AlfalfaGEDB | MS.gene67159

M. sativa cultivar XinJiangDaYe / MS.gene67159

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67159.t1	XP_013467079.1	85.1	843	118	3	1	839	1	839	0.00E+00	1377.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67159.t1	A0A072VGE3	85.1	843	118	3	1	839	1	839	0.0e+00	1377.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049669	MS.gene67159	0.80061	1.33E-48	-1.69E-46
MS.gene050750	MS.gene67159	0.805065	1.60E-49	-1.69E-46
MS.gene050953	MS.gene67159	0.817189	3.75E-52	-1.69E-46
MS.gene051926	MS.gene67159	-0.802758	4.82E-49	-1.69E-46
MS.gene052333	MS.gene67159	0.811808	5.82E-51	-1.69E-46
MS.gene052586	MS.gene67159	0.814705	1.34E-51	-1.69E-46
MS.gene053360	MS.gene67159	0.908672	1.32E-81	-1.69E-46
MS.gene05414	MS.gene67159	0.806256	8.99E-50	-1.69E-46
MS.gene05415	MS.gene67159	0.825985	3.48E-54	-1.69E-46
MS.gene054405	MS.gene67159	0.810435	1.15E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene050738	MS.gene67159	PPI
MS.gene072481	MS.gene67159	PPI
MS.gene67159	MS.gene78588	PPI
MS.gene67159	MS.gene054416	PPI
MS.gene67159	MS.gene65461	PPI
MS.gene67159	MS.gene78587	PPI
MS.gene67159	MS.gene29351	PPI
MS.gene67159	MS.gene050890	PPI
MS.gene67159	MS.gene050893	PPI
MS.gene67159	MS.gene050738	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67159.t1	MTR_1g041895	90.154	843	75	3	1	839	1	839	0.0	1522
MS.gene67159.t1	MTR_7g113270	69.485	816	181	12	1	807	1	757	0.0	1019
MS.gene67159.t1	MTR_7g113280	67.375	800	204	8	1	791	1	752	0.0	1006
MS.gene67159.t1	MTR_7g113220	68.627	816	184	12	1	807	1	753	0.0	1003
MS.gene67159.t1	MTR_7g112390	56.611	779	191	12	131	837	1	704	0.0	734
MS.gene67159.t1	MTR_7g113250	72.826	460	96	3	13	470	1	433	0.0	654
MS.gene67159.t1	MTR_7g113250	63.317	199	64	3	634	826	436	631	9.16e-66	231
MS.gene67159.t1	MTR_7g108470	42.348	477	214	9	4	426	6	475	1.05e-112	366
MS.gene67159.t1	MTR_4g119630	46.049	367	173	6	22	372	40	397	1.81e-96	309
MS.gene67159.t1	MTR_3g049350	66.972	218	54	2	304	519	3	204	1.67e-83	268

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67159.t1	AT1G09040	44.966	447	194	7	23	424	35	474	4.23e-112	364
MS.gene67159.t1	AT1G09050	44.072	447	198	7	23	424	35	474	5.77e-108	353
MS.gene67159.t1	AT1G09050	44.072	447	198	7	23	424	35	474	5.77e-108	353
MS.gene67159.t1	AT2G47820	41.328	467	216	10	18	433	30	489	1.43e-103	338
MS.gene67159.t1	AT2G47820	41.328	467	216	10	18	433	30	489	1.43e-103	338
MS.gene67159.t1	AT1G55050	42.825	446	201	9	26	433	27	456	1.27e-95	320
MS.gene67159.t1	AT1G55050	42.825	446	201	9	26	433	27	456	1.27e-95	320

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Find 177 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGATGGATATCGTAGA+TGG	0.508693	1.2:-26492220	MS.gene67159:CDS
AAAGATTCTTAGATAACAAG+CGG	0.587242	1.2:-26492283	MS.gene67159:CDS
AAAGTATCTTGCGATTCTTC+AGG	0.435378	1.2:+26492095	None:intergenic
AAAGTTGATGTAGATGCTGC+TGG	0.579391	1.2:-26491110	MS.gene67159:CDS
AAATAGCAAAATGATGGCAA+TGG	0.584646	1.2:-26490271	MS.gene67159:CDS
AAATCACTTTCCTTTGCAAT+TGG	0.386218	1.2:-26492473	MS.gene67159:CDS
AACGTTGTTGCATTCTGTTT+AGG	0.332484	1.2:+26491023	None:intergenic
AACTTATGATTCACCAAAGA+TGG	0.407799	1.2:-26490859	MS.gene67159:CDS
AAGAGAGACCTTACTAGGCT+TGG	0.528520	1.2:-26491707	MS.gene67159:CDS
AAGGAAAGTAAACCATAGCA+CGG	0.647183	1.2:-26491060	MS.gene67159:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAGCAAAATGATGGCAA+TGG	-	chr1.2:26492285-26492304	MS.gene67159:CDS	30.0%
AAATCACTTTCCTTTGCAAT+TGG	-	chr1.2:26490083-26490102	MS.gene67159:CDS	30.0%
AACTTATGATTCACCAAAGA+TGG	-	chr1.2:26491697-26491716	MS.gene67159:CDS	30.0%
ACTTTACTCACTGAATTAAC+AGG	+	chr1.2:26491431-26491450	None:intergenic	30.0%
AGACATCAATTCATGTCAAT+TGG	-	chr1.2:26490157-26490176	MS.gene67159:CDS	30.0%
ATAAAGGGCGAAAATATACA+AGG	-	chr1.2:26491477-26491496	MS.gene67159:CDS	30.0%
ATAATACAATCTTTGACTGG+AGG	-	chr1.2:26490951-26490970	MS.gene67159:CDS	30.0%
ATCATCATTGTTCAGATCAT+GGG	-	chr1.2:26492593-26492612	MS.gene67159:CDS	30.0%
CTAATTGGATCACAAACAAT+TGG	+	chr1.2:26492091-26492110	None:intergenic	30.0%
CTTTATTGTAGGAAGAAGAT+CGG	+	chr1.2:26491328-26491347	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	26489906	26492672	26489906	ID=MS.gene67159
chr1.2	mRNA	26489906	26492672	26489906	ID=MS.gene67159.t1;Parent=MS.gene67159
chr1.2	exon	26492088	26492672	26492088	ID=MS.gene67159.t1.exon1;Parent=MS.gene67159.t1
chr1.2	CDS	26492088	26492672	26492088	ID=cds.MS.gene67159.t1;Parent=MS.gene67159.t1
chr1.2	exon	26489906	26491840	26489906	ID=MS.gene67159.t1.exon2;Parent=MS.gene67159.t1
chr1.2	CDS	26489906	26491840	26489906	ID=cds.MS.gene67159.t1;Parent=MS.gene67159.t1

Gene Sequence

>MS.gene67159

ATGTTGTCCTTTGAGGAGAATGATGATGATATTTTCATGAAGCACGTTTCTCACGAAGGCCTTGATTTGAGTCCTAGAATAGGTCATGAGTACCAGGCAGAAATTCCTTCCATGCTTAGGAAATCGGAGCAGCTTTCACTTAGAACGAATCTTGGTGATTCAGAATCTGTGCTTGATAAATCACTTTCCTTTGCAATTGGTTTACCCATCCCAGTCACATGGATACATAATGAAGAGTGTGGATATCATGGAGACATCAATTCATGTCAATTGGCCCCTGGCCGATTGAGTATCTCCTGGACTGATGCAGATACAAAAAGTTTTCTACTTGGTTTGTTTATTTTTGGGAAGAATTTTATGCAGATAAAAAGATTCTTAGATAACAAGCGGATGGGGGAAATACTCTCATTTTACTATGGAAAGTTTTACAAAACAGATGGATATCGTAGATGGTCAGAGTGCAGGAAAAAAAAGGGAGGGAAACGTATGATAGGACAGAAACTTTTTAGTGGACCGAGGCAACATGAACTTTTGTCCCGCTTGATTACTCATGTACCTGAAGAATCGCAAGATACTTTGTTACAGGTATTCAACTGTTACATCTCATGTGTAGTCTTTCATTTAATGTTACAAAGTCAAAGCTTCTAATATTTGAAGCATCTTATTGTGATGGATCATGATTATTTGAACCTCTATGCCCACACCAGTACCTTTTTTTCATTACATCACACCAGCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATCATTTGCTCCAGTCCTCACTTTGCATATATTTATACTCAGGTTTCTAAGTCATATGTGGAGGGCAGAACTTCTCTAGAAGAATACATATCTTCTTTGAAGTCTATTGTTGGGCTTGGTGTTCTTGTGGAAGCAGTAGGTATTGGTAAGGAGAAGAGAGACCTTACTAGGCTTGGTGTCGAGCCTGTGAAGAACAGTCGTAAGGCGTTTTTAGAACCAACTTGCAAAGCTTTGTCTTCTCTTGGACTTAGTGATATAATACAATCTTTGACTGGAGGGTTTCGGCTGAGCAAAACCAAATGTAACGATCTCTTCTGGGAAGCTGTTTGGCCCCGCTTACTGGCAAGAGGTTGGCACTCTGAGCAACCAAAGAATCGAGGCTATGTTACCTCCAAAGATTATTTGGTTTTTCTCATTCCCGGTGTTGAGAAGTTTTCGAGGAGGAAACTTGTGAAAGGTCATCATTACTTTGATTCTGTTAGTGATGTCTTGAGCAAAGTAGTAGCTGAACCGAATATTCTCGTGCTCGAGGAAGAAGCTAAAGTTGGTAACTGTAATGAGGAAGGGCCAGAAAGGGGATCAAATGAAGAAGATGTATCTGACGATCATCGTCAATGTTACCTCAAGCCCCGATCTTCTTCCTACAATAAAGATTGTATAAAGTTCATGGTTATTGATACCAGTTTGGTACATGGCGGAAAGCCATCTGATCTAAGGGAATTGAAATCTATGCCTGTTAATTCAGTGAGTAAAGTTGATGTAGATGCTGCTGGTAAAAAATATAAAGGGCGAAAATATACAAGGAAAGTAAACCATAGCACGGATATGTCTAAAAGCCCTAAACAGAATGCAACAACGTTGACAGTTATTGATACCAATCGACTTTCTGACGGAAAAGTATTGAAGGTTAAATTGAAACAACTGAAAAGTCCGCCAGTTGAATTAGAAGATGCTCCCACAACGACTACTGGTCTTTGGAGAGAAAGTAAGGGTGGCTCTTCAACTTATGATTCACCAAAGATGGTGGAACCTAAAATGCTGATATGTGGCAAAAAGAAAATCAATAAAACCGACAGTCACAGAGGTGTATCTAACAGCGGTGCTACTAGTAAAATACAAGCATACGATAATGATGCAAACAAGATGGTTGAAAACCAGAGAAATCAACACGCCTGTGTGTTCGATGATAATCGACCAAAGAGGATCATAAAGCATCAGTTCAATCGGAGAGTAAGATCAGGTGACTCTAATCATACAGTTGTTCCTATTAAAAGGAGGAGATTGACTGCTTGTGCCAAGGAAGAGAAAAGCCGCATTGTTGAGAATTCTTCAGGAGGTGTGGGATCAGATAATCTAGGATTTTCTCCGTCTTCTAGCTTTCGAGTTGCCAACCCAATTGTTTGTGATCCAATTAGTCATCAGCAGAATCGAAGTTCATCTGCTTCTTCAGCAGACAGAAGCCTGGCAGAGGAGGATGATGAAAAAAGCATTCACAACGACAGTAATCAATGCGTGAGTGTTTCTAGTGCTAAAGTTGCGAAATGTGAATCTTTCAGTTTCAACATGCCTCAGGTTCTGTCGAATTCTGAAAATAGCAAAATGATGGCAATGGCGGAGGAAGGCGGGCAACACCTAAAGGCAAAAGATCCATGTCTAACAGATGCCACTCAGGAAGTAGTTGAGGAGCCTGTTGGTTATTTGGAAAAACAGCCTCAGCGTGACATAAATCCTAGGAGACAAAGCACTAGAAACAGACCGTTGACAGTTAGAGCATTGGAATGTATAGCAAATGAATATCTGCATGTACAAAAGAGACAAAAAAAGAAAGACATCCAGACACACAAAGATCCTTTCAATCCTTGCCGAATTGCTCGAACAAAAGGCAAATCAATGCTGCATCATCATTGTTCAGATCATGGGAATGAAGTTTTAGTACAAGAAGAAAAACATTTGATTGGAGATGGTAGTGTTAGCTAA

Protein sequence

>MS.gene67159.t1

MLSFEENDDDIFMKHVSHEGLDLSPRIGHEYQAEIPSMLRKSEQLSLRTNLGDSESVLDKSLSFAIGLPIPVTWIHNEECGYHGDINSCQLAPGRLSISWTDADTKSFLLGLFIFGKNFMQIKRFLDNKRMGEILSFYYGKFYKTDGYRRWSECRKKKGGKRMIGQKLFSGPRQHELLSRLITHVPEESQDTLLQVSKSYVEGRTSLEEYISSLKSIVGLGVLVEAVGIGKEKRDLTRLGVEPVKNSRKAFLEPTCKALSSLGLSDIIQSLTGGFRLSKTKCNDLFWEAVWPRLLARGWHSEQPKNRGYVTSKDYLVFLIPGVEKFSRRKLVKGHHYFDSVSDVLSKVVAEPNILVLEEEAKVGNCNEEGPERGSNEEDVSDDHRQCYLKPRSSSYNKDCIKFMVIDTSLVHGGKPSDLRELKSMPVNSVSKVDVDAAGKKYKGRKYTRKVNHSTDMSKSPKQNATTLTVIDTNRLSDGKVLKVKLKQLKSPPVELEDAPTTTTGLWRESKGGSSTYDSPKMVEPKMLICGKKKINKTDSHRGVSNSGATSKIQAYDNDANKMVENQRNQHACVFDDNRPKRIIKHQFNRRVRSGDSNHTVVPIKRRRLTACAKEEKSRIVENSSGGVGSDNLGFSPSSSFRVANPIVCDPISHQQNRSSSASSADRSLAEEDDEKSIHNDSNQCVSVSSAKVAKCESFSFNMPQVLSNSENSKMMAMAEEGGQHLKAKDPCLTDATQEVVEEPVGYLEKQPQRDINPRRQSTRNRPLTVRALECIANEYLHVQKRQKKKDIQTHKDPFNPCRIARTKGKSMLHHHCSDHGNEVLVQEEKHLIGDGSVS