAGTTTATTA+AGG | + | chr1.3:56854954-56854973 | MS.gene43969:CDS | 25.0% |
| !!! | GTAGTATTTTTTGCAGATAT+TGG | + | chr1.3:56853530-56853549 | MS.gene43969:intron | 25.0% |
| !!! | TTTGAGTTGATGATTAAAAC+AGG | - | chr1.3:56853385-56853404 | None:intergenic | 25.0% |
| !!! | TTTGATTTCGTTTTGGTTAT+TGG | + | chr1.3:56853698-56853717 | MS.gene43969:intron | 25.0% |
| AACATTGAGATGAACAAGAT+CGG | + | chr1.3:56854823-56854842 | MS.gene43969:CDS | 30.0% | |
| ACATGCTTCCAATATTTGTT+AGG | + | chr1.3:56855250-56855269 | MS.gene43969:CDS | 30.0% | |
| AGAAAAATTCTTTCCAGGTT+TGG | + | chr1.3:56854284-56854303 | MS.gene43969:CDS | 30.0% | |
| AGAACGTGAATCATATACAA+TGG | - | chr1.3:56855211-56855230 | None:intergenic | 30.0% | |
| ATGCACAAATTCTAATGGAA+AGG | + | chr1.3:56853880-56853899 | MS.gene43969:CDS | 30.0% | |
| CTTTACTGATATTGCAATGT+GGG | + | chr1.3:56854753-56854772 | MS.gene43969:CDS | 30.0% | |
| GCGAGAAATAATCTTAAGAA+GGG | + | chr1.3:56854676-56854695 | MS.gene43969:CDS | 30.0% | |
| GGTAAAGCTATAGATTATCA+CGG | + | chr1.3:56854586-56854605 | MS.gene43969:CDS | 30.0% | |
| GTCAAAGAAAAATTCTTTCC+AGG | + | chr1.3:56854279-56854298 | MS.gene43969:CDS | 30.0% | |
| GTTCATCAATGACACTTTAA+GGG | - | chr1.3:56854806-56854825 | None:intergenic | 30.0% | |
| TGCGAGAAATAATCTTAAGA+AGG | + | chr1.3:56854675-56854694 | MS.gene43969:CDS | 30.0% | |
| TGTTCATCAATGACACTTTA+AGG | - | chr1.3:56854807-56854826 | None:intergenic | 30.0% | |
| ! | ATTATTTCTCGCATCTTCAT+CGG | - | chr1.3:56854668-56854687 | None:intergenic | 30.0% |
| !! | AGGTTGATAATAATACCTTG+TGG | - | chr1.3:56853314-56853333 | None:intergenic | 30.0% |
| !! | TGTAACTTGTATTTTCCCAA+GGG | - | chr1.3:56853831-56853850 | None:intergenic | 30.0% |
| !! | TTGTAACTTGTATTTTCCCA+AGG | - | chr1.3:56853832-56853851 | None:intergenic | 30.0% |
| CACTTGTTCAGAATCAAAGT+AGG | - | chr1.3:56854377-56854396 | None:intergenic | 35.0% | |
| CATCGAACTTCTTCAACTTT+CGG | - | chr1.3:56854202-56854221 | None:intergenic | 35.0% | |
| CCACATTGCAATATCAGTAA+AGG | - | chr1.3:56854755-56854774 | None:intergenic | 35.0% | |
| CCTTTACTGATATTGCAATG+TGG | + | chr1.3:56854752-56854771 | MS.gene43969:CDS | 35.0% | |
| CGTGAATCATATACAATGGT+AGG | - | chr1.3:56855207-56855226 | None:intergenic | 35.0% | |
| CTACTTTGATTCTGAACAAG+TGG | + | chr1.3:56854375-56854394 | MS.gene43969:CDS | 35.0% | |
| CTCACAAACTTCTGTTAGAT+CGG | - | chr1.3:56854233-56854252 | None:intergenic | 35.0% | |
| CTCATATATTGCAACCAACA+TGG | - | chr1.3:56855174-56855193 | None:intergenic | 35.0% | |
| GTTCATGTAAAACCAGCATT+AGG | + | chr1.3:56854724-56854743 | MS.gene43969:CDS | 35.0% | |
| GTTGCAATATATGAGAGAGT+GGG | + | chr1.3:56855179-56855198 | MS.gene43969:CDS | 35.0% | |
| TCAGGATGAAAATATACCGT+TGG | - | chr1.3:56854490-56854509 | None:intergenic | 35.0% | |
| TGAGAAATACATGCCATCAT+CGG | + | chr1.3:56854510-56854529 | MS.gene43969:CDS | 35.0% | |
| TGGAGATGCACAAATTCTAA+TGG | + | chr1.3:56853875-56853894 | MS.gene43969:CDS | 35.0% | |
| TTACTCGTTAATATGGTGCA+TGG | + | chr1.3:56854084-56854103 | MS.gene43969:CDS | 35.0% | |
| TTATTTCCAACAGAGCTTTC+TGG | + | chr1.3:56855297-56855316 | MS.gene43969:CDS | 35.0% | |
| TTGCAATATATGAGAGAGTG+GGG | + | chr1.3:56855180-56855199 | MS.gene43969:CDS | 35.0% | |
| ! | ATGGGTTAATGCATTCGATT+TGG | + | chr1.3:56854942-56854961 | MS.gene43969:CDS | 35.0% |
| ! | TGGAGCAATTTTGTATACTG+CGG | + | chr1.3:56854552-56854571 | MS.gene43969:CDS | 35.0% |
| !! | AATTCTAATGGAAAGGCACT+AGG | + | chr1.3:56853887-56853906 | MS.gene43969:CDS | 35.0% |
| !! | GATATAATGATGGTGCGTTT+TGG | + | chr1.3:56854629-56854648 | MS.gene43969:CDS | 35.0% |
| !!! | TGGTTTTGAGTGTTCTTGTT+GGG | + | chr1.3:56853220-56853239 | MS.gene43969:CDS | 35.0% |
| !!! | TTGGTTTTGAGTGTTCTTGT+TGG | + | chr1.3:56853219-56853238 | MS.gene43969:CDS | 35.0% |
| AAAAACAGACCAAAGCTCTC+CGG | - | chr1.3:56854899-56854918 | None:intergenic | 40.0% | |
| AACAAGATCGGTGAACATGT+CGG | + | chr1.3:56854835-56854854 | MS.gene43969:CDS | 40.0% | |
| AACTTTCGGTTCATCTGGAT+TGG | - | chr1.3:56854188-56854207 | None:intergenic | 40.0% | |
| AAGAGGTGAAGGAAGAGAAA+AGG | - | chr1.3:56853282-56853301 | None:intergenic | 40.0% | |
| AAGGTTGTGTATTCCAAACC+TGG | - | chr1.3:56854300-56854319 | None:intergenic | 40.0% | |
| AATACACAACCTTGCGATAG+AGG | + | chr1.3:56854307-56854326 | MS.gene43969:CDS | 40.0% | |
| AGAGGTGAAGGAAGAGAAAA+GGG | - | chr1.3:56853281-56853300 | None:intergenic | 40.0% | |
| ATAATACCTTGTGGCCATTG+TGG | - | chr1.3:56853305-56853324 | None:intergenic | 40.0% | |
| ATGCTCTCATTGAGCATTAC+GGG | + | chr1.3:56854464-56854483 | MS.gene43969:CDS | 40.0% | |
| CATGCTCTCATTGAGCATTA+CGG | + | chr1.3:56854463-56854482 | MS.gene43969:CDS | 40.0% | |
| CATGTAAAACCAGCATTAGG+AGG | + | chr1.3:56854727-56854746 | MS.gene43969:CDS | 40.0% | |
| GAGTCATTACAGAACCATGT+TGG | + | chr1.3:56855157-56855176 | MS.gene43969:CDS | 40.0% | |
| GATGGCATGTATTTCTCATC+AGG | - | chr1.3:56854508-56854527 | None:intergenic | 40.0% | |
| GGAACAATCAGCTTGAGATT+TGG | - | chr1.3:56854029-56854048 | None:intergenic | 40.0% | |
| GGATCAGAGTCAAAGAATTC+TGG | - | chr1.3:56853254-56853273 | None:intergenic | 40.0% | |
| GGATCATCCAAACTTGGAAT+AGG | + | chr1.3:56855048-56855067 | MS.gene43969:CDS | 40.0% | |
| GGTTGCAATATATGAGAGAG+TGG | + | chr1.3:56855178-56855197 | MS.gene43969:CDS | 40.0% | |
| TATACTGCGGGTAATGCAAA+GGG | + | chr1.3:56854565-56854584 | MS.gene43969:CDS | 40.0% | |
| TATCACGGCACAAATTTACC+TGG | + | chr1.3:56854601-56854620 | MS.gene43969:CDS | 40.0% | |
| TCTTCAACTTTCGGTTCATC+TGG | - | chr1.3:56854193-56854212 | None:intergenic | 40.0% | |
| ! | AATCCATCTGGAATCTCCAA+AGG | - | chr1.3:56853929-56853948 | None:intergenic | 40.0% |
| ! | AATGACACTTTAAGGGTTGC+AGG | - | chr1.3:56854799-56854818 | None:intergenic | 40.0% |
| ! | GCATGAATCTGGTTCAGATT+CGG | - | chr1.3:56854448-56854467 | None:intergenic | 40.0% |
| ! | GGAGCAATTTTGTATACTGC+GGG | + | chr1.3:56854553-56854572 | MS.gene43969:CDS | 40.0% |
| ! | TTATAACCCTTTGGAGGGTT+AGG | - | chr1.3:56854142-56854161 | None:intergenic | 40.0% |
| !!! | GTGTCGTGGTTTTTCAAGAA+TGG | + | chr1.3:56854532-56854551 | MS.gene43969:CDS | 40.0% |
| !!! | GTTTTTTTCTCTGAGCACAG+TGG | + | chr1.3:56854913-56854932 | MS.gene43969:CDS | 40.0% |
| !!! | TGGGTTTTTTGCCCATTCAA+TGG | + | chr1.3:56854772-56854791 | MS.gene43969:CDS | 40.0% |
| AAAAACCACGACACCGATGA+TGG | - | chr1.3:56854526-56854545 | None:intergenic | 45.0% | |
| AAGGAGAAGGACAATTGGCT+AGG | + | chr1.3:56855342-56855361 | MS.gene43969:CDS | 45.0% | |
| AGCCAATTGTCCTTCTCCTT+TGG | - | chr1.3:56855342-56855361 | None:intergenic | 45.0% | |
| AGCTTGTGAGTGATCTACTC+AGG | + | chr1.3:56853779-56853798 | MS.gene43969:intron | 45.0% | |
| ATGCTAGCTATCCTCATGCA+GGG | + | chr1.3:56855013-56855032 | MS.gene43969:CDS | 45.0% | |
| ATGGCAGTAGTAACCAAGAC+AGG | - | chr1.3:56853954-56853973 | None:intergenic | 45.0% | |
| ATTGTTGCTGCCGAGTATCT+TGG | + | chr1.3:56855129-56855148 | MS.gene43969:CDS | 45.0% | |
| CAAGTTTGGATGATCCCTGA+AGG | - | chr1.3:56855044-56855063 | None:intergenic | 45.0% | |
| CCAAAGGGTTATAAAGCCGT+CGG | + | chr1.3:56854148-56854167 | MS.gene43969:CDS | 45.0% | |
| CCAAGACAGGAAAATCCATC+TGG | - | chr1.3:56853941-56853960 | None:intergenic | 45.0% | |
| CCATCATTATATCCTCCACC+AGG | - | chr1.3:56854622-56854641 | None:intergenic | 45.0% | |
| CCTGGTGGAGGATATAATGA+TGG | + | chr1.3:56854619-56854638 | MS.gene43969:CDS | 45.0% | |
| CTTCAGGGATCATCCAAACT+TGG | + | chr1.3:56855042-56855061 | MS.gene43969:CDS | 45.0% | |
| GAAGGAAGAGAAAAGGGAAG+TGG | - | chr1.3:56853275-56853294 | None:intergenic | 45.0% | |
| GAAGGGAAACATAGAGAGTG+CGG | + | chr1.3:56854693-56854712 | MS.gene43969:CDS | 45.0% | |
| GACTCCATCACCAAGATACT+CGG | - | chr1.3:56855142-56855161 | None:intergenic | 45.0% | |
| GCGAACTCCTATTCCAAGTT+TGG | - | chr1.3:56855058-56855077 | None:intergenic | 45.0% | |
| GTATACTGCGGGTAATGCAA+AGG | + | chr1.3:56854564-56854583 | MS.gene43969:CDS | 45.0% | |
| GTCCAAAGGAGAAGGACAAT+TGG | + | chr1.3:56855337-56855356 | MS.gene43969:CDS | 45.0% | |
| TCTGTCGGAACATTCTTCTG+TGG | + | chr1.3:56854349-56854368 | MS.gene43969:CDS | 45.0% | |
| TGAGCACAGTGGAGGTAAAT+GGG | + | chr1.3:56854924-56854943 | MS.gene43969:CDS | 45.0% | |
| TTCCTTCACCTCTTCCACAA+TGG | + | chr1.3:56853288-56853307 | MS.gene43969:CDS | 45.0% | |
| TTGTGAGTGATCTACTCAGG+TGG | + | chr1.3:56853782-56853801 | MS.gene43969:intron | 45.0% | |
| TTGTTCCGAGTCAGAATCCT+CGG | + | chr1.3:56854042-56854061 | MS.gene43969:CDS | 45.0% | |
| TTTCTCGCATCTTCATCGGT+AGG | - | chr1.3:56854664-56854683 | None:intergenic | 45.0% | |
| ! | ACGGCTTTATAACCCTTTGG+AGG | - | chr1.3:56854148-56854167 | None:intergenic | 45.0% |
| ! | AGACCTTTGGAGATTCCAGA+TGG | + | chr1.3:56853923-56853942 | MS.gene43969:CDS | 45.0% |
| ! | CGGCTTTATAACCCTTTGGA+GGG | - | chr1.3:56854147-56854166 | None:intergenic | 45.0% |
| ! | CTAGCTAGAGGTGTATCTGT+CGG | + | chr1.3:56854334-56854353 | MS.gene43969:CDS | 45.0% |
| ! | GATAGAGGTATGCTAGCTAG+AGG | + | chr1.3:56854322-56854341 | MS.gene43969:CDS | 45.0% |
| ! | GCTCAATGAGAGCATGAATC+TGG | - | chr1.3:56854459-56854478 | None:intergenic | 45.0% |
| ! | TTTCGGTTCATCTGGATTGG+TGG | - | chr1.3:56854185-56854204 | None:intergenic | 45.0% |
| ! | TTTTTCTCTGAGCACAGTGG+AGG | + | chr1.3:56854916-56854935 | MS.gene43969:CDS | 45.0% |
| !! | AAGTGGCTTTTTAAGAGCCG+AGG | - | chr1.3:56854062-56854081 | None:intergenic | 45.0% |
| !! | CCAGATGGATTTTCCTGTCT+TGG | + | chr1.3:56853938-56853957 | MS.gene43969:CDS | 45.0% |
| AAGAGCCGAGGATTCTGACT+CGG | - | chr1.3:56854050-56854069 | None:intergenic | 50.0% | |
| ACAAGAACGTGTCCTCGCAA+CGG | - | chr1.3:56853989-56854008 | None:intergenic | 50.0% | |
| AGGGTTGCAGGTCCATTGAA+TGG | - | chr1.3:56854787-56854806 | None:intergenic | 50.0% | |
| CACGGCACAAATTTACCTGG+TGG | + | chr1.3:56854604-56854623 | MS.gene43969:CDS | 50.0% | |
| CATGCAGGGACTTACCTTCA+GGG | + | chr1.3:56855027-56855046 | MS.gene43969:CDS | 50.0% | |
| CATGCTAGCTATCCTCATGC+AGG | + | chr1.3:56855012-56855031 | MS.gene43969:CDS | 50.0% | |
| CATTGAGCATTACGGGCCAA+CGG | + | chr1.3:56854471-56854490 | MS.gene43969:CDS | 50.0% | |
| CCCAAGGGATATTCTTCCAC+CGG | - | chr1.3:56853816-56853835 | None:intergenic | 50.0% | |
| CCGGTGGAAGAATATCCCTT+GGG | + | chr1.3:56853813-56853832 | MS.gene43969:CDS | 50.0% | |
| CGGTGAACATGTCGGTGATT+GGG | + | chr1.3:56854843-56854862 | MS.gene43969:CDS | 50.0% | |
| CTGAGCACAGTGGAGGTAAA+TGG | + | chr1.3:56854923-56854942 | MS.gene43969:CDS | 50.0% | |
| GCAACGGCTGATCATTGGAA+TGG | - | chr1.3:56853973-56853992 | None:intergenic | 50.0% | |
| GCTAGCATACCTCTATCGCA+AGG | - | chr1.3:56854319-56854338 | None:intergenic | 50.0% | |
| GGCACAAATTTACCTGGTGG+AGG | + | chr1.3:56854607-56854626 | MS.gene43969:CDS | 50.0% | |
| GGGTTGCAGGTCCATTGAAT+GGG | - | chr1.3:56854786-56854805 | None:intergenic | 50.0% | |
| GGTGGTAACTACTATGCCGA+CGG | - | chr1.3:56854167-56854186 | None:intergenic | 50.0% | |
| GTAAAGGCTCCTCCTAATGC+TGG | - | chr1.3:56854739-56854758 | None:intergenic | 50.0% | |
| TCATGCAGGGACTTACCTTC+AGG | + | chr1.3:56855026-56855045 | MS.gene43969:CDS | 50.0% | |
| TCCTCACCAGAAAGCTCTGT+TGG | - | chr1.3:56855306-56855325 | None:intergenic | 50.0% | |
| TCCTTCTCCTTTGGACCAGT+TGG | - | chr1.3:56855333-56855352 | None:intergenic | 50.0% | |
| TCGGTGAACATGTCGGTGAT+TGG | + | chr1.3:56854842-56854861 | MS.gene43969:CDS | 50.0% | |
| TGAAGGTAAGTCCCTGCATG+AGG | - | chr1.3:56855027-56855046 | None:intergenic | 50.0% | |
| TGAGTGATCTACTCAGGTGG+TGG | + | chr1.3:56853785-56853804 | MS.gene43969:intron | 50.0% | |
| TGGTTGCCTAACCCTCCAAA+GGG | + | chr1.3:56854133-56854152 | MS.gene43969:CDS | 50.0% | |
| TTGGTTGCCTAACCCTCCAA+AGG | + | chr1.3:56854132-56854151 | MS.gene43969:CDS | 50.0% | |
| ! | AACAGAGCTTTCTGGTGAGG+AGG | + | chr1.3:56855305-56855324 | MS.gene43969:CDS | 50.0% |
| ! | ACAGAGCTTTCTGGTGAGGA+GGG | + | chr1.3:56855306-56855325 | MS.gene43969:CDS | 50.0% |
| ! | CCGACGGCTTTATAACCCTT+TGG | - | chr1.3:56854151-56854170 | None:intergenic | 50.0% |
| ! | TCCAACAGAGCTTTCTGGTG+AGG | + | chr1.3:56855302-56855321 | MS.gene43969:CDS | 50.0% |
| !! | TACTCAGGTGGTGGTTTTGC+CGG | + | chr1.3:56853794-56853813 | MS.gene43969:intron | 50.0% |
| AGGACACGTTCTTGTCGCTC+GGG | + | chr1.3:56853994-56854013 | MS.gene43969:CDS | 55.0% | |
| CCTCTTCCACAATGGCCACA+AGG | + | chr1.3:56853296-56853315 | MS.gene43969:CDS | 55.0% | |
| CCTTGTGGCCATTGTGGAAG+AGG | - | chr1.3:56853299-56853318 | None:intergenic | 55.0% | |
| CTTCGCGTGAGCAACTTCAC+CGG | + | chr1.3:56854877-56854896 | MS.gene43969:CDS | 55.0% | |
| GAGGACACGTTCTTGTCGCT+CGG | + | chr1.3:56853993-56854012 | MS.gene43969:CDS | 55.0% | |
| GCAACTTCACCGGAGAGCTT+TGG | + | chr1.3:56854887-56854906 | MS.gene43969:CDS | 55.0% | |
| GCCAACTGGTCCAAAGGAGA+AGG | + | chr1.3:56855329-56855348 | MS.gene43969:CDS | 55.0% | |
| GCCGGTGGAAGAATATCCCT+TGG | + | chr1.3:56853812-56853831 | MS.gene43969:CDS | 55.0% | |
| GCTGCCGAGTATCTTGGTGA+TGG | + | chr1.3:56855135-56855154 | MS.gene43969:CDS | 55.0% | |
| GGCCATTGTGGAAGAGGTGA+AGG | - | chr1.3:56853293-56853312 | None:intergenic | 55.0% | |
| GGTGAAGTTGCTCACGCGAA+GGG | - | chr1.3:56854878-56854897 | None:intergenic | 55.0% | |
| TCCAATGATCAGCCGTTGCG+AGG | + | chr1.3:56853974-56853993 | MS.gene43969:CDS | 55.0% | |
| TCCTCGCAACGGCTGATCAT+TGG | - | chr1.3:56853978-56853997 | None:intergenic | 55.0% | |
| ! | CAGAGCTTTCTGGTGAGGAG+GGG | + | chr1.3:56855307-56855326 | MS.gene43969:CDS | 55.0% |
| !! | ACATGCCATCATCGGTGTCG+TGG | + | chr1.3:56854518-56854537 | MS.gene43969:CDS | 55.0% |
| CGGTGAAGTTGCTCACGCGA+AGG | - | chr1.3:56854879-56854898 | None:intergenic | 60.0% | |
| !! | TCAGGTGGTGGTTTTGCCGG+TGG | + | chr1.3:56853797-56853816 | MS.gene43969:intron | 60.0% |
| GGAGGGGCCAACTGGTCCAA+AGG | + | chr1.3:56855323-56855342 | MS.gene43969:CDS | 65.0% | |
| TCTGGTGAGGAGGGGCCAAC+TGG | + | chr1.3:56855315-56855334 | MS.gene43969:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 56853215 | 56855380 | 56853215 | ID=MS.gene43969 |
| chr1.3 | mRNA | 56853215 | 56855380 | 56853215 | ID=MS.gene43969.t1;Parent=MS.gene43969 |
| chr1.3 | exon | 56853215 | 56853317 | 56853215 | ID=MS.gene43969.t1.exon1;Parent=MS.gene43969.t1 |
| chr1.3 | CDS | 56853215 | 56853317 | 56853215 | ID=cds.MS.gene43969.t1;Parent=MS.gene43969.t1 |
| chr1.3 | exon | 56853801 | 56855380 | 56853801 | ID=MS.gene43969.t1.exon2;Parent=MS.gene43969.t1 |
| chr1.3 | CDS | 56853801 | 56855380 | 56853801 | ID=cds.MS.gene43969.t1;Parent=MS.gene43969.t1 |
| Gene Sequence |
| Protein sequence |
