Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050892.t1 | XP_024626885.1 | 92.5 | 642 | 46 | 1 | 1 | 640 | 1 | 642 | 0.00E+00 | 1187.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050892.t1 | A2Q346 | 92.4 | 631 | 46 | 1 | 13 | 641 | 1 | 631 | 0.0e+00 | 1164.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050892 | MS.gene072484 | 0.918177 | 2.15E-86 | -1.69E-46 |
| MS.gene050892 | MS.gene29352 | 0.969443 | 3.95E-130 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene072485 | MS.gene050892 | PPI |
| MS.gene78586 | MS.gene050892 | PPI |
| MS.gene78585 | MS.gene050892 | PPI |
| MS.gene78587 | MS.gene050892 | PPI |
| MS.gene050892 | MS.gene050891 | PPI |
| MS.gene29351 | MS.gene050892 | PPI |
| MS.gene050892 | MS.gene072482 | PPI |
| MS.gene050942 | MS.gene050892 | PPI |
| MS.gene072484 | MS.gene050892 | PPI |
| MS.gene67159 | MS.gene050892 | PPI |
| MS.gene050889 | MS.gene050892 | PPI |
| MS.gene053360 | MS.gene050892 | PPI |
| MS.gene072482 | MS.gene050892 | PPI |
| MS.gene054416 | MS.gene050892 | PPI |
| MS.gene072481 | MS.gene050892 | PPI |
| MS.gene072483 | MS.gene050892 | PPI |
| MS.gene78584 | MS.gene050892 | PPI |
| MS.gene050891 | MS.gene050892 | PPI |
| MS.gene29352 | MS.gene050892 | PPI |
| MS.gene050892 | MS.gene78586 | PPI |
| MS.gene050892 | MS.gene072485 | PPI |
| MS.gene063225 | MS.gene050892 | PPI |
| MS.gene072542 | MS.gene050892 | PPI |
| MS.gene050890 | MS.gene050892 | PPI |
| MS.gene78588 | MS.gene050892 | PPI |
| MS.gene29350 | MS.gene050892 | PPI |
| MS.gene050738 | MS.gene050892 | PPI |
| MS.gene65461 | MS.gene050892 | PPI |
| MS.gene050893 | MS.gene050892 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050892.t1 | MTR_7g113250 | 92.393 | 631 | 46 | 1 | 13 | 641 | 1 | 631 | 0.0 | 1204 |
| MS.gene050892.t1 | MTR_1g041895 | 73.348 | 469 | 98 | 2 | 1 | 442 | 1 | 469 | 0.0 | 687 |
| MS.gene050892.t1 | MTR_1g041895 | 63.184 | 201 | 69 | 3 | 442 | 641 | 630 | 826 | 6.35e-65 | 229 |
| MS.gene050892.t1 | MTR_7g113280 | 74.775 | 444 | 110 | 2 | 1 | 442 | 1 | 444 | 0.0 | 672 |
| MS.gene050892.t1 | MTR_7g113280 | 62.874 | 167 | 60 | 1 | 442 | 606 | 586 | 752 | 1.40e-54 | 199 |
| MS.gene050892.t1 | MTR_7g113270 | 75.506 | 445 | 100 | 3 | 1 | 442 | 1 | 439 | 0.0 | 649 |
| MS.gene050892.t1 | MTR_7g113270 | 71.429 | 175 | 49 | 1 | 445 | 619 | 581 | 754 | 8.66e-74 | 252 |
| MS.gene050892.t1 | MTR_7g113220 | 74.550 | 444 | 100 | 3 | 1 | 441 | 1 | 434 | 0.0 | 643 |
| MS.gene050892.t1 | MTR_7g113220 | 71.429 | 175 | 49 | 1 | 445 | 619 | 577 | 750 | 1.08e-72 | 249 |
| MS.gene050892.t1 | MTR_3g049350 | 91.393 | 244 | 19 | 1 | 278 | 519 | 4 | 247 | 4.67e-155 | 447 |
| MS.gene050892.t1 | MTR_7g112390 | 62.426 | 338 | 55 | 3 | 105 | 442 | 1 | 266 | 4.35e-129 | 397 |
| MS.gene050892.t1 | MTR_7g112390 | 54.774 | 199 | 55 | 3 | 442 | 639 | 527 | 691 | 7.79e-51 | 187 |
| MS.gene050892.t1 | MTR_7g108470 | 46.471 | 340 | 172 | 3 | 68 | 400 | 140 | 476 | 5.45e-97 | 318 |
| MS.gene050892.t1 | MTR_4g119630 | 39.945 | 363 | 174 | 5 | 13 | 336 | 31 | 388 | 3.43e-79 | 259 |
| MS.gene050892.t1 | MTR_2g436970 | 39.016 | 305 | 171 | 9 | 26 | 328 | 17 | 308 | 2.68e-58 | 202 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050892.t1 | AT1G09040 | 48.266 | 346 | 166 | 4 | 60 | 395 | 130 | 472 | 2.08e-96 | 316 |
| MS.gene050892.t1 | AT1G09050 | 48.348 | 333 | 161 | 3 | 71 | 395 | 143 | 472 | 1.13e-92 | 306 |
| MS.gene050892.t1 | AT1G09050 | 48.348 | 333 | 161 | 3 | 71 | 395 | 143 | 472 | 1.13e-92 | 306 |
| MS.gene050892.t1 | AT2G47820 | 36.543 | 457 | 211 | 9 | 25 | 406 | 37 | 489 | 5.35e-84 | 281 |
| MS.gene050892.t1 | AT2G47820 | 36.543 | 457 | 211 | 9 | 25 | 406 | 37 | 489 | 5.35e-84 | 281 |
| MS.gene050892.t1 | AT1G55050 | 37.783 | 442 | 202 | 7 | 26 | 406 | 27 | 456 | 2.14e-82 | 278 |
| MS.gene050892.t1 | AT1G55050 | 37.783 | 442 | 202 | 7 | 26 | 406 | 27 | 456 | 2.14e-82 | 278 |
Find 118 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCAAGATTCTTTGTTAC+AGG | 0.220266 | 7.1:-3108340 | MS.gene050892:intron |
| CCAGAAGAGTTCATTACTTT+TGG | 0.252967 | 7.1:+3107852 | None:intergenic |
| ACTTTACTCACTGAATTAAT+AGG | 0.270204 | 7.1:+3107415 | None:intergenic |
| TCGGAGTGCATGAAGTTAAA+AGG | 0.272347 | 7.1:-3108450 | MS.gene050892:CDS |
| TGTTACCTCTGATGATTATC+TGG | 0.279909 | 7.1:-3107764 | MS.gene050892:CDS |
| CCAAAAGTAATGAACTCTTC+TGG | 0.298884 | 7.1:-3107852 | MS.gene050892:CDS |
| CATGGTTCCTGATGCCAGTT+TGG | 0.323236 | 7.1:-3107482 | MS.gene050892:CDS |
| TGCAAAACTTTGTCTTCTCT+TGG | 0.332450 | 7.1:-3107925 | MS.gene050892:CDS |
| GGAATTTCCGCCTGGTATTC+CGG | 0.334652 | 7.1:+3108741 | None:intergenic |
| ACGGAAAGCCATCTGATCTA+AGG | 0.340846 | 7.1:-3107453 | MS.gene050892:CDS |
| AATCTTTGACAGGAGGATTT+CGG | 0.353199 | 7.1:-3107885 | MS.gene050892:CDS |
| CGACTGCTTCTTCTTCTTTG+AGG | 0.363013 | 7.1:+3107623 | None:intergenic |
| AACTCTTCTGGGAAGCTGTT+TGG | 0.365864 | 7.1:-3107840 | MS.gene050892:CDS |
| AAAGGGAGAAAATGTATGAT+TGG | 0.366261 | 7.1:-3108432 | MS.gene050892:CDS |
| TTTCTATTGCTCTGTCTCCT+TGG | 0.376494 | 7.1:+3106893 | None:intergenic |
| TAAGATGATCTTGGTGTGTC+TGG | 0.380602 | 7.1:+3106789 | None:intergenic |
| CTTTCCGTCATGAGCCAAAC+TGG | 0.381154 | 7.1:+3107468 | None:intergenic |
| GAGATAGAAAAGGGATCAAA+TGG | 0.390082 | 7.1:-3107583 | MS.gene050892:CDS |
| TCTTTGAGGACGAGAATATT+CGG | 0.393562 | 7.1:+3107637 | None:intergenic |
| CAAAAGTAATGAACTCTTCT+GGG | 0.407006 | 7.1:-3107851 | MS.gene050892:CDS |
| ACTATGCTTGGTGTCGAACC+TGG | 0.407445 | 7.1:-3107979 | MS.gene050892:CDS |
| TAAAGATCACATCAAATTCA+TGG | 0.412175 | 7.1:-3107500 | MS.gene050892:CDS |
| AAATCACGCTCCTATGCAAT+TGG | 0.415021 | 7.1:-3108648 | MS.gene050892:CDS |
| CTTCTCTGATTTCTTAATCA+AGG | 0.416004 | 7.1:+3108716 | None:intergenic |
| CATAGAACTCCTTGTGATGT+TGG | 0.427764 | 7.1:-3106944 | MS.gene050892:CDS |
| CCTCGTCATTGTTCAGATCA+TGG | 0.433562 | 7.1:-3106725 | MS.gene050892:CDS |
| TTCAATTCCCTTAGATCAGA+TGG | 0.449915 | 7.1:+3107445 | None:intergenic |
| AATCTGATGGATTTCGTAGA+TGG | 0.452593 | 7.1:-3108473 | MS.gene050892:CDS |
| ATGGATCATGCGTCTTATGA+AGG | 0.458560 | 7.1:-3108789 | MS.gene050892:CDS |
| TAGTTCATGTTGCCTTGGTC+CGG | 0.458759 | 7.1:+3108395 | None:intergenic |
| TCATGAGCCAAACTGGCATC+AGG | 0.465831 | 7.1:+3107475 | None:intergenic |
| AAAGATTCATTGAGAACAAA+GGG | 0.468914 | 7.1:-3108536 | MS.gene050892:CDS |
| AGCAAGGATTAAGATGATCT+TGG | 0.470445 | 7.1:+3106780 | None:intergenic |
| AAGGGAGAAAATGTATGATT+GGG | 0.474008 | 7.1:-3108431 | MS.gene050892:CDS |
| TCCAATGCTCTAACTGTCAA+TGG | 0.474242 | 7.1:+3106866 | None:intergenic |
| AATGGTGGAAGAAGCCAAGC+AGG | 0.474606 | 7.1:-3107026 | MS.gene050892:CDS |
| TCCTTGTGATGTTGGTTCGT+TGG | 0.475667 | 7.1:-3106936 | MS.gene050892:CDS |
| TCTTCTTTGAAGTTAACTGT+TGG | 0.479265 | 7.1:-3108054 | MS.gene050892:CDS |
| CTCGTCATTGTTCAGATCAT+GGG | 0.487535 | 7.1:-3106724 | MS.gene050892:CDS |
| TCTGATTTCTTAATCAAGGA+AGG | 0.491698 | 7.1:+3108720 | None:intergenic |
| CTTGAATCGAGTCCTCGAAT+AGG | 0.496723 | 7.1:-3108765 | MS.gene050892:CDS |
| CTATTCGAGGACTCGATTCA+AGG | 0.497921 | 7.1:+3108766 | None:intergenic |
| ACCATTGACAGTTAGAGCAT+TGG | 0.500083 | 7.1:-3106867 | MS.gene050892:CDS |
| GATATATTACAATCTTTGAC+AGG | 0.500185 | 7.1:-3107895 | MS.gene050892:CDS |
| TGCTGCAAGGATTGTAAAAG+AGG | 0.501061 | 7.1:-3106761 | MS.gene050892:CDS |
| AAGGGAGACCTTACTATGCT+TGG | 0.508646 | 7.1:-3107991 | MS.gene050892:CDS |
| TGGTATTCCGGACCTATTCG+AGG | 0.509678 | 7.1:+3108753 | None:intergenic |
| GTTCGACACCAAGCATAGTA+AGG | 0.513375 | 7.1:+3107983 | None:intergenic |
| CGGAGTGCATGAAGTTAAAA+GGG | 0.513886 | 7.1:-3108449 | MS.gene050892:CDS |
| TTCATTGAGAACAAAGGGAT+GGG | 0.514764 | 7.1:-3108531 | MS.gene050892:CDS |
| TCGAATAGGTCCGGAATACC+AGG | 0.518214 | 7.1:-3108751 | MS.gene050892:CDS |
| CGCTAACTGAATCAAAGTAA+TGG | 0.519124 | 7.1:+3107686 | None:intergenic |
| AACGTCCGACTGTTCTTCCC+AGG | 0.523209 | 7.1:+3107961 | None:intergenic |
| CTTGAAAACTTCTCAACACC+GGG | 0.523734 | 7.1:+3107730 | None:intergenic |
| CAATGAGGAAGAGATAGAAA+AGG | 0.526578 | 7.1:-3107593 | MS.gene050892:CDS |
| GATAATAGTTCATGTTGCCT+TGG | 0.527370 | 7.1:+3108390 | None:intergenic |
| ATCGAGTCCTCGAATAGGTC+CGG | 0.527806 | 7.1:-3108760 | MS.gene050892:CDS |
| AATGAGGAAGAGATAGAAAA+GGG | 0.530032 | 7.1:-3107592 | MS.gene050892:CDS |
| CTTGTGGAAGCAGTAGGGAT+TGG | 0.530676 | 7.1:-3108021 | MS.gene050892:CDS |
| ATCGCTCCATGTTTCTGACA+TGG | 0.531800 | 7.1:+3108620 | None:intergenic |
| CGCGCTTACTAGCAAGAGGA+TGG | 0.533696 | 7.1:-3107816 | MS.gene050892:CDS |
| TGTTGGAATAAACGTTCTTG+TGG | 0.536729 | 7.1:-3108037 | MS.gene050892:CDS |
| AAAAGATTCATTGAGAACAA+AGG | 0.544303 | 7.1:-3108537 | MS.gene050892:CDS |
| AGTAGGGATTGGTAACAAGA+AGG | 0.546680 | 7.1:-3108010 | MS.gene050892:CDS |
| CGGAAAGCCATCTGATCTAA+GGG | 0.547174 | 7.1:-3107452 | MS.gene050892:CDS |
| TCAGCAGGATTCATTTGAAG+TGG | 0.550741 | 7.1:+3108690 | None:intergenic |
| GTAGGGATTGGTAACAAGAA+GGG | 0.553888 | 7.1:-3108009 | MS.gene050892:CDS |
| AGAAGCCAAGCAGGGCGTAA+AGG | 0.554185 | 7.1:-3107017 | MS.gene050892:CDS |
| AACGTTCTTGTGGAAGCAGT+AGG | 0.554364 | 7.1:-3108027 | MS.gene050892:CDS |
| TGTCTCCTTGGATTTAGATG+AGG | 0.555499 | 7.1:+3106905 | None:intergenic |
| TCAGTTAGTCATCAGCAGAA+TGG | 0.556880 | 7.1:-3107223 | MS.gene050892:CDS |
| TCAAGGAAGGAATTTCCGCC+TGG | 0.558314 | 7.1:+3108733 | None:intergenic |
| AATTCTTGCATGTGCCAAAG+AGG | 0.562079 | 7.1:-3106829 | MS.gene050892:CDS |
| TCAAGGAGAAAACTAGTGAA+AGG | 0.565642 | 7.1:-3107712 | MS.gene050892:CDS |
| CCTTGAAAACTTCTCAACAC+CGG | 0.567703 | 7.1:+3107729 | None:intergenic |
| AACAGCCTCATCTAAATCCA+AGG | 0.573780 | 7.1:-3106910 | MS.gene050892:CDS |
| ACGTTCTTGTGGAAGCAGTA+GGG | 0.575109 | 7.1:-3108026 | MS.gene050892:CDS |
| AAAGTTGATGTAGATGCTGC+TGG | 0.579391 | 7.1:-3107397 | MS.gene050892:CDS |
| TGAATAACAGATGCGAGACA+TGG | 0.579514 | 7.1:+3106986 | None:intergenic |
| ATCGAGGCTTGAGGTAACAT+TGG | 0.580406 | 7.1:+3107536 | None:intergenic |
| CAGCAGGATTCATTTGAAGT+GGG | 0.580828 | 7.1:+3108691 | None:intergenic |
| CAGATAAACTAGGATTCTCT+CGG | 0.581610 | 7.1:-3107285 | MS.gene050892:CDS |
| TCATTGAGAACAAAGGGATG+GGG | 0.582098 | 7.1:-3108530 | MS.gene050892:CDS |
| CTATGCTTGGTGTCGAACCT+GGG | 0.583951 | 7.1:-3107978 | MS.gene050892:CDS |
| AAGTAGAAAACATCTTGTAT+CGG | 0.587062 | 7.1:+3108596 | None:intergenic |
| TTTCAGCATTAACATACCGC+AGG | 0.591478 | 7.1:-3107083 | MS.gene050892:CDS |
| ACAAAGTTGACAGATAAACT+AGG | 0.593475 | 7.1:-3107295 | MS.gene050892:CDS |
| TCATCTTAATCCTTGCTGCA+AGG | 0.595537 | 7.1:-3106774 | MS.gene050892:CDS |
| TGGCCGCGCTTACTAGCAAG+AGG | 0.599467 | 7.1:-3107820 | MS.gene050892:CDS |
| TCGCTCCATGTTTCTGACAT+GGG | 0.605733 | 7.1:+3108621 | None:intergenic |
| ACATCACAAGGAGTTCTATG+AGG | 0.607726 | 7.1:+3106947 | None:intergenic |
| GAGGAAAGTAAATCATAGCA+AGG | 0.608929 | 7.1:-3107347 | MS.gene050892:CDS |
| ATTCATTGAGAACAAAGGGA+TGG | 0.610344 | 7.1:-3108532 | MS.gene050892:CDS |
| GTTTACCCATGTCAGAAACA+TGG | 0.611769 | 7.1:-3108626 | MS.gene050892:CDS |
| CATGGGTAAACCAATTGCAT+AGG | 0.615617 | 7.1:+3108638 | None:intergenic |
| ATATTACAATCTTTGACAGG+AGG | 0.616161 | 7.1:-3107892 | MS.gene050892:CDS |
| TGATGGATTTCGTAGATGGT+CGG | 0.616885 | 7.1:-3108469 | MS.gene050892:CDS |
| TGAGATTCTTCAGATACATG+TGG | 0.619350 | 7.1:+3108357 | None:intergenic |
| GTTTCTAAGTCATACGTGGA+AGG | 0.621769 | 7.1:-3108102 | MS.gene050892:CDS |
| CATTGAGAACAAAGGGATGG+GGG | 0.623590 | 7.1:-3108529 | MS.gene050892:CDS |
| AAGTAGAAGATCGAGGCTTG+AGG | 0.632017 | 7.1:+3107527 | None:intergenic |
| GATGCCAGTTTGGCTCATGA+CGG | 0.633667 | 7.1:-3107472 | MS.gene050892:CDS |
| TTCTTCAGCAAACAGAAATG+TGG | 0.638197 | 7.1:-3107188 | MS.gene050892:CDS |
| CATCCTCTTGCTAGTAAGCG+CGG | 0.640385 | 7.1:+3107817 | None:intergenic |
| ATGGTGGAAGAAGCCAAGCA+GGG | 0.647614 | 7.1:-3107025 | MS.gene050892:CDS |
| CTCAAAGAAGAAGAAGCAGT+CGG | 0.649922 | 7.1:-3107622 | MS.gene050892:CDS |
| TCGAACCTGGGAAGAACAGT+CGG | 0.651934 | 7.1:-3107966 | MS.gene050892:CDS |
| TCCAACGAACCAACATCACA+AGG | 0.651942 | 7.1:+3106935 | None:intergenic |
| AGCAGTCGGTAGCTGCAATG+AGG | 0.651991 | 7.1:-3107608 | MS.gene050892:CDS |
| TGTTATTCAAGAAATAGTTG+AGG | 0.663616 | 7.1:-3106972 | MS.gene050892:CDS |
| AAAGATTGTAATATATCACT+CGG | 0.663784 | 7.1:+3107901 | None:intergenic |
| TCAGAATTCGAAGGAACCTG+CGG | 0.671588 | 7.1:+3107067 | None:intergenic |
| CCATGATCTGAACAATGACG+AGG | 0.689949 | 7.1:+3106725 | None:intergenic |
| TCTGAGCAAACAAAGTATCG+AGG | 0.704395 | 7.1:-3107790 | MS.gene050892:CDS |
| TCAGGTTTCTAAGTCATACG+TGG | 0.707620 | 7.1:-3108106 | MS.gene050892:intron |
| TTACTGTAAGTAGAAGATCG+AGG | 0.716574 | 7.1:+3107520 | None:intergenic |
| ATAAAGGGCACAAATATACG+AGG | 0.729913 | 7.1:-3107366 | MS.gene050892:CDS |
| AATAGGTCCGGAATACCAGG+CGG | 0.777984 | 7.1:-3108748 | MS.gene050892:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAATAATTTCATTTTACTA+TGG | - | chr7.1:3107024-3107043 | MS.gene050892:CDS | 15.0% |
| !!! | GAATTATAATGATATTTTCA+TGG | - | chr7.1:3106723-3106742 | MS.gene050892:CDS | 15.0% |
| !!! | TACTTAGTTTGTTTATTTTT+GGG | - | chr7.1:3106953-3106972 | MS.gene050892:CDS | 15.0% |
| !! | AAAGATTGTAATATATCACT+CGG | + | chr7.1:3107633-3107652 | None:intergenic | 20.0% |
| !! | ACCTAATAAAGAAATAAGAT+GGG | + | chr7.1:3107238-3107257 | None:intergenic | 20.0% |
| !!! | CTACTTAGTTTGTTTATTTT+TGG | - | chr7.1:3106952-3106971 | MS.gene050892:CDS | 20.0% |
| !!! | TAAAGAAAAAAGTACTGATA+CGG | + | chr7.1:3107359-3107378 | None:intergenic | 20.0% |
| !!! | TTCTGAAAATAGAAAAATGA+TGG | - | chr7.1:3108481-3108500 | MS.gene050892:CDS | 20.0% |
| ! | AAAAGATTCATTGAGAACAA+AGG | - | chr7.1:3106994-3107013 | MS.gene050892:CDS | 25.0% |
| ! | AAAGATTCATTGAGAACAAA+GGG | - | chr7.1:3106995-3107014 | MS.gene050892:CDS | 25.0% |
| ! | AAATAGAAAAATGATGGCAA+TGG | - | chr7.1:3108487-3108506 | MS.gene050892:CDS | 25.0% |
| ! | AAGTAGAAAACATCTTGTAT+CGG | + | chr7.1:3106938-3106957 | None:intergenic | 25.0% |
| ! | AATAAAGAAATAAGATGGGA+TGG | + | chr7.1:3107234-3107253 | None:intergenic | 25.0% |
| ! | ACTTTACTCACTGAATTAAT+AGG | + | chr7.1:3108119-3108138 | None:intergenic | 25.0% |
| ! | ATAAAGAAATAAGATGGGAT+GGG | + | chr7.1:3107233-3107252 | None:intergenic | 25.0% |
| ! | CACCTAATAAAGAAATAAGA+TGG | + | chr7.1:3107239-3107258 | None:intergenic | 25.0% |
| ! | CTGCTGGTAAAAAATATAAA+GGG | - | chr7.1:3108150-3108169 | MS.gene050892:intron | 25.0% |
| ! | GATATATTACAATCTTTGAC+AGG | - | chr7.1:3107636-3107655 | MS.gene050892:CDS | 25.0% |
| ! | TAAAGATCACATCAAATTCA+TGG | - | chr7.1:3108031-3108050 | MS.gene050892:CDS | 25.0% |
| ! | TAACTGAACCACAAAAAATT+TGG | + | chr7.1:3108295-3108314 | None:intergenic | 25.0% |
| ! | TGTTATTCAAGAAATAGTTG+AGG | - | chr7.1:3108559-3108578 | MS.gene050892:CDS | 25.0% |
| !! | TCCCATCTTATTTCTTTATT+AGG | - | chr7.1:3107234-3107253 | MS.gene050892:CDS | 25.0% |
| !! | TTTCTATTTTCAGAATTCGA+AGG | + | chr7.1:3108476-3108495 | None:intergenic | 25.0% |
| !!! | AAAGAAAAAAGTACTGATAC+GGG | + | chr7.1:3107358-3107377 | None:intergenic | 25.0% |
| AAAAACCAGATAATCATCAG+AGG | + | chr7.1:3107775-3107794 | None:intergenic | 30.0% | |
| AAAGGGAGAAAATGTATGAT+TGG | - | chr7.1:3107099-3107118 | MS.gene050892:CDS | 30.0% | |
| AAGGGAGAAAATGTATGATT+GGG | - | chr7.1:3107100-3107119 | MS.gene050892:CDS | 30.0% | |
| AATGAGGAAGAGATAGAAAA+GGG | - | chr7.1:3107939-3107958 | MS.gene050892:CDS | 30.0% | |
| ACAAAGTTGACAGATAAACT+AGG | - | chr7.1:3108236-3108255 | MS.gene050892:intron | 30.0% | |
| ATATTACAATCTTTGACAGG+AGG | - | chr7.1:3107639-3107658 | MS.gene050892:CDS | 30.0% | |
| ATCTCAAGATTCTTTGTTAC+AGG | - | chr7.1:3107191-3107210 | MS.gene050892:CDS | 30.0% | |
| CAAAAGTAATGAACTCTTCT+GGG | - | chr7.1:3107680-3107699 | MS.gene050892:CDS | 30.0% | |
| CTTCTCTGATTTCTTAATCA+AGG | + | chr7.1:3106818-3106837 | None:intergenic | 30.0% | |
| GCTGCTGGTAAAAAATATAA+AGG | - | chr7.1:3108149-3108168 | MS.gene050892:intron | 30.0% | |
| TAACAAATACAAGCAAAGTG+AGG | + | chr7.1:3107402-3107421 | None:intergenic | 30.0% | |
| TACTCCATTGTAATTACCAT+TGG | + | chr7.1:3107281-3107300 | None:intergenic | 30.0% | |
| TCTGATTTCTTAATCAAGGA+AGG | + | chr7.1:3106814-3106833 | None:intergenic | 30.0% | |
| ! | ATTGGGAAGAAACTTTTTAC+CGG | - | chr7.1:3107117-3107136 | MS.gene050892:CDS | 30.0% |
| ! | GGAAAGTTTTACAAATCTGA+TGG | - | chr7.1:3107045-3107064 | MS.gene050892:CDS | 30.0% |
| ! | TGAAAATCTTTTGAATCAGC+AGG | + | chr7.1:3106859-3106878 | None:intergenic | 30.0% |
| !! | TCTTCTTTGAAGTTAACTGT+TGG | - | chr7.1:3107477-3107496 | MS.gene050892:CDS | 30.0% |
| !! | TGCTTGTATTTGTTATACTC+AGG | - | chr7.1:3107407-3107426 | MS.gene050892:CDS | 30.0% |
| !!! | GATGCTAACCAAATTTTTTG+TGG | - | chr7.1:3108284-3108303 | MS.gene050892:intron | 30.0% |
| !!! | TATCTGGTTTTTCTTATTCC+CGG | - | chr7.1:3107783-3107802 | MS.gene050892:CDS | 30.0% |
| AATCTTTGACAGGAGGATTT+CGG | - | chr7.1:3107646-3107665 | MS.gene050892:CDS | 35.0% | |
| AGCAAGGATTAAGATGATCT+TGG | + | chr7.1:3108754-3108773 | None:intergenic | 35.0% | |
| AGTGCCAATGGTAATTACAA+TGG | - | chr7.1:3107274-3107293 | MS.gene050892:CDS | 35.0% | |
| ATTCATTGAGAACAAAGGGA+TGG | - | chr7.1:3106999-3107018 | MS.gene050892:CDS | 35.0% | |
| CAATGAGGAAGAGATAGAAA+AGG | - | chr7.1:3107938-3107957 | MS.gene050892:CDS | 35.0% | |
| CAGATAAACTAGGATTCTCT+CGG | - | chr7.1:3108246-3108265 | MS.gene050892:intron | 35.0% | |
| CCAAAAGTAATGAACTCTTC+TGG | - | chr7.1:3107679-3107698 | MS.gene050892:CDS | 35.0% | |
| CGCTAACTGAATCAAAGTAA+TGG | + | chr7.1:3107848-3107867 | None:intergenic | 35.0% | |
| GAGATAGAAAAGGGATCAAA+TGG | - | chr7.1:3107948-3107967 | MS.gene050892:CDS | 35.0% | |
| GAGGAAAGTAAATCATAGCA+AGG | - | chr7.1:3108184-3108203 | MS.gene050892:intron | 35.0% | |
| GATAATAGTTCATGTTGCCT+TGG | + | chr7.1:3107144-3107163 | None:intergenic | 35.0% | |
| TAGAAAAATGATGGCAATGG+TGG | - | chr7.1:3108490-3108509 | MS.gene050892:CDS | 35.0% | |
| TCAAGGAGAAAACTAGTGAA+AGG | - | chr7.1:3107819-3107838 | MS.gene050892:CDS | 35.0% | |
| TGAGATTCTTCAGATACATG+TGG | + | chr7.1:3107177-3107196 | None:intergenic | 35.0% | |
| TGCAAAACTTTGTCTTCTCT+TGG | - | chr7.1:3107606-3107625 | MS.gene050892:CDS | 35.0% | |
| TGTTACCTCTGATGATTATC+TGG | - | chr7.1:3107767-3107786 | MS.gene050892:CDS | 35.0% | |
| TGTTGGAATAAACGTTCTTG+TGG | - | chr7.1:3107494-3107513 | MS.gene050892:CDS | 35.0% | |
| TTACTGTAAGTAGAAGATCG+AGG | + | chr7.1:3108014-3108033 | None:intergenic | 35.0% | |
| TTCAATTCCCTTAGATCAGA+TGG | + | chr7.1:3108089-3108108 | None:intergenic | 35.0% | |
| TTCATTGAGAACAAAGGGAT+GGG | - | chr7.1:3107000-3107019 | MS.gene050892:CDS | 35.0% | |
| TTCTTCAGCAAACAGAAATG+TGG | - | chr7.1:3108343-3108362 | MS.gene050892:CDS | 35.0% | |
| ! | ATAAAGGGCACAAATATACG+AGG | - | chr7.1:3108165-3108184 | MS.gene050892:intron | 35.0% |
| ! | CCAGAAGAGTTCATTACTTT+TGG | + | chr7.1:3107682-3107701 | None:intergenic | 35.0% |
| ! | GAAGACAAAGTTTTGCAAGT+TGG | + | chr7.1:3107603-3107622 | None:intergenic | 35.0% |
| ! | TCTTTGAGGACGAGAATATT+CGG | + | chr7.1:3107897-3107916 | None:intergenic | 35.0% |
| !! | AATCTGATGGATTTCGTAGA+TGG | - | chr7.1:3107058-3107077 | MS.gene050892:CDS | 35.0% |
| !!! | TCTTTCCTTTTTTGCCTCTT+TGG | + | chr7.1:3108719-3108738 | None:intergenic | 35.0% |
| AAATCACGCTCCTATGCAAT+TGG | - | chr7.1:3106883-3106902 | MS.gene050892:CDS | 40.0% | |
| AACAGCCTCATCTAAATCCA+AGG | - | chr7.1:3108621-3108640 | MS.gene050892:CDS | 40.0% | |
| AATTCTTGCATGTGCCAAAG+AGG | - | chr7.1:3108702-3108721 | MS.gene050892:CDS | 40.0% | |
| ACATCACAAGGAGTTCTATG+AGG | + | chr7.1:3108587-3108606 | None:intergenic | 40.0% | |
| ACCATTGACAGTTAGAGCAT+TGG | - | chr7.1:3108664-3108683 | MS.gene050892:CDS | 40.0% | |
| AGAAATAAGATGGGATGGGA+TGG | + | chr7.1:3107229-3107248 | None:intergenic | 40.0% | |
| ATGGATCATGCGTCTTATGA+AGG | - | chr7.1:3106742-3106761 | MS.gene050892:CDS | 40.0% | |
| ATGTGCCAAAGAGGCAAAAA+AGG | - | chr7.1:3108711-3108730 | MS.gene050892:CDS | 40.0% | |
| CATAGAACTCCTTGTGATGT+TGG | - | chr7.1:3108587-3108606 | MS.gene050892:CDS | 40.0% | |
| CATGGGTAAACCAATTGCAT+AGG | + | chr7.1:3106896-3106915 | None:intergenic | 40.0% | |
| CCTTGAAAACTTCTCAACAC+CGG | + | chr7.1:3107805-3107824 | None:intergenic | 40.0% | |
| CGGAGTGCATGAAGTTAAAA+GGG | - | chr7.1:3107082-3107101 | MS.gene050892:CDS | 40.0% | |
| CTCAAAGAAGAAGAAGCAGT+CGG | - | chr7.1:3107909-3107928 | MS.gene050892:CDS | 40.0% | |
| CTCGTCATTGTTCAGATCAT+GGG | - | chr7.1:3108807-3108826 | MS.gene050892:CDS | 40.0% | |
| CTTGAAAACTTCTCAACACC+GGG | + | chr7.1:3107804-3107823 | None:intergenic | 40.0% | |
| GTTTACCCATGTCAGAAACA+TGG | - | chr7.1:3106905-3106924 | MS.gene050892:CDS | 40.0% | |
| GTTTCTAAGTCATACGTGGA+AGG | - | chr7.1:3107429-3107448 | MS.gene050892:CDS | 40.0% | |
| TCAGCAGGATTCATTTGAAG+TGG | + | chr7.1:3106844-3106863 | None:intergenic | 40.0% | |
| TCAGGTTTCTAAGTCATACG+TGG | - | chr7.1:3107425-3107444 | MS.gene050892:CDS | 40.0% | |
| TCAGTTAGTCATCAGCAGAA+TGG | - | chr7.1:3108308-3108327 | MS.gene050892:intron | 40.0% | |
| TCATCTTAATCCTTGCTGCA+AGG | - | chr7.1:3108757-3108776 | MS.gene050892:CDS | 40.0% | |
| TCATTGAGAACAAAGGGATG+GGG | - | chr7.1:3107001-3107020 | MS.gene050892:CDS | 40.0% | |
| TCCAATGCTCTAACTGTCAA+TGG | + | chr7.1:3108668-3108687 | None:intergenic | 40.0% | |
| TCGGAGTGCATGAAGTTAAA+AGG | - | chr7.1:3107081-3107100 | MS.gene050892:CDS | 40.0% | |
| TGAATAACAGATGCGAGACA+TGG | + | chr7.1:3108548-3108567 | None:intergenic | 40.0% | |
| TGCTGCAAGGATTGTAAAAG+AGG | - | chr7.1:3108770-3108789 | MS.gene050892:CDS | 40.0% | |
| TGTCTCCTTGGATTTAGATG+AGG | + | chr7.1:3108629-3108648 | None:intergenic | 40.0% | |
| TTTCAGCATTAACATACCGC+AGG | - | chr7.1:3108448-3108467 | MS.gene050892:CDS | 40.0% | |
| TTTCTATTGCTCTGTCTCCT+TGG | + | chr7.1:3108641-3108660 | None:intergenic | 40.0% | |
| ! | AGAAACTTTTTACCGGACCA+AGG | - | chr7.1:3107124-3107143 | MS.gene050892:CDS | 40.0% |
| ! | AGTAGGGATTGGTAACAAGA+AGG | - | chr7.1:3107521-3107540 | MS.gene050892:CDS | 40.0% |
| ! | CAGCAGGATTCATTTGAAGT+GGG | + | chr7.1:3106843-3106862 | None:intergenic | 40.0% |
| ! | CTTTTACAATCCTTGCAGCA+AGG | + | chr7.1:3108770-3108789 | None:intergenic | 40.0% |
| ! | GTAGGGATTGGTAACAAGAA+GGG | - | chr7.1:3107522-3107541 | MS.gene050892:CDS | 40.0% |
| ! | TAAGATGATCTTGGTGTGTC+TGG | + | chr7.1:3108745-3108764 | None:intergenic | 40.0% |
| !! | AAAGTTGATGTAGATGCTGC+TGG | - | chr7.1:3108134-3108153 | MS.gene050892:intron | 40.0% |
| !! | TCTGAGCAAACAAAGTATCG+AGG | - | chr7.1:3107741-3107760 | MS.gene050892:CDS | 40.0% |
| !! | TGATGGATTTCGTAGATGGT+CGG | - | chr7.1:3107062-3107081 | MS.gene050892:CDS | 40.0% |
| !!! | TGTGCTTTTGATAGTGCCAA+TGG | - | chr7.1:3107262-3107281 | MS.gene050892:CDS | 40.0% |
| AACGTTCTTGTGGAAGCAGT+AGG | - | chr7.1:3107504-3107523 | MS.gene050892:CDS | 45.0% | |
| AAGGGAGACCTTACTATGCT+TGG | - | chr7.1:3107540-3107559 | MS.gene050892:CDS | 45.0% | |
| AAGTAGAAGATCGAGGCTTG+AGG | + | chr7.1:3108007-3108026 | None:intergenic | 45.0% | |
| ACGGAAAGCCATCTGATCTA+AGG | - | chr7.1:3108078-3108097 | MS.gene050892:CDS | 45.0% | |
| ACGTTCTTGTGGAAGCAGTA+GGG | - | chr7.1:3107505-3107524 | MS.gene050892:CDS | 45.0% | |
| ATCGAGGCTTGAGGTAACAT+TGG | + | chr7.1:3107998-3108017 | None:intergenic | 45.0% | |
| CATTGAGAACAAAGGGATGG+GGG | - | chr7.1:3107002-3107021 | MS.gene050892:CDS | 45.0% | |
| CCATGATCTGAACAATGACG+AGG | + | chr7.1:3108809-3108828 | None:intergenic | 45.0% | |
| CCTCGTCATTGTTCAGATCA+TGG | - | chr7.1:3108806-3108825 | MS.gene050892:CDS | 45.0% | |
| CGACTGCTTCTTCTTCTTTG+AGG | + | chr7.1:3107911-3107930 | None:intergenic | 45.0% | |
| CGGAAAGCCATCTGATCTAA+GGG | - | chr7.1:3108079-3108098 | MS.gene050892:CDS | 45.0% | |
| CTATTCGAGGACTCGATTCA+AGG | + | chr7.1:3106768-3106787 | None:intergenic | 45.0% | |
| CTTGAATCGAGTCCTCGAAT+AGG | - | chr7.1:3106766-3106785 | MS.gene050892:CDS | 45.0% | |
| GTTCGACACCAAGCATAGTA+AGG | + | chr7.1:3107551-3107570 | None:intergenic | 45.0% | |
| TAGTTCATGTTGCCTTGGTC+CGG | + | chr7.1:3107139-3107158 | None:intergenic | 45.0% | |
| TCAGAATTCGAAGGAACCTG+CGG | + | chr7.1:3108467-3108486 | None:intergenic | 45.0% | |
| TCCAACGAACCAACATCACA+AGG | + | chr7.1:3108599-3108618 | None:intergenic | 45.0% | |
| ! | AACTCTTCTGGGAAGCTGTT+TGG | - | chr7.1:3107691-3107710 | MS.gene050892:CDS | 45.0% |
| ! | ATCGCTCCATGTTTCTGACA+TGG | + | chr7.1:3106914-3106933 | None:intergenic | 45.0% |
| ! | TCGCTCCATGTTTCTGACAT+GGG | + | chr7.1:3106913-3106932 | None:intergenic | 45.0% |
| !! | CCGGTGTTGAGAAGTTTTCA+AGG | - | chr7.1:3107802-3107821 | MS.gene050892:CDS | 45.0% |
| !! | TCCTTGTGATGTTGGTTCGT+TGG | - | chr7.1:3108595-3108614 | MS.gene050892:CDS | 45.0% |
| AATAGGTCCGGAATACCAGG+CGG | - | chr7.1:3106783-3106802 | MS.gene050892:CDS | 50.0% | |
| ATCGAGTCCTCGAATAGGTC+CGG | - | chr7.1:3106771-3106790 | MS.gene050892:CDS | 50.0% | |
| CATCCTCTTGCTAGTAAGCG+CGG | + | chr7.1:3107717-3107736 | None:intergenic | 50.0% | |
| CATGGTTCCTGATGCCAGTT+TGG | - | chr7.1:3108049-3108068 | MS.gene050892:CDS | 50.0% | |
| CTTGTGGAAGCAGTAGGGAT+TGG | - | chr7.1:3107510-3107529 | MS.gene050892:CDS | 50.0% | |
| CTTTCCGTCATGAGCCAAAC+TGG | + | chr7.1:3108066-3108085 | None:intergenic | 50.0% | |
| GGAATTTCCGCCTGGTATTC+CGG | + | chr7.1:3106793-3106812 | None:intergenic | 50.0% | |
| TCAAGGAAGGAATTTCCGCC+TGG | + | chr7.1:3106801-3106820 | None:intergenic | 50.0% | |
| TCATGAGCCAAACTGGCATC+AGG | + | chr7.1:3108059-3108078 | None:intergenic | 50.0% | |
| TCGAACCTGGGAAGAACAGT+CGG | - | chr7.1:3107565-3107584 | MS.gene050892:CDS | 50.0% | |
| TCGAATAGGTCCGGAATACC+AGG | - | chr7.1:3106780-3106799 | MS.gene050892:CDS | 50.0% | |
| TGGTATTCCGGACCTATTCG+AGG | + | chr7.1:3106781-3106800 | None:intergenic | 50.0% | |
| ! | AATGGTGGAAGAAGCCAAGC+AGG | - | chr7.1:3108505-3108524 | MS.gene050892:CDS | 50.0% |
| ! | ATGGTGGAAGAAGCCAAGCA+GGG | - | chr7.1:3108506-3108525 | MS.gene050892:CDS | 50.0% |
| ! | GATGCCAGTTTGGCTCATGA+CGG | - | chr7.1:3108059-3108078 | MS.gene050892:CDS | 50.0% |
| ! | TTTTGCCTTTACGCCCTGCT+TGG | + | chr7.1:3108522-3108541 | None:intergenic | 50.0% |
| !! | ACTATGCTTGGTGTCGAACC+TGG | - | chr7.1:3107552-3107571 | MS.gene050892:CDS | 50.0% |
| !! | CTATGCTTGGTGTCGAACCT+GGG | - | chr7.1:3107553-3107572 | MS.gene050892:CDS | 50.0% |
| AACGTCCGACTGTTCTTCCC+AGG | + | chr7.1:3107573-3107592 | None:intergenic | 55.0% | |
| AGAAGCCAAGCAGGGCGTAA+AGG | - | chr7.1:3108514-3108533 | MS.gene050892:CDS | 55.0% | |
| AGCAGTCGGTAGCTGCAATG+AGG | - | chr7.1:3107923-3107942 | MS.gene050892:CDS | 55.0% | |
| CGCGCTTACTAGCAAGAGGA+TGG | - | chr7.1:3107715-3107734 | MS.gene050892:CDS | 55.0% | |
| TGGCCGCGCTTACTAGCAAG+AGG | - | chr7.1:3107711-3107730 | MS.gene050892:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 3106706 | 3108847 | 3106706 | ID=MS.gene050892 |
| chr7.1 | mRNA | 3106706 | 3108847 | 3106706 | ID=MS.gene050892.t1;Parent=MS.gene050892 |
| chr7.1 | exon | 3108341 | 3108847 | 3108341 | ID=MS.gene050892.t1.exon1;Parent=MS.gene050892.t1 |
| chr7.1 | CDS | 3108341 | 3108847 | 3108341 | ID=cds.MS.gene050892.t1;Parent=MS.gene050892.t1 |
| chr7.1 | exon | 3106706 | 3108124 | 3106706 | ID=MS.gene050892.t1.exon2;Parent=MS.gene050892.t1 |
| chr7.1 | CDS | 3106706 | 3108124 | 3106706 | ID=cds.MS.gene050892.t1;Parent=MS.gene050892.t1 |
| Gene Sequence |
| Protein sequence |
