Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050308.t1 | XP_004494192.1 | 59.8 | 361 | 94 | 1 | 6 | 315 | 14 | 374 | 3.50E-120 | 441.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050308.t1 | Q9FVS1 | 36.5 | 340 | 156 | 5 | 29 | 313 | 13 | 347 | 1.2e-52 | 208.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050308.t1 | A0A1S2XV83 | 59.8 | 361 | 94 | 1 | 6 | 315 | 14 | 374 | 2.5e-120 | 441.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene050308 | MS.gene75065 | PPI |
| MS.gene050308 | MS.gene59977 | PPI |
| MS.gene050308 | MS.gene012753 | PPI |
| MS.gene050308 | MS.gene05311 | PPI |
| MS.gene050308 | MS.gene98673 | PPI |
| MS.gene050308 | MS.gene024341 | PPI |
| MS.gene050308 | MS.gene43440 | PPI |
| MS.gene050308 | MS.gene75067 | PPI |
| MS.gene050308 | MS.gene47120 | PPI |
| MS.gene050308 | MS.gene42887 | PPI |
| MS.gene050308 | MS.gene42893 | PPI |
| MS.gene050308 | MS.gene67877 | PPI |
| MS.gene050308 | MS.gene071039 | PPI |
| MS.gene050308 | MS.gene42891 | PPI |
| MS.gene050308 | MS.gene03004 | PPI |
| MS.gene050308 | MS.gene071037 | PPI |
| MS.gene050308 | MS.gene024275 | PPI |
| MS.gene050308 | MS.gene33922 | PPI |
| MS.gene050308 | MS.gene024343 | PPI |
| MS.gene050308 | MS.gene98670 | PPI |
| MS.gene050308 | MS.gene98671 | PPI |
| MS.gene050308 | MS.gene064044 | PPI |
| MS.gene050308 | MS.gene42889 | PPI |
| MS.gene050308 | MS.gene009311 | PPI |
| MS.gene050308 | MS.gene005636 | PPI |
| MS.gene050308 | MS.gene52540 | PPI |
| MS.gene050308 | MS.gene53925 | PPI |
| MS.gene050308 | MS.gene95088 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050308.t1 | MTR_7g104790 | 55.738 | 366 | 100 | 5 | 11 | 318 | 40 | 401 | 1.38e-137 | 395 |
| MS.gene050308.t1 | MTR_7g104790 | 55.738 | 366 | 100 | 5 | 11 | 318 | 16 | 377 | 3.97e-137 | 394 |
| MS.gene050308.t1 | MTR_1g059840 | 55.647 | 363 | 110 | 1 | 5 | 316 | 12 | 374 | 6.41e-137 | 393 |
| MS.gene050308.t1 | MTR_7g104785 | 54.775 | 356 | 106 | 6 | 11 | 315 | 17 | 368 | 8.15e-125 | 362 |
| MS.gene050308.t1 | MTR_7g104760 | 59.459 | 148 | 36 | 4 | 153 | 296 | 12 | 139 | 9.05e-52 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050308.t1 | AT1G57790 | 36.176 | 340 | 157 | 6 | 29 | 313 | 13 | 347 | 5.86e-62 | 201 |
| MS.gene050308.t1 | AT4G00893 | 32.070 | 343 | 172 | 7 | 28 | 313 | 44 | 382 | 5.74e-51 | 173 |
| MS.gene050308.t1 | AT3G56470 | 33.529 | 340 | 159 | 5 | 27 | 311 | 27 | 354 | 4.10e-49 | 168 |
| MS.gene050308.t1 | AT4G12370 | 29.412 | 306 | 147 | 9 | 76 | 318 | 1 | 300 | 3.26e-32 | 122 |
| MS.gene050308.t1 | AT4G10660 | 28.136 | 295 | 150 | 6 | 57 | 293 | 3 | 293 | 1.62e-29 | 115 |
| MS.gene050308.t1 | AT3G18720 | 30.392 | 306 | 143 | 12 | 31 | 271 | 51 | 351 | 3.33e-26 | 107 |
| MS.gene050308.t1 | AT1G49360 | 27.077 | 325 | 158 | 12 | 9 | 268 | 90 | 400 | 1.50e-23 | 100 |
| MS.gene050308.t1 | AT1G49360 | 27.077 | 325 | 158 | 12 | 9 | 268 | 67 | 377 | 1.74e-23 | 100 |
| MS.gene050308.t1 | AT1G49360 | 27.815 | 302 | 141 | 11 | 32 | 268 | 8 | 297 | 7.13e-23 | 97.8 |
| MS.gene050308.t1 | AT1G49360 | 27.815 | 302 | 141 | 11 | 32 | 268 | 8 | 297 | 7.13e-23 | 97.8 |
| MS.gene050308.t1 | AT1G49360 | 27.815 | 302 | 141 | 11 | 32 | 268 | 8 | 297 | 7.13e-23 | 97.8 |
| MS.gene050308.t1 | AT4G10700 | 25.704 | 284 | 134 | 7 | 57 | 311 | 3 | 238 | 1.03e-22 | 95.1 |
| MS.gene050308.t1 | AT4G12382 | 44.706 | 85 | 47 | 0 | 28 | 112 | 9 | 93 | 3.62e-18 | 80.1 |
| MS.gene050308.t1 | AT4G12382 | 44.706 | 85 | 47 | 0 | 28 | 112 | 9 | 93 | 3.62e-18 | 80.1 |
| MS.gene050308.t1 | AT2G44735 | 38.971 | 136 | 71 | 6 | 86 | 214 | 117 | 247 | 6.28e-15 | 75.1 |
| MS.gene050308.t1 | AT4G10695 | 27.717 | 184 | 82 | 3 | 48 | 180 | 8 | 191 | 8.45e-15 | 73.2 |
| MS.gene050308.t1 | AT4G10695 | 27.717 | 184 | 82 | 3 | 48 | 180 | 8 | 191 | 8.45e-15 | 73.2 |
Find 65 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATATAACTTGAAAATAAT+TGG | 0.138028 | 7.2:+8179535 | None:intergenic |
| ACACTCCAAGTATATTTAAC+AGG | 0.306200 | 7.2:+8179679 | None:intergenic |
| CTGGGAATCCGGGTGGAATA+AGG | 0.317861 | 7.2:+8179650 | None:intergenic |
| ATCCAGCCAGCAAAGTCTTT+TGG | 0.327295 | 7.2:+8179268 | None:intergenic |
| CCAGTCATGACACTGCAAAC+TGG | 0.362616 | 7.2:+8179330 | None:intergenic |
| AAGAAAACACTCTGGGAATC+CGG | 0.374097 | 7.2:+8179639 | None:intergenic |
| TTCCGCAGGGAGATCGGCCC+AGG | 0.375819 | 7.2:+8180280 | None:intergenic |
| ACTTTGGAAACTCAATGAAA+TGG | 0.377973 | 7.2:+8180078 | None:intergenic |
| TTTCATTGAGTTTCCAAAGT+TGG | 0.386320 | 7.2:-8180075 | MS.gene050308:CDS |
| TTCACCCTGTTAAATATACT+TGG | 0.404539 | 7.2:-8179684 | MS.gene050308:CDS |
| TTCTCTAAAGTCCGTTTACA+TGG | 0.404588 | 7.2:-8179397 | MS.gene050308:CDS |
| GCAAACTGGGATAATATCTA+TGG | 0.411753 | 7.2:+8179344 | None:intergenic |
| AATCCTAGTCCATCTGTTCC+AGG | 0.423678 | 7.2:+8179762 | None:intergenic |
| TCTATTAACACATGTTCTCC+TGG | 0.424755 | 7.2:-8179832 | MS.gene050308:CDS |
| GTTCATTACACGTACAGAAC+TGG | 0.429904 | 7.2:+8180175 | None:intergenic |
| GAATCACCAAAAGACTTTGC+TGG | 0.432247 | 7.2:-8179274 | MS.gene050308:CDS |
| TTGTTCAAAATTGGTGGAAA+GGG | 0.436757 | 7.2:-8179618 | MS.gene050308:CDS |
| CTTTGGAAACTCAATGAAAT+GGG | 0.442916 | 7.2:+8180079 | None:intergenic |
| GTTCTCCTGGGGCAAACAAA+TGG | 0.445155 | 7.2:-8179819 | MS.gene050308:CDS |
| CTTGTTCAAAATTGGTGGAA+AGG | 0.447787 | 7.2:-8179619 | MS.gene050308:CDS |
| CACCAAAAGACTTTGCTGGC+TGG | 0.454616 | 7.2:-8179270 | MS.gene050308:CDS |
| AAAGAAGTGACAACGTTAGA+TGG | 0.458972 | 7.2:-8179496 | MS.gene050308:CDS |
| GTGTCATGACTGGGTAGAAC+TGG | 0.459760 | 7.2:-8179320 | MS.gene050308:CDS |
| CTAAGCGACAAAGGGTTGCT+AGG | 0.460800 | 7.2:-8179712 | MS.gene050308:CDS |
| GATATAACTTGAAAATAATT+GGG | 0.461365 | 7.2:+8179536 | None:intergenic |
| ATCAATTCTAAGAGTTCCGC+AGG | 0.465986 | 7.2:+8180266 | None:intergenic |
| CCAGTTTGCAGTGTCATGAC+TGG | 0.467419 | 7.2:-8179330 | MS.gene050308:CDS |
| ACAATCTGGAGTTGCAAACC+TGG | 0.473315 | 7.2:-8180298 | MS.gene050308:CDS |
| AATACATAAGCCAAGGTGAT+TGG | 0.474123 | 7.2:+8180153 | None:intergenic |
| TGCAACGCTTTCCATGTAAA+CGG | 0.475584 | 7.2:+8179386 | None:intergenic |
| CATGTTAGCTATACAAAAGA+TGG | 0.479940 | 7.2:-8180044 | MS.gene050308:intron |
| ACATGACATCCATCCAACTT+TGG | 0.481949 | 7.2:+8180062 | None:intergenic |
| TGAGGTGAAAGCTGACAATC+TGG | 0.486792 | 7.2:-8180312 | MS.gene050308:CDS |
| GTTGTCCATTTGTTTGCCCC+AGG | 0.492308 | 7.2:+8179814 | None:intergenic |
| CAGTCATGACACTGCAAACT+GGG | 0.505866 | 7.2:+8179331 | None:intergenic |
| TAAGCGACAAAGGGTTGCTA+GGG | 0.509850 | 7.2:-8179711 | MS.gene050308:CDS |
| CTATTAACACATGTTCTCCT+GGG | 0.510690 | 7.2:-8179831 | MS.gene050308:CDS |
| CTTCAGCTGTTTGCAAGAGA+TGG | 0.513153 | 7.2:-8180208 | MS.gene050308:CDS |
| ATTGAGTTTCCAAAGTTGGA+TGG | 0.513372 | 7.2:-8180071 | MS.gene050308:CDS |
| TTTACTGTCTAAGCGACAAA+GGG | 0.514716 | 7.2:-8179720 | MS.gene050308:CDS |
| TTTCCTGGAACAGATGGACT+AGG | 0.522998 | 7.2:-8179765 | MS.gene050308:CDS |
| TACATTCTACGACCCTGTAC+AGG | 0.525822 | 7.2:-8180108 | MS.gene050308:CDS |
| TAAGAGTTCCGCAGGGAGAT+CGG | 0.526488 | 7.2:+8180274 | None:intergenic |
| AGAAAACACTCTGGGAATCC+GGG | 0.529020 | 7.2:+8179640 | None:intergenic |
| TTTGGGAAATACATAAGCCA+AGG | 0.561817 | 7.2:+8180146 | None:intergenic |
| TTTGAACAAGAAAACACTCT+GGG | 0.570873 | 7.2:+8179632 | None:intergenic |
| CAGTTTGCAGTGTCATGACT+GGG | 0.573518 | 7.2:-8179329 | MS.gene050308:CDS |
| CAAGTTATATCTGACAACAA+TGG | 0.591633 | 7.2:-8179524 | MS.gene050308:CDS |
| TTATTATTCAGGGTAAGTGA+CGG | 0.601111 | 7.2:-8180362 | MS.gene050308:intron |
| CAATCTGGAGTTGCAAACCT+GGG | 0.603358 | 7.2:-8180297 | MS.gene050308:CDS |
| GTTCTGAACCTTATTCCACC+CGG | 0.608100 | 7.2:-8179658 | MS.gene050308:CDS |
| CATTCTAAGACTTACGTCAG+TGG | 0.613938 | 7.2:-8179442 | MS.gene050308:CDS |
| TATATCTGACAACAATGGAG+TGG | 0.623598 | 7.2:-8179519 | MS.gene050308:CDS |
| CACTCCAAGTATATTTAACA+GGG | 0.623964 | 7.2:+8179680 | None:intergenic |
| AGTGACGGAATCAATGACAA+TGG | 0.627376 | 7.2:-8180347 | MS.gene050308:CDS |
| CAATGGAAGAGTGGCTGCTG+AGG | 0.630397 | 7.2:-8180330 | MS.gene050308:CDS |
| AATCAATGACAATGGAAGAG+TGG | 0.649228 | 7.2:-8180339 | MS.gene050308:CDS |
| GTGTTAATAGATACAACTGT+AGG | 0.657076 | 7.2:+8179844 | None:intergenic |
| AAATTTATGATAGAGCATGA+AGG | 0.660813 | 7.2:-8179595 | MS.gene050308:CDS |
| TATTAACACATGTTCTCCTG+GGG | 0.662817 | 7.2:-8179830 | MS.gene050308:CDS |
| AACCTGGGCCGATCTCCCTG+CGG | 0.663179 | 7.2:-8180282 | MS.gene050308:CDS |
| GTGTAATGAACCAATCACCT+TGG | 0.677032 | 7.2:-8180163 | MS.gene050308:CDS |
| AAGCGACAAAGGGTTGCTAG+GGG | 0.693095 | 7.2:-8179710 | MS.gene050308:CDS |
| AAACACTCTGGGAATCCGGG+TGG | 0.714669 | 7.2:+8179643 | None:intergenic |
| TCAATTCTAAGAGTTCCGCA+GGG | 0.736703 | 7.2:+8180267 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATACTTATTTTATTATTCA+GGG | - | chr7.2:8179339-8179358 | MS.gene050308:CDS | 10.0% |
| !!! | TAATACTTATTTTATTATTC+AGG | - | chr7.2:8179338-8179357 | MS.gene050308:CDS | 10.0% |
| !! | AGATATAACTTGAAAATAAT+TGG | + | chr7.2:8180179-8180198 | None:intergenic | 15.0% |
| !! | GATATAACTTGAAAATAATT+GGG | + | chr7.2:8180178-8180197 | None:intergenic | 15.0% |
| !! | TGGATTAAAGAAAAAAAAAA+CGG | + | chr7.2:8179733-8179752 | None:intergenic | 15.0% |
| !! | GGATTAAAGAAAAAAAAAAC+GGG | + | chr7.2:8179732-8179751 | None:intergenic | 20.0% |
| !! | TTTCTTTAATCCATTTACTA+GGG | - | chr7.2:8179740-8179759 | MS.gene050308:CDS | 20.0% |
| !!! | TTTTCTTTAATCCATTTACT+AGG | - | chr7.2:8179739-8179758 | MS.gene050308:CDS | 20.0% |
| ! | AAATTTATGATAGAGCATGA+AGG | - | chr7.2:8180116-8180135 | MS.gene050308:CDS | 25.0% |
| !! | AAAAAAAAACGGGTGATTTT+CGG | + | chr7.2:8179722-8179741 | None:intergenic | 25.0% |
| !! | AGTGTTTTCTTGTTCAAAAT+TGG | - | chr7.2:8180084-8180103 | MS.gene050308:CDS | 25.0% |
| ACACTCCAAGTATATTTAAC+AGG | + | chr7.2:8180035-8180054 | None:intergenic | 30.0% | |
| CAAGTTATATCTGACAACAA+TGG | - | chr7.2:8180187-8180206 | MS.gene050308:CDS | 30.0% | |
| CACTCCAAGTATATTTAACA+GGG | + | chr7.2:8180034-8180053 | None:intergenic | 30.0% | |
| CATGTTAGCTATACAAAAGA+TGG | - | chr7.2:8179667-8179686 | MS.gene050308:CDS | 30.0% | |
| CTTATGTATTTCCCAAAAAG+CGG | - | chr7.2:8179571-8179590 | MS.gene050308:CDS | 30.0% | |
| GTGTTAATAGATACAACTGT+AGG | + | chr7.2:8179870-8179889 | None:intergenic | 30.0% | |
| TTAGCTATACAAAAGATGGT+TGG | - | chr7.2:8179671-8179690 | MS.gene050308:CDS | 30.0% | |
| TTATTATTCAGGGTAAGTGA+CGG | - | chr7.2:8179349-8179368 | MS.gene050308:CDS | 30.0% | |
| TTCACCCTGTTAAATATACT+TGG | - | chr7.2:8180027-8180046 | MS.gene050308:intron | 30.0% | |
| TTGTTCAAAATTGGTGGAAA+GGG | - | chr7.2:8180093-8180112 | MS.gene050308:CDS | 30.0% | |
| TTTCATTGAGTTTCCAAAGT+TGG | - | chr7.2:8179636-8179655 | MS.gene050308:CDS | 30.0% | |
| TTTGAACAAGAAAACACTCT+GGG | + | chr7.2:8180082-8180101 | None:intergenic | 30.0% | |
| ! | ACTAGGATTGTCTTTTCTAA+TGG | - | chr7.2:8179963-8179982 | MS.gene050308:intron | 30.0% |
| ! | ACTTTGGAAACTCAATGAAA+TGG | + | chr7.2:8179636-8179655 | None:intergenic | 30.0% |
| ! | ATAACACATTCAGTTGATGT+TGG | + | chr7.2:8179825-8179844 | None:intergenic | 30.0% |
| ! | CTAGGATTGTCTTTTCTAAT+GGG | - | chr7.2:8179964-8179983 | MS.gene050308:intron | 30.0% |
| ! | CTCTTAGAATTGATCTTTTC+TGG | - | chr7.2:8179454-8179473 | MS.gene050308:CDS | 30.0% |
| ! | CTTTGGAAACTCAATGAAAT+GGG | + | chr7.2:8179635-8179654 | None:intergenic | 30.0% |
| ! | GTTTTCTTGTTCAAAATTGG+TGG | - | chr7.2:8180087-8180106 | MS.gene050308:CDS | 30.0% |
| ! | TTTTGAACAAGAAAACACTC+TGG | + | chr7.2:8180083-8180102 | None:intergenic | 30.0% |
| !!! | AAAACTGCTCATTTTTTTCC+TGG | - | chr7.2:8179931-8179950 | MS.gene050308:intron | 30.0% |
| AAAGAAGTGACAACGTTAGA+TGG | - | chr7.2:8180215-8180234 | MS.gene050308:CDS | 35.0% | |
| AATACATAAGCCAAGGTGAT+TGG | + | chr7.2:8179561-8179580 | None:intergenic | 35.0% | |
| AATCAATGACAATGGAAGAG+TGG | - | chr7.2:8179372-8179391 | MS.gene050308:CDS | 35.0% | |
| ATTGAGTTTCCAAAGTTGGA+TGG | - | chr7.2:8179640-8179659 | MS.gene050308:CDS | 35.0% | |
| CTATTAACACATGTTCTCCT+GGG | - | chr7.2:8179880-8179899 | MS.gene050308:intron | 35.0% | |
| CTTGTTCAAAATTGGTGGAA+AGG | - | chr7.2:8180092-8180111 | MS.gene050308:CDS | 35.0% | |
| GCAAACTGGGATAATATCTA+TGG | + | chr7.2:8180370-8180389 | None:intergenic | 35.0% | |
| TATATCTGACAACAATGGAG+TGG | - | chr7.2:8180192-8180211 | MS.gene050308:CDS | 35.0% | |
| TATTAACACATGTTCTCCTG+GGG | - | chr7.2:8179881-8179900 | MS.gene050308:intron | 35.0% | |
| TCTATTAACACATGTTCTCC+TGG | - | chr7.2:8179879-8179898 | MS.gene050308:intron | 35.0% | |
| TTTACTGTCTAAGCGACAAA+GGG | - | chr7.2:8179991-8180010 | MS.gene050308:intron | 35.0% | |
| TTTGGGAAATACATAAGCCA+AGG | + | chr7.2:8179568-8179587 | None:intergenic | 35.0% | |
| ! | ATGGTTGGTTATTGCTATAC+CGG | - | chr7.2:8179686-8179705 | MS.gene050308:CDS | 35.0% |
| ! | TTTTACTGTCTAAGCGACAA+AGG | - | chr7.2:8179990-8180009 | MS.gene050308:intron | 35.0% |
| !! | GGATACTTTTGAGAACATGT+GGG | - | chr7.2:8180412-8180431 | MS.gene050308:intron | 35.0% |
| !! | TGGATACTTTTGAGAACATG+TGG | - | chr7.2:8180411-8180430 | MS.gene050308:intron | 35.0% |
| !! | TTCTCTAAAGTCCGTTTACA+TGG | - | chr7.2:8180314-8180333 | MS.gene050308:CDS | 35.0% |
| !!! | CATTTTTTTCCTGGAACAGA+TGG | - | chr7.2:8179940-8179959 | MS.gene050308:intron | 35.0% |
| ACATGACATCCATCCAACTT+TGG | + | chr7.2:8179652-8179671 | None:intergenic | 40.0% | |
| CATTTACTAGGGAGATGATC+AGG | - | chr7.2:8179751-8179770 | MS.gene050308:CDS | 40.0% | |
| CTGATCATCTCCCTAGTAAA+TGG | + | chr7.2:8179753-8179772 | None:intergenic | 40.0% | |
| GAATCACCAAAAGACTTTGC+TGG | - | chr7.2:8180437-8180456 | MS.gene050308:intron | 40.0% | |
| GCAACTTGCAAGACTGAATT+GGG | + | chr7.2:8179296-8179315 | None:intergenic | 40.0% | |
| GTGTAATGAACCAATCACCT+TGG | - | chr7.2:8179548-8179567 | MS.gene050308:CDS | 40.0% | |
| GTTCATTACACGTACAGAAC+TGG | + | chr7.2:8179539-8179558 | None:intergenic | 40.0% | |
| TGCAACGCTTTCCATGTAAA+CGG | + | chr7.2:8180328-8180347 | None:intergenic | 40.0% | |
| TGCAACTTGCAAGACTGAAT+TGG | + | chr7.2:8179297-8179316 | None:intergenic | 40.0% | |
| TGGTATGTCATGGCAAATCT+AGG | + | chr7.2:8179780-8179799 | None:intergenic | 40.0% | |
| ! | AAATGGGTCTTTTCCTGTAC+AGG | + | chr7.2:8179619-8179638 | None:intergenic | 40.0% |
| ! | AAGAAAACACTCTGGGAATC+CGG | + | chr7.2:8180075-8180094 | None:intergenic | 40.0% |
| ! | AATGGGTCTTTTCCTGTACA+GGG | + | chr7.2:8179618-8179637 | None:intergenic | 40.0% |
| ! | AGTGACGGAATCAATGACAA+TGG | - | chr7.2:8179364-8179383 | MS.gene050308:CDS | 40.0% |
| ! | ATCAATTCTAAGAGTTCCGC+AGG | + | chr7.2:8179448-8179467 | None:intergenic | 40.0% |
| ! | TCAATTCTAAGAGTTCCGCA+GGG | + | chr7.2:8179447-8179466 | None:intergenic | 40.0% |
| !! | CATTCTAAGACTTACGTCAG+TGG | - | chr7.2:8180269-8180288 | MS.gene050308:CDS | 40.0% |
| !!! | TATAGCAGCTACCGCTTTTT+GGG | + | chr7.2:8179585-8179604 | None:intergenic | 40.0% |
| AATCCTAGTCCATCTGTTCC+AGG | + | chr7.2:8179952-8179971 | None:intergenic | 45.0% | |
| CAGTCATGACACTGCAAACT+GGG | + | chr7.2:8180383-8180402 | None:intergenic | 45.0% | |
| CAGTTTGCAGTGTCATGACT+GGG | - | chr7.2:8180382-8180401 | MS.gene050308:intron | 45.0% | |
| CTTCAGCTGTTTGCAAGAGA+TGG | - | chr7.2:8179503-8179522 | MS.gene050308:CDS | 45.0% | |
| TAAGCGACAAAGGGTTGCTA+GGG | - | chr7.2:8180000-8180019 | MS.gene050308:intron | 45.0% | |
| TACATTCTACGACCCTGTAC+AGG | - | chr7.2:8179603-8179622 | MS.gene050308:CDS | 45.0% | |
| TGAGGTGAAAGCTGACAATC+TGG | - | chr7.2:8179399-8179418 | MS.gene050308:CDS | 45.0% | |
| TGATGTTGGAGCACAAGAGA+AGG | + | chr7.2:8179811-8179830 | None:intergenic | 45.0% | |
| ! | ACAATCTGGAGTTGCAAACC+TGG | - | chr7.2:8179413-8179432 | MS.gene050308:CDS | 45.0% |
| ! | AGAAAACACTCTGGGAATCC+GGG | + | chr7.2:8180074-8180093 | None:intergenic | 45.0% |
| ! | ATCCAGCCAGCAAAGTCTTT+TGG | + | chr7.2:8180446-8180465 | None:intergenic | 45.0% |
| ! | CAATCTGGAGTTGCAAACCT+GGG | - | chr7.2:8179414-8179433 | MS.gene050308:CDS | 45.0% |
| ! | GTTCTGAACCTTATTCCACC+CGG | - | chr7.2:8180053-8180072 | MS.gene050308:CDS | 45.0% |
| ! | TTTCCTGGAACAGATGGACT+AGG | - | chr7.2:8179946-8179965 | MS.gene050308:intron | 45.0% |
| !! | GTATAGCAGCTACCGCTTTT+TGG | + | chr7.2:8179586-8179605 | None:intergenic | 45.0% |
| !!! | CTTTTCTGGTTTGATCGCAG+CGG | - | chr7.2:8179468-8179487 | MS.gene050308:CDS | 45.0% |
| AAGCGACAAAGGGTTGCTAG+GGG | - | chr7.2:8180001-8180020 | MS.gene050308:intron | 50.0% | |
| CACAAGAGAAGGCAGCAATG+TGG | + | chr7.2:8179800-8179819 | None:intergenic | 50.0% | |
| CACCAAAAGACTTTGCTGGC+TGG | - | chr7.2:8180441-8180460 | MS.gene050308:intron | 50.0% | |
| CCAGTCATGACACTGCAAAC+TGG | + | chr7.2:8180384-8180403 | None:intergenic | 50.0% | |
| CCAGTTTGCAGTGTCATGAC+TGG | - | chr7.2:8180381-8180400 | MS.gene050308:intron | 50.0% | |
| CTAAGCGACAAAGGGTTGCT+AGG | - | chr7.2:8179999-8180018 | MS.gene050308:intron | 50.0% | |
| GGCAGCAATGTGGTATGTCA+TGG | + | chr7.2:8179790-8179809 | None:intergenic | 50.0% | |
| GTGTCATGACTGGGTAGAAC+TGG | - | chr7.2:8180391-8180410 | MS.gene050308:intron | 50.0% | |
| GTTCTCCTGGGGCAAACAAA+TGG | - | chr7.2:8179892-8179911 | MS.gene050308:intron | 50.0% | |
| GTTGTCCATTTGTTTGCCCC+AGG | + | chr7.2:8179900-8179919 | None:intergenic | 50.0% | |
| TAAGAGTTCCGCAGGGAGAT+CGG | + | chr7.2:8179440-8179459 | None:intergenic | 50.0% | |
| ! | GATTTTCGGCACACTCTGAC+CGG | + | chr7.2:8179708-8179727 | None:intergenic | 50.0% |
| CAATGGAAGAGTGGCTGCTG+AGG | - | chr7.2:8179381-8179400 | MS.gene050308:CDS | 55.0% | |
| CTGGGAATCCGGGTGGAATA+AGG | + | chr7.2:8180064-8180083 | None:intergenic | 55.0% | |
| ! | AAACACTCTGGGAATCCGGG+TGG | + | chr7.2:8180071-8180090 | None:intergenic | 55.0% |
| AACCTGGGCCGATCTCCCTG+CGG | - | chr7.2:8179429-8179448 | MS.gene050308:CDS | 65.0% | |
| TTCCGCAGGGAGATCGGCCC+AGG | + | chr7.2:8179434-8179453 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 8179264 | 8180469 | 8179264 | ID=MS.gene050308 |
| chr7.2 | mRNA | 8179264 | 8180469 | 8179264 | ID=MS.gene050308.t1;Parent=MS.gene050308 |
| chr7.2 | exon | 8180459 | 8180469 | 8180459 | ID=MS.gene050308.t1.exon1;Parent=MS.gene050308.t1 |
| chr7.2 | CDS | 8180459 | 8180469 | 8180459 | ID=cds.MS.gene050308.t1;Parent=MS.gene050308.t1 |
| chr7.2 | exon | 8180045 | 8180373 | 8180045 | ID=MS.gene050308.t1.exon2;Parent=MS.gene050308.t1 |
| chr7.2 | CDS | 8180045 | 8180373 | 8180045 | ID=cds.MS.gene050308.t1;Parent=MS.gene050308.t1 |
| chr7.2 | exon | 8179264 | 8179880 | 8179264 | ID=MS.gene050308.t1.exon3;Parent=MS.gene050308.t1 |
| chr7.2 | CDS | 8179264 | 8179880 | 8179264 | ID=cds.MS.gene050308.t1;Parent=MS.gene050308.t1 |
| Gene Sequence |
| Protein sequence |
