AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050307

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050307.t1 MTR_7g104790 77.989 368 71 7 15 378 40 401 0.0 575
MS.gene050307.t1 MTR_7g104790 77.989 368 71 7 15 378 16 377 0.0 573
MS.gene050307.t1 MTR_7g104785 76.243 362 75 5 15 375 17 368 0.0 538
MS.gene050307.t1 MTR_1g059840 61.214 379 139 5 1 376 1 374 2.57e-163 462
MS.gene050307.t1 MTR_7g104760 81.944 144 9 1 214 357 14 140 1.25e-79 241
MS.gene050307.t1 MTR_2g020080 29.297 256 155 10 79 321 3 245 2.06e-16 79.3
MS.gene050307.t1 MTR_3g114970 25.672 335 183 16 33 328 5 312 3.56e-13 70.5
MS.gene050307.t1 MTR_2g034630 26.316 266 129 11 115 370 143 351 1.17e-12 68.9
MS.gene050307.t1 MTR_2g015760 33.784 148 85 6 31 171 13 154 1.83e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050307.t1 AT1G57790 45.217 345 175 8 33 373 13 347 1.24e-92 281
MS.gene050307.t1 AT3G56470 39.884 346 185 9 31 371 27 354 9.07e-78 244
MS.gene050307.t1 AT4G00893 38.504 361 209 8 18 373 30 382 1.43e-72 231
MS.gene050307.t1 AT4G10660 41.275 298 163 7 61 353 3 293 3.00e-64 207
MS.gene050307.t1 AT4G12370 39.739 307 170 9 80 378 1 300 1.66e-62 202
MS.gene050307.t1 AT1G49360 33.676 389 221 14 10 375 64 438 7.85e-49 171
MS.gene050307.t1 AT1G49360 33.676 389 221 14 10 375 87 461 8.66e-49 172
MS.gene050307.t1 AT1G49360 34.986 363 201 13 36 375 8 358 1.17e-48 169
MS.gene050307.t1 AT1G49360 34.986 363 201 13 36 375 8 358 1.17e-48 169
MS.gene050307.t1 AT1G49360 34.986 363 201 13 36 375 8 358 1.17e-48 169
MS.gene050307.t1 AT4G10695 41.538 195 110 3 45 239 1 191 6.21e-43 149
MS.gene050307.t1 AT4G10695 41.538 195 110 3 45 239 1 191 6.21e-43 149
MS.gene050307.t1 AT3G18720 33.660 306 181 10 35 327 51 347 9.21e-43 153
MS.gene050307.t1 AT4G12382 43.750 128 70 1 32 159 9 134 2.04e-32 119
MS.gene050307.t1 AT4G12382 43.750 128 70 1 32 159 9 134 2.04e-32 119
MS.gene050307.t1 AT4G10700 42.742 124 58 3 257 371 119 238 2.25e-21 92.4
MS.gene050307.t1 AT4G10700 43.182 88 48 1 61 148 3 88 2.56e-18 84.0
MS.gene050307.t1 AT2G44735 34.395 157 87 5 134 287 109 252 1.13e-15 78.2
MS.gene050307.t1 AT4G22660 32.192 146 80 6 32 165 9 147 1.06e-12 69.3
MS.gene050307.t1 AT5G66830 24.107 336 197 17 33 328 20 337 5.79e-11 63.9
MS.gene050307.t1 AT4G22035 29.921 127 82 3 32 154 12 135 5.88e-11 62.8

Find 82 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTTGGAATTTCCCTTTA+AGG 0.142001 7.2:+8173124 None:intergenic
AGATCTAGCTTGAAAATTAT+TGG 0.205921 7.2:+8172721 None:intergenic
TTCCCTAAAGTCCGTTTCTA+TGG 0.238841 7.2:-8172583 MS.gene050307:CDS
TTCATCAATCGCACGATGTC+GGG 0.268005 7.2:-8173912 None:intergenic
TTTCCATAGAAACGGACTTT+AGG 0.268523 7.2:+8172580 None:intergenic
ATCACACTTCCAAGCCTTAA+AGG 0.269832 7.2:-8173138 MS.gene050307:CDS
GACCTATTCCGTTGAGTTGC+CGG 0.312907 7.2:-8173271 MS.gene050307:CDS
ATCCATCCAGCAAAGTCTTT+TGG 0.316332 7.2:+8172454 None:intergenic
AGAATTGTTCTTGTCTCGTT+TGG 0.335751 7.2:-8173442 MS.gene050307:CDS
GATCTAGCTTGAAAATTATT+GGG 0.338308 7.2:+8172722 None:intergenic
CTCTATCATAAAACTCTCTT+TGG 0.347384 7.2:+8172789 None:intergenic
TTCCATAGAAACGGACTTTA+GGG 0.349581 7.2:+8172581 None:intergenic
AGAACTCTCTACTAGGCATT+TGG 0.354406 7.2:+8172828 None:intergenic
TCTTGTCTCGTTTGGATGTT+GGG 0.359047 7.2:-8173434 MS.gene050307:CDS
CACAAGAAAAGGCAGCAATT+TGG 0.361791 7.2:+8173109 None:intergenic
TGTTTATGGGCTGCCGCCAC+TGG 0.381404 7.2:+8173196 None:intergenic
ACACTCCAAGTATATTCAAT+TGG 0.383118 7.2:+8172868 None:intergenic
CAAGCTAGATCTGACACTAA+TGG 0.386785 7.2:-8172710 MS.gene050307:CDS
GCTTAGTGGGATAATATCTA+TGG 0.399107 7.2:+8172530 None:intergenic
ACTATAAACGTATGTTATCA+TGG 0.409741 7.2:-8173024 MS.gene050307:CDS
TTGACCCAATTGAATATACT+TGG 0.417142 7.2:-8172873 MS.gene050307:CDS
TTCCGTTGAGTTGCCGGAGT+TGG 0.418573 7.2:-8173265 MS.gene050307:CDS
TGGAATTTCCCTTTAAGGCT+TGG 0.422941 7.2:+8173129 None:intergenic
GAACTCTCTACTAGGCATTT+GGG 0.427224 7.2:+8172829 None:intergenic
TTCTTGTCTCGTTTGGATGT+TGG 0.428497 7.2:-8173435 MS.gene050307:CDS
GAACCACCAAAAGACTTTGC+TGG 0.430582 7.2:-8172460 MS.gene050307:CDS
TCGCAATAGAACTCTCTACT+AGG 0.437041 7.2:+8172821 None:intergenic
CATAAGTTCTCAAAAGCATC+TGG 0.443325 7.2:+8172487 None:intergenic
TCACACTTCCAAGCCTTAAA+GGG 0.458726 7.2:-8173137 MS.gene050307:CDS
CTCCGGCAACTCAACGGAAT+AGG 0.459249 7.2:+8173269 None:intergenic
AAAGAGGTGAGAACACTAGA+TGG 0.470190 7.2:-8172682 MS.gene050307:CDS
AACAATTCTAAGAGTTCCAC+AGG 0.473018 7.2:+8173456 None:intergenic
GTTATCATGGGGCAAAAGAA+TGG 0.474220 7.2:-8173011 MS.gene050307:CDS
CATTCTAGGTCTTATGTCAC+TGG 0.479562 7.2:-8172628 MS.gene050307:CDS
AATACATAAGCCAAGGTGAT+TGG 0.482476 7.2:+8173343 None:intergenic
TGATGTTGGAGCACAAGAAA+AGG 0.485677 7.2:+8173098 None:intergenic
GTGATCAGATCACTAGTAAA+GGG 0.487707 7.2:+8173156 None:intergenic
CACTCCAAGTATATTCAATT+GGG 0.492084 7.2:+8172869 None:intergenic
CGTGTTAGCTATACAAAAGA+TGG 0.492384 7.2:-8173234 MS.gene050307:CDS
GAATAGGTCTTACGCTGCAC+AGG 0.493022 7.2:+8173285 None:intergenic
CAAGTCAAGACACTGCTTAG+TGG 0.500747 7.2:+8172516 None:intergenic
TAAGCCACACAGGTTGCCTA+GGG 0.505306 7.2:-8172900 MS.gene050307:CDS
TGTGATCAGATCACTAGTAA+AGG 0.505810 7.2:+8173155 None:intergenic
CTATAAACGTATGTTATCAT+GGG 0.510040 7.2:-8173023 MS.gene050307:CDS
TTAAGCCACACAGGTTGCCT+AGG 0.512634 7.2:-8172901 MS.gene050307:CDS
CTTCAGCTGTTTGCAAGAGA+TGG 0.513153 7.2:-8173398 MS.gene050307:CDS
CACTAAGCAGTGTCTTGACT+TGG 0.516461 7.2:-8172515 MS.gene050307:CDS
TAAGAGTTCCACAGGGAGAT+CGG 0.527538 7.2:+8173464 None:intergenic
TGTTTGCAAGAGATGGTGTT+CGG 0.538924 7.2:-8173391 MS.gene050307:CDS
AAGTCAAGACACTGCTTAGT+GGG 0.540315 7.2:+8172517 None:intergenic
GTTGAGTTGCCGGAGTTGGA+TGG 0.545335 7.2:-8173261 MS.gene050307:CDS
TGCAACGCTTTCCATAGAAA+CGG 0.557633 7.2:+8172572 None:intergenic
TCATCAATCGCACGATGTCG+GGG 0.560745 7.2:-8173911 None:intergenic
CACCAAAAGACTTTGCTGGA+TGG 0.563357 7.2:-8172456 MS.gene050307:CDS
GACACTAATGGAATGGAAAG+AGG 0.564517 7.2:-8172698 MS.gene050307:CDS
TCTACTAGGCATTTGGGCGG+AGG 0.571620 7.2:+8172835 None:intergenic
CAATAGAAGAGCTGCTGCTG+AGG 0.574535 7.2:-8173520 MS.gene050307:CDS
TAGATCTGACACTAATGGAA+TGG 0.579771 7.2:-8172705 MS.gene050307:CDS
CGATGTCGGGGAATAGAAGA+AGG 0.579884 7.2:-8173899 MS.gene050307:CDS
ATCCAACTCCGGCAACTCAA+CGG 0.581410 7.2:+8173263 None:intergenic
TTAGCTATACAAAAGATGGT+TGG 0.586579 7.2:-8173230 MS.gene050307:CDS
TCTGGGAAATACATAAGCCA+AGG 0.590834 7.2:+8173336 None:intergenic
ATAACACAGTCAGTTGATGT+TGG 0.598284 7.2:+8173084 None:intergenic
CAATTGGGTCAAACACCCCT+AGG 0.600359 7.2:+8172884 None:intergenic
GTCGACTACACGTACAGAAG+TGG 0.602304 7.2:+8173365 None:intergenic
CTTGTCTCGTTTGGATGTTG+GGG 0.612760 7.2:-8173433 MS.gene050307:CDS
GGTTATTGCTAAACCAGTGG+CGG 0.617651 7.2:-8173209 MS.gene050307:CDS
ACACGACATCCATCCAACTC+CGG 0.622138 7.2:+8173252 None:intergenic
ACAATTTGGAGCTGCAAACG+TGG 0.624516 7.2:-8173488 MS.gene050307:CDS
GTTGGTTATTGCTAAACCAG+TGG 0.638727 7.2:-8173212 MS.gene050307:CDS
TATAAACGTATGTTATCATG+GGG 0.645070 7.2:-8173022 MS.gene050307:CDS
TTTGTAATTCATATATGTTG+TGG 0.647853 7.2:-8172751 MS.gene050307:CDS
AATAGGTCTTACGCTGCACA+GGG 0.650966 7.2:+8173286 None:intergenic
TGTTTATCGTAACAACAGCT+CGG 0.669627 7.2:-8172983 MS.gene050307:CDS
CTCTCTACTAGGCATTTGGG+CGG 0.676938 7.2:+8172832 None:intergenic
AATTCATATATGTTGTGGTG+AGG 0.682117 7.2:-8172746 MS.gene050307:CDS
AACGTGGTCCGATCTCCCTG+TGG 0.695767 7.2:-8173472 MS.gene050307:CDS
GCTGTTGTTACGATAAACAG+TGG 0.718462 7.2:+8172987 None:intergenic
GTGTAGTCGACCAATCACCT+TGG 0.730923 7.2:-8173353 MS.gene050307:CDS
AAGCCACACAGGTTGCCTAG+GGG 0.732552 7.2:-8172899 MS.gene050307:CDS
ACACCCCTAGGCAACCTGTG+TGG 0.745993 7.2:+8172896 None:intergenic
ACAATTCTAAGAGTTCCACA+GGG 0.769621 7.2:+8173457 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAGAAAAATATTGTTTA+TGG + chr7.2:8173168-8173187 None:intergenic 15.0%
!! AAGAGAAAAATATTGTTTAT+GGG + chr7.2:8173167-8173186 None:intergenic 15.0%
!!! TGTGTTATAGTATTAATTTT+TGG - chr7.2:8173278-8173297 MS.gene050307:CDS 15.0%
!! TATAATATTTCAATGCTCAA+CGG + chr7.2:8172570-8172589 None:intergenic 20.0%
!! TTTGTAATTCATATATGTTG+TGG - chr7.2:8173596-8173615 MS.gene050307:intron 20.0%
!!! GAAATATTATATTTGGCTTA+GGG - chr7.2:8172579-8172598 MS.gene050307:CDS 20.0%
!!! GAGCATTGAAATATTATATT+TGG - chr7.2:8172572-8172591 MS.gene050307:CDS 20.0%
!!! TGAAATATTATATTTGGCTT+AGG - chr7.2:8172578-8172597 MS.gene050307:CDS 20.0%
! ACTATAAACGTATGTTATCA+TGG - chr7.2:8173323-8173342 MS.gene050307:CDS 25.0%
! CTATAAACGTATGTTATCAT+GGG - chr7.2:8173324-8173343 MS.gene050307:CDS 25.0%
! TATAAACGTATGTTATCATG+GGG - chr7.2:8173325-8173344 MS.gene050307:CDS 25.0%
!! AGATCTAGCTTGAAAATTAT+TGG + chr7.2:8173629-8173648 None:intergenic 25.0%
!! CAAAACAATTACTGTTTTCT+GGG + chr7.2:8173031-8173050 None:intergenic 25.0%
!! GATCTAGCTTGAAAATTATT+GGG + chr7.2:8173628-8173647 None:intergenic 25.0%
!! TCAAAACAATTACTGTTTTC+TGG + chr7.2:8173032-8173051 None:intergenic 25.0%
!!! AGTTTTATGATAGAGTACAA+AGG - chr7.2:8173566-8173585 MS.gene050307:intron 25.0%
!!! GTATTAATTTTTGGACATCT+TGG - chr7.2:8173287-8173306 MS.gene050307:CDS 25.0%
AACAAACGAATTTAGTTAGC+AGG + chr7.2:8172742-8172761 None:intergenic 30.0%
AATTCATATATGTTGTGGTG+AGG - chr7.2:8173601-8173620 MS.gene050307:intron 30.0%
ACACTCCAAGTATATTCAAT+TGG + chr7.2:8173482-8173501 None:intergenic 30.0%
CACTCCAAGTATATTCAATT+GGG + chr7.2:8173481-8173500 None:intergenic 30.0%
CTCTATCATAAAACTCTCTT+TGG + chr7.2:8173561-8173580 None:intergenic 30.0%
TGAGGTAAAAAGTGACAATT+TGG - chr7.2:8172845-8172864 MS.gene050307:CDS 30.0%
TTAGCTATACAAAAGATGGT+TGG - chr7.2:8173117-8173136 MS.gene050307:CDS 30.0%
TTGACCCAATTGAATATACT+TGG - chr7.2:8173474-8173493 MS.gene050307:CDS 30.0%
! CAATTTGGAATTTCCCTTTA+AGG + chr7.2:8173226-8173245 None:intergenic 30.0%
! GATAAGCTTGTCTTTTCTAA+TGG - chr7.2:8173410-8173429 MS.gene050307:CDS 30.0%
! TTTTATTGTTTAAGCCACAC+AGG - chr7.2:8173437-8173456 MS.gene050307:CDS 30.0%
!!! GTTTTTTGTCATCTCATTCT+AGG - chr7.2:8173705-8173724 MS.gene050307:intron 30.0%
AATACATAAGCCAAGGTGAT+TGG + chr7.2:8173007-8173026 None:intergenic 35.0%
AGAATTGTTCTTGTCTCGTT+TGG - chr7.2:8172905-8172924 MS.gene050307:CDS 35.0%
CGTGTTAGCTATACAAAAGA+TGG - chr7.2:8173113-8173132 MS.gene050307:CDS 35.0%
GAGTTCTATTGCGAAAAACT+CGG - chr7.2:8173535-8173554 MS.gene050307:intron 35.0%
GCTTAGTGGGATAATATCTA+TGG + chr7.2:8173820-8173839 None:intergenic 35.0%
GTGATCAGATCACTAGTAAA+GGG + chr7.2:8173194-8173213 None:intergenic 35.0%
TAGATCTGACACTAATGGAA+TGG - chr7.2:8173642-8173661 MS.gene050307:intron 35.0%
TATCGAGGGAAAAAACATTG+AGG + chr7.2:8172534-8172553 None:intergenic 35.0%
TGTGATCAGATCACTAGTAA+AGG + chr7.2:8173195-8173214 None:intergenic 35.0%
TGTTTATCGTAACAACAGCT+CGG - chr7.2:8173364-8173383 MS.gene050307:CDS 35.0%
! AACAATTCTAAGAGTTCCAC+AGG + chr7.2:8172894-8172913 None:intergenic 35.0%
! ACAATTCTAAGAGTTCCACA+GGG + chr7.2:8172893-8172912 None:intergenic 35.0%
! ATAACACAGTCAGTTGATGT+TGG + chr7.2:8173266-8173285 None:intergenic 35.0%
! TTCCATAGAAACGGACTTTA+GGG + chr7.2:8173769-8173788 None:intergenic 35.0%
! TTTCCATAGAAACGGACTTT+AGG + chr7.2:8173770-8173789 None:intergenic 35.0%
!! CAGATGCTTTTGAGAACTTA+TGG - chr7.2:8173861-8173880 MS.gene050307:intron 35.0%
!! CATAAGTTCTCAAAAGCATC+TGG + chr7.2:8173863-8173882 None:intergenic 35.0%
AAAGAGGTGAGAACACTAGA+TGG - chr7.2:8173665-8173684 MS.gene050307:intron 40.0%
AAGTCAAGACACTGCTTAGT+GGG + chr7.2:8173833-8173852 None:intergenic 40.0%
AGAACTCTCTACTAGGCATT+TGG + chr7.2:8173522-8173541 None:intergenic 40.0%
ATCACACTTCCAAGCCTTAA+AGG - chr7.2:8173209-8173228 MS.gene050307:CDS 40.0%
CAAGCTAGATCTGACACTAA+TGG - chr7.2:8173637-8173656 MS.gene050307:intron 40.0%
CACAAGAAAAGGCAGCAATT+TGG + chr7.2:8173241-8173260 None:intergenic 40.0%
GAACTCTCTACTAGGCATTT+GGG + chr7.2:8173521-8173540 None:intergenic 40.0%
GACACTAATGGAATGGAAAG+AGG - chr7.2:8173649-8173668 MS.gene050307:intron 40.0%
GATGATTACTGCTGCATGTA+TGG - chr7.2:8172632-8172651 MS.gene050307:CDS 40.0%
GCTGTTGTTACGATAAACAG+TGG + chr7.2:8173363-8173382 None:intergenic 40.0%
GTTATCATGGGGCAAAAGAA+TGG - chr7.2:8173336-8173355 MS.gene050307:CDS 40.0%
GTTCAAGTACTCGATATCGA+GGG + chr7.2:8172548-8172567 None:intergenic 40.0%
GTTGGTTATTGCTAAACCAG+TGG - chr7.2:8173135-8173154 MS.gene050307:CDS 40.0%
TCACACTTCCAAGCCTTAAA+GGG - chr7.2:8173210-8173229 MS.gene050307:CDS 40.0%
TCGCAATAGAACTCTCTACT+AGG + chr7.2:8173529-8173548 None:intergenic 40.0%
TCTGGGAAATACATAAGCCA+AGG + chr7.2:8173014-8173033 None:intergenic 40.0%
TCTTGTCTCGTTTGGATGTT+GGG - chr7.2:8172913-8172932 MS.gene050307:CDS 40.0%
TGATGTTGGAGCACAAGAAA+AGG + chr7.2:8173252-8173271 None:intergenic 40.0%
TGCAACGCTTTCCATAGAAA+CGG + chr7.2:8173778-8173797 None:intergenic 40.0%
TGTTTGCAAGAGATGGTGTT+CGG - chr7.2:8172956-8172975 MS.gene050307:CDS 40.0%
TTCCCTAAAGTCCGTTTCTA+TGG - chr7.2:8173764-8173783 MS.gene050307:intron 40.0%
TTCTTGTCTCGTTTGGATGT+TGG - chr7.2:8172912-8172931 MS.gene050307:CDS 40.0%
! ATCCATCCAGCAAAGTCTTT+TGG + chr7.2:8173896-8173915 None:intergenic 40.0%
! CATTCTAGGTCTTATGTCAC+TGG - chr7.2:8173719-8173738 MS.gene050307:intron 40.0%
!! TGGAATTTCCCTTTAAGGCT+TGG + chr7.2:8173221-8173240 None:intergenic 40.0%
AATAGGTCTTACGCTGCACA+GGG + chr7.2:8173064-8173083 None:intergenic 45.0%
CAAGTCAAGACACTGCTTAG+TGG + chr7.2:8173834-8173853 None:intergenic 45.0%
CACCAAAAGACTTTGCTGGA+TGG - chr7.2:8173891-8173910 MS.gene050307:CDS 45.0%
CACTAAGCAGTGTCTTGACT+TGG - chr7.2:8173832-8173851 MS.gene050307:intron 45.0%
CTTCAGCTGTTTGCAAGAGA+TGG - chr7.2:8172949-8172968 MS.gene050307:CDS 45.0%
CTTGTCTCGTTTGGATGTTG+GGG - chr7.2:8172914-8172933 MS.gene050307:CDS 45.0%
GAACCACCAAAAGACTTTGC+TGG - chr7.2:8173887-8173906 MS.gene050307:CDS 45.0%
GGTTATTGCTAAACCAGTGG+CGG - chr7.2:8173138-8173157 MS.gene050307:CDS 45.0%
GGTTCAAGTACTCGATATCG+AGG + chr7.2:8172549-8172568 None:intergenic 45.0%
TAAGAGTTCCACAGGGAGAT+CGG + chr7.2:8172886-8172905 None:intergenic 45.0%
! ACAATTTGGAGCTGCAAACG+TGG - chr7.2:8172859-8172878 MS.gene050307:CDS 45.0%
! CATCCAGCAAAGTCTTTTGG+TGG + chr7.2:8173893-8173912 None:intergenic 45.0%
!! TTGAATTATAATTATAATTT+AGG + chr7.2:8172504-8172523 None:intergenic 5.0%
ACACGACATCCATCCAACTC+CGG + chr7.2:8173098-8173117 None:intergenic 50.0%
ATCCAACTCCGGCAACTCAA+CGG + chr7.2:8173087-8173106 None:intergenic 50.0%
CAATAGAAGAGCTGCTGCTG+AGG - chr7.2:8172827-8172846 MS.gene050307:CDS 50.0%
CAATTGGGTCAAACACCCCT+AGG + chr7.2:8173466-8173485 None:intergenic 50.0%
CTCTCTACTAGGCATTTGGG+CGG + chr7.2:8173518-8173537 None:intergenic 50.0%
GAATAGGTCTTACGCTGCAC+AGG + chr7.2:8173065-8173084 None:intergenic 50.0%
GTCGACTACACGTACAGAAG+TGG + chr7.2:8172985-8173004 None:intergenic 50.0%
GTGTAGTCGACCAATCACCT+TGG - chr7.2:8172994-8173013 MS.gene050307:CDS 50.0%
TAAGCCACACAGGTTGCCTA+GGG - chr7.2:8173447-8173466 MS.gene050307:CDS 50.0%
TTAAGCCACACAGGTTGCCT+AGG - chr7.2:8173446-8173465 MS.gene050307:CDS 50.0%
! GACCTATTCCGTTGAGTTGC+CGG - chr7.2:8173076-8173095 MS.gene050307:CDS 50.0%
AAGCCACACAGGTTGCCTAG+GGG - chr7.2:8173448-8173467 MS.gene050307:CDS 55.0%
CTCCGGCAACTCAACGGAAT+AGG + chr7.2:8173081-8173100 None:intergenic 55.0%
TCTACTAGGCATTTGGGCGG+AGG + chr7.2:8173515-8173534 None:intergenic 55.0%
! GTTGAGTTGCCGGAGTTGGA+TGG - chr7.2:8173086-8173105 MS.gene050307:CDS 55.0%
! TTCCGTTGAGTTGCCGGAGT+TGG - chr7.2:8173082-8173101 MS.gene050307:CDS 55.0%
AACGTGGTCCGATCTCCCTG+TGG - chr7.2:8172875-8172894 MS.gene050307:CDS 60.0%
ACACCCCTAGGCAACCTGTG+TGG + chr7.2:8173454-8173473 None:intergenic 60.0%
! TGTTTATGGGCTGCCGCCAC+TGG + chr7.2:8173154-8173173 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 8172450 8173919 8172450 ID=MS.gene050307
chr7.2 mRNA 8172450 8173919 8172450 ID=MS.gene050307.t1;Parent=MS.gene050307
chr7.2 exon 8173885 8173919 8173885 ID=MS.gene050307.t1.exon1;Parent=MS.gene050307.t1
chr7.2 CDS 8173885 8173919 8173885 ID=cds.MS.gene050307.t1;Parent=MS.gene050307.t1
chr7.2 exon 8172450 8173551 8172450 ID=MS.gene050307.t1.exon2;Parent=MS.gene050307.t1
chr7.2 CDS 8172450 8173551 8172450 ID=cds.MS.gene050307.t1;Parent=MS.gene050307.t1
Gene Sequence

>MS.gene050307

ATGTCGGGGAATAGAAGAAGGACGTCGAAATCATCGTAAGTTCTCTTCATTCCTAAATTATAATTATAATTCAACTTTCTACCTCAATGTTTTTTCCCTCGATATCGAGTACTTGAACCGTTGAGCATTGAAATATTATATTTGGCTTAGGGTTTGTACTAATGTTGTGCTTACTTTTAATTGATGATTACTGCTGCATGTATGGTTTTTATCTCTAATTGCATGAAACATTCATGTTTGTTGTGATGAATTTTTATTCTTGTTAAGAAGTTCTGAATATTTTAATCTTCCTGCTAACTAAATTCGTTTGTTAAATTTTACAACTTTAATCTTTCACATGCATATCTAATACTTATTTTATCAAGTAGAATCAAAGACAATAGAAGAGCTGCTGCTGAGGTAAAAAGTGACAATTTGGAGCTGCAAACGTGGTCCGATCTCCCTGTGGAACTCTTAGAATTGTTCTTGTCTCGTTTGGATGTTGGGGATAATATTCGTGCTTCAGCTGTTTGCAAGAGATGGTGTTCGGTTGCCACTTCTGTACGTGTAGTCGACCAATCACCTTGGCTTATGTATTTCCCAGAAAACAGTAATTGTTTTGATTTCTATGACCCTGTGCAGCGTAAGACCTATTCCGTTGAGTTGCCGGAGTTGGATGGATGTCGTGTTAGCTATACAAAAGATGGTTGGTTATTGCTAAACCAGTGGCGGCAGCCCATAAACAATATTTTTCTCTTTAATCCCTTTACTAGTGATCTGATCACACTTCCAAGCCTTAAAGGGAAATTCCAAATTGCTGCCTTTTCTTGTGCTCCAACATCAACTGACTGTGTTATAGTATTAATTTTTGGACATCTTGGTTCTAGTGTTCTAACTATAAACGTATGTTATCATGGGGCAAAAGAATGGACCACTGTTTATCGTAACAACAGCTCGGTATTTTTTTCTAGCATTTGTGATGATAAGCTTGTCTTTTCTAATGGATTATTTTATTGTTTAAGCCACACAGGTTGCCTAGGGGTGTTTGACCCAATTGAATATACTTGGAGTGTTCTCGTTGTACCTCCGCCCAAATGCCTAGTAGAGAGTTCTATTGCGAAAAACTCGGCCAAAGAGAGTTTTATGATAGAGTACAAAGGAAATATATTTGTAATTCATATATGTTGTGGTGAGGACCCAATAATTTTCAAGCTAGATCTGACACTAATGGAATGGAAAGAGGTGAGAACACTAGATGGAGTGACACTTTTTGCTAGTTTTTTGTCATCTCATTCTAGGTCTTATGTCACTGGAATTATGAGAAACAGTGTCTACTTCCCTAAAGTCCGTTTCTATGGAAAGCGTTGCATATCATTCTCTCTCGATGACCATAGATATTATCCCACTAAGCAGTGTCTTGACTTGGTAGAACCAGATGCTTTTGAGAACTTATGGATTGAACCACCAAAAGACTTTGCTGGATGGATGTAA
Protein sequence

>MS.gene050307.t1

MSGNRRRTSKSSIKDNRRAAAEVKSDNLELQTWSDLPVELLELFLSRLDVGDNIRASAVCKRWCSVATSVRVVDQSPWLMYFPENSNCFDFYDPVQRKTYSVELPELDGCRVSYTKDGWLLLNQWRQPINNIFLFNPFTSDLITLPSLKGKFQIAAFSCAPTSTDCVIVLIFGHLGSSVLTINVCYHGAKEWTTVYRNNSSVFFSSICDDKLVFSNGLFYCLSHTGCLGVFDPIEYTWSVLVVPPPKCLVESSIAKNSAKESFMIEYKGNIFVIHICCGEDPIIFKLDLTLMEWKEVRTLDGVTLFASFLSSHSRSYVTGIMRNSVYFPKVRFYGKRCISFSLDDHRYYPTKQCLDLVEPDAFENLWIEPPKDFAGWM