Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29352.t1 | XP_024626885.1 | 92.5 | 642 | 46 | 1 | 1 | 640 | 1 | 642 | 0.00E+00 | 1187.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29352.t1 | A2Q346 | 92.4 | 631 | 46 | 1 | 13 | 641 | 1 | 631 | 0.0e+00 | 1164.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050892 | MS.gene29352 | 0.969443 | 3.95E-130 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene054416 | MS.gene29352 | PPI |
| MS.gene29352 | MS.gene050891 | PPI |
| MS.gene072481 | MS.gene29352 | PPI |
| MS.gene29352 | MS.gene072482 | PPI |
| MS.gene29352 | MS.gene072542 | PPI |
| MS.gene072483 | MS.gene29352 | PPI |
| MS.gene050738 | MS.gene29352 | PPI |
| MS.gene063225 | MS.gene29352 | PPI |
| MS.gene29352 | MS.gene78588 | PPI |
| MS.gene29352 | MS.gene050890 | PPI |
| MS.gene29350 | MS.gene29352 | PPI |
| MS.gene29352 | MS.gene050889 | PPI |
| MS.gene29352 | MS.gene072484 | PPI |
| MS.gene29352 | MS.gene78586 | PPI |
| MS.gene29352 | MS.gene072485 | PPI |
| MS.gene65461 | MS.gene29352 | PPI |
| MS.gene050893 | MS.gene29352 | PPI |
| MS.gene29352 | MS.gene050892 | PPI |
| MS.gene78585 | MS.gene29352 | PPI |
| MS.gene29352 | MS.gene78584 | PPI |
| MS.gene78587 | MS.gene29352 | PPI |
| MS.gene29351 | MS.gene29352 | PPI |
| MS.gene072484 | MS.gene29352 | PPI |
| MS.gene29352 | MS.gene050942 | PPI |
| MS.gene67159 | MS.gene29352 | PPI |
| MS.gene050889 | MS.gene29352 | PPI |
| MS.gene053360 | MS.gene29352 | PPI |
| MS.gene29352 | MS.gene29350 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29352.t1 | MTR_7g113250 | 92.393 | 631 | 46 | 1 | 13 | 641 | 1 | 631 | 0.0 | 1204 |
| MS.gene29352.t1 | MTR_1g041895 | 73.348 | 469 | 98 | 2 | 1 | 442 | 1 | 469 | 0.0 | 687 |
| MS.gene29352.t1 | MTR_1g041895 | 63.184 | 201 | 69 | 3 | 442 | 641 | 630 | 826 | 6.35e-65 | 229 |
| MS.gene29352.t1 | MTR_7g113280 | 74.775 | 444 | 110 | 2 | 1 | 442 | 1 | 444 | 0.0 | 672 |
| MS.gene29352.t1 | MTR_7g113280 | 62.874 | 167 | 60 | 1 | 442 | 606 | 586 | 752 | 1.40e-54 | 199 |
| MS.gene29352.t1 | MTR_7g113270 | 75.506 | 445 | 100 | 3 | 1 | 442 | 1 | 439 | 0.0 | 649 |
| MS.gene29352.t1 | MTR_7g113270 | 71.429 | 175 | 49 | 1 | 445 | 619 | 581 | 754 | 8.66e-74 | 252 |
| MS.gene29352.t1 | MTR_7g113220 | 74.550 | 444 | 100 | 3 | 1 | 441 | 1 | 434 | 0.0 | 643 |
| MS.gene29352.t1 | MTR_7g113220 | 71.429 | 175 | 49 | 1 | 445 | 619 | 577 | 750 | 1.08e-72 | 249 |
| MS.gene29352.t1 | MTR_3g049350 | 91.393 | 244 | 19 | 1 | 278 | 519 | 4 | 247 | 4.67e-155 | 447 |
| MS.gene29352.t1 | MTR_7g112390 | 62.426 | 338 | 55 | 3 | 105 | 442 | 1 | 266 | 4.35e-129 | 397 |
| MS.gene29352.t1 | MTR_7g112390 | 54.774 | 199 | 55 | 3 | 442 | 639 | 527 | 691 | 7.79e-51 | 187 |
| MS.gene29352.t1 | MTR_7g108470 | 46.471 | 340 | 172 | 3 | 68 | 400 | 140 | 476 | 5.45e-97 | 318 |
| MS.gene29352.t1 | MTR_4g119630 | 39.945 | 363 | 174 | 5 | 13 | 336 | 31 | 388 | 3.43e-79 | 259 |
| MS.gene29352.t1 | MTR_2g436970 | 39.016 | 305 | 171 | 9 | 26 | 328 | 17 | 308 | 2.68e-58 | 202 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29352.t1 | AT1G09040 | 48.266 | 346 | 166 | 4 | 60 | 395 | 130 | 472 | 2.08e-96 | 316 |
| MS.gene29352.t1 | AT1G09050 | 48.348 | 333 | 161 | 3 | 71 | 395 | 143 | 472 | 1.13e-92 | 306 |
| MS.gene29352.t1 | AT1G09050 | 48.348 | 333 | 161 | 3 | 71 | 395 | 143 | 472 | 1.13e-92 | 306 |
| MS.gene29352.t1 | AT2G47820 | 36.543 | 457 | 211 | 9 | 25 | 406 | 37 | 489 | 5.35e-84 | 281 |
| MS.gene29352.t1 | AT2G47820 | 36.543 | 457 | 211 | 9 | 25 | 406 | 37 | 489 | 5.35e-84 | 281 |
| MS.gene29352.t1 | AT1G55050 | 37.783 | 442 | 202 | 7 | 26 | 406 | 27 | 456 | 2.14e-82 | 278 |
| MS.gene29352.t1 | AT1G55050 | 37.783 | 442 | 202 | 7 | 26 | 406 | 27 | 456 | 2.14e-82 | 278 |
Find 118 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCAAGATTCTTTGTTAC+AGG | 0.220266 | 7.2:-3912862 | MS.gene29352:intron |
| CCAGAAGAGTTCATTACTTT+TGG | 0.252967 | 7.2:+3912374 | None:intergenic |
| ACTTTACTCACTGAATTAAT+AGG | 0.270204 | 7.2:+3911937 | None:intergenic |
| TCGGAGTGCATGAAGTTAAA+AGG | 0.272347 | 7.2:-3912972 | MS.gene29352:CDS |
| TGTTACCTCTGATGATTATC+TGG | 0.279909 | 7.2:-3912286 | MS.gene29352:CDS |
| CCAAAAGTAATGAACTCTTC+TGG | 0.298884 | 7.2:-3912374 | MS.gene29352:CDS |
| CATGGTTCCTGATGCCAGTT+TGG | 0.323236 | 7.2:-3912004 | MS.gene29352:CDS |
| TGCAAAACTTTGTCTTCTCT+TGG | 0.332450 | 7.2:-3912447 | MS.gene29352:CDS |
| GGAATTTCCGCCTGGTATTC+CGG | 0.334652 | 7.2:+3913263 | None:intergenic |
| ACGGAAAGCCATCTGATCTA+AGG | 0.340846 | 7.2:-3911975 | MS.gene29352:CDS |
| AATCTTTGACAGGAGGATTT+CGG | 0.353199 | 7.2:-3912407 | MS.gene29352:CDS |
| CGACTGCTTCTTCTTCTTTG+AGG | 0.363013 | 7.2:+3912145 | None:intergenic |
| AACTCTTCTGGGAAGCTGTT+TGG | 0.365864 | 7.2:-3912362 | MS.gene29352:CDS |
| AAAGGGAGAAAATGTATGAT+TGG | 0.366261 | 7.2:-3912954 | MS.gene29352:CDS |
| TTTCTATTGCTCTGTCTCCT+TGG | 0.376494 | 7.2:+3911415 | None:intergenic |
| TAAGATGATCTTGGTGTGTC+TGG | 0.380602 | 7.2:+3911311 | None:intergenic |
| CTTTCCGTCATGAGCCAAAC+TGG | 0.381154 | 7.2:+3911990 | None:intergenic |
| GAGATAGAAAAGGGATCAAA+TGG | 0.390082 | 7.2:-3912105 | MS.gene29352:CDS |
| TCTTTGAGGACGAGAATATT+CGG | 0.393562 | 7.2:+3912159 | None:intergenic |
| CAAAAGTAATGAACTCTTCT+GGG | 0.407006 | 7.2:-3912373 | MS.gene29352:CDS |
| ACTATGCTTGGTGTCGAACC+TGG | 0.407445 | 7.2:-3912501 | MS.gene29352:CDS |
| TAAAGATCACATCAAATTCA+TGG | 0.412175 | 7.2:-3912022 | MS.gene29352:CDS |
| AAATCACGCTCCTATGCAAT+TGG | 0.415021 | 7.2:-3913170 | MS.gene29352:CDS |
| CTTCTCTGATTTCTTAATCA+AGG | 0.416004 | 7.2:+3913238 | None:intergenic |
| CATAGAACTCCTTGTGATGT+TGG | 0.427764 | 7.2:-3911466 | MS.gene29352:CDS |
| CCTCGTCATTGTTCAGATCA+TGG | 0.433562 | 7.2:-3911247 | MS.gene29352:CDS |
| TTCAATTCCCTTAGATCAGA+TGG | 0.449915 | 7.2:+3911967 | None:intergenic |
| AATCTGATGGATTTCGTAGA+TGG | 0.452593 | 7.2:-3912995 | MS.gene29352:CDS |
| ATGGATCATGCGTCTTATGA+AGG | 0.458560 | 7.2:-3913311 | MS.gene29352:CDS |
| TAGTTCATGTTGCCTTGGTC+CGG | 0.458759 | 7.2:+3912917 | None:intergenic |
| TCATGAGCCAAACTGGCATC+AGG | 0.465831 | 7.2:+3911997 | None:intergenic |
| AAAGATTCATTGAGAACAAA+GGG | 0.468914 | 7.2:-3913058 | MS.gene29352:CDS |
| AGCAAGGATTAAGATGATCT+TGG | 0.470445 | 7.2:+3911302 | None:intergenic |
| AAGGGAGAAAATGTATGATT+GGG | 0.474008 | 7.2:-3912953 | MS.gene29352:CDS |
| TCCAATGCTCTAACTGTCAA+TGG | 0.474242 | 7.2:+3911388 | None:intergenic |
| AATGGTGGAAGAAGCCAAGC+AGG | 0.474606 | 7.2:-3911548 | MS.gene29352:CDS |
| TCCTTGTGATGTTGGTTCGT+TGG | 0.475667 | 7.2:-3911458 | MS.gene29352:CDS |
| TCTTCTTTGAAGTTAACTGT+TGG | 0.479265 | 7.2:-3912576 | MS.gene29352:CDS |
| CTCGTCATTGTTCAGATCAT+GGG | 0.487535 | 7.2:-3911246 | MS.gene29352:CDS |
| TCTGATTTCTTAATCAAGGA+AGG | 0.491698 | 7.2:+3913242 | None:intergenic |
| CTTGAATCGAGTCCTCGAAT+AGG | 0.496723 | 7.2:-3913287 | MS.gene29352:CDS |
| CTATTCGAGGACTCGATTCA+AGG | 0.497921 | 7.2:+3913288 | None:intergenic |
| ACCATTGACAGTTAGAGCAT+TGG | 0.500083 | 7.2:-3911389 | MS.gene29352:CDS |
| GATATATTACAATCTTTGAC+AGG | 0.500185 | 7.2:-3912417 | MS.gene29352:CDS |
| TGCTGCAAGGATTGTAAAAG+AGG | 0.501061 | 7.2:-3911283 | MS.gene29352:CDS |
| AAGGGAGACCTTACTATGCT+TGG | 0.508646 | 7.2:-3912513 | MS.gene29352:CDS |
| TGGTATTCCGGACCTATTCG+AGG | 0.509678 | 7.2:+3913275 | None:intergenic |
| GTTCGACACCAAGCATAGTA+AGG | 0.513375 | 7.2:+3912505 | None:intergenic |
| CGGAGTGCATGAAGTTAAAA+GGG | 0.513886 | 7.2:-3912971 | MS.gene29352:CDS |
| TTCATTGAGAACAAAGGGAT+GGG | 0.514764 | 7.2:-3913053 | MS.gene29352:CDS |
| TCGAATAGGTCCGGAATACC+AGG | 0.518214 | 7.2:-3913273 | MS.gene29352:CDS |
| CGCTAACTGAATCAAAGTAA+TGG | 0.519124 | 7.2:+3912208 | None:intergenic |
| AACGTCCGACTGTTCTTCCC+AGG | 0.523209 | 7.2:+3912483 | None:intergenic |
| CTTGAAAACTTCTCAACACC+GGG | 0.523734 | 7.2:+3912252 | None:intergenic |
| CAATGAGGAAGAGATAGAAA+AGG | 0.526578 | 7.2:-3912115 | MS.gene29352:CDS |
| GATAATAGTTCATGTTGCCT+TGG | 0.527370 | 7.2:+3912912 | None:intergenic |
| ATCGAGTCCTCGAATAGGTC+CGG | 0.527806 | 7.2:-3913282 | MS.gene29352:CDS |
| AATGAGGAAGAGATAGAAAA+GGG | 0.530032 | 7.2:-3912114 | MS.gene29352:CDS |
| CTTGTGGAAGCAGTAGGGAT+TGG | 0.530676 | 7.2:-3912543 | MS.gene29352:CDS |
| ATCGCTCCATGTTTCTGACA+TGG | 0.531800 | 7.2:+3913142 | None:intergenic |
| CGCGCTTACTAGCAAGAGGA+TGG | 0.533696 | 7.2:-3912338 | MS.gene29352:CDS |
| TGTTGGAATAAACGTTCTTG+TGG | 0.536729 | 7.2:-3912559 | MS.gene29352:CDS |
| AAAAGATTCATTGAGAACAA+AGG | 0.544303 | 7.2:-3913059 | MS.gene29352:CDS |
| AGTAGGGATTGGTAACAAGA+AGG | 0.546680 | 7.2:-3912532 | MS.gene29352:CDS |
| CGGAAAGCCATCTGATCTAA+GGG | 0.547174 | 7.2:-3911974 | MS.gene29352:CDS |
| TCAGCAGGATTCATTTGAAG+TGG | 0.550741 | 7.2:+3913212 | None:intergenic |
| GTAGGGATTGGTAACAAGAA+GGG | 0.553888 | 7.2:-3912531 | MS.gene29352:CDS |
| AGAAGCCAAGCAGGGCGTAA+AGG | 0.554185 | 7.2:-3911539 | MS.gene29352:CDS |
| AACGTTCTTGTGGAAGCAGT+AGG | 0.554364 | 7.2:-3912549 | MS.gene29352:CDS |
| TGTCTCCTTGGATTTAGATG+AGG | 0.555499 | 7.2:+3911427 | None:intergenic |
| TCAGTTAGTCATCAGCAGAA+TGG | 0.556880 | 7.2:-3911745 | MS.gene29352:CDS |
| TCAAGGAAGGAATTTCCGCC+TGG | 0.558314 | 7.2:+3913255 | None:intergenic |
| AATTCTTGCATGTGCCAAAG+AGG | 0.562079 | 7.2:-3911351 | MS.gene29352:CDS |
| TCAAGGAGAAAACTAGTGAA+AGG | 0.565642 | 7.2:-3912234 | MS.gene29352:CDS |
| CCTTGAAAACTTCTCAACAC+CGG | 0.567703 | 7.2:+3912251 | None:intergenic |
| AACAGCCTCATCTAAATCCA+AGG | 0.573780 | 7.2:-3911432 | MS.gene29352:CDS |
| ACGTTCTTGTGGAAGCAGTA+GGG | 0.575109 | 7.2:-3912548 | MS.gene29352:CDS |
| AAAGTTGATGTAGATGCTGC+TGG | 0.579391 | 7.2:-3911919 | MS.gene29352:CDS |
| TGAATAACAGATGCGAGACA+TGG | 0.579514 | 7.2:+3911508 | None:intergenic |
| ATCGAGGCTTGAGGTAACAT+TGG | 0.580406 | 7.2:+3912058 | None:intergenic |
| CAGCAGGATTCATTTGAAGT+GGG | 0.580828 | 7.2:+3913213 | None:intergenic |
| CAGATAAACTAGGATTCTCT+CGG | 0.581610 | 7.2:-3911807 | MS.gene29352:CDS |
| TCATTGAGAACAAAGGGATG+GGG | 0.582098 | 7.2:-3913052 | MS.gene29352:CDS |
| CTATGCTTGGTGTCGAACCT+GGG | 0.583951 | 7.2:-3912500 | MS.gene29352:CDS |
| AAGTAGAAAACATCTTGTAT+CGG | 0.587062 | 7.2:+3913118 | None:intergenic |
| TTTCAGCATTAACATACCGC+AGG | 0.591478 | 7.2:-3911605 | MS.gene29352:CDS |
| ACAAAGTTGACAGATAAACT+AGG | 0.593475 | 7.2:-3911817 | MS.gene29352:CDS |
| TCATCTTAATCCTTGCTGCA+AGG | 0.595537 | 7.2:-3911296 | MS.gene29352:CDS |
| TGGCCGCGCTTACTAGCAAG+AGG | 0.599467 | 7.2:-3912342 | MS.gene29352:CDS |
| TCGCTCCATGTTTCTGACAT+GGG | 0.605733 | 7.2:+3913143 | None:intergenic |
| ACATCACAAGGAGTTCTATG+AGG | 0.607726 | 7.2:+3911469 | None:intergenic |
| GAGGAAAGTAAATCATAGCA+AGG | 0.608929 | 7.2:-3911869 | MS.gene29352:CDS |
| ATTCATTGAGAACAAAGGGA+TGG | 0.610344 | 7.2:-3913054 | MS.gene29352:CDS |
| GTTTACCCATGTCAGAAACA+TGG | 0.611769 | 7.2:-3913148 | MS.gene29352:CDS |
| CATGGGTAAACCAATTGCAT+AGG | 0.615617 | 7.2:+3913160 | None:intergenic |
| ATATTACAATCTTTGACAGG+AGG | 0.616161 | 7.2:-3912414 | MS.gene29352:CDS |
| TGATGGATTTCGTAGATGGT+CGG | 0.616885 | 7.2:-3912991 | MS.gene29352:CDS |
| TGAGATTCTTCAGATACATG+TGG | 0.619350 | 7.2:+3912879 | None:intergenic |
| GTTTCTAAGTCATACGTGGA+AGG | 0.621769 | 7.2:-3912624 | MS.gene29352:CDS |
| CATTGAGAACAAAGGGATGG+GGG | 0.623590 | 7.2:-3913051 | MS.gene29352:CDS |
| AAGTAGAAGATCGAGGCTTG+AGG | 0.632017 | 7.2:+3912049 | None:intergenic |
| GATGCCAGTTTGGCTCATGA+CGG | 0.633667 | 7.2:-3911994 | MS.gene29352:CDS |
| TTCTTCAGCAAACAGAAATG+TGG | 0.638197 | 7.2:-3911710 | MS.gene29352:CDS |
| CATCCTCTTGCTAGTAAGCG+CGG | 0.640385 | 7.2:+3912339 | None:intergenic |
| ATGGTGGAAGAAGCCAAGCA+GGG | 0.647614 | 7.2:-3911547 | MS.gene29352:CDS |
| CTCAAAGAAGAAGAAGCAGT+CGG | 0.649922 | 7.2:-3912144 | MS.gene29352:CDS |
| TCGAACCTGGGAAGAACAGT+CGG | 0.651934 | 7.2:-3912488 | MS.gene29352:CDS |
| TCCAACGAACCAACATCACA+AGG | 0.651942 | 7.2:+3911457 | None:intergenic |
| AGCAGTCGGTAGCTGCAATG+AGG | 0.651991 | 7.2:-3912130 | MS.gene29352:CDS |
| TGTTATTCAAGAAATAGTTG+AGG | 0.663616 | 7.2:-3911494 | MS.gene29352:CDS |
| AAAGATTGTAATATATCACT+CGG | 0.663784 | 7.2:+3912423 | None:intergenic |
| TCAGAATTCGAAGGAACCTG+CGG | 0.671588 | 7.2:+3911589 | None:intergenic |
| CCATGATCTGAACAATGACG+AGG | 0.689949 | 7.2:+3911247 | None:intergenic |
| TCTGAGCAAACAAAGTATCG+AGG | 0.704395 | 7.2:-3912312 | MS.gene29352:CDS |
| TCAGGTTTCTAAGTCATACG+TGG | 0.707620 | 7.2:-3912628 | MS.gene29352:intron |
| TTACTGTAAGTAGAAGATCG+AGG | 0.716574 | 7.2:+3912042 | None:intergenic |
| ATAAAGGGCACAAATATACG+AGG | 0.729913 | 7.2:-3911888 | MS.gene29352:CDS |
| AATAGGTCCGGAATACCAGG+CGG | 0.777984 | 7.2:-3913270 | MS.gene29352:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAATAATTTCATTTTACTA+TGG | - | chr7.2:3911546-3911565 | MS.gene29352:CDS | 15.0% |
| !!! | GAATTATAATGATATTTTCA+TGG | - | chr7.2:3911245-3911264 | MS.gene29352:CDS | 15.0% |
| !!! | TACTTAGTTTGTTTATTTTT+GGG | - | chr7.2:3911475-3911494 | MS.gene29352:CDS | 15.0% |
| !! | AAAGATTGTAATATATCACT+CGG | + | chr7.2:3912155-3912174 | None:intergenic | 20.0% |
| !! | ACCTAATAAAGAAATAAGAT+GGG | + | chr7.2:3911760-3911779 | None:intergenic | 20.0% |
| !!! | CTACTTAGTTTGTTTATTTT+TGG | - | chr7.2:3911474-3911493 | MS.gene29352:CDS | 20.0% |
| !!! | TAAAGAAAAAAGTACTGATA+CGG | + | chr7.2:3911881-3911900 | None:intergenic | 20.0% |
| !!! | TTCTGAAAATAGAAAAATGA+TGG | - | chr7.2:3913003-3913022 | MS.gene29352:CDS | 20.0% |
| ! | AAAAGATTCATTGAGAACAA+AGG | - | chr7.2:3911516-3911535 | MS.gene29352:CDS | 25.0% |
| ! | AAAGATTCATTGAGAACAAA+GGG | - | chr7.2:3911517-3911536 | MS.gene29352:CDS | 25.0% |
| ! | AAATAGAAAAATGATGGCAA+TGG | - | chr7.2:3913009-3913028 | MS.gene29352:CDS | 25.0% |
| ! | AAGTAGAAAACATCTTGTAT+CGG | + | chr7.2:3911460-3911479 | None:intergenic | 25.0% |
| ! | AATAAAGAAATAAGATGGGA+TGG | + | chr7.2:3911756-3911775 | None:intergenic | 25.0% |
| ! | ACTTTACTCACTGAATTAAT+AGG | + | chr7.2:3912641-3912660 | None:intergenic | 25.0% |
| ! | ATAAAGAAATAAGATGGGAT+GGG | + | chr7.2:3911755-3911774 | None:intergenic | 25.0% |
| ! | CACCTAATAAAGAAATAAGA+TGG | + | chr7.2:3911761-3911780 | None:intergenic | 25.0% |
| ! | CTGCTGGTAAAAAATATAAA+GGG | - | chr7.2:3912672-3912691 | MS.gene29352:intron | 25.0% |
| ! | GATATATTACAATCTTTGAC+AGG | - | chr7.2:3912158-3912177 | MS.gene29352:CDS | 25.0% |
| ! | TAAAGATCACATCAAATTCA+TGG | - | chr7.2:3912553-3912572 | MS.gene29352:CDS | 25.0% |
| ! | TAACTGAACCACAAAAAATT+TGG | + | chr7.2:3912817-3912836 | None:intergenic | 25.0% |
| ! | TGTTATTCAAGAAATAGTTG+AGG | - | chr7.2:3913081-3913100 | MS.gene29352:CDS | 25.0% |
| !! | TCCCATCTTATTTCTTTATT+AGG | - | chr7.2:3911756-3911775 | MS.gene29352:CDS | 25.0% |
| !! | TTTCTATTTTCAGAATTCGA+AGG | + | chr7.2:3912998-3913017 | None:intergenic | 25.0% |
| !!! | AAAGAAAAAAGTACTGATAC+GGG | + | chr7.2:3911880-3911899 | None:intergenic | 25.0% |
| AAAAACCAGATAATCATCAG+AGG | + | chr7.2:3912297-3912316 | None:intergenic | 30.0% | |
| AAAGGGAGAAAATGTATGAT+TGG | - | chr7.2:3911621-3911640 | MS.gene29352:CDS | 30.0% | |
| AAGGGAGAAAATGTATGATT+GGG | - | chr7.2:3911622-3911641 | MS.gene29352:CDS | 30.0% | |
| AATGAGGAAGAGATAGAAAA+GGG | - | chr7.2:3912461-3912480 | MS.gene29352:CDS | 30.0% | |
| ACAAAGTTGACAGATAAACT+AGG | - | chr7.2:3912758-3912777 | MS.gene29352:intron | 30.0% | |
| ATATTACAATCTTTGACAGG+AGG | - | chr7.2:3912161-3912180 | MS.gene29352:CDS | 30.0% | |
| ATCTCAAGATTCTTTGTTAC+AGG | - | chr7.2:3911713-3911732 | MS.gene29352:CDS | 30.0% | |
| CAAAAGTAATGAACTCTTCT+GGG | - | chr7.2:3912202-3912221 | MS.gene29352:CDS | 30.0% | |
| CTTCTCTGATTTCTTAATCA+AGG | + | chr7.2:3911340-3911359 | None:intergenic | 30.0% | |
| GCTGCTGGTAAAAAATATAA+AGG | - | chr7.2:3912671-3912690 | MS.gene29352:intron | 30.0% | |
| TAACAAATACAAGCAAAGTG+AGG | + | chr7.2:3911924-3911943 | None:intergenic | 30.0% | |
| TACTCCATTGTAATTACCAT+TGG | + | chr7.2:3911803-3911822 | None:intergenic | 30.0% | |
| TCTGATTTCTTAATCAAGGA+AGG | + | chr7.2:3911336-3911355 | None:intergenic | 30.0% | |
| ! | ATTGGGAAGAAACTTTTTAC+CGG | - | chr7.2:3911639-3911658 | MS.gene29352:CDS | 30.0% |
| ! | GGAAAGTTTTACAAATCTGA+TGG | - | chr7.2:3911567-3911586 | MS.gene29352:CDS | 30.0% |
| ! | TGAAAATCTTTTGAATCAGC+AGG | + | chr7.2:3911381-3911400 | None:intergenic | 30.0% |
| !! | TCTTCTTTGAAGTTAACTGT+TGG | - | chr7.2:3911999-3912018 | MS.gene29352:CDS | 30.0% |
| !! | TGCTTGTATTTGTTATACTC+AGG | - | chr7.2:3911929-3911948 | MS.gene29352:CDS | 30.0% |
| !!! | GATGCTAACCAAATTTTTTG+TGG | - | chr7.2:3912806-3912825 | MS.gene29352:intron | 30.0% |
| !!! | TATCTGGTTTTTCTTATTCC+CGG | - | chr7.2:3912305-3912324 | MS.gene29352:CDS | 30.0% |
| AATCTTTGACAGGAGGATTT+CGG | - | chr7.2:3912168-3912187 | MS.gene29352:CDS | 35.0% | |
| AGCAAGGATTAAGATGATCT+TGG | + | chr7.2:3913276-3913295 | None:intergenic | 35.0% | |
| AGTGCCAATGGTAATTACAA+TGG | - | chr7.2:3911796-3911815 | MS.gene29352:CDS | 35.0% | |
| ATTCATTGAGAACAAAGGGA+TGG | - | chr7.2:3911521-3911540 | MS.gene29352:CDS | 35.0% | |
| CAATGAGGAAGAGATAGAAA+AGG | - | chr7.2:3912460-3912479 | MS.gene29352:CDS | 35.0% | |
| CAGATAAACTAGGATTCTCT+CGG | - | chr7.2:3912768-3912787 | MS.gene29352:intron | 35.0% | |
| CCAAAAGTAATGAACTCTTC+TGG | - | chr7.2:3912201-3912220 | MS.gene29352:CDS | 35.0% | |
| CGCTAACTGAATCAAAGTAA+TGG | + | chr7.2:3912370-3912389 | None:intergenic | 35.0% | |
| GAGATAGAAAAGGGATCAAA+TGG | - | chr7.2:3912470-3912489 | MS.gene29352:CDS | 35.0% | |
| GAGGAAAGTAAATCATAGCA+AGG | - | chr7.2:3912706-3912725 | MS.gene29352:intron | 35.0% | |
| GATAATAGTTCATGTTGCCT+TGG | + | chr7.2:3911666-3911685 | None:intergenic | 35.0% | |
| TAGAAAAATGATGGCAATGG+TGG | - | chr7.2:3913012-3913031 | MS.gene29352:CDS | 35.0% | |
| TCAAGGAGAAAACTAGTGAA+AGG | - | chr7.2:3912341-3912360 | MS.gene29352:CDS | 35.0% | |
| TGAGATTCTTCAGATACATG+TGG | + | chr7.2:3911699-3911718 | None:intergenic | 35.0% | |
| TGCAAAACTTTGTCTTCTCT+TGG | - | chr7.2:3912128-3912147 | MS.gene29352:CDS | 35.0% | |
| TGTTACCTCTGATGATTATC+TGG | - | chr7.2:3912289-3912308 | MS.gene29352:CDS | 35.0% | |
| TGTTGGAATAAACGTTCTTG+TGG | - | chr7.2:3912016-3912035 | MS.gene29352:CDS | 35.0% | |
| TTACTGTAAGTAGAAGATCG+AGG | + | chr7.2:3912536-3912555 | None:intergenic | 35.0% | |
| TTCAATTCCCTTAGATCAGA+TGG | + | chr7.2:3912611-3912630 | None:intergenic | 35.0% | |
| TTCATTGAGAACAAAGGGAT+GGG | - | chr7.2:3911522-3911541 | MS.gene29352:CDS | 35.0% | |
| TTCTTCAGCAAACAGAAATG+TGG | - | chr7.2:3912865-3912884 | MS.gene29352:CDS | 35.0% | |
| ! | ATAAAGGGCACAAATATACG+AGG | - | chr7.2:3912687-3912706 | MS.gene29352:intron | 35.0% |
| ! | CCAGAAGAGTTCATTACTTT+TGG | + | chr7.2:3912204-3912223 | None:intergenic | 35.0% |
| ! | GAAGACAAAGTTTTGCAAGT+TGG | + | chr7.2:3912125-3912144 | None:intergenic | 35.0% |
| ! | TCTTTGAGGACGAGAATATT+CGG | + | chr7.2:3912419-3912438 | None:intergenic | 35.0% |
| !! | AATCTGATGGATTTCGTAGA+TGG | - | chr7.2:3911580-3911599 | MS.gene29352:CDS | 35.0% |
| !!! | TCTTTCCTTTTTTGCCTCTT+TGG | + | chr7.2:3913241-3913260 | None:intergenic | 35.0% |
| AAATCACGCTCCTATGCAAT+TGG | - | chr7.2:3911405-3911424 | MS.gene29352:CDS | 40.0% | |
| AACAGCCTCATCTAAATCCA+AGG | - | chr7.2:3913143-3913162 | MS.gene29352:CDS | 40.0% | |
| AATTCTTGCATGTGCCAAAG+AGG | - | chr7.2:3913224-3913243 | MS.gene29352:CDS | 40.0% | |
| ACATCACAAGGAGTTCTATG+AGG | + | chr7.2:3913109-3913128 | None:intergenic | 40.0% | |
| ACCATTGACAGTTAGAGCAT+TGG | - | chr7.2:3913186-3913205 | MS.gene29352:CDS | 40.0% | |
| AGAAATAAGATGGGATGGGA+TGG | + | chr7.2:3911751-3911770 | None:intergenic | 40.0% | |
| ATGGATCATGCGTCTTATGA+AGG | - | chr7.2:3911264-3911283 | MS.gene29352:CDS | 40.0% | |
| ATGTGCCAAAGAGGCAAAAA+AGG | - | chr7.2:3913233-3913252 | MS.gene29352:CDS | 40.0% | |
| CATAGAACTCCTTGTGATGT+TGG | - | chr7.2:3913109-3913128 | MS.gene29352:CDS | 40.0% | |
| CATGGGTAAACCAATTGCAT+AGG | + | chr7.2:3911418-3911437 | None:intergenic | 40.0% | |
| CCTTGAAAACTTCTCAACAC+CGG | + | chr7.2:3912327-3912346 | None:intergenic | 40.0% | |
| CGGAGTGCATGAAGTTAAAA+GGG | - | chr7.2:3911604-3911623 | MS.gene29352:CDS | 40.0% | |
| CTCAAAGAAGAAGAAGCAGT+CGG | - | chr7.2:3912431-3912450 | MS.gene29352:CDS | 40.0% | |
| CTCGTCATTGTTCAGATCAT+GGG | - | chr7.2:3913329-3913348 | MS.gene29352:CDS | 40.0% | |
| CTTGAAAACTTCTCAACACC+GGG | + | chr7.2:3912326-3912345 | None:intergenic | 40.0% | |
| GTTTACCCATGTCAGAAACA+TGG | - | chr7.2:3911427-3911446 | MS.gene29352:CDS | 40.0% | |
| GTTTCTAAGTCATACGTGGA+AGG | - | chr7.2:3911951-3911970 | MS.gene29352:CDS | 40.0% | |
| TCAGCAGGATTCATTTGAAG+TGG | + | chr7.2:3911366-3911385 | None:intergenic | 40.0% | |
| TCAGGTTTCTAAGTCATACG+TGG | - | chr7.2:3911947-3911966 | MS.gene29352:CDS | 40.0% | |
| TCAGTTAGTCATCAGCAGAA+TGG | - | chr7.2:3912830-3912849 | MS.gene29352:intron | 40.0% | |
| TCATCTTAATCCTTGCTGCA+AGG | - | chr7.2:3913279-3913298 | MS.gene29352:CDS | 40.0% | |
| TCATTGAGAACAAAGGGATG+GGG | - | chr7.2:3911523-3911542 | MS.gene29352:CDS | 40.0% | |
| TCCAATGCTCTAACTGTCAA+TGG | + | chr7.2:3913190-3913209 | None:intergenic | 40.0% | |
| TCGGAGTGCATGAAGTTAAA+AGG | - | chr7.2:3911603-3911622 | MS.gene29352:CDS | 40.0% | |
| TGAATAACAGATGCGAGACA+TGG | + | chr7.2:3913070-3913089 | None:intergenic | 40.0% | |
| TGCTGCAAGGATTGTAAAAG+AGG | - | chr7.2:3913292-3913311 | MS.gene29352:CDS | 40.0% | |
| TGTCTCCTTGGATTTAGATG+AGG | + | chr7.2:3913151-3913170 | None:intergenic | 40.0% | |
| TTTCAGCATTAACATACCGC+AGG | - | chr7.2:3912970-3912989 | MS.gene29352:CDS | 40.0% | |
| TTTCTATTGCTCTGTCTCCT+TGG | + | chr7.2:3913163-3913182 | None:intergenic | 40.0% | |
| ! | AGAAACTTTTTACCGGACCA+AGG | - | chr7.2:3911646-3911665 | MS.gene29352:CDS | 40.0% |
| ! | AGTAGGGATTGGTAACAAGA+AGG | - | chr7.2:3912043-3912062 | MS.gene29352:CDS | 40.0% |
| ! | CAGCAGGATTCATTTGAAGT+GGG | + | chr7.2:3911365-3911384 | None:intergenic | 40.0% |
| ! | CTTTTACAATCCTTGCAGCA+AGG | + | chr7.2:3913292-3913311 | None:intergenic | 40.0% |
| ! | GTAGGGATTGGTAACAAGAA+GGG | - | chr7.2:3912044-3912063 | MS.gene29352:CDS | 40.0% |
| ! | TAAGATGATCTTGGTGTGTC+TGG | + | chr7.2:3913267-3913286 | None:intergenic | 40.0% |
| !! | AAAGTTGATGTAGATGCTGC+TGG | - | chr7.2:3912656-3912675 | MS.gene29352:intron | 40.0% |
| !! | TCTGAGCAAACAAAGTATCG+AGG | - | chr7.2:3912263-3912282 | MS.gene29352:CDS | 40.0% |
| !! | TGATGGATTTCGTAGATGGT+CGG | - | chr7.2:3911584-3911603 | MS.gene29352:CDS | 40.0% |
| !!! | TGTGCTTTTGATAGTGCCAA+TGG | - | chr7.2:3911784-3911803 | MS.gene29352:CDS | 40.0% |
| AACGTTCTTGTGGAAGCAGT+AGG | - | chr7.2:3912026-3912045 | MS.gene29352:CDS | 45.0% | |
| AAGGGAGACCTTACTATGCT+TGG | - | chr7.2:3912062-3912081 | MS.gene29352:CDS | 45.0% | |
| AAGTAGAAGATCGAGGCTTG+AGG | + | chr7.2:3912529-3912548 | None:intergenic | 45.0% | |
| ACGGAAAGCCATCTGATCTA+AGG | - | chr7.2:3912600-3912619 | MS.gene29352:CDS | 45.0% | |
| ACGTTCTTGTGGAAGCAGTA+GGG | - | chr7.2:3912027-3912046 | MS.gene29352:CDS | 45.0% | |
| ATCGAGGCTTGAGGTAACAT+TGG | + | chr7.2:3912520-3912539 | None:intergenic | 45.0% | |
| CATTGAGAACAAAGGGATGG+GGG | - | chr7.2:3911524-3911543 | MS.gene29352:CDS | 45.0% | |
| CCATGATCTGAACAATGACG+AGG | + | chr7.2:3913331-3913350 | None:intergenic | 45.0% | |
| CCTCGTCATTGTTCAGATCA+TGG | - | chr7.2:3913328-3913347 | MS.gene29352:CDS | 45.0% | |
| CGACTGCTTCTTCTTCTTTG+AGG | + | chr7.2:3912433-3912452 | None:intergenic | 45.0% | |
| CGGAAAGCCATCTGATCTAA+GGG | - | chr7.2:3912601-3912620 | MS.gene29352:CDS | 45.0% | |
| CTATTCGAGGACTCGATTCA+AGG | + | chr7.2:3911290-3911309 | None:intergenic | 45.0% | |
| CTTGAATCGAGTCCTCGAAT+AGG | - | chr7.2:3911288-3911307 | MS.gene29352:CDS | 45.0% | |
| GTTCGACACCAAGCATAGTA+AGG | + | chr7.2:3912073-3912092 | None:intergenic | 45.0% | |
| TAGTTCATGTTGCCTTGGTC+CGG | + | chr7.2:3911661-3911680 | None:intergenic | 45.0% | |
| TCAGAATTCGAAGGAACCTG+CGG | + | chr7.2:3912989-3913008 | None:intergenic | 45.0% | |
| TCCAACGAACCAACATCACA+AGG | + | chr7.2:3913121-3913140 | None:intergenic | 45.0% | |
| ! | AACTCTTCTGGGAAGCTGTT+TGG | - | chr7.2:3912213-3912232 | MS.gene29352:CDS | 45.0% |
| ! | ATCGCTCCATGTTTCTGACA+TGG | + | chr7.2:3911436-3911455 | None:intergenic | 45.0% |
| ! | TCGCTCCATGTTTCTGACAT+GGG | + | chr7.2:3911435-3911454 | None:intergenic | 45.0% |
| !! | CCGGTGTTGAGAAGTTTTCA+AGG | - | chr7.2:3912324-3912343 | MS.gene29352:CDS | 45.0% |
| !! | TCCTTGTGATGTTGGTTCGT+TGG | - | chr7.2:3913117-3913136 | MS.gene29352:CDS | 45.0% |
| AATAGGTCCGGAATACCAGG+CGG | - | chr7.2:3911305-3911324 | MS.gene29352:CDS | 50.0% | |
| ATCGAGTCCTCGAATAGGTC+CGG | - | chr7.2:3911293-3911312 | MS.gene29352:CDS | 50.0% | |
| CATCCTCTTGCTAGTAAGCG+CGG | + | chr7.2:3912239-3912258 | None:intergenic | 50.0% | |
| CATGGTTCCTGATGCCAGTT+TGG | - | chr7.2:3912571-3912590 | MS.gene29352:CDS | 50.0% | |
| CTTGTGGAAGCAGTAGGGAT+TGG | - | chr7.2:3912032-3912051 | MS.gene29352:CDS | 50.0% | |
| CTTTCCGTCATGAGCCAAAC+TGG | + | chr7.2:3912588-3912607 | None:intergenic | 50.0% | |
| GGAATTTCCGCCTGGTATTC+CGG | + | chr7.2:3911315-3911334 | None:intergenic | 50.0% | |
| TCAAGGAAGGAATTTCCGCC+TGG | + | chr7.2:3911323-3911342 | None:intergenic | 50.0% | |
| TCATGAGCCAAACTGGCATC+AGG | + | chr7.2:3912581-3912600 | None:intergenic | 50.0% | |
| TCGAACCTGGGAAGAACAGT+CGG | - | chr7.2:3912087-3912106 | MS.gene29352:CDS | 50.0% | |
| TCGAATAGGTCCGGAATACC+AGG | - | chr7.2:3911302-3911321 | MS.gene29352:CDS | 50.0% | |
| TGGTATTCCGGACCTATTCG+AGG | + | chr7.2:3911303-3911322 | None:intergenic | 50.0% | |
| ! | AATGGTGGAAGAAGCCAAGC+AGG | - | chr7.2:3913027-3913046 | MS.gene29352:CDS | 50.0% |
| ! | ATGGTGGAAGAAGCCAAGCA+GGG | - | chr7.2:3913028-3913047 | MS.gene29352:CDS | 50.0% |
| ! | GATGCCAGTTTGGCTCATGA+CGG | - | chr7.2:3912581-3912600 | MS.gene29352:CDS | 50.0% |
| ! | TTTTGCCTTTACGCCCTGCT+TGG | + | chr7.2:3913044-3913063 | None:intergenic | 50.0% |
| !! | ACTATGCTTGGTGTCGAACC+TGG | - | chr7.2:3912074-3912093 | MS.gene29352:CDS | 50.0% |
| !! | CTATGCTTGGTGTCGAACCT+GGG | - | chr7.2:3912075-3912094 | MS.gene29352:CDS | 50.0% |
| AACGTCCGACTGTTCTTCCC+AGG | + | chr7.2:3912095-3912114 | None:intergenic | 55.0% | |
| AGAAGCCAAGCAGGGCGTAA+AGG | - | chr7.2:3913036-3913055 | MS.gene29352:CDS | 55.0% | |
| AGCAGTCGGTAGCTGCAATG+AGG | - | chr7.2:3912445-3912464 | MS.gene29352:CDS | 55.0% | |
| CGCGCTTACTAGCAAGAGGA+TGG | - | chr7.2:3912237-3912256 | MS.gene29352:CDS | 55.0% | |
| TGGCCGCGCTTACTAGCAAG+AGG | - | chr7.2:3912233-3912252 | MS.gene29352:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 3911228 | 3913369 | 3911228 | ID=MS.gene29352 |
| chr7.2 | mRNA | 3911228 | 3913369 | 3911228 | ID=MS.gene29352.t1;Parent=MS.gene29352 |
| chr7.2 | exon | 3912863 | 3913369 | 3912863 | ID=MS.gene29352.t1.exon1;Parent=MS.gene29352.t1 |
| chr7.2 | CDS | 3912863 | 3913369 | 3912863 | ID=cds.MS.gene29352.t1;Parent=MS.gene29352.t1 |
| chr7.2 | exon | 3911228 | 3912646 | 3911228 | ID=MS.gene29352.t1.exon2;Parent=MS.gene29352.t1 |
| chr7.2 | CDS | 3911228 | 3912646 | 3911228 | ID=cds.MS.gene29352.t1;Parent=MS.gene29352.t1 |
| Gene Sequence |
| Protein sequence |
