Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78585.t1 | XP_024626885.1 | 92.5 | 642 | 46 | 1 | 1 | 640 | 1 | 642 | 0.00E+00 | 1187.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78585.t1 | A2Q346 | 92.4 | 631 | 46 | 1 | 13 | 641 | 1 | 631 | 0.0e+00 | 1164.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene054416 | MS.gene78585 | PPI |
| MS.gene78585 | MS.gene050892 | PPI |
| MS.gene78585 | MS.gene050942 | PPI |
| MS.gene67159 | MS.gene78585 | PPI |
| MS.gene78585 | MS.gene78584 | PPI |
| MS.gene053360 | MS.gene78585 | PPI |
| MS.gene78585 | MS.gene072482 | PPI |
| MS.gene072481 | MS.gene78585 | PPI |
| MS.gene78585 | MS.gene29350 | PPI |
| MS.gene78585 | MS.gene050891 | PPI |
| MS.gene050738 | MS.gene78585 | PPI |
| MS.gene78585 | MS.gene054416 | PPI |
| MS.gene78585 | MS.gene072483 | PPI |
| MS.gene78585 | MS.gene072542 | PPI |
| MS.gene063225 | MS.gene78585 | PPI |
| MS.gene78585 | MS.gene29351 | PPI |
| MS.gene78585 | MS.gene29352 | PPI |
| MS.gene65461 | MS.gene78585 | PPI |
| MS.gene78585 | MS.gene78588 | PPI |
| MS.gene78587 | MS.gene78585 | PPI |
| MS.gene050893 | MS.gene78585 | PPI |
| MS.gene29351 | MS.gene78585 | PPI |
| MS.gene78585 | MS.gene050890 | PPI |
| MS.gene78585 | MS.gene050889 | PPI |
| MS.gene78585 | MS.gene053360 | PPI |
| MS.gene78585 | MS.gene072484 | PPI |
| MS.gene78585 | MS.gene78586 | PPI |
| MS.gene78585 | MS.gene072485 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78585.t1 | MTR_7g113250 | 92.393 | 631 | 46 | 1 | 13 | 641 | 1 | 631 | 0.0 | 1204 |
| MS.gene78585.t1 | MTR_1g041895 | 73.348 | 469 | 98 | 2 | 1 | 442 | 1 | 469 | 0.0 | 687 |
| MS.gene78585.t1 | MTR_1g041895 | 63.184 | 201 | 69 | 3 | 442 | 641 | 630 | 826 | 7.22e-65 | 229 |
| MS.gene78585.t1 | MTR_7g113280 | 74.775 | 444 | 110 | 2 | 1 | 442 | 1 | 444 | 0.0 | 672 |
| MS.gene78585.t1 | MTR_7g113280 | 62.874 | 167 | 60 | 1 | 442 | 606 | 586 | 752 | 1.69e-54 | 199 |
| MS.gene78585.t1 | MTR_7g113270 | 75.506 | 445 | 100 | 3 | 1 | 442 | 1 | 439 | 0.0 | 649 |
| MS.gene78585.t1 | MTR_7g113270 | 71.429 | 175 | 49 | 1 | 445 | 619 | 581 | 754 | 9.03e-74 | 252 |
| MS.gene78585.t1 | MTR_7g113220 | 74.550 | 444 | 100 | 3 | 1 | 441 | 1 | 434 | 0.0 | 644 |
| MS.gene78585.t1 | MTR_7g113220 | 71.429 | 175 | 49 | 1 | 445 | 619 | 577 | 750 | 1.13e-72 | 249 |
| MS.gene78585.t1 | MTR_3g049350 | 90.984 | 244 | 20 | 1 | 278 | 519 | 4 | 247 | 4.79e-154 | 445 |
| MS.gene78585.t1 | MTR_7g112390 | 62.426 | 338 | 55 | 3 | 105 | 442 | 1 | 266 | 3.59e-129 | 397 |
| MS.gene78585.t1 | MTR_7g112390 | 54.774 | 199 | 55 | 3 | 442 | 639 | 527 | 691 | 9.02e-51 | 187 |
| MS.gene78585.t1 | MTR_7g108470 | 46.765 | 340 | 171 | 4 | 68 | 400 | 140 | 476 | 1.73e-97 | 320 |
| MS.gene78585.t1 | MTR_4g119630 | 39.945 | 363 | 174 | 5 | 13 | 336 | 31 | 388 | 6.06e-79 | 258 |
| MS.gene78585.t1 | MTR_2g436970 | 40.196 | 306 | 166 | 11 | 26 | 328 | 17 | 308 | 3.26e-58 | 202 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78585.t1 | AT1G09040 | 47.977 | 346 | 167 | 4 | 60 | 395 | 130 | 472 | 3.99e-95 | 313 |
| MS.gene78585.t1 | AT1G09050 | 48.048 | 333 | 162 | 3 | 71 | 395 | 143 | 472 | 1.99e-91 | 303 |
| MS.gene78585.t1 | AT1G09050 | 48.048 | 333 | 162 | 3 | 71 | 395 | 143 | 472 | 1.99e-91 | 303 |
| MS.gene78585.t1 | AT2G47820 | 36.543 | 457 | 211 | 9 | 25 | 406 | 37 | 489 | 3.33e-84 | 281 |
| MS.gene78585.t1 | AT2G47820 | 36.543 | 457 | 211 | 9 | 25 | 406 | 37 | 489 | 3.33e-84 | 281 |
| MS.gene78585.t1 | AT1G55050 | 37.783 | 442 | 202 | 7 | 26 | 406 | 27 | 456 | 2.64e-81 | 275 |
| MS.gene78585.t1 | AT1G55050 | 37.783 | 442 | 202 | 7 | 26 | 406 | 27 | 456 | 2.64e-81 | 275 |
Find 119 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCAAGATTCTTTGTTAC+AGG | 0.220266 | 7.4:-3514507 | MS.gene78585:intron |
| CCAGAAGAGTTCATTACTTT+TGG | 0.252967 | 7.4:+3514019 | None:intergenic |
| ACTTTACTCACTGAATTAAT+AGG | 0.270204 | 7.4:+3513582 | None:intergenic |
| TCGGAGTGCATGAAGTTAAA+AGG | 0.272347 | 7.4:-3514617 | MS.gene78585:CDS |
| TGTTACCTCTGATGATTATC+TGG | 0.279909 | 7.4:-3513931 | MS.gene78585:CDS |
| CCAAAAGTAATGAACTCTTC+TGG | 0.298884 | 7.4:-3514019 | MS.gene78585:CDS |
| CATGGTTCCTGATGCCAGTT+TGG | 0.323236 | 7.4:-3513649 | MS.gene78585:CDS |
| TGCAAAACTTTGTCTTCTCT+TGG | 0.332450 | 7.4:-3514092 | MS.gene78585:CDS |
| GGAATTTCCGCCTGGTATTC+CGG | 0.334652 | 7.4:+3514908 | None:intergenic |
| ACGGAAAGCCATCTGATCTA+AGG | 0.340846 | 7.4:-3513620 | MS.gene78585:CDS |
| AATCTTTGACAGGAGGATTT+CGG | 0.353199 | 7.4:-3514052 | MS.gene78585:CDS |
| CGACTGCTTCTTCTTCTTTG+AGG | 0.363013 | 7.4:+3513790 | None:intergenic |
| AACTCTTCTGGGAAGCTGTT+TGG | 0.365864 | 7.4:-3514007 | MS.gene78585:CDS |
| AAAGGGAGAAAATGTATGAT+TGG | 0.366261 | 7.4:-3514599 | MS.gene78585:CDS |
| TTTCTATTGCTCTGTCTCCT+TGG | 0.376494 | 7.4:+3513060 | None:intergenic |
| TAAGATGATCTTGGTGTGTC+TGG | 0.380602 | 7.4:+3512956 | None:intergenic |
| CTTTCCGTCATGAGCCAAAC+TGG | 0.381154 | 7.4:+3513635 | None:intergenic |
| GAGATAGAAAAGGGATCAAA+TGG | 0.390082 | 7.4:-3513750 | MS.gene78585:CDS |
| TCTTTGAGGACGAGAATATT+CGG | 0.393562 | 7.4:+3513804 | None:intergenic |
| ACTAGGCTTGGTGTCGAACC+TGG | 0.397414 | 7.4:-3514146 | MS.gene78585:CDS |
| CAAAAGTAATGAACTCTTCT+GGG | 0.407006 | 7.4:-3514018 | MS.gene78585:CDS |
| TAAAGATCACATCAAATTCA+TGG | 0.412175 | 7.4:-3513667 | MS.gene78585:CDS |
| AAATCACGCTCCTATGCAAT+TGG | 0.415021 | 7.4:-3514815 | MS.gene78585:CDS |
| CTTCTCTGATTTCTTAATCA+AGG | 0.416004 | 7.4:+3514883 | None:intergenic |
| CATAGAACTCCTTGTGATGT+TGG | 0.427764 | 7.4:-3513111 | MS.gene78585:CDS |
| CCTCGTCATTGTTCAGATCA+TGG | 0.433562 | 7.4:-3512892 | MS.gene78585:CDS |
| TTCAATTCCCTTAGATCAGA+TGG | 0.449915 | 7.4:+3513612 | None:intergenic |
| AATCTGATGGATTTCGTAGA+TGG | 0.452593 | 7.4:-3514640 | MS.gene78585:CDS |
| ATGGATCATGCGTCTTATGA+AGG | 0.458560 | 7.4:-3514956 | MS.gene78585:CDS |
| TAGTTCATGTTGCCTTGGTC+CGG | 0.458759 | 7.4:+3514562 | None:intergenic |
| TCATGAGCCAAACTGGCATC+AGG | 0.465831 | 7.4:+3513642 | None:intergenic |
| AAAGATTCATTGAGAACAAA+GGG | 0.468914 | 7.4:-3514703 | MS.gene78585:CDS |
| AGCAAGGATTAAGATGATCT+TGG | 0.470445 | 7.4:+3512947 | None:intergenic |
| AAGGGAGAAAATGTATGATT+GGG | 0.474008 | 7.4:-3514598 | MS.gene78585:CDS |
| TCCAATGCTCTAACTGTCAA+TGG | 0.474242 | 7.4:+3513033 | None:intergenic |
| AATGGTGGAAGAAGCCAAGC+AGG | 0.474606 | 7.4:-3513193 | MS.gene78585:CDS |
| TCCTTGTGATGTTGGTTCGT+TGG | 0.475667 | 7.4:-3513103 | MS.gene78585:CDS |
| CTTGAAAACTTCTCAACGCC+GGG | 0.476901 | 7.4:+3513897 | None:intergenic |
| TCTTCTTTGAAGTTTACTGT+TGG | 0.479265 | 7.4:-3514221 | MS.gene78585:CDS |
| CTCGTCATTGTTCAGATCAT+GGG | 0.487535 | 7.4:-3512891 | MS.gene78585:CDS |
| TCTGATTTCTTAATCAAGGA+AGG | 0.491698 | 7.4:+3514887 | None:intergenic |
| CTTGAATCGAGTCCTCGAAT+AGG | 0.496723 | 7.4:-3514932 | MS.gene78585:CDS |
| CTATTCGAGGACTCGATTCA+AGG | 0.497921 | 7.4:+3514933 | None:intergenic |
| ACCATTGACAGTTAGAGCAT+TGG | 0.500083 | 7.4:-3513034 | MS.gene78585:CDS |
| GATATATTACAATCTTTGAC+AGG | 0.500185 | 7.4:-3514062 | MS.gene78585:CDS |
| ACAAGAAGGGAGACCTTACT+AGG | 0.500491 | 7.4:-3514163 | MS.gene78585:CDS |
| TGCTGCAAGGATTGTAAAAG+AGG | 0.501061 | 7.4:-3512928 | MS.gene78585:CDS |
| GTTCGACACCAAGCCTAGTA+AGG | 0.501648 | 7.4:+3514150 | None:intergenic |
| TGGTATTCCGGACCTATTCG+AGG | 0.509678 | 7.4:+3514920 | None:intergenic |
| AAGGGAGACCTTACTAGGCT+TGG | 0.511086 | 7.4:-3514158 | MS.gene78585:CDS |
| CGGAGTGCATGAAGTTAAAA+GGG | 0.513886 | 7.4:-3514616 | MS.gene78585:CDS |
| TTCATTGAGAACAAAGGGAT+GGG | 0.514764 | 7.4:-3514698 | MS.gene78585:CDS |
| TCGAATAGGTCCGGAATACC+AGG | 0.518214 | 7.4:-3514918 | MS.gene78585:CDS |
| CGCTAACTGAATCAAAGTAA+TGG | 0.519124 | 7.4:+3513853 | None:intergenic |
| AACGTCCGACTGTTCTTCCC+AGG | 0.523209 | 7.4:+3514128 | None:intergenic |
| CAATGAGGAAGAGATAGAAA+AGG | 0.526578 | 7.4:-3513760 | MS.gene78585:CDS |
| GATAATAGTTCATGTTGCCT+TGG | 0.527370 | 7.4:+3514557 | None:intergenic |
| ATCGAGTCCTCGAATAGGTC+CGG | 0.527806 | 7.4:-3514927 | MS.gene78585:CDS |
| AATGAGGAAGAGATAGAAAA+GGG | 0.530032 | 7.4:-3513759 | MS.gene78585:CDS |
| CTTGTGGAAGCAGTAGGGAT+TGG | 0.530676 | 7.4:-3514188 | MS.gene78585:CDS |
| ATCGCTCCATGTTTCTGACA+TGG | 0.531800 | 7.4:+3514787 | None:intergenic |
| CGCGCTTACTAGCAAGAGGA+TGG | 0.533696 | 7.4:-3513983 | MS.gene78585:CDS |
| TGTTGGAATAAACGTTCTTG+TGG | 0.541566 | 7.4:-3514204 | MS.gene78585:CDS |
| AAAAGATTCATTGAGAACAA+AGG | 0.544303 | 7.4:-3514704 | MS.gene78585:CDS |
| AGTAGGGATTGGTAACAAGA+AGG | 0.546680 | 7.4:-3514177 | MS.gene78585:CDS |
| CGGAAAGCCATCTGATCTAA+GGG | 0.547174 | 7.4:-3513619 | MS.gene78585:CDS |
| TCAGCAGGATTCATTTGAAG+TGG | 0.550741 | 7.4:+3514857 | None:intergenic |
| GTAGGGATTGGTAACAAGAA+GGG | 0.553888 | 7.4:-3514176 | MS.gene78585:CDS |
| AGAAGCCAAGCAGGGCGTAA+AGG | 0.554185 | 7.4:-3513184 | MS.gene78585:CDS |
| AACGTTCTTGTGGAAGCAGT+AGG | 0.554364 | 7.4:-3514194 | MS.gene78585:CDS |
| TGTCTCCTTGGATTTAGATG+AGG | 0.555499 | 7.4:+3513072 | None:intergenic |
| TCAGTTAGTCATCAGCAGAA+TGG | 0.556880 | 7.4:-3513390 | MS.gene78585:CDS |
| CCTTGAAAACTTCTCAACGC+CGG | 0.556901 | 7.4:+3513896 | None:intergenic |
| TCAAGGAAGGAATTTCCGCC+TGG | 0.558314 | 7.4:+3514900 | None:intergenic |
| AATTCTTGCATGTGCCAAAG+AGG | 0.562079 | 7.4:-3512996 | MS.gene78585:CDS |
| TCAAGGAGAAAACTAGTGAA+AGG | 0.565642 | 7.4:-3513879 | MS.gene78585:CDS |
| AACAGCCTCATCTAAATCCA+AGG | 0.573780 | 7.4:-3513077 | MS.gene78585:CDS |
| ACGTTCTTGTGGAAGCAGTA+GGG | 0.575109 | 7.4:-3514193 | MS.gene78585:CDS |
| AAAGTTGATGTAGATGCTGC+TGG | 0.579391 | 7.4:-3513564 | MS.gene78585:CDS |
| TGAATAACAGATGCGAGACA+TGG | 0.579514 | 7.4:+3513153 | None:intergenic |
| CAGCAGGATTCATTTGAAGT+GGG | 0.580828 | 7.4:+3514858 | None:intergenic |
| CAGATAAACTAGGATTCTCT+CGG | 0.581610 | 7.4:-3513452 | MS.gene78585:CDS |
| TCATTGAGAACAAAGGGATG+GGG | 0.582098 | 7.4:-3514697 | MS.gene78585:CDS |
| ATCGAGGCTTGAGGTAACAT+TGG | 0.583265 | 7.4:+3513703 | None:intergenic |
| AAGTAGAAAACATCTTGTAT+CGG | 0.587062 | 7.4:+3514763 | None:intergenic |
| CTAGGCTTGGTGTCGAACCT+GGG | 0.587602 | 7.4:-3514145 | MS.gene78585:CDS |
| TTTCAGCATTAACATACCGC+AGG | 0.591478 | 7.4:-3513250 | MS.gene78585:CDS |
| ACAAAGTTGACAGATAAACT+AGG | 0.593475 | 7.4:-3513462 | MS.gene78585:CDS |
| TCATCTTAATCCTTGCTGCA+AGG | 0.595537 | 7.4:-3512941 | MS.gene78585:CDS |
| TGGCCGCGCTTACTAGCAAG+AGG | 0.599467 | 7.4:-3513987 | MS.gene78585:CDS |
| TCGCTCCATGTTTCTGACAT+GGG | 0.605733 | 7.4:+3514788 | None:intergenic |
| ACATCACAAGGAGTTCTATG+AGG | 0.607726 | 7.4:+3513114 | None:intergenic |
| ATTCATTGAGAACAAAGGGA+TGG | 0.610344 | 7.4:-3514699 | MS.gene78585:CDS |
| GTTTACCCATGTCAGAAACA+TGG | 0.611769 | 7.4:-3514793 | MS.gene78585:CDS |
| CATGGGTAAACCAATTGCAT+AGG | 0.615617 | 7.4:+3514805 | None:intergenic |
| ATATTACAATCTTTGACAGG+AGG | 0.616161 | 7.4:-3514059 | MS.gene78585:CDS |
| TGATGGATTTCGTAGATGGT+CGG | 0.616885 | 7.4:-3514636 | MS.gene78585:CDS |
| TGAGATTCTTCAGATACATG+TGG | 0.619350 | 7.4:+3514524 | None:intergenic |
| GTTTCTAAGTCATACGTGGA+AGG | 0.621769 | 7.4:-3514269 | MS.gene78585:CDS |
| CATTGAGAACAAAGGGATGG+GGG | 0.623590 | 7.4:-3514696 | MS.gene78585:CDS |
| AAGTAGAAGATCGAGGCTTG+AGG | 0.632017 | 7.4:+3513694 | None:intergenic |
| GATGCCAGTTTGGCTCATGA+CGG | 0.633667 | 7.4:-3513639 | MS.gene78585:CDS |
| GAGGAAAGTAAACCATAGCA+AGG | 0.636449 | 7.4:-3513514 | MS.gene78585:CDS |
| TTCTTCAGCAAACAGAAATG+TGG | 0.638197 | 7.4:-3513355 | MS.gene78585:CDS |
| CATCCTCTTGCTAGTAAGCG+CGG | 0.640385 | 7.4:+3513984 | None:intergenic |
| ATGGTGGAAGAAGCCAAGCA+GGG | 0.647614 | 7.4:-3513192 | MS.gene78585:CDS |
| CTCAAAGAAGAAGAAGCAGT+CGG | 0.649922 | 7.4:-3513789 | MS.gene78585:CDS |
| TCGAACCTGGGAAGAACAGT+CGG | 0.651934 | 7.4:-3514133 | MS.gene78585:CDS |
| TCCAACGAACCAACATCACA+AGG | 0.651942 | 7.4:+3513102 | None:intergenic |
| AGCAGTCGGTAGCTGCAATG+AGG | 0.651991 | 7.4:-3513775 | MS.gene78585:CDS |
| TGTTATTCAAGAAATAGTTG+AGG | 0.663616 | 7.4:-3513139 | MS.gene78585:CDS |
| AAAGATTGTAATATATCACT+CGG | 0.663784 | 7.4:+3514068 | None:intergenic |
| TCAGAATTCGAAGGAACCTG+CGG | 0.671588 | 7.4:+3513234 | None:intergenic |
| CCATGATCTGAACAATGACG+AGG | 0.689949 | 7.4:+3512892 | None:intergenic |
| TCTGAGCAAACAAAGTATCG+AGG | 0.704395 | 7.4:-3513957 | MS.gene78585:CDS |
| TCAGGTTTCTAAGTCATACG+TGG | 0.707620 | 7.4:-3514273 | MS.gene78585:intron |
| TTACTGTAAGTAGAAGATCG+AGG | 0.716574 | 7.4:+3513687 | None:intergenic |
| ATAAAGGGCACAAATATACG+AGG | 0.729913 | 7.4:-3513533 | MS.gene78585:CDS |
| AATAGGTCCGGAATACCAGG+CGG | 0.777984 | 7.4:-3514915 | MS.gene78585:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAATAATTTCATTTTACTA+TGG | - | chr7.4:3513191-3513210 | MS.gene78585:CDS | 15.0% |
| !!! | GAATTATAATGATATTTTCA+TGG | - | chr7.4:3512890-3512909 | MS.gene78585:CDS | 15.0% |
| !!! | TACTTAGTTTGTTTATTTTT+GGG | - | chr7.4:3513120-3513139 | MS.gene78585:CDS | 15.0% |
| !! | AAAGATTGTAATATATCACT+CGG | + | chr7.4:3513800-3513819 | None:intergenic | 20.0% |
| !! | ACCTAATAAAGAAATAAGAT+GGG | + | chr7.4:3513405-3513424 | None:intergenic | 20.0% |
| !!! | CTACTTAGTTTGTTTATTTT+TGG | - | chr7.4:3513119-3513138 | MS.gene78585:CDS | 20.0% |
| !!! | TAAAGAAAAAAGTACTGATA+CGG | + | chr7.4:3513526-3513545 | None:intergenic | 20.0% |
| !!! | TTCTGAAAATAGAAAAATGA+TGG | - | chr7.4:3514648-3514667 | MS.gene78585:CDS | 20.0% |
| ! | AAAAGATTCATTGAGAACAA+AGG | - | chr7.4:3513161-3513180 | MS.gene78585:CDS | 25.0% |
| ! | AAAGATTCATTGAGAACAAA+GGG | - | chr7.4:3513162-3513181 | MS.gene78585:CDS | 25.0% |
| ! | AAATAGAAAAATGATGGCAA+TGG | - | chr7.4:3514654-3514673 | MS.gene78585:CDS | 25.0% |
| ! | AAGTAGAAAACATCTTGTAT+CGG | + | chr7.4:3513105-3513124 | None:intergenic | 25.0% |
| ! | AATAAAGAAATAAGATGGGA+TGG | + | chr7.4:3513401-3513420 | None:intergenic | 25.0% |
| ! | ACTTTACTCACTGAATTAAT+AGG | + | chr7.4:3514286-3514305 | None:intergenic | 25.0% |
| ! | ATAAAGAAATAAGATGGGAT+GGG | + | chr7.4:3513400-3513419 | None:intergenic | 25.0% |
| ! | CACCTAATAAAGAAATAAGA+TGG | + | chr7.4:3513406-3513425 | None:intergenic | 25.0% |
| ! | CTGCTGGTAAAAAATATAAA+GGG | - | chr7.4:3514317-3514336 | MS.gene78585:intron | 25.0% |
| ! | GATATATTACAATCTTTGAC+AGG | - | chr7.4:3513803-3513822 | MS.gene78585:CDS | 25.0% |
| ! | TAAAGATCACATCAAATTCA+TGG | - | chr7.4:3514198-3514217 | MS.gene78585:CDS | 25.0% |
| ! | TAACTGAACCACAAAAAATT+TGG | + | chr7.4:3514462-3514481 | None:intergenic | 25.0% |
| ! | TGTTATTCAAGAAATAGTTG+AGG | - | chr7.4:3514726-3514745 | MS.gene78585:CDS | 25.0% |
| !! | TCCCATCTTATTTCTTTATT+AGG | - | chr7.4:3513401-3513420 | MS.gene78585:CDS | 25.0% |
| !! | TTTCTATTTTCAGAATTCGA+AGG | + | chr7.4:3514643-3514662 | None:intergenic | 25.0% |
| !!! | AAAGAAAAAAGTACTGATAC+GGG | + | chr7.4:3513525-3513544 | None:intergenic | 25.0% |
| AAAAACCAGATAATCATCAG+AGG | + | chr7.4:3513942-3513961 | None:intergenic | 30.0% | |
| AAAGGGAGAAAATGTATGAT+TGG | - | chr7.4:3513266-3513285 | MS.gene78585:CDS | 30.0% | |
| AAGGGAGAAAATGTATGATT+GGG | - | chr7.4:3513267-3513286 | MS.gene78585:CDS | 30.0% | |
| AATGAGGAAGAGATAGAAAA+GGG | - | chr7.4:3514106-3514125 | MS.gene78585:CDS | 30.0% | |
| ACAAAGTTGACAGATAAACT+AGG | - | chr7.4:3514403-3514422 | MS.gene78585:intron | 30.0% | |
| ATATTACAATCTTTGACAGG+AGG | - | chr7.4:3513806-3513825 | MS.gene78585:CDS | 30.0% | |
| ATCTCAAGATTCTTTGTTAC+AGG | - | chr7.4:3513358-3513377 | MS.gene78585:CDS | 30.0% | |
| CAAAAGTAATGAACTCTTCT+GGG | - | chr7.4:3513847-3513866 | MS.gene78585:CDS | 30.0% | |
| CTTCTCTGATTTCTTAATCA+AGG | + | chr7.4:3512985-3513004 | None:intergenic | 30.0% | |
| GCTGCTGGTAAAAAATATAA+AGG | - | chr7.4:3514316-3514335 | MS.gene78585:intron | 30.0% | |
| TAACAAATACAAGCAAAGTG+AGG | + | chr7.4:3513569-3513588 | None:intergenic | 30.0% | |
| TACTCCATTGTAATTACCAT+TGG | + | chr7.4:3513448-3513467 | None:intergenic | 30.0% | |
| TCTGATTTCTTAATCAAGGA+AGG | + | chr7.4:3512981-3513000 | None:intergenic | 30.0% | |
| ! | ATTGGGAAGAAACTTTTTAC+CGG | - | chr7.4:3513284-3513303 | MS.gene78585:CDS | 30.0% |
| ! | GGAAAGTTTTACAAATCTGA+TGG | - | chr7.4:3513212-3513231 | MS.gene78585:CDS | 30.0% |
| ! | TGAAAATCTTTTGAATCAGC+AGG | + | chr7.4:3513026-3513045 | None:intergenic | 30.0% |
| ! | TTTTAGACATATCCTTGCTA+TGG | + | chr7.4:3514366-3514385 | None:intergenic | 30.0% |
| !! | TCTTCTTTGAAGTTTACTGT+TGG | - | chr7.4:3513644-3513663 | MS.gene78585:CDS | 30.0% |
| !! | TGCTTGTATTTGTTATACTC+AGG | - | chr7.4:3513574-3513593 | MS.gene78585:CDS | 30.0% |
| !!! | GATGCTAACCAAATTTTTTG+TGG | - | chr7.4:3514451-3514470 | MS.gene78585:intron | 30.0% |
| !!! | TATCTGGTTTTTCTTATTCC+CGG | - | chr7.4:3513950-3513969 | MS.gene78585:CDS | 30.0% |
| AATCTTTGACAGGAGGATTT+CGG | - | chr7.4:3513813-3513832 | MS.gene78585:CDS | 35.0% | |
| AGCAAGGATTAAGATGATCT+TGG | + | chr7.4:3514921-3514940 | None:intergenic | 35.0% | |
| AGTGCCAATGGTAATTACAA+TGG | - | chr7.4:3513441-3513460 | MS.gene78585:CDS | 35.0% | |
| ATTCATTGAGAACAAAGGGA+TGG | - | chr7.4:3513166-3513185 | MS.gene78585:CDS | 35.0% | |
| CAATGAGGAAGAGATAGAAA+AGG | - | chr7.4:3514105-3514124 | MS.gene78585:CDS | 35.0% | |
| CAGATAAACTAGGATTCTCT+CGG | - | chr7.4:3514413-3514432 | MS.gene78585:intron | 35.0% | |
| CCAAAAGTAATGAACTCTTC+TGG | - | chr7.4:3513846-3513865 | MS.gene78585:CDS | 35.0% | |
| CGCTAACTGAATCAAAGTAA+TGG | + | chr7.4:3514015-3514034 | None:intergenic | 35.0% | |
| GAGATAGAAAAGGGATCAAA+TGG | - | chr7.4:3514115-3514134 | MS.gene78585:CDS | 35.0% | |
| GATAATAGTTCATGTTGCCT+TGG | + | chr7.4:3513311-3513330 | None:intergenic | 35.0% | |
| TAGAAAAATGATGGCAATGG+TGG | - | chr7.4:3514657-3514676 | MS.gene78585:CDS | 35.0% | |
| TCAAGGAGAAAACTAGTGAA+AGG | - | chr7.4:3513986-3514005 | MS.gene78585:CDS | 35.0% | |
| TGAGATTCTTCAGATACATG+TGG | + | chr7.4:3513344-3513363 | None:intergenic | 35.0% | |
| TGCAAAACTTTGTCTTCTCT+TGG | - | chr7.4:3513773-3513792 | MS.gene78585:CDS | 35.0% | |
| TGTTACCTCTGATGATTATC+TGG | - | chr7.4:3513934-3513953 | MS.gene78585:CDS | 35.0% | |
| TGTTGGAATAAACGTTCTTG+TGG | - | chr7.4:3513661-3513680 | MS.gene78585:CDS | 35.0% | |
| TTACTGTAAGTAGAAGATCG+AGG | + | chr7.4:3514181-3514200 | None:intergenic | 35.0% | |
| TTCAATTCCCTTAGATCAGA+TGG | + | chr7.4:3514256-3514275 | None:intergenic | 35.0% | |
| TTCATTGAGAACAAAGGGAT+GGG | - | chr7.4:3513167-3513186 | MS.gene78585:CDS | 35.0% | |
| TTCTTCAGCAAACAGAAATG+TGG | - | chr7.4:3514510-3514529 | MS.gene78585:CDS | 35.0% | |
| ! | ATAAAGGGCACAAATATACG+AGG | - | chr7.4:3514332-3514351 | MS.gene78585:intron | 35.0% |
| ! | CCAGAAGAGTTCATTACTTT+TGG | + | chr7.4:3513849-3513868 | None:intergenic | 35.0% |
| ! | GAAGACAAAGTTTTGCAAGT+TGG | + | chr7.4:3513770-3513789 | None:intergenic | 35.0% |
| ! | TCTTTGAGGACGAGAATATT+CGG | + | chr7.4:3514064-3514083 | None:intergenic | 35.0% |
| !! | AATCTGATGGATTTCGTAGA+TGG | - | chr7.4:3513225-3513244 | MS.gene78585:CDS | 35.0% |
| !!! | TCTTTCCTTTTTTGCCTCTT+TGG | + | chr7.4:3514886-3514905 | None:intergenic | 35.0% |
| AAATCACGCTCCTATGCAAT+TGG | - | chr7.4:3513050-3513069 | MS.gene78585:CDS | 40.0% | |
| AACAGCCTCATCTAAATCCA+AGG | - | chr7.4:3514788-3514807 | MS.gene78585:CDS | 40.0% | |
| AATTCTTGCATGTGCCAAAG+AGG | - | chr7.4:3514869-3514888 | MS.gene78585:CDS | 40.0% | |
| ACATCACAAGGAGTTCTATG+AGG | + | chr7.4:3514754-3514773 | None:intergenic | 40.0% | |
| ACCATTGACAGTTAGAGCAT+TGG | - | chr7.4:3514831-3514850 | MS.gene78585:CDS | 40.0% | |
| AGAAATAAGATGGGATGGGA+TGG | + | chr7.4:3513396-3513415 | None:intergenic | 40.0% | |
| ATGGATCATGCGTCTTATGA+AGG | - | chr7.4:3512909-3512928 | MS.gene78585:CDS | 40.0% | |
| ATGTGCCAAAGAGGCAAAAA+AGG | - | chr7.4:3514878-3514897 | MS.gene78585:CDS | 40.0% | |
| CATAGAACTCCTTGTGATGT+TGG | - | chr7.4:3514754-3514773 | MS.gene78585:CDS | 40.0% | |
| CATGGGTAAACCAATTGCAT+AGG | + | chr7.4:3513063-3513082 | None:intergenic | 40.0% | |
| CGGAGTGCATGAAGTTAAAA+GGG | - | chr7.4:3513249-3513268 | MS.gene78585:CDS | 40.0% | |
| CTCAAAGAAGAAGAAGCAGT+CGG | - | chr7.4:3514076-3514095 | MS.gene78585:CDS | 40.0% | |
| CTCGTCATTGTTCAGATCAT+GGG | - | chr7.4:3514974-3514993 | MS.gene78585:CDS | 40.0% | |
| GAGGAAAGTAAACCATAGCA+AGG | - | chr7.4:3514351-3514370 | MS.gene78585:intron | 40.0% | |
| GTTTACCCATGTCAGAAACA+TGG | - | chr7.4:3513072-3513091 | MS.gene78585:CDS | 40.0% | |
| GTTTCTAAGTCATACGTGGA+AGG | - | chr7.4:3513596-3513615 | MS.gene78585:CDS | 40.0% | |
| TCAGCAGGATTCATTTGAAG+TGG | + | chr7.4:3513011-3513030 | None:intergenic | 40.0% | |
| TCAGGTTTCTAAGTCATACG+TGG | - | chr7.4:3513592-3513611 | MS.gene78585:CDS | 40.0% | |
| TCAGTTAGTCATCAGCAGAA+TGG | - | chr7.4:3514475-3514494 | MS.gene78585:intron | 40.0% | |
| TCATCTTAATCCTTGCTGCA+AGG | - | chr7.4:3514924-3514943 | MS.gene78585:CDS | 40.0% | |
| TCATTGAGAACAAAGGGATG+GGG | - | chr7.4:3513168-3513187 | MS.gene78585:CDS | 40.0% | |
| TCCAATGCTCTAACTGTCAA+TGG | + | chr7.4:3514835-3514854 | None:intergenic | 40.0% | |
| TCGGAGTGCATGAAGTTAAA+AGG | - | chr7.4:3513248-3513267 | MS.gene78585:CDS | 40.0% | |
| TGAATAACAGATGCGAGACA+TGG | + | chr7.4:3514715-3514734 | None:intergenic | 40.0% | |
| TGCTGCAAGGATTGTAAAAG+AGG | - | chr7.4:3514937-3514956 | MS.gene78585:CDS | 40.0% | |
| TGTCTCCTTGGATTTAGATG+AGG | + | chr7.4:3514796-3514815 | None:intergenic | 40.0% | |
| TTTCAGCATTAACATACCGC+AGG | - | chr7.4:3514615-3514634 | MS.gene78585:CDS | 40.0% | |
| TTTCTATTGCTCTGTCTCCT+TGG | + | chr7.4:3514808-3514827 | None:intergenic | 40.0% | |
| ! | AGAAACTTTTTACCGGACCA+AGG | - | chr7.4:3513291-3513310 | MS.gene78585:CDS | 40.0% |
| ! | AGTAGGGATTGGTAACAAGA+AGG | - | chr7.4:3513688-3513707 | MS.gene78585:CDS | 40.0% |
| ! | CAGCAGGATTCATTTGAAGT+GGG | + | chr7.4:3513010-3513029 | None:intergenic | 40.0% |
| ! | CTTTTACAATCCTTGCAGCA+AGG | + | chr7.4:3514937-3514956 | None:intergenic | 40.0% |
| ! | GTAGGGATTGGTAACAAGAA+GGG | - | chr7.4:3513689-3513708 | MS.gene78585:CDS | 40.0% |
| ! | TAAGATGATCTTGGTGTGTC+TGG | + | chr7.4:3514912-3514931 | None:intergenic | 40.0% |
| !! | AAAGTTGATGTAGATGCTGC+TGG | - | chr7.4:3514301-3514320 | MS.gene78585:intron | 40.0% |
| !! | TCTGAGCAAACAAAGTATCG+AGG | - | chr7.4:3513908-3513927 | MS.gene78585:CDS | 40.0% |
| !! | TGATGGATTTCGTAGATGGT+CGG | - | chr7.4:3513229-3513248 | MS.gene78585:CDS | 40.0% |
| !!! | TGTGCTTTTGATAGTGCCAA+TGG | - | chr7.4:3513429-3513448 | MS.gene78585:CDS | 40.0% |
| AACGTTCTTGTGGAAGCAGT+AGG | - | chr7.4:3513671-3513690 | MS.gene78585:CDS | 45.0% | |
| AAGTAGAAGATCGAGGCTTG+AGG | + | chr7.4:3514174-3514193 | None:intergenic | 45.0% | |
| ACAAGAAGGGAGACCTTACT+AGG | - | chr7.4:3513702-3513721 | MS.gene78585:CDS | 45.0% | |
| ACGGAAAGCCATCTGATCTA+AGG | - | chr7.4:3514245-3514264 | MS.gene78585:CDS | 45.0% | |
| ACGTTCTTGTGGAAGCAGTA+GGG | - | chr7.4:3513672-3513691 | MS.gene78585:CDS | 45.0% | |
| ATCGAGGCTTGAGGTAACAT+TGG | + | chr7.4:3514165-3514184 | None:intergenic | 45.0% | |
| CATTGAGAACAAAGGGATGG+GGG | - | chr7.4:3513169-3513188 | MS.gene78585:CDS | 45.0% | |
| CCATGATCTGAACAATGACG+AGG | + | chr7.4:3514976-3514995 | None:intergenic | 45.0% | |
| CCTCGTCATTGTTCAGATCA+TGG | - | chr7.4:3514973-3514992 | MS.gene78585:CDS | 45.0% | |
| CCTTGAAAACTTCTCAACGC+CGG | + | chr7.4:3513972-3513991 | None:intergenic | 45.0% | |
| CGACTGCTTCTTCTTCTTTG+AGG | + | chr7.4:3514078-3514097 | None:intergenic | 45.0% | |
| CGGAAAGCCATCTGATCTAA+GGG | - | chr7.4:3514246-3514265 | MS.gene78585:CDS | 45.0% | |
| CTATTCGAGGACTCGATTCA+AGG | + | chr7.4:3512935-3512954 | None:intergenic | 45.0% | |
| CTTGAAAACTTCTCAACGCC+GGG | + | chr7.4:3513971-3513990 | None:intergenic | 45.0% | |
| CTTGAATCGAGTCCTCGAAT+AGG | - | chr7.4:3512933-3512952 | MS.gene78585:CDS | 45.0% | |
| TAGTTCATGTTGCCTTGGTC+CGG | + | chr7.4:3513306-3513325 | None:intergenic | 45.0% | |
| TCAGAATTCGAAGGAACCTG+CGG | + | chr7.4:3514634-3514653 | None:intergenic | 45.0% | |
| TCCAACGAACCAACATCACA+AGG | + | chr7.4:3514766-3514785 | None:intergenic | 45.0% | |
| ! | AACTCTTCTGGGAAGCTGTT+TGG | - | chr7.4:3513858-3513877 | MS.gene78585:CDS | 45.0% |
| ! | ATCGCTCCATGTTTCTGACA+TGG | + | chr7.4:3513081-3513100 | None:intergenic | 45.0% |
| ! | TCGCTCCATGTTTCTGACAT+GGG | + | chr7.4:3513080-3513099 | None:intergenic | 45.0% |
| !! | TCCTTGTGATGTTGGTTCGT+TGG | - | chr7.4:3514762-3514781 | MS.gene78585:CDS | 45.0% |
| AAGGGAGACCTTACTAGGCT+TGG | - | chr7.4:3513707-3513726 | MS.gene78585:CDS | 50.0% | |
| AATAGGTCCGGAATACCAGG+CGG | - | chr7.4:3512950-3512969 | MS.gene78585:CDS | 50.0% | |
| ATCGAGTCCTCGAATAGGTC+CGG | - | chr7.4:3512938-3512957 | MS.gene78585:CDS | 50.0% | |
| CATCCTCTTGCTAGTAAGCG+CGG | + | chr7.4:3513884-3513903 | None:intergenic | 50.0% | |
| CATGGTTCCTGATGCCAGTT+TGG | - | chr7.4:3514216-3514235 | MS.gene78585:CDS | 50.0% | |
| CTTGTGGAAGCAGTAGGGAT+TGG | - | chr7.4:3513677-3513696 | MS.gene78585:CDS | 50.0% | |
| CTTTCCGTCATGAGCCAAAC+TGG | + | chr7.4:3514233-3514252 | None:intergenic | 50.0% | |
| GGAATTTCCGCCTGGTATTC+CGG | + | chr7.4:3512960-3512979 | None:intergenic | 50.0% | |
| GTTCGACACCAAGCCTAGTA+AGG | + | chr7.4:3513718-3513737 | None:intergenic | 50.0% | |
| TCAAGGAAGGAATTTCCGCC+TGG | + | chr7.4:3512968-3512987 | None:intergenic | 50.0% | |
| TCATGAGCCAAACTGGCATC+AGG | + | chr7.4:3514226-3514245 | None:intergenic | 50.0% | |
| TCGAACCTGGGAAGAACAGT+CGG | - | chr7.4:3513732-3513751 | MS.gene78585:CDS | 50.0% | |
| TCGAATAGGTCCGGAATACC+AGG | - | chr7.4:3512947-3512966 | MS.gene78585:CDS | 50.0% | |
| TGGTATTCCGGACCTATTCG+AGG | + | chr7.4:3512948-3512967 | None:intergenic | 50.0% | |
| ! | AATGGTGGAAGAAGCCAAGC+AGG | - | chr7.4:3514672-3514691 | MS.gene78585:CDS | 50.0% |
| ! | ATGGTGGAAGAAGCCAAGCA+GGG | - | chr7.4:3514673-3514692 | MS.gene78585:CDS | 50.0% |
| ! | GATGCCAGTTTGGCTCATGA+CGG | - | chr7.4:3514226-3514245 | MS.gene78585:CDS | 50.0% |
| ! | TTTTGCCTTTACGCCCTGCT+TGG | + | chr7.4:3514689-3514708 | None:intergenic | 50.0% |
| !! | CCGGCGTTGAGAAGTTTTCA+AGG | - | chr7.4:3513969-3513988 | MS.gene78585:CDS | 50.0% |
| AACGTCCGACTGTTCTTCCC+AGG | + | chr7.4:3513740-3513759 | None:intergenic | 55.0% | |
| AGAAGCCAAGCAGGGCGTAA+AGG | - | chr7.4:3514681-3514700 | MS.gene78585:CDS | 55.0% | |
| AGCAGTCGGTAGCTGCAATG+AGG | - | chr7.4:3514090-3514109 | MS.gene78585:CDS | 55.0% | |
| CGCGCTTACTAGCAAGAGGA+TGG | - | chr7.4:3513882-3513901 | MS.gene78585:CDS | 55.0% | |
| !! | ACTAGGCTTGGTGTCGAACC+TGG | - | chr7.4:3513719-3513738 | MS.gene78585:CDS | 55.0% |
| !! | CTAGGCTTGGTGTCGAACCT+GGG | - | chr7.4:3513720-3513739 | MS.gene78585:CDS | 55.0% |
| TGGCCGCGCTTACTAGCAAG+AGG | - | chr7.4:3513878-3513897 | MS.gene78585:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 3512873 | 3515014 | 3512873 | ID=MS.gene78585 |
| chr7.4 | mRNA | 3512873 | 3515014 | 3512873 | ID=MS.gene78585.t1;Parent=MS.gene78585 |
| chr7.4 | exon | 3514508 | 3515014 | 3514508 | ID=MS.gene78585.t1.exon1;Parent=MS.gene78585.t1 |
| chr7.4 | CDS | 3514508 | 3515014 | 3514508 | ID=cds.MS.gene78585.t1;Parent=MS.gene78585.t1 |
| chr7.4 | exon | 3512873 | 3514291 | 3512873 | ID=MS.gene78585.t1.exon2;Parent=MS.gene78585.t1 |
| chr7.4 | CDS | 3512873 | 3514291 | 3512873 | ID=cds.MS.gene78585.t1;Parent=MS.gene78585.t1 |
| Gene Sequence |
| Protein sequence |
