Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054416.t1 | XP_013467079.1 | 74.8 | 860 | 181 | 6 | 1 | 845 | 1 | 839 | 0.00E+00 | 1181 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054416.t1 | A0A072VGE3 | 74.8 | 860 | 181 | 6 | 1 | 845 | 1 | 839 | 0.0e+00 | 1181.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050738 | MS.gene054416 | 0.840169 | 1.02E-57 | -1.69E-46 |
| MS.gene054416 | MS.gene072542 | 0.809661 | 1.69E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene054416 | MS.gene29352 | PPI |
| MS.gene054416 | MS.gene072484 | PPI |
| MS.gene054416 | MS.gene78586 | PPI |
| MS.gene054416 | MS.gene072485 | PPI |
| MS.gene054416 | MS.gene78585 | PPI |
| MS.gene67159 | MS.gene054416 | PPI |
| MS.gene063225 | MS.gene054416 | PPI |
| MS.gene054416 | MS.gene050889 | PPI |
| MS.gene054416 | MS.gene78584 | PPI |
| MS.gene050738 | MS.gene054416 | PPI |
| MS.gene65461 | MS.gene054416 | PPI |
| MS.gene054416 | MS.gene050892 | PPI |
| MS.gene050893 | MS.gene054416 | PPI |
| MS.gene054416 | MS.gene050942 | PPI |
| MS.gene78585 | MS.gene054416 | PPI |
| MS.gene054416 | MS.gene072482 | PPI |
| MS.gene054416 | MS.gene072542 | PPI |
| MS.gene78587 | MS.gene054416 | PPI |
| MS.gene29351 | MS.gene054416 | PPI |
| MS.gene054416 | MS.gene29350 | PPI |
| MS.gene054416 | MS.gene050891 | PPI |
| MS.gene054416 | MS.gene78588 | PPI |
| MS.gene053360 | MS.gene054416 | PPI |
| MS.gene054416 | MS.gene072483 | PPI |
| MS.gene072481 | MS.gene054416 | PPI |
| MS.gene054416 | MS.gene29351 | PPI |
| MS.gene054416 | MS.gene050890 | PPI |
| MS.gene054416 | MS.gene053360 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054416.t1 | MTR_1g041895 | 80.828 | 845 | 140 | 6 | 16 | 845 | 2 | 839 | 0.0 | 1333 |
| MS.gene054416.t1 | MTR_7g113220 | 69.544 | 811 | 175 | 11 | 16 | 813 | 2 | 753 | 0.0 | 1031 |
| MS.gene054416.t1 | MTR_7g113280 | 67.250 | 800 | 195 | 8 | 16 | 797 | 2 | 752 | 0.0 | 1025 |
| MS.gene054416.t1 | MTR_7g113270 | 68.627 | 816 | 178 | 12 | 16 | 813 | 2 | 757 | 0.0 | 1016 |
| MS.gene054416.t1 | MTR_7g112390 | 76.957 | 460 | 38 | 2 | 145 | 604 | 1 | 392 | 0.0 | 672 |
| MS.gene054416.t1 | MTR_7g112390 | 85.259 | 251 | 13 | 1 | 593 | 843 | 478 | 704 | 3.46e-131 | 409 |
| MS.gene054416.t1 | MTR_7g113250 | 73.043 | 460 | 90 | 4 | 27 | 479 | 1 | 433 | 0.0 | 671 |
| MS.gene054416.t1 | MTR_7g113250 | 62.814 | 199 | 63 | 2 | 644 | 832 | 434 | 631 | 4.06e-68 | 238 |
| MS.gene054416.t1 | MTR_7g108470 | 41.826 | 471 | 225 | 7 | 18 | 440 | 6 | 475 | 5.84e-107 | 351 |
| MS.gene054416.t1 | MTR_4g119630 | 45.504 | 367 | 175 | 6 | 36 | 386 | 40 | 397 | 1.05e-94 | 305 |
| MS.gene054416.t1 | MTR_3g049350 | 79.290 | 169 | 28 | 2 | 318 | 479 | 3 | 171 | 1.75e-82 | 266 |
| MS.gene054416.t1 | MTR_3g049350 | 55.844 | 77 | 33 | 1 | 644 | 720 | 172 | 247 | 6.40e-17 | 82.0 |
| MS.gene054416.t1 | MTR_2g436970 | 35.045 | 331 | 175 | 8 | 40 | 369 | 17 | 308 | 3.73e-58 | 206 |
| MS.gene054416.t1 | MTR_7g113290 | 72.174 | 115 | 31 | 1 | 583 | 697 | 13 | 126 | 2.39e-42 | 157 |
| MS.gene054416.t1 | MTR_5g007800 | 49.315 | 73 | 26 | 2 | 751 | 823 | 12 | 73 | 1.81e-12 | 63.9 |
| MS.gene054416.t1 | MTR_4g119640 | 33.621 | 116 | 66 | 3 | 45 | 158 | 27 | 133 | 2.00e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054416.t1 | AT1G09040 | 43.820 | 445 | 198 | 7 | 37 | 436 | 35 | 472 | 1.04e-108 | 355 |
| MS.gene054416.t1 | AT1G09050 | 41.372 | 481 | 228 | 8 | 1 | 436 | 1 | 472 | 6.38e-106 | 348 |
| MS.gene054416.t1 | AT1G09050 | 41.372 | 481 | 228 | 8 | 1 | 436 | 1 | 472 | 6.38e-106 | 348 |
| MS.gene054416.t1 | AT2G47820 | 39.468 | 489 | 235 | 11 | 10 | 447 | 11 | 489 | 5.77e-101 | 332 |
| MS.gene054416.t1 | AT2G47820 | 39.468 | 489 | 235 | 11 | 10 | 447 | 11 | 489 | 5.77e-101 | 332 |
| MS.gene054416.t1 | AT1G55050 | 42.601 | 446 | 202 | 10 | 40 | 447 | 27 | 456 | 1.55e-97 | 325 |
| MS.gene054416.t1 | AT1G55050 | 42.601 | 446 | 202 | 10 | 40 | 447 | 27 | 456 | 1.55e-97 | 325 |
Find 169 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCATTTGATCCCCTTTC+TGG | 0.079763 | 7.4:-4307486 | None:intergenic |
| TGTTACCTCCAAAGATTATT+TGG | 0.174265 | 7.4:+4307302 | MS.gene054416:CDS |
| CTACTTGGTTTGTTTATGTT+TGG | 0.213716 | 7.4:+4306401 | MS.gene054416:CDS |
| TGACTCTGCTGATTACTAAT+TGG | 0.231314 | 7.4:-4308320 | None:intergenic |
| CCCTTGTGATGTTGGTTCTT+TGG | 0.241349 | 7.4:+4308580 | MS.gene054416:CDS |
| TCTTCGAGCACGAGAATATT+AGG | 0.253225 | 7.4:-4307429 | None:intergenic |
| CCAAATGTAATGATCTCTTC+TGG | 0.254135 | 7.4:+4307214 | MS.gene054416:CDS |
| GTTTCTAGTGCTCTGTCTCC+TGG | 0.283035 | 7.4:-4308624 | None:intergenic |
| TACTTGGTTTGTTTATGTTT+GGG | 0.295382 | 7.4:+4306402 | MS.gene054416:CDS |
| ACTTTACTAACTGAATTTAC+AGG | 0.296069 | 7.4:-4307651 | None:intergenic |
| ATCGCAAGATACTTTGTTAC+AGG | 0.312695 | 7.4:+4306640 | MS.gene054416:CDS |
| AGCTGTTTGGCCCCGCTTAT+TGG | 0.313727 | 7.4:+4307239 | MS.gene054416:CDS |
| CAATCACTTTCCTTTGCAAT+TGG | 0.316197 | 7.4:+4306254 | MS.gene054416:CDS |
| ATCTCTTCTGGGAAGCTGTT+TGG | 0.318789 | 7.4:+4307226 | MS.gene054416:CDS |
| CTAATTGGATCACAAACATT+TGG | 0.325977 | 7.4:-4308305 | None:intergenic |
| TGGTACTCATGCCCTATTCT+AGG | 0.331873 | 7.4:-4306149 | None:intergenic |
| GCGGAAAGCCATCTGATCTA+AGG | 0.340846 | 7.4:+4307613 | MS.gene054416:CDS |
| ATGCAGTTGATCCTATTAAA+AGG | 0.341204 | 7.4:+4308165 | MS.gene054416:CDS |
| AATCTTTGACCGGAGGATTT+CGG | 0.347413 | 7.4:+4307181 | MS.gene054416:CDS |
| CATGTATTGATTACCGTCAT+TGG | 0.349047 | 7.4:-4308405 | None:intergenic |
| TGCATCATTGAGAATTCTTC+AGG | 0.352473 | 7.4:+4308224 | MS.gene054416:CDS |
| TGCAAAGCTTTGTCTTCTCT+TGG | 0.354435 | 7.4:+4307141 | MS.gene054416:CDS |
| TGTCTCCTGGGATTTATATC+AGG | 0.358743 | 7.4:-4308611 | None:intergenic |
| TGAAAATAGCAAAATGATAA+AGG | 0.363910 | 7.4:+4308499 | MS.gene054416:CDS |
| TGAAAGGATCTTTGTGGGTC+TGG | 0.367041 | 7.4:-4308727 | None:intergenic |
| TGAGAATTCTTCAGGAGGTC+TGG | 0.367894 | 7.4:+4308232 | MS.gene054416:CDS |
| TAATTGGATCACAAACATTT+GGG | 0.375096 | 7.4:-4308304 | None:intergenic |
| CATGGTTATTGATACCAGTT+TGG | 0.378866 | 7.4:+4307584 | MS.gene054416:CDS |
| TAAAGATCATATAAAATTCA+TGG | 0.383096 | 7.4:+4307566 | MS.gene054416:CDS |
| CAAGAAGAAAAGCATTTGAT+TGG | 0.384292 | 7.4:+4308830 | MS.gene054416:CDS |
| CCAGAAGAGATCATTACATT+TGG | 0.384833 | 7.4:-4307214 | None:intergenic |
| ATCTTAGCTTCCACCATCAT+TGG | 0.387710 | 7.4:-4307918 | None:intergenic |
| TTTATTGTAGGTAGCAGATC+GGG | 0.388475 | 7.4:-4307547 | None:intergenic |
| TCTTCTTTGAAGTCTATTGT+TGG | 0.388479 | 7.4:+4307009 | MS.gene054416:CDS |
| ACTAGGTTTGGTGTCGAACC+TGG | 0.389475 | 7.4:+4307084 | MS.gene054416:CDS |
| TTGATTTGAGTCCTAGAATA+GGG | 0.416775 | 7.4:+4306138 | MS.gene054416:CDS |
| AAGAGAGACCTTACTAGGTT+TGG | 0.424779 | 7.4:+4307072 | MS.gene054416:CDS |
| TGCCGCAAGGCTCGAACAAA+AGG | 0.426599 | 7.4:+4308755 | MS.gene054416:CDS |
| CTTGATTTGAGTCCTAGAAT+AGG | 0.429697 | 7.4:+4306137 | MS.gene054416:CDS |
| TTGAAGTCTATTGTTGGACT+TGG | 0.435074 | 7.4:+4307015 | MS.gene054416:CDS |
| AGACATCAATTCATGTCAAT+TGG | 0.437759 | 7.4:+4306328 | MS.gene054416:CDS |
| TTTCTAGTGCTCTGTCTCCT+GGG | 0.444972 | 7.4:-4308623 | None:intergenic |
| CCAACATCACAAGGGATTCT+CGG | 0.446123 | 7.4:-4308572 | None:intergenic |
| CTTGTGGAAGCAGTAGGTAT+TGG | 0.446453 | 7.4:+4307042 | MS.gene054416:CDS |
| GTAACATAGCCTCGATACTT+TGG | 0.448775 | 7.4:-4307285 | None:intergenic |
| CTGGCAGATTGAGTAGCTCC+TGG | 0.448809 | 7.4:+4306354 | MS.gene054416:CDS |
| TTCAATTCCCTTAGATCAGA+TGG | 0.449915 | 7.4:-4307621 | None:intergenic |
| CAAATGTAATGATCTCTTCT+GGG | 0.451033 | 7.4:+4307215 | MS.gene054416:CDS |
| GAAAAGCATTTGATTGGAGA+TGG | 0.462252 | 7.4:+4308836 | MS.gene054416:CDS |
| CAGATAAACTAGGAATTTCT+CGG | 0.462819 | 7.4:+4308258 | MS.gene054416:CDS |
| ATCGTAGATGGTCGGAGTGC+AGG | 0.464883 | 7.4:+4306519 | MS.gene054416:CDS |
| CCGAGAATCCCTTGTGATGT+TGG | 0.466160 | 7.4:+4308572 | MS.gene054416:CDS |
| CTTTCCGCCATGTACCAAAC+TGG | 0.468470 | 7.4:-4307598 | None:intergenic |
| AGGAGAAGAGAGACCTTACT+AGG | 0.469113 | 7.4:+4307067 | MS.gene054416:CDS |
| AATGAAGAGTGTGGATATCA+TGG | 0.469832 | 7.4:+4306305 | MS.gene054416:CDS |
| TGGTCTTCATAGAGAAAGTA+AGG | 0.471893 | 7.4:+4307872 | MS.gene054416:CDS |
| TTTCAGTTTCAACATGCCTC+AGG | 0.472552 | 7.4:+4308463 | MS.gene054416:CDS |
| CCCGCTTATTGGCAAGAGGT+TGG | 0.473043 | 7.4:+4307250 | MS.gene054416:CDS |
| GAGAATTCTTCAGGAGGTCT+GGG | 0.474898 | 7.4:+4308233 | MS.gene054416:CDS |
| GACAAAAGTTCTTGTTGCCT+CGG | 0.476314 | 7.4:-4306590 | None:intergenic |
| TCATTATGTATCAATGTGAC+TGG | 0.481414 | 7.4:-4306287 | None:intergenic |
| CAGGAGCTACTCAATCTGCC+AGG | 0.486972 | 7.4:-4306353 | None:intergenic |
| CAATGAGAAAGAACCAGAAA+GGG | 0.490089 | 7.4:+4307473 | MS.gene054416:CDS |
| AAGGATTGAAAGGATCTTTG+TGG | 0.490321 | 7.4:-4308733 | None:intergenic |
| ATCATTATCATTCTCTTCAA+AGG | 0.492444 | 7.4:-4306042 | None:intergenic |
| TGTTGGACTTGGTGTTCTTG+TGG | 0.492469 | 7.4:+4307026 | MS.gene054416:CDS |
| CCAACCTCTTGCCAATAAGC+GGG | 0.493049 | 7.4:-4307250 | None:intergenic |
| CTGCTCTGATTTCTTAAGCA+TGG | 0.494102 | 7.4:-4306186 | None:intergenic |
| TCAGGTGTCTAAGTCATTTG+TGG | 0.494888 | 7.4:+4306957 | MS.gene054416:intron |
| TAGAATAGGGCATGAGTACC+AGG | 0.495777 | 7.4:+4306151 | MS.gene054416:CDS |
| ATTGATACCAGTTTGGTACA+TGG | 0.498438 | 7.4:+4307591 | MS.gene054416:CDS |
| GCCAACCTCTTGCCAATAAG+CGG | 0.499224 | 7.4:-4307251 | None:intergenic |
| ATATGTCTAAAAGCATTAAA+CGG | 0.500870 | 7.4:+4307727 | MS.gene054416:CDS |
| TTTGCTCAGCCGAAATCCTC+CGG | 0.501641 | 7.4:-4307190 | None:intergenic |
| TGGATCACAAACATTTGGGT+TGG | 0.502365 | 7.4:-4308300 | None:intergenic |
| TTGTGTATCCGCATCACTCC+AGG | 0.502846 | 7.4:-4306372 | None:intergenic |
| GGAGCATCTTCTGATTCAAC+GGG | 0.506307 | 7.4:-4307837 | None:intergenic |
| GTTCGACACCAAACCTAGTA+AGG | 0.507637 | 7.4:-4307080 | None:intergenic |
| TGCACAGCTTCTGAATCAGC+AGG | 0.507765 | 7.4:-4306227 | None:intergenic |
| AGGATTGAAAGGATCTTTGT+GGG | 0.514560 | 7.4:-4308732 | None:intergenic |
| ATCGTCATTGTTCAGATCAC+GGG | 0.522866 | 7.4:+4308792 | MS.gene054416:CDS |
| ACCGTTGACAGTTAGAGCAT+TGG | 0.523133 | 7.4:+4308649 | MS.gene054416:CDS |
| GCCCCACGACTGTTCTTCCC+AGG | 0.523209 | 7.4:-4307102 | None:intergenic |
| CTTGAAAACTTCTCAACACC+AGG | 0.523291 | 7.4:-4307336 | None:intergenic |
| CTTTATTGTAGGTAGCAGAT+CGG | 0.523420 | 7.4:-4307548 | None:intergenic |
| GCAATGAGAAAGAACCAGAA+AGG | 0.525587 | 7.4:+4307472 | MS.gene054416:CDS |
| AAACTGATGGATATCGTAGA+TGG | 0.528556 | 7.4:+4306507 | MS.gene054416:CDS |
| TCAAGGAGAAAACTTGTGAA+AGG | 0.529448 | 7.4:+4307354 | MS.gene054416:CDS |
| ACCTGATCTTACTCTCCGAT+TGG | 0.529963 | 7.4:-4308132 | None:intergenic |
| AGCAGACAGAAGCTTGGAAG+AGG | 0.533341 | 7.4:+4308361 | MS.gene054416:CDS |
| TTCTTCAGCAGACAGAAGCT+TGG | 0.535359 | 7.4:+4308355 | MS.gene054416:CDS |
| TCACGAAGCATCAGTCCAAT+CGG | 0.535452 | 7.4:+4308117 | MS.gene054416:CDS |
| AGACAGAAGCTTGGAAGAGG+AGG | 0.535920 | 7.4:+4308364 | MS.gene054416:CDS |
| TTCTTAGAGAACAAATCGAT+GGG | 0.539496 | 7.4:+4306449 | MS.gene054416:CDS |
| CTCGAAGAAGAAGCTAAAGT+TGG | 0.542576 | 7.4:+4307444 | MS.gene054416:CDS |
| TCTGATTTCTTAAGCATGGA+AGG | 0.545252 | 7.4:-4306182 | None:intergenic |
| CTATTCTAGGACTCAAATCA+AGG | 0.545701 | 7.4:-4306136 | None:intergenic |
| GGTGTTCTTGTGGAAGCAGT+AGG | 0.546113 | 7.4:+4307036 | MS.gene054416:CDS |
| TGCCACTCAGGAAGTAGTTG+AGG | 0.546342 | 7.4:+4308544 | MS.gene054416:CDS |
| TCCTTTCAATCCTTGCCGCA+AGG | 0.548859 | 7.4:+4308742 | MS.gene054416:CDS |
| TTTGTTCGAGCCTTGCGGCA+AGG | 0.549687 | 7.4:-4308752 | None:intergenic |
| GCCTTGCGGCAAGGATTGAA+AGG | 0.549774 | 7.4:-4308743 | None:intergenic |
| AACTGATGATTCGCCAATGA+TGG | 0.550833 | 7.4:+4307905 | MS.gene054416:CDS |
| AGGAGCATCTTCTGATTCAA+CGG | 0.551120 | 7.4:-4307838 | None:intergenic |
| TGTGGAGCATGCATCTCTTG+AGG | 0.552068 | 7.4:+4306070 | MS.gene054416:CDS |
| ATTCTTAGAGAACAAATCGA+TGG | 0.554399 | 7.4:+4306448 | MS.gene054416:CDS |
| CGGAAAGCCATCTGATCTAA+GGG | 0.558292 | 7.4:+4307614 | MS.gene054416:CDS |
| GGAAGCAGTAGGTATTGGTA+AGG | 0.559954 | 7.4:+4307047 | MS.gene054416:CDS |
| CATCGTCATTGTTCAGATCA+CGG | 0.563807 | 7.4:+4308791 | MS.gene054416:CDS |
| CTAGGTTTGGTGTCGAACCT+GGG | 0.565438 | 7.4:+4307085 | MS.gene054416:CDS |
| ATGTCTAACAGCTGCCACTC+AGG | 0.567399 | 7.4:+4308532 | MS.gene054416:CDS |
| AGGAGCTACTCAATCTGCCA+GGG | 0.569582 | 7.4:-4306352 | None:intergenic |
| TGTATCAATGTGACTGGGAT+GGG | 0.571927 | 7.4:-4306281 | None:intergenic |
| TGGCCCCGCTTATTGGCAAG+AGG | 0.575906 | 7.4:+4307246 | MS.gene054416:CDS |
| GAAATAATACAATCTTTGAC+CGG | 0.578933 | 7.4:+4307171 | MS.gene054416:CDS |
| ATGGAGCATGCGTCTCATGA+AGG | 0.580686 | 7.4:+4306113 | MS.gene054416:CDS |
| AATTCATGTCAATTGGCCCC+TGG | 0.580761 | 7.4:+4306335 | MS.gene054416:CDS |
| TCCAATCGGAGAGTAAGATC+AGG | 0.583223 | 7.4:+4308131 | MS.gene054416:CDS |
| TCCAATGCTCTAACTGTCAA+CGG | 0.583651 | 7.4:-4308650 | None:intergenic |
| TCCAAAGAACCAACATCACA+AGG | 0.587239 | 7.4:-4308581 | None:intergenic |
| AAAGTTGATGTAGATGCTGC+TGG | 0.592230 | 7.4:+4307669 | MS.gene054416:CDS |
| GATGCTCCTACTGCTACTAC+TGG | 0.592956 | 7.4:+4307852 | MS.gene054416:CDS |
| AGATACACCTCTGCGACTGT+TGG | 0.594249 | 7.4:-4307973 | None:intergenic |
| AGGTAGCAGATCGGGGCTTG+AGG | 0.598766 | 7.4:-4307539 | None:intergenic |
| TGAAGACCAGTAGTAGCAGT+AGG | 0.600187 | 7.4:-4307858 | None:intergenic |
| AAAGATTGTATTATTTCACT+CGG | 0.605641 | 7.4:-4307165 | None:intergenic |
| TGATGATTCGCCAATGATGG+TGG | 0.608648 | 7.4:+4307908 | MS.gene054416:CDS |
| TGATACTGATGCAAACAAGA+TGG | 0.608686 | 7.4:+4308037 | MS.gene054416:CDS |
| ATGTATCAATGTGACTGGGA+TGG | 0.609324 | 7.4:-4306282 | None:intergenic |
| AACCTGGGAAGAACAGTCGT+GGG | 0.612237 | 7.4:+4307100 | MS.gene054416:CDS |
| TCAGAATTCGATGGAACCTG+AGG | 0.615327 | 7.4:-4308479 | None:intergenic |
| TTTGCTCAAGACATCACTAA+CGG | 0.620063 | 7.4:-4307394 | None:intergenic |
| GAACCTGGGAAGAACAGTCG+TGG | 0.620087 | 7.4:+4307099 | MS.gene054416:CDS |
| TTGATGATAATCAAGTGAAG+AGG | 0.620879 | 7.4:+4308093 | MS.gene054416:CDS |
| TTGATACATAATGAAGAGTG+TGG | 0.621005 | 7.4:+4306296 | MS.gene054416:CDS |
| GAGAAAAGTAAACCATGGCA+AGG | 0.627561 | 7.4:+4307704 | MS.gene054416:CDS |
| GACAGCCTGATATAAATCCC+AGG | 0.628120 | 7.4:+4308606 | MS.gene054416:CDS |
| GAGATTGACTGATTGTGCCA+AGG | 0.628845 | 7.4:+4308190 | MS.gene054416:CDS |
| ATCATTGAGAATTCTTCAGG+AGG | 0.629495 | 7.4:+4308227 | MS.gene054416:CDS |
| TTATTGTAGGTAGCAGATCG+GGG | 0.634121 | 7.4:-4307546 | None:intergenic |
| TGAGTGGCAGCTGTTAGACA+TGG | 0.636795 | 7.4:-4308530 | None:intergenic |
| ATAATACAATCTTTGACCGG+AGG | 0.640323 | 7.4:+4307174 | MS.gene054416:CDS |
| GAAGACAAAGCTTTGCAATG+TGG | 0.642154 | 7.4:-4307135 | None:intergenic |
| GCATCTTCTGATTCAACGGG+CGG | 0.643453 | 7.4:-4307834 | None:intergenic |
| CAACCTCTTGCCAATAAGCG+GGG | 0.645022 | 7.4:-4307249 | None:intergenic |
| GATGGGTAAGCCAATTGCAA+AGG | 0.645390 | 7.4:-4306264 | None:intergenic |
| TGATGGATATCGTAGATGGT+CGG | 0.645738 | 7.4:+4306511 | MS.gene054416:CDS |
| CATTATGTATCAATGTGACT+GGG | 0.646100 | 7.4:-4306286 | None:intergenic |
| GTAGATGGTCGGAGTGCAGG+AGG | 0.647585 | 7.4:+4306522 | MS.gene054416:CDS |
| GAGTAGCTCCTGGAGTGATG+CGG | 0.647768 | 7.4:+4306364 | MS.gene054416:CDS |
| GCATGGAAGGAATTTCCACC+TGG | 0.654334 | 7.4:-4306169 | None:intergenic |
| GGTGTCTAAGTCATTTGTGG+AGG | 0.657517 | 7.4:+4306960 | MS.gene054416:intron |
| GGTCTGGGATCAGATAAACT+AGG | 0.658935 | 7.4:+4308248 | MS.gene054416:CDS |
| AATAAAACCAACAGTCGCAG+AGG | 0.660971 | 7.4:+4307966 | MS.gene054416:CDS |
| CGCAGAGGTGTATCTAACTG+TGG | 0.661071 | 7.4:+4307981 | MS.gene054416:CDS |
| CTTAGAGAACAAATCGATGG+GGG | 0.664727 | 7.4:+4306451 | MS.gene054416:CDS |
| GGAGCTACTCAATCTGCCAG+GGG | 0.669247 | 7.4:-4306351 | None:intergenic |
| CTCCTCAACTACTTCCTGAG+TGG | 0.669937 | 7.4:-4308546 | None:intergenic |
| CAGTTGATCCTATTAAAAGG+AGG | 0.674014 | 7.4:+4308168 | MS.gene054416:CDS |
| TCTTAGAGAACAAATCGATG+GGG | 0.679364 | 7.4:+4306450 | MS.gene054416:CDS |
| TTGATTATCATCAAACACAC+AGG | 0.682319 | 7.4:-4308084 | None:intergenic |
| CATACGAGAAAAGTAAACCA+TGG | 0.682455 | 7.4:+4307699 | MS.gene054416:CDS |
| AATGAGAAAGAACCAGAAAG+GGG | 0.690702 | 7.4:+4307474 | MS.gene054416:CDS |
| TCTGAGCAACCAAAGTATCG+AGG | 0.695852 | 7.4:+4307276 | MS.gene054416:CDS |
| GATACCAGTTTGGTACATGG+CGG | 0.696313 | 7.4:+4307594 | MS.gene054416:CDS |
| ACCTGGGAAGAACAGTCGTG+GGG | 0.700618 | 7.4:+4307101 | MS.gene054416:CDS |
| CCAAAGAACCAACATCACAA+GGG | 0.720186 | 7.4:-4308580 | None:intergenic |
| AATAGGGCATGAGTACCAGG+TGG | 0.731216 | 7.4:+4306154 | MS.gene054416:CDS |
| ACATCACAAGGGATTCTCGG+AGG | 0.749240 | 7.4:-4308569 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAGATCATATAAAATTCA+TGG | + | chr7.4:4307566-4307585 | MS.gene054416:CDS | 15.0% |
| !!! | TTTTATATGATCTTTATTGT+AGG | - | chr7.4:4307562-4307581 | None:intergenic | 15.0% |
| !! | AAAGATTGTATTATTTCACT+CGG | - | chr7.4:4307168-4307187 | None:intergenic | 20.0% |
| !! | AAGAAAAACCAAATAATCTT+TGG | - | chr7.4:4307313-4307332 | None:intergenic | 20.0% |
| !! | TGAAAATAGCAAAATGATAA+AGG | + | chr7.4:4308499-4308518 | MS.gene054416:CDS | 20.0% |
| !!! | ATATGTCTAAAAGCATTAAA+CGG | + | chr7.4:4307727-4307746 | MS.gene054416:CDS | 20.0% |
| !!! | GAATGATAATGATATTTTCA+TGG | + | chr7.4:4306094-4306113 | MS.gene054416:CDS | 20.0% |
| ! | AAAAACCAAATAATCTTTGG+AGG | - | chr7.4:4307310-4307329 | None:intergenic | 25.0% |
| ! | AATAGAGGTTCAAATAATCA+TGG | - | chr7.4:4306846-4306865 | None:intergenic | 25.0% |
| ! | ACTTTACTAACTGAATTTAC+AGG | - | chr7.4:4307654-4307673 | None:intergenic | 25.0% |
| ! | ATCATTATCATTCTCTTCAA+AGG | - | chr7.4:4306045-4306064 | None:intergenic | 25.0% |
| ! | CTTTGTGTATATTTATACTC+AGG | + | chr7.4:4306939-4306958 | MS.gene054416:intron | 25.0% |
| ! | GAAATAATACAATCTTTGAC+CGG | + | chr7.4:4307171-4307190 | MS.gene054416:CDS | 25.0% |
| ! | GTATAAATATACACAAAGTG+AGG | - | chr7.4:4306937-4306956 | None:intergenic | 25.0% |
| ! | TAATTGGATCACAAACATTT+GGG | - | chr7.4:4308307-4308326 | None:intergenic | 25.0% |
| !! | ATGTAATGAAAAAAAGGTAC+TGG | - | chr7.4:4306875-4306894 | None:intergenic | 25.0% |
| !! | GAAATACTCTCATTTTACTA+TGG | + | chr7.4:4306473-4306492 | MS.gene054416:CDS | 25.0% |
| !!! | ATCATATGCTTCTTTTTTAC+TGG | - | chr7.4:4308012-4308031 | None:intergenic | 25.0% |
| !!! | GAATGATAATGATGTTTTTG+TGG | + | chr7.4:4306052-4306071 | MS.gene054416:CDS | 25.0% |
| !!! | TACTTGGTTTGTTTATGTTT+GGG | + | chr7.4:4306402-4306421 | MS.gene054416:CDS | 25.0% |
| !!! | TATTTGGTTTTTCTTATTCC+TGG | + | chr7.4:4307318-4307337 | MS.gene054416:CDS | 25.0% |
| AGACATCAATTCATGTCAAT+TGG | + | chr7.4:4306328-4306347 | MS.gene054416:CDS | 30.0% | |
| ATGCAGTTGATCCTATTAAA+AGG | + | chr7.4:4308165-4308184 | MS.gene054416:CDS | 30.0% | |
| ATTCTTAGAGAACAAATCGA+TGG | + | chr7.4:4306448-4306467 | MS.gene054416:CDS | 30.0% | |
| CAAATGTAATGATCTCTTCT+GGG | + | chr7.4:4307215-4307234 | MS.gene054416:CDS | 30.0% | |
| CAATAAAAGGATAACTCACT+CGG | - | chr7.4:4306816-4306835 | None:intergenic | 30.0% | |
| CAGATAAACTAGGAATTTCT+CGG | + | chr7.4:4308258-4308277 | MS.gene054416:CDS | 30.0% | |
| CATTATGTATCAATGTGACT+GGG | - | chr7.4:4306289-4306308 | None:intergenic | 30.0% | |
| CTAATTGGATCACAAACATT+TGG | - | chr7.4:4308308-4308327 | None:intergenic | 30.0% | |
| GGTGTGATGTAATGAAAAAA+AGG | - | chr7.4:4306881-4306900 | None:intergenic | 30.0% | |
| TCATGGTACATCACAATAAA+AGG | - | chr7.4:4306829-4306848 | None:intergenic | 30.0% | |
| TCATTATGTATCAATGTGAC+TGG | - | chr7.4:4306290-4306309 | None:intergenic | 30.0% | |
| TGTTACCTCCAAAGATTATT+TGG | + | chr7.4:4307302-4307321 | MS.gene054416:CDS | 30.0% | |
| TTCTTAGAGAACAAATCGAT+GGG | + | chr7.4:4306449-4306468 | MS.gene054416:CDS | 30.0% | |
| TTGATACATAATGAAGAGTG+TGG | + | chr7.4:4306296-4306315 | MS.gene054416:CDS | 30.0% | |
| TTGATTATCATCAAACACAC+AGG | - | chr7.4:4308087-4308106 | None:intergenic | 30.0% | |
| ! | GATACACAAAGTTTTCTACT+TGG | + | chr7.4:4306386-4306405 | MS.gene054416:CDS | 30.0% |
| ! | TTGATGATAATCAAGTGAAG+AGG | + | chr7.4:4308093-4308112 | MS.gene054416:CDS | 30.0% |
| ! | TTGATTTGAGTCCTAGAATA+GGG | + | chr7.4:4306138-4306157 | MS.gene054416:CDS | 30.0% |
| ! | TTTTCTGTCAGAAAGTCTAT+TGG | - | chr7.4:4307781-4307800 | None:intergenic | 30.0% |
| !! | ATGAAAAAAAGGTACTGGTA+TGG | - | chr7.4:4306870-4306889 | None:intergenic | 30.0% |
| !! | CAAGAAGAAAAGCATTTGAT+TGG | + | chr7.4:4308830-4308849 | MS.gene054416:CDS | 30.0% |
| !! | CTACTTGGTTTGTTTATGTT+TGG | + | chr7.4:4306401-4306420 | MS.gene054416:CDS | 30.0% |
| !! | GAAAAAAGCATTTCCAATGA+CGG | + | chr7.4:4308392-4308411 | MS.gene054416:CDS | 30.0% |
| !! | TCTTCTTTGAAGTCTATTGT+TGG | + | chr7.4:4307009-4307028 | MS.gene054416:CDS | 30.0% |
| !! | TGAAAAAAAGGTACTGGTAT+GGG | - | chr7.4:4306869-4306888 | None:intergenic | 30.0% |
| !!! | TTGCTATTTTCAGAATTCGA+TGG | - | chr7.4:4308491-4308510 | None:intergenic | 30.0% |
| AAACATGAGATGAGATGAGA+TGG | - | chr7.4:4306678-4306697 | None:intergenic | 35.0% | |
| AAGGATTGAAAGGATCTTTG+TGG | - | chr7.4:4308736-4308755 | None:intergenic | 35.0% | |
| AATGAGAAAGAACCAGAAAG+GGG | + | chr7.4:4307474-4307493 | MS.gene054416:CDS | 35.0% | |
| AGGATTGAAAGGATCTTTGT+GGG | - | chr7.4:4308735-4308754 | None:intergenic | 35.0% | |
| ATAATACAATCTTTGACCGG+AGG | + | chr7.4:4307174-4307193 | MS.gene054416:CDS | 35.0% | |
| ATCATTGAGAATTCTTCAGG+AGG | + | chr7.4:4308227-4308246 | MS.gene054416:CDS | 35.0% | |
| ATCGCAAGATACTTTGTTAC+AGG | + | chr7.4:4306640-4306659 | MS.gene054416:CDS | 35.0% | |
| ATTGATACCAGTTTGGTACA+TGG | + | chr7.4:4307591-4307610 | MS.gene054416:CDS | 35.0% | |
| CAATCACTTTCCTTTGCAAT+TGG | + | chr7.4:4306254-4306273 | MS.gene054416:CDS | 35.0% | |
| CAATGAGAAAGAACCAGAAA+GGG | + | chr7.4:4307473-4307492 | MS.gene054416:CDS | 35.0% | |
| CAGTTGATCCTATTAAAAGG+AGG | + | chr7.4:4308168-4308187 | MS.gene054416:CDS | 35.0% | |
| CATACGAGAAAAGTAAACCA+TGG | + | chr7.4:4307699-4307718 | MS.gene054416:CDS | 35.0% | |
| CATGGTTATTGATACCAGTT+TGG | + | chr7.4:4307584-4307603 | MS.gene054416:CDS | 35.0% | |
| CCAAATGTAATGATCTCTTC+TGG | + | chr7.4:4307214-4307233 | MS.gene054416:CDS | 35.0% | |
| CCAGAAGAGATCATTACATT+TGG | - | chr7.4:4307217-4307236 | None:intergenic | 35.0% | |
| CTTTATTGTAGGTAGCAGAT+CGG | - | chr7.4:4307551-4307570 | None:intergenic | 35.0% | |
| TCAAGGAGAAAACTTGTGAA+AGG | + | chr7.4:4307354-4307373 | MS.gene054416:CDS | 35.0% | |
| TCTGATTTCTTAAGCATGGA+AGG | - | chr7.4:4306185-4306204 | None:intergenic | 35.0% | |
| TCTTAGAGAACAAATCGATG+GGG | + | chr7.4:4306450-4306469 | MS.gene054416:CDS | 35.0% | |
| TGATACTGATGCAAACAAGA+TGG | + | chr7.4:4308037-4308056 | MS.gene054416:CDS | 35.0% | |
| TGCATCATTGAGAATTCTTC+AGG | + | chr7.4:4308224-4308243 | MS.gene054416:CDS | 35.0% | |
| TGGTCTTCATAGAGAAAGTA+AGG | + | chr7.4:4307872-4307891 | MS.gene054416:CDS | 35.0% | |
| TTCAATTCCCTTAGATCAGA+TGG | - | chr7.4:4307624-4307643 | None:intergenic | 35.0% | |
| TTGAAGTCTATTGTTGGACT+TGG | + | chr7.4:4307015-4307034 | MS.gene054416:CDS | 35.0% | |
| TTTATTGTAGGTAGCAGATC+GGG | - | chr7.4:4307550-4307569 | None:intergenic | 35.0% | |
| TTTGCTCAAGACATCACTAA+CGG | - | chr7.4:4307397-4307416 | None:intergenic | 35.0% | |
| ! | AAACTGATGGATATCGTAGA+TGG | + | chr7.4:4306507-4306526 | MS.gene054416:CDS | 35.0% |
| ! | AATGAAGAGTGTGGATATCA+TGG | + | chr7.4:4306305-4306324 | MS.gene054416:CDS | 35.0% |
| ! | ACAGGACAGAAACTTTTTAC+TGG | + | chr7.4:4306566-4306585 | MS.gene054416:CDS | 35.0% |
| ! | CTTGATTTGAGTCCTAGAAT+AGG | + | chr7.4:4306137-4306156 | MS.gene054416:CDS | 35.0% |
| ! | GGAGAGTTTTACAAAACTGA+TGG | + | chr7.4:4306494-4306513 | MS.gene054416:CDS | 35.0% |
| ! | GTCAATCTCCTCCTTTTAAT+AGG | - | chr7.4:4308179-4308198 | None:intergenic | 35.0% |
| ! | TGACTCTGCTGATTACTAAT+TGG | - | chr7.4:4308323-4308342 | None:intergenic | 35.0% |
| ! | TTTTAGACATATCCTTGCCA+TGG | - | chr7.4:4307719-4307738 | None:intergenic | 35.0% |
| !! | CATGTATTGATTACCGTCAT+TGG | - | chr7.4:4308408-4308427 | None:intergenic | 35.0% |
| !! | CTATTCTAGGACTCAAATCA+AGG | - | chr7.4:4306139-4306158 | None:intergenic | 35.0% |
| !! | GAAAAGCATTTGATTGGAGA+TGG | + | chr7.4:4308836-4308855 | MS.gene054416:CDS | 35.0% |
| AACTGATGATTCGCCAATGA+TGG | + | chr7.4:4307905-4307924 | MS.gene054416:CDS | 40.0% | |
| AAGAGAGACCTTACTAGGTT+TGG | + | chr7.4:4307072-4307091 | MS.gene054416:CDS | 40.0% | |
| AATAAAACCAACAGTCGCAG+AGG | + | chr7.4:4307966-4307985 | MS.gene054416:CDS | 40.0% | |
| AATCTTTGACCGGAGGATTT+CGG | + | chr7.4:4307181-4307200 | MS.gene054416:CDS | 40.0% | |
| ATCGTCATTGTTCAGATCAC+GGG | + | chr7.4:4308792-4308811 | MS.gene054416:CDS | 40.0% | |
| ATCTTAGCTTCCACCATCAT+TGG | - | chr7.4:4307921-4307940 | None:intergenic | 40.0% | |
| ATGTATCAATGTGACTGGGA+TGG | - | chr7.4:4306285-4306304 | None:intergenic | 40.0% | |
| CATCGTCATTGTTCAGATCA+CGG | + | chr7.4:4308791-4308810 | MS.gene054416:CDS | 40.0% | |
| CCAAAGAACCAACATCACAA+GGG | - | chr7.4:4308583-4308602 | None:intergenic | 40.0% | |
| CTCGAAGAAGAAGCTAAAGT+TGG | + | chr7.4:4307444-4307463 | MS.gene054416:CDS | 40.0% | |
| CTGCTCTGATTTCTTAAGCA+TGG | - | chr7.4:4306189-4306208 | None:intergenic | 40.0% | |
| CTTAGAGAACAAATCGATGG+GGG | + | chr7.4:4306451-4306470 | MS.gene054416:CDS | 40.0% | |
| CTTGAAAACTTCTCAACACC+AGG | - | chr7.4:4307339-4307358 | None:intergenic | 40.0% | |
| GAAGACAAAGCTTTGCAATG+TGG | - | chr7.4:4307138-4307157 | None:intergenic | 40.0% | |
| GACAAAAGTTCTTGTTGCCT+CGG | - | chr7.4:4306593-4306612 | None:intergenic | 40.0% | |
| GAGAAAAGTAAACCATGGCA+AGG | + | chr7.4:4307704-4307723 | MS.gene054416:CDS | 40.0% | |
| GCAATGAGAAAGAACCAGAA+AGG | + | chr7.4:4307472-4307491 | MS.gene054416:CDS | 40.0% | |
| GCTCTGTGCATTTGATACAA+TGG | + | chr7.4:4306773-4306792 | MS.gene054416:intron | 40.0% | |
| GTAACATAGCCTCGATACTT+TGG | - | chr7.4:4307288-4307307 | None:intergenic | 40.0% | |
| TCAGGTGTCTAAGTCATTTG+TGG | + | chr7.4:4306957-4306976 | MS.gene054416:intron | 40.0% | |
| TCCAAAGAACCAACATCACA+AGG | - | chr7.4:4308584-4308603 | None:intergenic | 40.0% | |
| TCCAATGCTCTAACTGTCAA+CGG | - | chr7.4:4308653-4308672 | None:intergenic | 40.0% | |
| TCTTCATTTGATCCCCTTTC+TGG | - | chr7.4:4307489-4307508 | None:intergenic | 40.0% | |
| TCTTCGAGCACGAGAATATT+AGG | - | chr7.4:4307432-4307451 | None:intergenic | 40.0% | |
| TGGATCACAAACATTTGGGT+TGG | - | chr7.4:4308303-4308322 | None:intergenic | 40.0% | |
| TGTATCAATGTGACTGGGAT+GGG | - | chr7.4:4306284-4306303 | None:intergenic | 40.0% | |
| TGTCTCCTGGGATTTATATC+AGG | - | chr7.4:4308614-4308633 | None:intergenic | 40.0% | |
| TTATTGTAGGTAGCAGATCG+GGG | - | chr7.4:4307549-4307568 | None:intergenic | 40.0% | |
| TTTCAGTTTCAACATGCCTC+AGG | + | chr7.4:4308463-4308482 | MS.gene054416:CDS | 40.0% | |
| ! | AGAAACTTTTTACTGGACCG+AGG | + | chr7.4:4306573-4306592 | MS.gene054416:CDS | 40.0% |
| ! | TGATGGATATCGTAGATGGT+CGG | + | chr7.4:4306511-4306530 | MS.gene054416:CDS | 40.0% |
| ! | TGCAAAGCTTTGTCTTCTCT+TGG | + | chr7.4:4307141-4307160 | MS.gene054416:CDS | 40.0% |
| !! | AAAGTTGATGTAGATGCTGC+TGG | + | chr7.4:4307669-4307688 | MS.gene054416:CDS | 40.0% |
| !! | AGGAGCATCTTCTGATTCAA+CGG | - | chr7.4:4307841-4307860 | None:intergenic | 40.0% |
| !! | CTGGTGTTGAGAAGTTTTCA+AGG | + | chr7.4:4307337-4307356 | MS.gene054416:CDS | 40.0% |
| !!! | CACAGGCGTGTTGATTTTTA+TGG | - | chr7.4:4308070-4308089 | None:intergenic | 40.0% |
| AATTCATGTCAATTGGCCCC+TGG | + | chr7.4:4306335-4306354 | MS.gene054416:CDS | 45.0% | |
| ACCGTTGACAGTTAGAGCAT+TGG | + | chr7.4:4308649-4308668 | MS.gene054416:CDS | 45.0% | |
| ACCTGATCTTACTCTCCGAT+TGG | - | chr7.4:4308135-4308154 | None:intergenic | 45.0% | |
| AGGAGAAGAGAGACCTTACT+AGG | + | chr7.4:4307067-4307086 | MS.gene054416:CDS | 45.0% | |
| CCAACATCACAAGGGATTCT+CGG | - | chr7.4:4308575-4308594 | None:intergenic | 45.0% | |
| CGGAAAGCCATCTGATCTAA+GGG | + | chr7.4:4307614-4307633 | MS.gene054416:CDS | 45.0% | |
| CTTGTGGAAGCAGTAGGTAT+TGG | + | chr7.4:4307042-4307061 | MS.gene054416:CDS | 45.0% | |
| GACAGCCTGATATAAATCCC+AGG | + | chr7.4:4308606-4308625 | MS.gene054416:CDS | 45.0% | |
| GAGAATTCTTCAGGAGGTCT+GGG | + | chr7.4:4308233-4308252 | MS.gene054416:CDS | 45.0% | |
| GAGATTGACTGATTGTGCCA+AGG | + | chr7.4:4308190-4308209 | MS.gene054416:CDS | 45.0% | |
| GATACCAGTTTGGTACATGG+CGG | + | chr7.4:4307594-4307613 | MS.gene054416:CDS | 45.0% | |
| GATGGGTAAGCCAATTGCAA+AGG | - | chr7.4:4306267-4306286 | None:intergenic | 45.0% | |
| GGTGTCTAAGTCATTTGTGG+AGG | + | chr7.4:4306960-4306979 | MS.gene054416:intron | 45.0% | |
| GTTCGACACCAAACCTAGTA+AGG | - | chr7.4:4307083-4307102 | None:intergenic | 45.0% | |
| TAGAATAGGGCATGAGTACC+AGG | + | chr7.4:4306151-4306170 | MS.gene054416:CDS | 45.0% | |
| TCAGAATTCGATGGAACCTG+AGG | - | chr7.4:4308482-4308501 | None:intergenic | 45.0% | |
| TCCAATCGGAGAGTAAGATC+AGG | + | chr7.4:4308131-4308150 | MS.gene054416:CDS | 45.0% | |
| TGAAAGGATCTTTGTGGGTC+TGG | - | chr7.4:4308730-4308749 | None:intergenic | 45.0% | |
| TGAAGACCAGTAGTAGCAGT+AGG | - | chr7.4:4307861-4307880 | None:intergenic | 45.0% | |
| TGAGAATTCTTCAGGAGGTC+TGG | + | chr7.4:4308232-4308251 | MS.gene054416:CDS | 45.0% | |
| TGATGATTCGCCAATGATGG+TGG | + | chr7.4:4307908-4307927 | MS.gene054416:CDS | 45.0% | |
| TGGTACTCATGCCCTATTCT+AGG | - | chr7.4:4306152-4306171 | None:intergenic | 45.0% | |
| TTCTTCAGCAGACAGAAGCT+TGG | + | chr7.4:4308355-4308374 | MS.gene054416:CDS | 45.0% | |
| ! | ATCTCTTCTGGGAAGCTGTT+TGG | + | chr7.4:4307226-4307245 | MS.gene054416:CDS | 45.0% |
| ! | GATGCAGCTTTTCTCTTCCT+TGG | - | chr7.4:4308210-4308229 | None:intergenic | 45.0% |
| ! | GGAGCATCTTCTGATTCAAC+GGG | - | chr7.4:4307840-4307859 | None:intergenic | 45.0% |
| ! | GGTCTGGGATCAGATAAACT+AGG | + | chr7.4:4308248-4308267 | MS.gene054416:CDS | 45.0% |
| ! | TCACGAAGCATCAGTCCAAT+CGG | + | chr7.4:4308117-4308136 | MS.gene054416:CDS | 45.0% |
| ! | TTTCTAGTGCTCTGTCTCCT+GGG | - | chr7.4:4308626-4308645 | None:intergenic | 45.0% |
| !! | AGGTACTGGTATGGGAATAG+AGG | - | chr7.4:4306861-4306880 | None:intergenic | 45.0% |
| !! | CCCTTGTGATGTTGGTTCTT+TGG | + | chr7.4:4308580-4308599 | MS.gene054416:CDS | 45.0% |
| !! | GGAAGCAGTAGGTATTGGTA+AGG | + | chr7.4:4307047-4307066 | MS.gene054416:CDS | 45.0% |
| !! | TCTGAGCAACCAAAGTATCG+AGG | + | chr7.4:4307276-4307295 | MS.gene054416:CDS | 45.0% |
| !! | TGTTGGACTTGGTGTTCTTG+TGG | + | chr7.4:4307026-4307045 | MS.gene054416:CDS | 45.0% |
| AAAGGGGGGAAACGTATGAC+AGG | + | chr7.4:4306548-4306567 | MS.gene054416:CDS | 50.0% | |
| AACCTGGGAAGAACAGTCGT+GGG | + | chr7.4:4307100-4307119 | MS.gene054416:CDS | 50.0% | |
| AATAGGGCATGAGTACCAGG+TGG | + | chr7.4:4306154-4306173 | MS.gene054416:CDS | 50.0% | |
| ACATCACAAGGGATTCTCGG+AGG | - | chr7.4:4308572-4308591 | None:intergenic | 50.0% | |
| AGACAGAAGCTTGGAAGAGG+AGG | + | chr7.4:4308364-4308383 | MS.gene054416:CDS | 50.0% | |
| AGATACACCTCTGCGACTGT+TGG | - | chr7.4:4307976-4307995 | None:intergenic | 50.0% | |
| AGCAGACAGAAGCTTGGAAG+AGG | + | chr7.4:4308361-4308380 | MS.gene054416:CDS | 50.0% | |
| AGGAGCTACTCAATCTGCCA+GGG | - | chr7.4:4306355-4306374 | None:intergenic | 50.0% | |
| AGTGCAGGAGGAAAAAAGGG+GGG | + | chr7.4:4306534-4306553 | MS.gene054416:CDS | 50.0% | |
| ATGGAGCATGCGTCTCATGA+AGG | + | chr7.4:4306113-4306132 | MS.gene054416:CDS | 50.0% | |
| ATGTCTAACAGCTGCCACTC+AGG | + | chr7.4:4308532-4308551 | MS.gene054416:CDS | 50.0% | |
| CAACCTCTTGCCAATAAGCG+GGG | - | chr7.4:4307252-4307271 | None:intergenic | 50.0% | |
| CCAACCTCTTGCCAATAAGC+GGG | - | chr7.4:4307253-4307272 | None:intergenic | 50.0% | |
| CCGAGAATCCCTTGTGATGT+TGG | + | chr7.4:4308572-4308591 | MS.gene054416:CDS | 50.0% | |
| CGGAGTGCAGGAGGAAAAAA+GGG | + | chr7.4:4306531-4306550 | MS.gene054416:CDS | 50.0% | |
| CTCCTCAACTACTTCCTGAG+TGG | - | chr7.4:4308549-4308568 | None:intergenic | 50.0% | |
| CTTTCCGCCATGTACCAAAC+TGG | - | chr7.4:4307601-4307620 | None:intergenic | 50.0% | |
| GACACACACACACACACAAC+TGG | - | chr7.4:4306902-4306921 | None:intergenic | 50.0% | |
| GAGTGCAGGAGGAAAAAAGG+GGG | + | chr7.4:4306533-4306552 | MS.gene054416:CDS | 50.0% | |
| GATGCTCCTACTGCTACTAC+TGG | + | chr7.4:4307852-4307871 | MS.gene054416:CDS | 50.0% | |
| GCATCTTCTGATTCAACGGG+CGG | - | chr7.4:4307837-4307856 | None:intergenic | 50.0% | |
| GCATGGAAGGAATTTCCACC+TGG | - | chr7.4:4306172-4306191 | None:intergenic | 50.0% | |
| GCCAACCTCTTGCCAATAAG+CGG | - | chr7.4:4307254-4307273 | None:intergenic | 50.0% | |
| GCGGAAAGCCATCTGATCTA+AGG | + | chr7.4:4307613-4307632 | MS.gene054416:CDS | 50.0% | |
| GGAGTGCAGGAGGAAAAAAG+GGG | + | chr7.4:4306532-4306551 | MS.gene054416:CDS | 50.0% | |
| GGTGTTCTTGTGGAAGCAGT+AGG | + | chr7.4:4307036-4307055 | MS.gene054416:CDS | 50.0% | |
| TCCTTTCAATCCTTGCCGCA+AGG | + | chr7.4:4308742-4308761 | MS.gene054416:CDS | 50.0% | |
| TCGGAGTGCAGGAGGAAAAA+AGG | + | chr7.4:4306530-4306549 | MS.gene054416:CDS | 50.0% | |
| TGAGTGGCAGCTGTTAGACA+TGG | - | chr7.4:4308533-4308552 | None:intergenic | 50.0% | |
| TGCACAGCTTCTGAATCAGC+AGG | - | chr7.4:4306230-4306249 | None:intergenic | 50.0% | |
| TGCCACTCAGGAAGTAGTTG+AGG | + | chr7.4:4308544-4308563 | MS.gene054416:CDS | 50.0% | |
| TGTGGAGCATGCATCTCTTG+AGG | + | chr7.4:4306070-4306089 | MS.gene054416:CDS | 50.0% | |
| TTGTGTATCCGCATCACTCC+AGG | - | chr7.4:4306375-4306394 | None:intergenic | 50.0% | |
| TTTGCTCAGCCGAAATCCTC+CGG | - | chr7.4:4307193-4307212 | None:intergenic | 50.0% | |
| ! | CGCAGAGGTGTATCTAACTG+TGG | + | chr7.4:4307981-4308000 | MS.gene054416:CDS | 50.0% |
| ! | TGCCTTTTGTTCGAGCCTTG+CGG | - | chr7.4:4308760-4308779 | None:intergenic | 50.0% |
| !! | ACTAGGTTTGGTGTCGAACC+TGG | + | chr7.4:4307084-4307103 | MS.gene054416:CDS | 50.0% |
| !! | CTAGGTTTGGTGTCGAACCT+GGG | + | chr7.4:4307085-4307104 | MS.gene054416:CDS | 50.0% |
| !! | GTTTCTAGTGCTCTGTCTCC+TGG | - | chr7.4:4308627-4308646 | None:intergenic | 50.0% |
| ACCTGGGAAGAACAGTCGTG+GGG | + | chr7.4:4307101-4307120 | MS.gene054416:CDS | 55.0% | |
| AGCTGTTTGGCCCCGCTTAT+TGG | + | chr7.4:4307239-4307258 | MS.gene054416:CDS | 55.0% | |
| ATCGTAGATGGTCGGAGTGC+AGG | + | chr7.4:4306519-4306538 | MS.gene054416:CDS | 55.0% | |
| CAGGAGCTACTCAATCTGCC+AGG | - | chr7.4:4306356-4306375 | None:intergenic | 55.0% | |
| CCCGCTTATTGGCAAGAGGT+TGG | + | chr7.4:4307250-4307269 | MS.gene054416:CDS | 55.0% | |
| CTGGCAGATTGAGTAGCTCC+TGG | + | chr7.4:4306354-4306373 | MS.gene054416:CDS | 55.0% | |
| GAACCTGGGAAGAACAGTCG+TGG | + | chr7.4:4307099-4307118 | MS.gene054416:CDS | 55.0% | |
| GAGTAGCTCCTGGAGTGATG+CGG | + | chr7.4:4306364-4306383 | MS.gene054416:CDS | 55.0% | |
| GCCTTGCGGCAAGGATTGAA+AGG | - | chr7.4:4308746-4308765 | None:intergenic | 55.0% | |
| GGAGCTACTCAATCTGCCAG+GGG | - | chr7.4:4306354-4306373 | None:intergenic | 55.0% | |
| TGCCGCAAGGCTCGAACAAA+AGG | + | chr7.4:4308755-4308774 | MS.gene054416:CDS | 55.0% | |
| TTTGTTCGAGCCTTGCGGCA+AGG | - | chr7.4:4308755-4308774 | None:intergenic | 55.0% | |
| AGGTAGCAGATCGGGGCTTG+AGG | - | chr7.4:4307542-4307561 | None:intergenic | 60.0% | |
| GTAGATGGTCGGAGTGCAGG+AGG | + | chr7.4:4306522-4306541 | MS.gene054416:CDS | 60.0% | |
| TGGCCCCGCTTATTGGCAAG+AGG | + | chr7.4:4307246-4307265 | MS.gene054416:CDS | 60.0% | |
| GCCCCACGACTGTTCTTCCC+AGG | - | chr7.4:4307105-4307124 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 4306035 | 4308871 | 4306035 | ID=MS.gene054416 |
| chr7.4 | mRNA | 4306035 | 4308871 | 4306035 | ID=MS.gene054416.t1;Parent=MS.gene054416 |
| chr7.4 | exon | 4306035 | 4306661 | 4306035 | ID=MS.gene054416.t1.exon1;Parent=MS.gene054416.t1 |
| chr7.4 | CDS | 4306035 | 4306661 | 4306035 | ID=cds.MS.gene054416.t1;Parent=MS.gene054416.t1 |
| chr7.4 | exon | 4306961 | 4308871 | 4306961 | ID=MS.gene054416.t1.exon2;Parent=MS.gene054416.t1 |
| chr7.4 | CDS | 4306961 | 4308871 | 4306961 | ID=cds.MS.gene054416.t1;Parent=MS.gene054416.t1 |
| Gene Sequence |
| Protein sequence |
