Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050893.t1 | ABN08042.1 | 83.1 | 568 | 43 | 2 | 1 | 515 | 163 | 730 | 8.10E-255 | 889.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050893.t1 | G7KYL3 | 83.1 | 568 | 43 | 2 | 1 | 515 | 175 | 742 | 5.8e-255 | 889.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene050893 | MS.gene78584 | PPI |
| MS.gene67159 | MS.gene050893 | PPI |
| MS.gene050893 | MS.gene072482 | PPI |
| MS.gene063225 | MS.gene050893 | PPI |
| MS.gene072481 | MS.gene050893 | PPI |
| MS.gene050893 | MS.gene29350 | PPI |
| MS.gene050893 | MS.gene050891 | PPI |
| MS.gene050893 | MS.gene063225 | PPI |
| MS.gene050738 | MS.gene050893 | PPI |
| MS.gene050893 | MS.gene054416 | PPI |
| MS.gene050893 | MS.gene072483 | PPI |
| MS.gene050893 | MS.gene072542 | PPI |
| MS.gene050893 | MS.gene29351 | PPI |
| MS.gene050893 | MS.gene29352 | PPI |
| MS.gene050893 | MS.gene78588 | PPI |
| MS.gene050893 | MS.gene65461 | PPI |
| MS.gene78587 | MS.gene050893 | PPI |
| MS.gene050893 | MS.gene050890 | PPI |
| MS.gene050893 | MS.gene050889 | PPI |
| MS.gene050893 | MS.gene053360 | PPI |
| MS.gene050893 | MS.gene072484 | PPI |
| MS.gene050893 | MS.gene78586 | PPI |
| MS.gene050893 | MS.gene072485 | PPI |
| MS.gene050893 | MS.gene78585 | PPI |
| MS.gene050893 | MS.gene050892 | PPI |
| MS.gene050893 | MS.gene050942 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050893.t1 | MTR_7g113220 | 84.507 | 568 | 35 | 2 | 1 | 515 | 175 | 742 | 0.0 | 923 |
| MS.gene050893.t1 | MTR_7g113270 | 79.896 | 577 | 49 | 4 | 1 | 515 | 175 | 746 | 0.0 | 863 |
| MS.gene050893.t1 | MTR_1g041895 | 61.794 | 602 | 139 | 11 | 1 | 515 | 201 | 798 | 0.0 | 650 |
| MS.gene050893.t1 | MTR_7g113280 | 67.979 | 381 | 104 | 7 | 1 | 368 | 175 | 550 | 8.90e-161 | 476 |
| MS.gene050893.t1 | MTR_7g113280 | 62.329 | 146 | 52 | 1 | 368 | 510 | 607 | 752 | 1.68e-47 | 176 |
| MS.gene050893.t1 | MTR_7g113250 | 76.015 | 271 | 55 | 2 | 1 | 261 | 163 | 433 | 9.18e-137 | 410 |
| MS.gene050893.t1 | MTR_7g113250 | 69.799 | 149 | 44 | 1 | 368 | 515 | 453 | 601 | 1.14e-58 | 206 |
| MS.gene050893.t1 | MTR_7g112390 | 59.892 | 369 | 74 | 6 | 1 | 364 | 71 | 370 | 1.32e-114 | 355 |
| MS.gene050893.t1 | MTR_7g112390 | 58.278 | 151 | 27 | 4 | 369 | 517 | 549 | 665 | 1.81e-35 | 141 |
| MS.gene050893.t1 | MTR_3g049350 | 73.964 | 169 | 35 | 1 | 102 | 261 | 3 | 171 | 9.93e-77 | 243 |
| MS.gene050893.t1 | MTR_3g049350 | 62.069 | 58 | 21 | 1 | 368 | 424 | 191 | 248 | 5.19e-13 | 69.7 |
| MS.gene050893.t1 | MTR_7g108470 | 46.320 | 231 | 117 | 3 | 2 | 227 | 248 | 476 | 7.38e-55 | 199 |
| MS.gene050893.t1 | MTR_4g119630 | 48.447 | 161 | 76 | 3 | 2 | 156 | 224 | 383 | 6.78e-38 | 145 |
| MS.gene050893.t1 | MTR_2g436970 | 43.791 | 153 | 78 | 6 | 3 | 153 | 162 | 308 | 3.50e-30 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050893.t1 | AT1G09040 | 42.509 | 287 | 136 | 6 | 2 | 265 | 249 | 529 | 7.17e-56 | 201 |
| MS.gene050893.t1 | AT1G09050 | 47.619 | 231 | 108 | 4 | 2 | 224 | 249 | 474 | 1.22e-52 | 192 |
| MS.gene050893.t1 | AT1G09050 | 47.619 | 231 | 108 | 4 | 2 | 224 | 249 | 474 | 1.22e-52 | 192 |
| MS.gene050893.t1 | AT2G47820 | 45.798 | 238 | 113 | 8 | 2 | 229 | 254 | 485 | 1.59e-50 | 186 |
| MS.gene050893.t1 | AT2G47820 | 45.798 | 238 | 113 | 8 | 2 | 229 | 254 | 485 | 1.59e-50 | 186 |
| MS.gene050893.t1 | AT1G55050 | 45.418 | 251 | 111 | 7 | 2 | 245 | 232 | 463 | 3.61e-48 | 179 |
| MS.gene050893.t1 | AT1G55050 | 45.418 | 251 | 111 | 7 | 2 | 245 | 232 | 463 | 3.61e-48 | 179 |
Find 115 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGATGATTTCTGTTTAA+TGG | 0.114639 | 7.1:+3122675 | None:intergenic |
| GTGGAAAGTCATCTGCTTTA+AGG | 0.169329 | 7.1:-3122789 | MS.gene050893:CDS |
| CTTTAGGCCTTGCTCATCTT+TGG | 0.228744 | 7.1:+3121967 | None:intergenic |
| CCCTTGCGATGTTGGTTCTT+TGG | 0.238317 | 7.1:-3121885 | MS.gene050893:CDS |
| CCAAAAGTAATGATCTCTTC+TGG | 0.256574 | 7.1:-3123194 | MS.gene050893:CDS |
| TGTTACCTCCAATGATTATC+TGG | 0.258416 | 7.1:-3123106 | MS.gene050893:CDS |
| TTCAATATTTGACAGGATTT+CGG | 0.272657 | 7.1:-3123227 | MS.gene050893:CDS |
| AGCTGTTTGGCCCCGCTTAC+TGG | 0.290051 | 7.1:-3123169 | MS.gene050893:CDS |
| TGCAAAGCTTTGTCTTCTCT+TGG | 0.309396 | 7.1:-3123264 | MS.gene050893:CDS |
| ATCTCTTCTGGGAAGCTGTT+TGG | 0.318789 | 7.1:-3123182 | MS.gene050893:CDS |
| CCAGAAGAGATCATTACTTT+TGG | 0.323183 | 7.1:+3123194 | None:intergenic |
| CGATTATTATCAAGATTATC+AGG | 0.334671 | 7.1:+3122391 | None:intergenic |
| ACTTTAGGTACCGAATTAAC+AGG | 0.355817 | 7.1:+3122751 | None:intergenic |
| TCAAAATCTACCTCAACTTT+AGG | 0.361337 | 7.1:+3122736 | None:intergenic |
| GAAATCTGTACCTGTTAATT+CGG | 0.363085 | 7.1:-3122761 | MS.gene050893:CDS |
| TCTTTGAGCACGAGAATATT+CGG | 0.365137 | 7.1:+3122979 | None:intergenic |
| CATGGTTATTGATACCAGTT+TGG | 0.371834 | 7.1:-3122818 | MS.gene050893:CDS |
| CTCATTGCAGCTACCAACTT+TGG | 0.379784 | 7.1:+3122945 | None:intergenic |
| TGTCTCCTCGGATTCATATC+AGG | 0.382635 | 7.1:+3121854 | None:intergenic |
| AATGAGGAAGAGCTAGAAAA+TGG | 0.383226 | 7.1:-3122928 | MS.gene050893:CDS |
| TTGAAGTCTACTGTTGGATT+CGG | 0.395238 | 7.1:-3123387 | MS.gene050893:CDS |
| TGGAAAGTCATCTGCTTTAA+GGG | 0.396000 | 7.1:-3122788 | MS.gene050893:CDS |
| ATGTCTAACATCTGCTTCTC+AGG | 0.403324 | 7.1:-3121933 | MS.gene050893:CDS |
| ACCAGGCTTGGCATGGAACC+TGG | 0.404253 | 7.1:-3123318 | MS.gene050893:CDS |
| TGGTATCAATAACCATGAAT+TGG | 0.410482 | 7.1:+3122824 | None:intergenic |
| TAAACATCATATCCAATTCA+TGG | 0.423149 | 7.1:-3122836 | MS.gene050893:CDS |
| TGGTCTTCCGAGAGAAAGTA+AGG | 0.433005 | 7.1:-3122542 | MS.gene050893:CDS |
| CTTTCCACCATGCACCAAAC+TGG | 0.434787 | 7.1:+3122804 | None:intergenic |
| CAAAAGTAATGATCTCTTCT+GGG | 0.437354 | 7.1:-3123193 | MS.gene050893:CDS |
| CACTAACAGAATCAAAATAA+TGG | 0.438290 | 7.1:+3123028 | None:intergenic |
| TCTGTCTCTTTGGCACATGC+AGG | 0.442198 | 7.1:+3121774 | None:intergenic |
| TTGAGAATCCCTTGCGATGT+TGG | 0.445587 | 7.1:-3121893 | MS.gene050893:CDS |
| GAAGCATCTTCTAATTCAAC+TGG | 0.445905 | 7.1:+3122577 | None:intergenic |
| ATCATTAACTGTTAGAGCAT+TGG | 0.448693 | 7.1:-3121816 | MS.gene050893:CDS |
| GTAACATAGCCTCGATACTT+TGG | 0.448775 | 7.1:+3123123 | None:intergenic |
| ATGAAAGGATCTTGTGTGTC+TGG | 0.451476 | 7.1:+3121738 | None:intergenic |
| TTTACTGTAAGTAGAAGATC+GGG | 0.453964 | 7.1:+3122855 | None:intergenic |
| AAGAATATCAATAAAACTGA+TGG | 0.458430 | 7.1:-3122457 | MS.gene050893:CDS |
| AGAAGTGTGGAAGAGGATGA+TGG | 0.459059 | 7.1:-3122124 | MS.gene050893:CDS |
| GAGATAATTCAATATTTGAC+AGG | 0.461702 | 7.1:-3123234 | MS.gene050893:CDS |
| CCCAGGTTCCATGCCAAGCC+TGG | 0.465012 | 7.1:+3123317 | None:intergenic |
| TGTTGGATTCGGCGTACTTG+TGG | 0.471367 | 7.1:-3123376 | MS.gene050893:CDS |
| CCAACCTCTTGCCAGTAAGC+GGG | 0.472085 | 7.1:+3123158 | None:intergenic |
| AGCAGACAGAAGTGTGGAAG+AGG | 0.472115 | 7.1:-3122131 | MS.gene050893:CDS |
| GCCAACCTCTTGCCAGTAAG+CGG | 0.473500 | 7.1:+3123157 | None:intergenic |
| AGGAGAAGGGAGACCTTACC+AGG | 0.478906 | 7.1:-3123335 | MS.gene050893:CDS |
| CTTGTGGAAGCTGTAGGTAT+TGG | 0.483654 | 7.1:-3123360 | MS.gene050893:CDS |
| GAATCCAACAGTAGACTTCA+AGG | 0.489122 | 7.1:+3123389 | None:intergenic |
| AAAGCTTTGCAAGCTGGTGT+TGG | 0.490050 | 7.1:+3123276 | None:intergenic |
| AACGCTTGAACGTCCTTCCC+AGG | 0.490084 | 7.1:+3123300 | None:intergenic |
| GATACCAATAGACTTTCTAA+AGG | 0.496879 | 7.1:-3122640 | MS.gene050893:CDS |
| TCATAAAACATCAACTCAAT+CGG | 0.499106 | 7.1:-3122357 | MS.gene050893:CDS |
| TTTCTAGAGCTCTGTCTCCT+CGG | 0.499320 | 7.1:+3121842 | None:intergenic |
| GAAGACAAAGCTTTGCAAGC+TGG | 0.500111 | 7.1:+3123270 | None:intergenic |
| CAAAGATGAGCAAGGCCTAA+AGG | 0.500939 | 7.1:-3121966 | MS.gene050893:CDS |
| TGTAGGTATTGGTAAGGAGA+AGG | 0.501342 | 7.1:-3123349 | MS.gene050893:CDS |
| TCTTCCTTGAAGTCTACTGT+TGG | 0.506496 | 7.1:-3123393 | MS.gene050893:CDS |
| CCCGCTTACTGGCAAGAGGT+TGG | 0.511676 | 7.1:-3123158 | MS.gene050893:CDS |
| GTAGGTATTGGTAAGGAGAA+GGG | 0.518232 | 7.1:-3123348 | MS.gene050893:CDS |
| GTTTACTGTAAGTAGAAGAT+CGG | 0.518897 | 7.1:+3122854 | None:intergenic |
| TCCTTTCATTCCTTGCTGCA+AGG | 0.521926 | 7.1:-3121724 | MS.gene050893:CDS |
| CTTGAAAACTTCTCAACACC+GGG | 0.523734 | 7.1:+3123072 | None:intergenic |
| GCTTGGCATGGAACCTGGGA+AGG | 0.523977 | 7.1:-3123313 | MS.gene050893:CDS |
| AAGGGAGACCTTACCAGGCT+TGG | 0.525550 | 7.1:-3123330 | MS.gene050893:CDS |
| TCAAGGAGAAAACTTGTGAA+AGG | 0.529448 | 7.1:-3123054 | MS.gene050893:CDS |
| TTTCACCTTCAAAATACCTC+AGG | 0.530787 | 7.1:-3122032 | MS.gene050893:CDS |
| CGAGGAAGGTGGAAGCTAAG+AGG | 0.536516 | 7.1:-3122495 | MS.gene050893:CDS |
| GAAGAAGGAGAAGCCAAAGT+TGG | 0.537968 | 7.1:-3122958 | MS.gene050893:CDS |
| ATTGATACCAGTTTGGTGCA+TGG | 0.543194 | 7.1:-3122811 | MS.gene050893:CDS |
| GAGCCACCCTTACTTTCTCT+CGG | 0.544527 | 7.1:+3122535 | None:intergenic |
| GTTCCATGCCAAGCCTGGTA+AGG | 0.545240 | 7.1:+3123322 | None:intergenic |
| ATTCTCGTGCTCAAAGAAGA+AGG | 0.545546 | 7.1:-3122973 | MS.gene050893:CDS |
| GCCTTGCAGCAAGGAATGAA+AGG | 0.550996 | 7.1:+3121723 | None:intergenic |
| CCAGGCTTGGCATGGAACCT+GGG | 0.556437 | 7.1:-3123317 | MS.gene050893:CDS |
| AATTGATGATTCAGCGAGGA+AGG | 0.558519 | 7.1:-3122509 | MS.gene050893:CDS |
| TGGCCCCGCTTACTGGCAAG+AGG | 0.562669 | 7.1:-3123162 | MS.gene050893:CDS |
| TCCAAAGAACCAACATCGCA+AGG | 0.564093 | 7.1:+3121884 | None:intergenic |
| CCTTGAAAACTTCTCAACAC+CGG | 0.567703 | 7.1:+3123071 | None:intergenic |
| GGAAGCTGTAGGTATTGGTA+AGG | 0.569902 | 7.1:-3123355 | MS.gene050893:CDS |
| GATGCTTCTACGATGACTAC+TGG | 0.571992 | 7.1:-3122562 | MS.gene050893:CDS |
| CTCAATCGGAGAGTAAGATC+AGG | 0.574025 | 7.1:-3122343 | MS.gene050893:intron |
| AGAATATCAATAAAACTGAT+GGG | 0.576074 | 7.1:-3122456 | MS.gene050893:CDS |
| ATCGGGGCTTGAGGTAACAT+TGG | 0.580406 | 7.1:+3122872 | None:intergenic |
| AAATATTGAATTATCTCACT+AGG | 0.581479 | 7.1:+3123240 | None:intergenic |
| AAATAGCAAAACAGTGGCAA+TGG | 0.582256 | 7.1:-3121993 | MS.gene050893:CDS |
| AGACCTTACCAGGCTTGGCA+TGG | 0.583144 | 7.1:-3123325 | MS.gene050893:CDS |
| TGATGATTCAGCGAGGAAGG+TGG | 0.586346 | 7.1:-3122506 | MS.gene050893:CDS |
| TGCTGCAAGGCTCGTACATG+AGG | 0.587898 | 7.1:-3121711 | MS.gene050893:CDS |
| GAAGGTGGAAGCTAAGAGGC+TGG | 0.588548 | 7.1:-3122491 | MS.gene050893:CDS |
| AAGTAGAAGATCGGGGCTTG+AGG | 0.596284 | 7.1:+3122863 | None:intergenic |
| CAACCTCTTGCCAGTAAGCG+GGG | 0.601857 | 7.1:+3123159 | None:intergenic |
| ATTTCAAACTCATTTATGGA+GGG | 0.618189 | 7.1:-3123441 | None:intergenic |
| CATGTACGAGCCTTGCAGCA+AGG | 0.618706 | 7.1:+3121714 | None:intergenic |
| TAATTCGGTACCTAAAGTTG+AGG | 0.619420 | 7.1:-3122746 | MS.gene050893:CDS |
| TGAGAAGCAGATGTTAGACA+TGG | 0.623383 | 7.1:+3121935 | None:intergenic |
| ACATCGCAAGGGATTCTCAA+AGG | 0.629989 | 7.1:+3121896 | None:intergenic |
| TCAGACTTCGATGGTACCTG+AGG | 0.633461 | 7.1:+3122016 | None:intergenic |
| GGCGTACTTGTGGAAGCTGT+AGG | 0.638020 | 7.1:-3123366 | MS.gene050893:CDS |
| AAATGAAGATGATCTGTCTG+AGG | 0.639665 | 7.1:-3122902 | MS.gene050893:CDS |
| CAGGAAGGTAAACCATAGCA+AGG | 0.639889 | 7.1:-3122710 | MS.gene050893:CDS |
| CCAAAGAACCAACATCGCAA+GGG | 0.641761 | 7.1:+3121885 | None:intergenic |
| CAAAGTTGGTAGCTGCAATG+AGG | 0.643587 | 7.1:-3122944 | MS.gene050893:CDS |
| ATGGCAGCCAAAGATGAGCA+AGG | 0.645766 | 7.1:-3121974 | MS.gene050893:CDS |
| AACAGCCTGATATGAATCCG+AGG | 0.663816 | 7.1:-3121859 | MS.gene050893:CDS |
| TTCTTCAGCAGACAGAAGTG+TGG | 0.665376 | 7.1:-3122137 | MS.gene050893:CDS |
| TGCAGTGGTGTATCTAACAG+TGG | 0.666374 | 7.1:-3122433 | MS.gene050893:CDS |
| GTCTGAAAATAGCAAAACAG+TGG | 0.675882 | 7.1:-3121999 | MS.gene050893:CDS |
| GGTCTTCCGAGAGAAAGTAA+GGG | 0.678263 | 7.1:-3122541 | MS.gene050893:CDS |
| CTTCCGAGAGAAAGTAAGGG+TGG | 0.678655 | 7.1:-3122538 | MS.gene050893:CDS |
| AATAAAACTGATGGGTGCAG+TGG | 0.689182 | 7.1:-3122448 | MS.gene050893:CDS |
| GATACCAGTTTGGTGCATGG+TGG | 0.695831 | 7.1:-3122808 | MS.gene050893:CDS |
| TCTGAGCAACCAAAGTATCG+AGG | 0.695852 | 7.1:-3123132 | MS.gene050893:CDS |
| TTACTGTAAGTAGAAGATCG+GGG | 0.758080 | 7.1:+3122856 | None:intergenic |
| TTGATAATAATCGATTAACG+AGG | 0.768384 | 7.1:-3122381 | MS.gene050893:CDS |
| CTAGAATTGATGATTCAGCG+AGG | 0.781263 | 7.1:-3122513 | MS.gene050893:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTGAATTATCTCACT+AGG | + | chr7.1:3121892-3121911 | None:intergenic | 20.0% |
| !! | AAGAATATCAATAAAACTGA+TGG | - | chr7.1:3122672-3122691 | MS.gene050893:CDS | 20.0% |
| !! | AGAATATCAATAAAACTGAT+GGG | - | chr7.1:3122673-3122692 | MS.gene050893:CDS | 20.0% |
| ! | AAGAAAAACCAGATAATCAT+TGG | + | chr7.1:3122034-3122053 | None:intergenic | 25.0% |
| ! | CACTAACAGAATCAAAATAA+TGG | + | chr7.1:3122104-3122123 | None:intergenic | 25.0% |
| ! | CGATTATTATCAAGATTATC+AGG | + | chr7.1:3122741-3122760 | None:intergenic | 25.0% |
| ! | GAGATAATTCAATATTTGAC+AGG | - | chr7.1:3121895-3121914 | MS.gene050893:CDS | 25.0% |
| ! | TAAACATCATATCCAATTCA+TGG | - | chr7.1:3122293-3122312 | MS.gene050893:intron | 25.0% |
| ! | TCATAAAACATCAACTCAAT+CGG | - | chr7.1:3122772-3122791 | MS.gene050893:CDS | 25.0% |
| ! | TTCAATATTTGACAGGATTT+CGG | - | chr7.1:3121902-3121921 | MS.gene050893:CDS | 25.0% |
| !! | CTTTGATGATTTCTGTTTAA+TGG | + | chr7.1:3122457-3122476 | None:intergenic | 25.0% |
| !! | GATTTCTGTTTAATGGTTTT+AGG | + | chr7.1:3122450-3122469 | None:intergenic | 25.0% |
| !! | TTGATAATAATCGATTAACG+AGG | - | chr7.1:3122748-3122767 | MS.gene050893:CDS | 25.0% |
| !!! | TTTTCCTTTAGAAAGTCTAT+TGG | + | chr7.1:3122496-3122515 | None:intergenic | 25.0% |
| AAAAACCAGATAATCATTGG+AGG | + | chr7.1:3122031-3122050 | None:intergenic | 30.0% | |
| ATCATTAACTGTTAGAGCAT+TGG | - | chr7.1:3123313-3123332 | MS.gene050893:CDS | 30.0% | |
| CAAAAGTAATGATCTCTTCT+GGG | - | chr7.1:3121936-3121955 | MS.gene050893:CDS | 30.0% | |
| GAAATCTGTACCTGTTAATT+CGG | - | chr7.1:3122368-3122387 | MS.gene050893:CDS | 30.0% | |
| GATACCAATAGACTTTCTAA+AGG | - | chr7.1:3122489-3122508 | MS.gene050893:CDS | 30.0% | |
| GTTTACTGTAAGTAGAAGAT+CGG | + | chr7.1:3122278-3122297 | None:intergenic | 30.0% | |
| TCAAAATCTACCTCAACTTT+AGG | + | chr7.1:3122396-3122415 | None:intergenic | 30.0% | |
| TGGTATCAATAACCATGAAT+TGG | + | chr7.1:3122308-3122327 | None:intergenic | 30.0% | |
| TTTACTGTAAGTAGAAGATC+GGG | + | chr7.1:3122277-3122296 | None:intergenic | 30.0% | |
| ! | GTCAATTTCCTCCTTTTAAT+AGG | + | chr7.1:3122834-3122853 | None:intergenic | 30.0% |
| ! | TCTTTCTTTTTCTGTCTCTT+TGG | + | chr7.1:3123368-3123387 | None:intergenic | 30.0% |
| ! | TTTCCTCCTTTTAATAGGAA+CGG | + | chr7.1:3122829-3122848 | None:intergenic | 30.0% |
| !!! | ATTATCAGGTGCTTTTTTAC+TGG | + | chr7.1:3122727-3122746 | None:intergenic | 30.0% |
| !!! | TATCTGGTTTTTCTTATTCC+CGG | - | chr7.1:3122039-3122058 | MS.gene050893:CDS | 30.0% |
| AAATAGCAAAACAGTGGCAA+TGG | - | chr7.1:3123136-3123155 | MS.gene050893:CDS | 35.0% | |
| AAATGAAGATGATCTGTCTG+AGG | - | chr7.1:3122227-3122246 | MS.gene050893:intron | 35.0% | |
| AATGAGGAAGAGCTAGAAAA+TGG | - | chr7.1:3122201-3122220 | MS.gene050893:intron | 35.0% | |
| CATGGTTATTGATACCAGTT+TGG | - | chr7.1:3122311-3122330 | MS.gene050893:intron | 35.0% | |
| CCAAAAGTAATGATCTCTTC+TGG | - | chr7.1:3121935-3121954 | MS.gene050893:CDS | 35.0% | |
| CTGAAGAATTCTCAACAATC+CGG | + | chr7.1:3122881-3122900 | None:intergenic | 35.0% | |
| GAGAATTCTTCAGGATGTTT+AGG | - | chr7.1:3122888-3122907 | MS.gene050893:CDS | 35.0% | |
| GATGCAAACCAAAATGTTTG+TGG | - | chr7.1:3122936-3122955 | MS.gene050893:CDS | 35.0% | |
| GTCTGAAAATAGCAAAACAG+TGG | - | chr7.1:3123130-3123149 | MS.gene050893:CDS | 35.0% | |
| TAATTCGGTACCTAAAGTTG+AGG | - | chr7.1:3122383-3122402 | MS.gene050893:CDS | 35.0% | |
| TCAAGGAGAAAACTTGTGAA+AGG | - | chr7.1:3122075-3122094 | MS.gene050893:CDS | 35.0% | |
| TCTTTGAGCACGAGAATATT+CGG | + | chr7.1:3122153-3122172 | None:intergenic | 35.0% | |
| TGGAAAGTCATCTGCTTTAA+GGG | - | chr7.1:3122341-3122360 | MS.gene050893:intron | 35.0% | |
| TGTTACCTCCAATGATTATC+TGG | - | chr7.1:3122023-3122042 | MS.gene050893:CDS | 35.0% | |
| TTACTGTAAGTAGAAGATCG+GGG | + | chr7.1:3122276-3122295 | None:intergenic | 35.0% | |
| TTGAAGTCTACTGTTGGATT+CGG | - | chr7.1:3121742-3121761 | MS.gene050893:CDS | 35.0% | |
| TTTCACCTTCAAAATACCTC+AGG | - | chr7.1:3123097-3123116 | MS.gene050893:CDS | 35.0% | |
| ! | CCAGAAGAGATCATTACTTT+TGG | + | chr7.1:3121938-3121957 | None:intergenic | 35.0% |
| ! | GAAGCATCTTCTAATTCAAC+TGG | + | chr7.1:3122555-3122574 | None:intergenic | 35.0% |
| ! | TAACTGGACCACAAACATTT+TGG | + | chr7.1:3122947-3122966 | None:intergenic | 35.0% |
| !! | ACTTTAGGTACCGAATTAAC+AGG | + | chr7.1:3122381-3122400 | None:intergenic | 35.0% |
| !!! | GACATGGATTTTTTGCCTTT+AGG | + | chr7.1:3123181-3123200 | None:intergenic | 35.0% |
| !!! | TTGAGGTAGATTTTGATTGC+AGG | - | chr7.1:3122400-3122419 | MS.gene050893:CDS | 35.0% |
| !!! | TTGCTATTTTCAGACTTCGA+TGG | + | chr7.1:3123125-3123144 | None:intergenic | 35.0% |
| ATGAAAGGATCTTGTGTGTC+TGG | + | chr7.1:3123394-3123413 | None:intergenic | 40.0% | |
| ATGCAGCCGTTCCTATTAAA+AGG | - | chr7.1:3122820-3122839 | MS.gene050893:CDS | 40.0% | |
| ATGTCTAACATCTGCTTCTC+AGG | - | chr7.1:3123196-3123215 | MS.gene050893:CDS | 40.0% | |
| ATTCTCGTGCTCAAAGAAGA+AGG | - | chr7.1:3122156-3122175 | MS.gene050893:CDS | 40.0% | |
| CCTTGAAAACTTCTCAACAC+CGG | + | chr7.1:3122061-3122080 | None:intergenic | 40.0% | |
| CGGATTGTTGAGAATTCTTC+AGG | - | chr7.1:3122879-3122898 | MS.gene050893:CDS | 40.0% | |
| CTTGAAAACTTCTCAACACC+GGG | + | chr7.1:3122060-3122079 | None:intergenic | 40.0% | |
| GAATCCAACAGTAGACTTCA+AGG | + | chr7.1:3121743-3121762 | None:intergenic | 40.0% | |
| GTAACATAGCCTCGATACTT+TGG | + | chr7.1:3122009-3122028 | None:intergenic | 40.0% | |
| GTGGAAAGTCATCTGCTTTA+AGG | - | chr7.1:3122340-3122359 | MS.gene050893:intron | 40.0% | |
| TCATTCTGCTGATGACTAAC+TGG | + | chr7.1:3122963-3122982 | None:intergenic | 40.0% | |
| TCTTCCTTGAAGTCTACTGT+TGG | - | chr7.1:3121736-3121755 | MS.gene050893:CDS | 40.0% | |
| TGAGAAGCAGATGTTAGACA+TGG | + | chr7.1:3123197-3123216 | None:intergenic | 40.0% | |
| ! | AATAAAACTGATGGGTGCAG+TGG | - | chr7.1:3122681-3122700 | MS.gene050893:CDS | 40.0% |
| ! | AATCCGGCTTTTCTCTGATT+TGG | + | chr7.1:3122865-3122884 | None:intergenic | 40.0% |
| ! | AATTGATGATTCAGCGAGGA+AGG | - | chr7.1:3122620-3122639 | MS.gene050893:CDS | 40.0% |
| ! | CAGGATGTTTAGGATTCTCT+CGG | - | chr7.1:3122898-3122917 | MS.gene050893:CDS | 40.0% |
| ! | CTAGAATTGATGATTCAGCG+AGG | - | chr7.1:3122616-3122635 | MS.gene050893:CDS | 40.0% |
| ! | TGCAAAGCTTTGTCTTCTCT+TGG | - | chr7.1:3121865-3121884 | MS.gene050893:CDS | 40.0% |
| !! | ATTGATACCAGTTTGGTGCA+TGG | - | chr7.1:3122318-3122337 | MS.gene050893:intron | 40.0% |
| !! | GTAGGTATTGGTAAGGAGAA+GGG | - | chr7.1:3121781-3121800 | MS.gene050893:CDS | 40.0% |
| !! | TGGTACCTGAGGTATTTTGA+AGG | + | chr7.1:3123105-3123124 | None:intergenic | 40.0% |
| !! | TGTAGGTATTGGTAAGGAGA+AGG | - | chr7.1:3121780-3121799 | MS.gene050893:CDS | 40.0% |
| !!! | GGTAGATTTTGATTGCAGGA+AGG | - | chr7.1:3122404-3122423 | MS.gene050893:CDS | 40.0% |
| AAAGCTTTGCAAGCTGGTGT+TGG | + | chr7.1:3121856-3121875 | None:intergenic | 45.0% | |
| AACAGCCTGATATGAATCCG+AGG | - | chr7.1:3123270-3123289 | MS.gene050893:CDS | 45.0% | |
| ACATCGCAAGGGATTCTCAA+AGG | + | chr7.1:3123236-3123255 | None:intergenic | 45.0% | |
| CAAAGATGAGCAAGGCCTAA+AGG | - | chr7.1:3123163-3123182 | MS.gene050893:CDS | 45.0% | |
| CAGCCGTTCCTATTAAAAGG+AGG | - | chr7.1:3122823-3122842 | MS.gene050893:CDS | 45.0% | |
| CAGGAAGGTAAACCATAGCA+AGG | - | chr7.1:3122419-3122438 | MS.gene050893:CDS | 45.0% | |
| CCAAAGAACCAACATCGCAA+GGG | + | chr7.1:3123247-3123266 | None:intergenic | 45.0% | |
| CTCAATCGGAGAGTAAGATC+AGG | - | chr7.1:3122786-3122805 | MS.gene050893:CDS | 45.0% | |
| CTCATTGCAGCTACCAACTT+TGG | + | chr7.1:3122187-3122206 | None:intergenic | 45.0% | |
| CTTGTGGAAGCTGTAGGTAT+TGG | - | chr7.1:3121769-3121788 | MS.gene050893:CDS | 45.0% | |
| CTTTAGGCCTTGCTCATCTT+TGG | + | chr7.1:3123165-3123184 | None:intergenic | 45.0% | |
| GAAGAAGGAGAAGCCAAAGT+TGG | - | chr7.1:3122171-3122190 | MS.gene050893:intron | 45.0% | |
| GAAGACAAAGCTTTGCAAGC+TGG | + | chr7.1:3121862-3121881 | None:intergenic | 45.0% | |
| GATGCTTCTACGATGACTAC+TGG | - | chr7.1:3122567-3122586 | MS.gene050893:CDS | 45.0% | |
| GGTCTTCCGAGAGAAAGTAA+GGG | - | chr7.1:3122588-3122607 | MS.gene050893:CDS | 45.0% | |
| GTGCCAAATCAGAGAAAAGC+CGG | - | chr7.1:3122859-3122878 | MS.gene050893:CDS | 45.0% | |
| TCCAAAGAACCAACATCGCA+AGG | + | chr7.1:3123248-3123267 | None:intergenic | 45.0% | |
| TCCTTTCATTCCTTGCTGCA+AGG | - | chr7.1:3123405-3123424 | MS.gene050893:CDS | 45.0% | |
| TGCAGTGGTGTATCTAACAG+TGG | - | chr7.1:3122696-3122715 | MS.gene050893:CDS | 45.0% | |
| TGGTCTTCCGAGAGAAAGTA+AGG | - | chr7.1:3122587-3122606 | MS.gene050893:CDS | 45.0% | |
| TGTCTCCTCGGATTCATATC+AGG | + | chr7.1:3123278-3123297 | None:intergenic | 45.0% | |
| TTCTTCAGCAGACAGAAGTG+TGG | - | chr7.1:3122992-3123011 | MS.gene050893:CDS | 45.0% | |
| TTGAGAATCCCTTGCGATGT+TGG | - | chr7.1:3123236-3123255 | MS.gene050893:CDS | 45.0% | |
| ! | AGAAGTGTGGAAGAGGATGA+TGG | - | chr7.1:3123005-3123024 | MS.gene050893:CDS | 45.0% |
| ! | ATCTCTTCTGGGAAGCTGTT+TGG | - | chr7.1:3121947-3121966 | MS.gene050893:CDS | 45.0% |
| ! | TTTTAGGCGCATCCTTGCTA+TGG | + | chr7.1:3122434-3122453 | None:intergenic | 45.0% |
| !! | CAAAGTTGGTAGCTGCAATG+AGG | - | chr7.1:3122185-3122204 | MS.gene050893:intron | 45.0% |
| !! | CCGGTGTTGAGAAGTTTTCA+AGG | - | chr7.1:3122058-3122077 | MS.gene050893:CDS | 45.0% |
| !! | GGAAGCTGTAGGTATTGGTA+AGG | - | chr7.1:3121774-3121793 | MS.gene050893:CDS | 45.0% |
| !! | TCTGAGCAACCAAAGTATCG+AGG | - | chr7.1:3121997-3122016 | MS.gene050893:CDS | 45.0% |
| !! | TTTCTAGAGCTCTGTCTCCT+CGG | + | chr7.1:3123290-3123309 | None:intergenic | 45.0% |
| AAGTAGAAGATCGGGGCTTG+AGG | + | chr7.1:3122269-3122288 | None:intergenic | 50.0% | |
| ATCGGGGCTTGAGGTAACAT+TGG | + | chr7.1:3122260-3122279 | None:intergenic | 50.0% | |
| ATGGCAGCCAAAGATGAGCA+AGG | - | chr7.1:3123155-3123174 | MS.gene050893:CDS | 50.0% | |
| CTTCCGAGAGAAAGTAAGGG+TGG | - | chr7.1:3122591-3122610 | MS.gene050893:CDS | 50.0% | |
| CTTTCCACCATGCACCAAAC+TGG | + | chr7.1:3122328-3122347 | None:intergenic | 50.0% | |
| GAGCCACCCTTACTTTCTCT+CGG | + | chr7.1:3122597-3122616 | None:intergenic | 50.0% | |
| GCCTTGCAGCAAGGAATGAA+AGG | + | chr7.1:3123409-3123428 | None:intergenic | 50.0% | |
| TCAGACTTCGATGGTACCTG+AGG | + | chr7.1:3123116-3123135 | None:intergenic | 50.0% | |
| TCTGTCTCTTTGGCACATGC+AGG | + | chr7.1:3123358-3123377 | None:intergenic | 50.0% | |
| TGATGATTCAGCGAGGAAGG+TGG | - | chr7.1:3122623-3122642 | MS.gene050893:CDS | 50.0% | |
| TGTTGGATTCGGCGTACTTG+TGG | - | chr7.1:3121753-3121772 | MS.gene050893:CDS | 50.0% | |
| ! | AGCAGACAGAAGTGTGGAAG+AGG | - | chr7.1:3122998-3123017 | MS.gene050893:CDS | 50.0% |
| !! | CCCTTGCGATGTTGGTTCTT+TGG | - | chr7.1:3123244-3123263 | MS.gene050893:CDS | 50.0% |
| !! | GATACCAGTTTGGTGCATGG+TGG | - | chr7.1:3122321-3122340 | MS.gene050893:intron | 50.0% |
| AACGCTTGAACGTCCTTCCC+AGG | + | chr7.1:3121832-3121851 | None:intergenic | 55.0% | |
| AAGGGAGACCTTACCAGGCT+TGG | - | chr7.1:3121799-3121818 | MS.gene050893:CDS | 55.0% | |
| AGACCTTACCAGGCTTGGCA+TGG | - | chr7.1:3121804-3121823 | MS.gene050893:CDS | 55.0% | |
| AGGAGAAGGGAGACCTTACC+AGG | - | chr7.1:3121794-3121813 | MS.gene050893:CDS | 55.0% | |
| CAACCTCTTGCCAGTAAGCG+GGG | + | chr7.1:3121973-3121992 | None:intergenic | 55.0% | |
| CATGTACGAGCCTTGCAGCA+AGG | + | chr7.1:3123418-3123437 | None:intergenic | 55.0% | |
| CCAACCTCTTGCCAGTAAGC+GGG | + | chr7.1:3121974-3121993 | None:intergenic | 55.0% | |
| CGAGGAAGGTGGAAGCTAAG+AGG | - | chr7.1:3122634-3122653 | MS.gene050893:CDS | 55.0% | |
| GAAGGTGGAAGCTAAGAGGC+TGG | - | chr7.1:3122638-3122657 | MS.gene050893:CDS | 55.0% | |
| GCCAACCTCTTGCCAGTAAG+CGG | + | chr7.1:3121975-3121994 | None:intergenic | 55.0% | |
| GGCGTACTTGTGGAAGCTGT+AGG | - | chr7.1:3121763-3121782 | MS.gene050893:CDS | 55.0% | |
| GTTCCATGCCAAGCCTGGTA+AGG | + | chr7.1:3121810-3121829 | None:intergenic | 55.0% | |
| TGCTGCAAGGCTCGTACATG+AGG | - | chr7.1:3123418-3123437 | MS.gene050893:CDS | 55.0% | |
| ACCAGGCTTGGCATGGAACC+TGG | - | chr7.1:3121811-3121830 | MS.gene050893:CDS | 60.0% | |
| AGCTGTTTGGCCCCGCTTAC+TGG | - | chr7.1:3121960-3121979 | MS.gene050893:CDS | 60.0% | |
| CCAGGCTTGGCATGGAACCT+GGG | - | chr7.1:3121812-3121831 | MS.gene050893:CDS | 60.0% | |
| CCCGCTTACTGGCAAGAGGT+TGG | - | chr7.1:3121971-3121990 | MS.gene050893:CDS | 60.0% | |
| GCTTGGCATGGAACCTGGGA+AGG | - | chr7.1:3121816-3121835 | MS.gene050893:CDS | 60.0% | |
| CCCAGGTTCCATGCCAAGCC+TGG | + | chr7.1:3121815-3121834 | None:intergenic | 65.0% | |
| TGGCCCCGCTTACTGGCAAG+AGG | - | chr7.1:3121967-3121986 | MS.gene050893:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 3121703 | 3123448 | 3121703 | ID=MS.gene050893 |
| chr7.1 | mRNA | 3121703 | 3123448 | 3121703 | ID=MS.gene050893.t1;Parent=MS.gene050893 |
| chr7.1 | exon | 3122344 | 3123448 | 3122344 | ID=MS.gene050893.t1.exon1;Parent=MS.gene050893.t1 |
| chr7.1 | CDS | 3122344 | 3123448 | 3122344 | ID=cds.MS.gene050893.t1;Parent=MS.gene050893.t1 |
| chr7.1 | exon | 3121703 | 3122187 | 3121703 | ID=MS.gene050893.t1.exon2;Parent=MS.gene050893.t1 |
| chr7.1 | CDS | 3121703 | 3122187 | 3121703 | ID=cds.MS.gene050893.t1;Parent=MS.gene050893.t1 |
| Gene Sequence |
| Protein sequence |
