Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40031.t1 | XP_003590737.1 | 92.2 | 217 | 16 | 1 | 1 | 217 | 93 | 308 | 2.40E-82 | 315.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40031.t1 | G7I2Q0 | 92.2 | 217 | 16 | 1 | 1 | 217 | 93 | 308 | 1.7e-82 | 315.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene40031 | 0.801374 | 9.28E-49 | -1.69E-46 |
| MS.gene049230 | MS.gene40031 | 0.841622 | 4.25E-58 | -1.69E-46 |
| MS.gene04933 | MS.gene40031 | 0.807034 | 6.16E-50 | -1.69E-46 |
| MS.gene049378 | MS.gene40031 | 0.866114 | 3.61E-65 | -1.69E-46 |
| MS.gene049669 | MS.gene40031 | 0.809814 | 1.57E-50 | -1.69E-46 |
| MS.gene050226 | MS.gene40031 | 0.821486 | 3.94E-53 | -1.69E-46 |
| MS.gene050227 | MS.gene40031 | 0.829417 | 5.21E-55 | -1.69E-46 |
| MS.gene050228 | MS.gene40031 | 0.835635 | 1.50E-56 | -1.69E-46 |
| MS.gene050330 | MS.gene40031 | -0.818276 | 2.13E-52 | -1.69E-46 |
| MS.gene050426 | MS.gene40031 | -0.811811 | 5.81E-51 | -1.69E-46 |
| MS.gene050623 | MS.gene40031 | -0.816358 | 5.76E-52 | -1.69E-46 |
| MS.gene050642 | MS.gene40031 | 0.859445 | 4.12E-63 | -1.69E-46 |
| MS.gene050750 | MS.gene40031 | 0.85315 | 2.89E-61 | -1.69E-46 |
| MS.gene050787 | MS.gene40031 | 0.802648 | 5.08E-49 | -1.69E-46 |
| MS.gene050820 | MS.gene40031 | 0.817543 | 3.12E-52 | -1.69E-46 |
| MS.gene050953 | MS.gene40031 | 0.843238 | 1.58E-58 | -1.69E-46 |
| MS.gene051064 | MS.gene40031 | 0.840691 | 7.46E-58 | -1.69E-46 |
| MS.gene051208 | MS.gene40031 | 0.820449 | 6.82E-53 | -1.69E-46 |
| MS.gene051257 | MS.gene40031 | 0.800637 | 1.31E-48 | -1.69E-46 |
| MS.gene051370 | MS.gene40031 | 0.80167 | 8.07E-49 | -1.69E-46 |
| MS.gene051373 | MS.gene40031 | 0.818812 | 1.61E-52 | -1.69E-46 |
| MS.gene05137 | MS.gene40031 | 0.801222 | 9.97E-49 | -1.69E-46 |
| MS.gene051860 | MS.gene40031 | 0.806742 | 7.10E-50 | -1.69E-46 |
| MS.gene051983 | MS.gene40031 | 0.870642 | 1.25E-66 | -1.69E-46 |
| MS.gene052011 | MS.gene40031 | -0.818645 | 1.76E-52 | -1.69E-46 |
| MS.gene052077 | MS.gene40031 | 0.848497 | 5.90E-60 | -1.69E-46 |
| MS.gene052176 | MS.gene40031 | 0.880598 | 4.81E-70 | -1.69E-46 |
| MS.gene052190 | MS.gene40031 | 0.81469 | 1.36E-51 | -1.69E-46 |
| MS.gene052309 | MS.gene40031 | -0.844612 | 6.79E-59 | -1.69E-46 |
| MS.gene052333 | MS.gene40031 | 0.844745 | 6.25E-59 | -1.69E-46 |
| MS.gene052389 | MS.gene40031 | 0.872505 | 3.02E-67 | -1.69E-46 |
| MS.gene052586 | MS.gene40031 | 0.809922 | 1.49E-50 | -1.69E-46 |
| MS.gene052590 | MS.gene40031 | 0.806362 | 8.54E-50 | -1.69E-46 |
| MS.gene053330 | MS.gene40031 | 0.812049 | 5.15E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene40031 | 0.813075 | 3.07E-51 | -1.69E-46 |
| MS.gene054183 | MS.gene40031 | 0.820984 | 5.14E-53 | -1.69E-46 |
| MS.gene054291 | MS.gene40031 | -0.809447 | 1.88E-50 | -1.69E-46 |
| MS.gene054405 | MS.gene40031 | 0.839895 | 1.21E-57 | -1.69E-46 |
| MS.gene054468 | MS.gene40031 | 0.817996 | 2.47E-52 | -1.69E-46 |
| MS.gene054719 | MS.gene40031 | 0.817606 | 3.02E-52 | -1.69E-46 |
| MS.gene054930 | MS.gene40031 | 0.848391 | 6.31E-60 | -1.69E-46 |
| MS.gene054983 | MS.gene40031 | 0.823272 | 1.51E-53 | -1.69E-46 |
| MS.gene055217 | MS.gene40031 | 0.800325 | 1.52E-48 | -1.69E-46 |
| MS.gene055358 | MS.gene40031 | 0.802533 | 5.36E-49 | -1.69E-46 |
| MS.gene055367 | MS.gene40031 | 0.836414 | 9.49E-57 | -1.69E-46 |
| MS.gene05553 | MS.gene40031 | 0.849023 | 4.22E-60 | -1.69E-46 |
| MS.gene055701 | MS.gene40031 | 0.847531 | 1.09E-59 | -1.69E-46 |
| MS.gene05595 | MS.gene40031 | 0.823973 | 1.04E-53 | -1.69E-46 |
| MS.gene056087 | MS.gene40031 | 0.870261 | 1.67E-66 | -1.69E-46 |
| MS.gene056506 | MS.gene40031 | 0.837416 | 5.27E-57 | -1.69E-46 |
| MS.gene056723 | MS.gene40031 | 0.817067 | 4.00E-52 | -1.69E-46 |
| MS.gene056979 | MS.gene40031 | 0.859497 | 3.97E-63 | -1.69E-46 |
| MS.gene057156 | MS.gene40031 | -0.813325 | 2.71E-51 | -1.69E-46 |
| MS.gene057200 | MS.gene40031 | 0.801459 | 8.92E-49 | -1.69E-46 |
| MS.gene05761 | MS.gene40031 | 0.804547 | 2.05E-49 | -1.69E-46 |
| MS.gene057639 | MS.gene40031 | 0.813364 | 2.66E-51 | -1.69E-46 |
| MS.gene058139 | MS.gene40031 | 0.81076 | 9.82E-51 | -1.69E-46 |
| MS.gene058142 | MS.gene40031 | 0.844744 | 6.25E-59 | -1.69E-46 |
| MS.gene058498 | MS.gene40031 | 0.806494 | 8.01E-50 | -1.69E-46 |
| MS.gene058710 | MS.gene40031 | 0.826987 | 2.01E-54 | -1.69E-46 |
| MS.gene059247 | MS.gene40031 | 0.859095 | 5.24E-63 | -1.69E-46 |
| MS.gene059285 | MS.gene40031 | 0.816554 | 5.21E-52 | -1.69E-46 |
| MS.gene059511 | MS.gene40031 | 0.821957 | 3.06E-53 | -1.69E-46 |
| MS.gene059710 | MS.gene40031 | 0.818964 | 1.49E-52 | -1.69E-46 |
| MS.gene060683 | MS.gene40031 | 0.808575 | 2.90E-50 | -1.69E-46 |
| MS.gene060685 | MS.gene40031 | 0.801763 | 7.72E-49 | -1.69E-46 |
| MS.gene060879 | MS.gene40031 | 0.82448 | 7.89E-54 | -1.69E-46 |
| MS.gene061040 | MS.gene40031 | -0.864692 | 1.01E-64 | -1.69E-46 |
| MS.gene061114 | MS.gene40031 | -0.886606 | 2.95E-72 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40031.t1 | MTR_1g073230 | 94.361 | 266 | 14 | 1 | 1 | 266 | 93 | 357 | 0.0 | 518 |
| MS.gene40031.t1 | MTR_1g073230 | 53.153 | 111 | 51 | 1 | 31 | 140 | 266 | 376 | 1.66e-31 | 120 |
| MS.gene40031.t1 | MTR_7g098450 | 54.545 | 143 | 62 | 2 | 1 | 140 | 187 | 329 | 1.40e-37 | 135 |
| MS.gene40031.t1 | MTR_7g098450 | 60.000 | 90 | 34 | 1 | 179 | 266 | 221 | 310 | 1.04e-30 | 117 |
| MS.gene40031.t1 | MTR_7g098450 | 54.545 | 143 | 62 | 2 | 1 | 140 | 210 | 352 | 1.88e-37 | 135 |
| MS.gene40031.t1 | MTR_7g098450 | 60.000 | 90 | 34 | 1 | 179 | 266 | 244 | 333 | 1.43e-30 | 117 |
| MS.gene40031.t1 | MTR_7g099260 | 49.032 | 155 | 68 | 3 | 1 | 144 | 190 | 344 | 1.03e-36 | 133 |
| MS.gene40031.t1 | MTR_7g099260 | 64.634 | 82 | 29 | 0 | 185 | 266 | 240 | 321 | 2.84e-32 | 122 |
| MS.gene40031.t1 | MTR_4g114690 | 50.000 | 94 | 46 | 1 | 41 | 133 | 165 | 258 | 4.83e-23 | 95.9 |
| MS.gene40031.t1 | MTR_4g114690 | 43.137 | 102 | 57 | 1 | 165 | 266 | 146 | 246 | 3.57e-21 | 90.9 |
| MS.gene40031.t1 | MTR_2g103795 | 44.444 | 108 | 59 | 1 | 41 | 147 | 142 | 249 | 5.76e-23 | 95.1 |
| MS.gene40031.t1 | MTR_2g103795 | 42.045 | 88 | 50 | 1 | 179 | 266 | 137 | 223 | 6.34e-14 | 70.5 |
| MS.gene40031.t1 | MTR_4g010250 | 39.252 | 107 | 64 | 1 | 36 | 141 | 122 | 228 | 2.67e-20 | 87.4 |
| MS.gene40031.t1 | MTR_5g029910 | 43.158 | 95 | 53 | 1 | 41 | 134 | 125 | 219 | 1.59e-19 | 85.5 |
| MS.gene40031.t1 | MTR_5g029910 | 40.244 | 82 | 49 | 0 | 185 | 266 | 125 | 206 | 1.06e-15 | 75.1 |
| MS.gene40031.t1 | MTR_2g103795 | 42.045 | 88 | 50 | 1 | 179 | 266 | 137 | 223 | 4.47e-14 | 70.1 |
| MS.gene40031.t1 | MTR_2g103795 | 42.683 | 82 | 46 | 1 | 41 | 121 | 142 | 223 | 7.28e-14 | 69.3 |
| MS.gene40031.t1 | MTR_3g463450 | 28.148 | 135 | 89 | 1 | 132 | 266 | 357 | 483 | 3.61e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40031.t1 | AT1G04530 | 35.510 | 245 | 131 | 3 | 1 | 245 | 91 | 308 | 1.44e-38 | 137 |
| MS.gene40031.t1 | AT1G04530 | 46.067 | 89 | 47 | 1 | 178 | 266 | 117 | 204 | 8.02e-19 | 84.7 |
| MS.gene40031.t1 | AT1G04530 | 31.469 | 143 | 77 | 1 | 16 | 137 | 168 | 310 | 4.42e-13 | 68.2 |
| MS.gene40031.t1 | AT4G32340 | 44.000 | 100 | 54 | 2 | 37 | 134 | 109 | 208 | 1.56e-21 | 90.5 |
| MS.gene40031.t1 | AT1G80130 | 46.809 | 94 | 49 | 1 | 41 | 133 | 168 | 261 | 4.16e-21 | 90.9 |
| MS.gene40031.t1 | AT1G80130 | 41.111 | 90 | 52 | 1 | 177 | 266 | 161 | 249 | 9.01e-14 | 70.1 |
| MS.gene40031.t1 | AT4G17940 | 44.828 | 87 | 48 | 0 | 180 | 266 | 148 | 234 | 4.33e-21 | 90.1 |
| MS.gene40031.t1 | AT4G17940 | 39.423 | 104 | 62 | 1 | 33 | 135 | 145 | 248 | 1.36e-20 | 89.0 |
| MS.gene40031.t1 | AT5G20190 | 42.424 | 99 | 56 | 1 | 37 | 134 | 155 | 253 | 3.96e-19 | 85.1 |
| MS.gene40031.t1 | AT5G20190 | 42.500 | 80 | 46 | 0 | 187 | 266 | 161 | 240 | 4.18e-16 | 76.6 |
| MS.gene40031.t1 | AT2G29670 | 31.655 | 139 | 80 | 2 | 132 | 264 | 373 | 502 | 3.92e-12 | 66.2 |
| MS.gene40031.t1 | AT2G29670 | 31.655 | 139 | 80 | 2 | 132 | 264 | 373 | 502 | 3.92e-12 | 66.2 |
Find 38 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCACTTTCTTGCAAATT+TGG | 0.079418 | 1.4:-59816336 | None:intergenic |
| GTACGCTCAGTTTCTGTTTC+AGG | 0.166031 | 1.4:+59818081 | MS.gene40031:CDS |
| AATACCTCAAATGAAGAAAA+TGG | 0.310808 | 1.4:+59817953 | MS.gene40031:CDS |
| TTCAGAAACAAAGGATTGTT+AGG | 0.327806 | 1.4:-59818055 | None:intergenic |
| ATCAAAATTTCACCATCATT+AGG | 0.370677 | 1.4:-59817516 | None:intergenic |
| GCAACAGGACTTGGAGTTGA+TGG | 0.417790 | 1.4:+59816258 | MS.gene40031:CDS |
| TTTATTTGAACAAGCAGTTA+AGG | 0.423525 | 1.4:+59818509 | MS.gene40031:CDS |
| ATGTATCTTGCAACAGGACT+TGG | 0.428297 | 1.4:+59816249 | MS.gene40031:CDS |
| TGATATTGTTTCACCATCGC+TGG | 0.440835 | 1.4:-59818433 | None:intergenic |
| TTAAGGCTACCCCTGGAGAT+AGG | 0.448416 | 1.4:+59818526 | MS.gene40031:CDS |
| TGCTCTATGCGAAGCTGGTG+TGG | 0.460987 | 1.4:+59817538 | MS.gene40031:CDS |
| CCTCCTATGTATCTTGCAAC+AGG | 0.473970 | 1.4:+59816243 | None:intergenic |
| TCTTCATTTGAGGTATTGAC+AGG | 0.479140 | 1.4:-59817947 | None:intergenic |
| TGAAGAGTATTGCAAGAGAA+TGG | 0.488194 | 1.4:+59816362 | MS.gene40031:CDS |
| CTAAAGCTTCGCCTCAAGAC+AGG | 0.490113 | 1.4:+59817610 | MS.gene40031:CDS |
| GTGGCAACTTCATCATGATC+AGG | 0.495824 | 1.4:+59818473 | MS.gene40031:CDS |
| TGCAGATTATTTGAAGAGGA+TGG | 0.501840 | 1.4:+59818021 | MS.gene40031:CDS |
| TTCAGAATCAAAGGATGAGA+AGG | 0.514170 | 1.4:-59816396 | None:intergenic |
| TTACTACTCAAGAGCAATCT+CGG | 0.518424 | 1.4:+59818404 | MS.gene40031:CDS |
| CTGCTCTATCTCTGTCGTGA+TGG | 0.521264 | 1.4:-59817566 | None:intergenic |
| TTTGATGCTCTATGCGAAGC+TGG | 0.524828 | 1.4:+59817533 | MS.gene40031:CDS |
| TCATCTACTAATAGGGTAAG+GGG | 0.539500 | 1.4:+59817445 | MS.gene40031:intron |
| ATCATCTACTAATAGGGTAA+GGG | 0.541052 | 1.4:+59817444 | MS.gene40031:intron |
| GATATTGTTTCACCATCGCT+GGG | 0.549054 | 1.4:-59818432 | None:intergenic |
| CAAGCAGTTAAGGCTACCCC+TGG | 0.561179 | 1.4:+59818519 | MS.gene40031:CDS |
| AGTCCTGTTGCAAGATACAT+AGG | 0.565402 | 1.4:-59816246 | None:intergenic |
| ACTCTAGCTGATCCTAATGA+TGG | 0.567435 | 1.4:+59817504 | MS.gene40031:CDS |
| ATGATGCAGATTATTTGAAG+AGG | 0.572197 | 1.4:+59818017 | MS.gene40031:CDS |
| GCTCTATGCGAAGCTGGTGT+GGG | 0.572807 | 1.4:+59817539 | MS.gene40031:CDS |
| CAGAATATGCTAAACTGCAG+TGG | 0.603429 | 1.4:+59818454 | MS.gene40031:CDS |
| TAGAGATCTAGAAGCAGCAG+AGG | 0.604023 | 1.4:+59818380 | MS.gene40031:CDS |
| ATCTCGGCTGATCCCAGCGA+TGG | 0.610721 | 1.4:+59818420 | MS.gene40031:CDS |
| GCGTACTTCTTCAGAAACAA+AGG | 0.614171 | 1.4:-59818064 | None:intergenic |
| AAGTGAAAATCATACAACTC+AGG | 0.633526 | 1.4:+59817801 | MS.gene40031:CDS |
| CATCTACTAATAGGGTAAGG+GGG | 0.648861 | 1.4:+59817446 | MS.gene40031:intron |
| AAGTGTTGCTACCTGTCTTG+AGG | 0.667059 | 1.4:-59817621 | None:intergenic |
| ACAGGACTTGGAGTTGATGG+TGG | 0.718210 | 1.4:+59816261 | MS.gene40031:CDS |
| TCACGACAGAGATAGAGCAG+CGG | 0.771906 | 1.4:+59817569 | MS.gene40031:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTATTAAACAAACAAT+CGG | - | chr1.4:59817881-59817900 | None:intergenic | 10.0% |
| !! | ACTAAATTTACATATTAATG+AGG | + | chr1.4:59817033-59817052 | MS.gene40031:intron | 15.0% |
| !! | TTAATACATCAATTAATTAG+AGG | - | chr1.4:59817002-59817021 | None:intergenic | 15.0% |
| !!! | TATTTTTTTATTACTAAGCA+TGG | + | chr1.4:59816475-59816494 | MS.gene40031:intron | 15.0% |
| !! | AAGTTTCAATATTAGTAGAA+AGG | + | chr1.4:59816821-59816840 | MS.gene40031:intron | 20.0% |
| !! | TTTGATTCTGAATAAATAGA+TGG | + | chr1.4:59816946-59816965 | MS.gene40031:intron | 20.0% |
| !!! | AATTTTCATCATCTACTAAT+AGG | + | chr1.4:59817437-59817456 | MS.gene40031:intron | 20.0% |
| !!! | AGTGAGTTGTTTATTTTTTT+AGG | + | chr1.4:59816440-59816459 | MS.gene40031:intron | 20.0% |
| !!! | ATTTTCATCATCTACTAATA+GGG | + | chr1.4:59817438-59817457 | MS.gene40031:intron | 20.0% |
| !!! | GTGAGTTGTTTATTTTTTTA+GGG | + | chr1.4:59816441-59816460 | MS.gene40031:intron | 20.0% |
| !!! | TATCGTTCTAAAAAATCAAT+AGG | - | chr1.4:59817285-59817304 | None:intergenic | 20.0% |
| !!! | TGATTTTCTCAAATTACTAA+CGG | + | chr1.4:59816572-59816591 | MS.gene40031:intron | 20.0% |
| !!! | TTACTGTTATCTTTTATTCA+TGG | - | chr1.4:59817704-59817723 | None:intergenic | 20.0% |
| !!! | TTTGACTGTACATTATTTTA+AGG | - | chr1.4:59818360-59818379 | None:intergenic | 20.0% |
| ! | AATACCTCAAATGAAGAAAA+TGG | + | chr1.4:59817953-59817972 | MS.gene40031:CDS | 25.0% |
| ! | ATCAAAATTTCACCATCATT+AGG | - | chr1.4:59817519-59817538 | None:intergenic | 25.0% |
| ! | ATGATCATCATTATAGTATG+AGG | + | chr1.4:59818262-59818281 | MS.gene40031:intron | 25.0% |
| ! | ATTGATGTATTAAGTCTCAT+AGG | + | chr1.4:59817009-59817028 | MS.gene40031:intron | 25.0% |
| ! | CAATGTTTGATCACATAATT+CGG | - | chr1.4:59816877-59816896 | None:intergenic | 25.0% |
| ! | CATAGATAGATTTCAAATAG+CGG | + | chr1.4:59817061-59817080 | MS.gene40031:intron | 25.0% |
| ! | TCTTCTTGAATTGAAAAACA+TGG | - | chr1.4:59816681-59816700 | None:intergenic | 25.0% |
| ! | TTGATGTATTAAGTCTCATA+GGG | + | chr1.4:59817010-59817029 | MS.gene40031:intron | 25.0% |
| ! | TTTATTTGAACAAGCAGTTA+AGG | + | chr1.4:59818509-59818528 | MS.gene40031:CDS | 25.0% |
| !! | ATTTGAAATCTATCTATGTG+TGG | - | chr1.4:59817059-59817078 | None:intergenic | 25.0% |
| !! | CAAAATTTAGAACAACAATC+TGG | - | chr1.4:59816930-59816949 | None:intergenic | 25.0% |
| !! | CTTTTTGTATCTCTTACTTT+TGG | + | chr1.4:59816903-59816922 | MS.gene40031:intron | 25.0% |
| !! | TCTGAATAAATAGATGGTTT+TGG | + | chr1.4:59816952-59816971 | MS.gene40031:intron | 25.0% |
| !!! | GCATATTTTTTCAGAATCAA+AGG | - | chr1.4:59816408-59816427 | None:intergenic | 25.0% |
| !!! | TTTTTCTTCCAGCTATTTTA+AGG | + | chr1.4:59817835-59817854 | MS.gene40031:intron | 25.0% |
| AAGTGAAAATCATACAACTC+AGG | + | chr1.4:59817801-59817820 | MS.gene40031:CDS | 30.0% | |
| AATCTAATCGACTAAAACCA+AGG | - | chr1.4:59816646-59816665 | None:intergenic | 30.0% | |
| AGATAAAATTTCACAACCAC+TGG | + | chr1.4:59817324-59817343 | MS.gene40031:intron | 30.0% | |
| ATCATCTACTAATAGGGTAA+GGG | + | chr1.4:59817444-59817463 | MS.gene40031:intron | 30.0% | |
| ATGATGCAGATTATTTGAAG+AGG | + | chr1.4:59818017-59818036 | MS.gene40031:CDS | 30.0% | |
| CTATAATGTAGTCATGACTA+AGG | - | chr1.4:59817154-59817173 | None:intergenic | 30.0% | |
| GATAAAATTTCACAACCACT+GGG | + | chr1.4:59817325-59817344 | MS.gene40031:intron | 30.0% | |
| GTTATAGACATGCTATTACT+TGG | + | chr1.4:59818301-59818320 | MS.gene40031:intron | 30.0% | |
| TCCTAACATTATACTCCTAA+AGG | - | chr1.4:59818149-59818168 | None:intergenic | 30.0% | |
| TTCAGAAACAAAGGATTGTT+AGG | - | chr1.4:59818058-59818077 | None:intergenic | 30.0% | |
| TTCTCACTTTCTTGCAAATT+TGG | - | chr1.4:59816339-59816358 | None:intergenic | 30.0% | |
| ! | CTGTACATTTTATGCTCAAA+AGG | - | chr1.4:59818199-59818218 | None:intergenic | 30.0% |
| ! | TCCTTTAGGAGTATAATGTT+AGG | + | chr1.4:59818145-59818164 | MS.gene40031:intron | 30.0% |
| ! | TTTTGGATGATATGAGTAGT+AGG | + | chr1.4:59816969-59816988 | MS.gene40031:intron | 30.0% |
| !! | TGTTATTAGTTCTACTAAGC+AGG | - | chr1.4:59817255-59817274 | None:intergenic | 30.0% |
| !!! | GACTGTACATTATTTTAAGG+TGG | - | chr1.4:59818357-59818376 | None:intergenic | 30.0% |
| AATGTCAGCTGCAACAATAT+TGG | - | chr1.4:59817207-59817226 | None:intergenic | 35.0% | |
| ATGACACCTTACTGATAAGT+GGG | + | chr1.4:59816727-59816746 | MS.gene40031:intron | 35.0% | |
| CATCATCTACTAATAGGGTA+AGG | + | chr1.4:59817443-59817462 | MS.gene40031:intron | 35.0% | |
| CATTATATTGTGGAGAACTG+CGG | + | chr1.4:59817109-59817128 | MS.gene40031:intron | 35.0% | |
| CCATTCTATACAAAAGAACC+TGG | + | chr1.4:59817644-59817663 | MS.gene40031:intron | 35.0% | |
| CTATACAAAAGAACCTGGAA+TGG | + | chr1.4:59817649-59817668 | MS.gene40031:intron | 35.0% | |
| GAAACATCAAGCTCATCAAA+AGG | - | chr1.4:59817389-59817408 | None:intergenic | 35.0% | |
| TCATCTACTAATAGGGTAAG+GGG | + | chr1.4:59817445-59817464 | MS.gene40031:intron | 35.0% | |
| TCTCAAATTACTAACGGTGT+CGG | + | chr1.4:59816578-59816597 | MS.gene40031:intron | 35.0% | |
| TGCAGAGTAATGTTGTTAAC+TGG | + | chr1.4:59816771-59816790 | MS.gene40031:intron | 35.0% | |
| TGCAGATTATTTGAAGAGGA+TGG | + | chr1.4:59818021-59818040 | MS.gene40031:CDS | 35.0% | |
| TGGTTGCGACATCAAAATTT+CGG | - | chr1.4:59817187-59817206 | None:intergenic | 35.0% | |
| TGTTGCAGTCCATTATATTG+TGG | + | chr1.4:59817099-59817118 | MS.gene40031:intron | 35.0% | |
| TTACTACTCAAGAGCAATCT+CGG | + | chr1.4:59818404-59818423 | MS.gene40031:CDS | 35.0% | |
| TTCAGAATCAAAGGATGAGA+AGG | - | chr1.4:59816399-59816418 | None:intergenic | 35.0% | |
| ! | CCAGGTTCTTTTGTATAGAA+TGG | - | chr1.4:59817647-59817666 | None:intergenic | 35.0% |
| ! | TCAAAAGGCTGAAATTTGCT+CGG | - | chr1.4:59818184-59818203 | None:intergenic | 35.0% |
| ! | TGCACCATTTTCTTCATTTG+AGG | - | chr1.4:59817960-59817979 | None:intergenic | 35.0% |
| !! | AACAAACAATCGGTGTCATT+TGG | - | chr1.4:59817871-59817890 | None:intergenic | 35.0% |
| !! | ATGCTATTACTTGGTGTTTG+AGG | + | chr1.4:59818310-59818329 | MS.gene40031:intron | 35.0% |
| !! | TCTTCATTTGAGGTATTGAC+AGG | - | chr1.4:59817950-59817969 | None:intergenic | 35.0% |
| !! | TGAAGAGTATTGCAAGAGAA+TGG | + | chr1.4:59816362-59816381 | MS.gene40031:CDS | 35.0% |
| !!! | AGCATATGCTAGTTTTCTCT+GGG | + | chr1.4:59817756-59817775 | MS.gene40031:CDS | 35.0% |
| ACTCTAGCTGATCCTAATGA+TGG | + | chr1.4:59817504-59817523 | MS.gene40031:CDS | 40.0% | |
| ATGTATCTTGCAACAGGACT+TGG | + | chr1.4:59816249-59816268 | MS.gene40031:CDS | 40.0% | |
| CAAGTTAAAAGAGCCATTCC+AGG | - | chr1.4:59817665-59817684 | None:intergenic | 40.0% | |
| CAGAATATGCTAAACTGCAG+TGG | + | chr1.4:59818454-59818473 | MS.gene40031:CDS | 40.0% | |
| CATCTACTAATAGGGTAAGG+GGG | + | chr1.4:59817446-59817465 | MS.gene40031:intron | 40.0% | |
| CGCAGTTCTCCACAATATAA+TGG | - | chr1.4:59817111-59817130 | None:intergenic | 40.0% | |
| GATATTGTTTCACCATCGCT+GGG | - | chr1.4:59818435-59818454 | None:intergenic | 40.0% | |
| GATGACACCTTACTGATAAG+TGG | + | chr1.4:59816726-59816745 | MS.gene40031:intron | 40.0% | |
| GCGTACTTCTTCAGAAACAA+AGG | - | chr1.4:59818067-59818086 | None:intergenic | 40.0% | |
| TGATATTGTTTCACCATCGC+TGG | - | chr1.4:59818436-59818455 | None:intergenic | 40.0% | |
| ! | CAAAAGGCTGAAATTTGCTC+GGG | - | chr1.4:59818183-59818202 | None:intergenic | 40.0% |
| ! | GACAATGGCCTTAAAATAGC+TGG | - | chr1.4:59817846-59817865 | None:intergenic | 40.0% |
| !! | ATTAGTTCTACTAAGCAGGC+AGG | - | chr1.4:59817251-59817270 | None:intergenic | 40.0% |
| !!! | CAGCATATGCTAGTTTTCTC+TGG | + | chr1.4:59817755-59817774 | MS.gene40031:CDS | 40.0% |
| ATGAGGCTATGAGCTTCACA+TGG | + | chr1.4:59818279-59818298 | MS.gene40031:intron | 45.0% | |
| ATTGGGACACGTCTAATCAG+AGG | - | chr1.4:59816506-59816525 | None:intergenic | 45.0% | |
| CACCTTACTGATAAGTGGGT+AGG | + | chr1.4:59816731-59816750 | MS.gene40031:intron | 45.0% | |
| CAGACGCATACACATCCTTT+AGG | + | chr1.4:59818131-59818150 | MS.gene40031:intron | 45.0% | |
| CGACTAAAACCAAGGAAGCA+AGG | - | chr1.4:59816638-59816657 | None:intergenic | 45.0% | |
| CTGCAAGAACATCGCTGAAA+AGG | - | chr1.4:59817738-59817757 | None:intergenic | 45.0% | |
| GACCTACCCACTTATCAGTA+AGG | - | chr1.4:59816736-59816755 | None:intergenic | 45.0% | |
| GTACGCTCAGTTTCTGTTTC+AGG | + | chr1.4:59818081-59818100 | MS.gene40031:CDS | 45.0% | |
| GTGGCAACTTCATCATGATC+AGG | + | chr1.4:59818473-59818492 | MS.gene40031:CDS | 45.0% | |
| TAGAGATCTAGAAGCAGCAG+AGG | + | chr1.4:59818380-59818399 | MS.gene40031:CDS | 45.0% | |
| TCAAATAGCGGTAACACTCG+CGG | + | chr1.4:59817073-59817092 | MS.gene40031:intron | 45.0% | |
| TGAGTGTCAGACACGACATT+GGG | - | chr1.4:59816523-59816542 | None:intergenic | 45.0% | |
| TGTCTGTATCCTTGCTTCCT+TGG | + | chr1.4:59816626-59816645 | MS.gene40031:intron | 45.0% | |
| TTTGATGCTCTATGCGAAGC+TGG | + | chr1.4:59817533-59817552 | MS.gene40031:CDS | 45.0% | |
| ! | AAGTGTTGCTACCTGTCTTG+AGG | - | chr1.4:59817624-59817643 | None:intergenic | 45.0% |
| ! | CTCAGTTTCTGTTTCAGGTG+AGG | + | chr1.4:59818086-59818105 | MS.gene40031:intron | 45.0% |
| !! | CGGTGTCATTTGGAAGACAA+TGG | - | chr1.4:59817861-59817880 | None:intergenic | 45.0% |
| !!! | ATACATATATATTTTTTTTA+CGG | + | chr1.4:59816704-59816723 | MS.gene40031:intron | 5.0% |
| AAGTTCTCCTAGACTCCCAG+TGG | - | chr1.4:59817343-59817362 | None:intergenic | 50.0% | |
| CAAGGATACAGACACGACAC+CGG | - | chr1.4:59816620-59816639 | None:intergenic | 50.0% | |
| CTAAAGCTTCGCCTCAAGAC+AGG | + | chr1.4:59817610-59817629 | MS.gene40031:CDS | 50.0% | |
| CTGCTCTATCTCTGTCGTGA+TGG | - | chr1.4:59817569-59817588 | None:intergenic | 50.0% | |
| GAACTGCGGTCAAATGTGGT+TGG | + | chr1.4:59817123-59817142 | MS.gene40031:intron | 50.0% | |
| GATAAGTGGGTAGGTCGCTT+GGG | + | chr1.4:59816740-59816759 | MS.gene40031:intron | 50.0% | |
| GCAACAGGACTTGGAGTTGA+TGG | + | chr1.4:59816258-59816277 | MS.gene40031:CDS | 50.0% | |
| GGATCTGCAGTCAGAGACTT+AGG | + | chr1.4:59816842-59816861 | MS.gene40031:intron | 50.0% | |
| GTGAGTGTCAGACACGACAT+TGG | - | chr1.4:59816524-59816543 | None:intergenic | 50.0% | |
| TCACGACAGAGATAGAGCAG+CGG | + | chr1.4:59817569-59817588 | MS.gene40031:CDS | 50.0% | |
| TGATAAGTGGGTAGGTCGCT+TGG | + | chr1.4:59816739-59816758 | MS.gene40031:intron | 50.0% | |
| TGGAGAACTGCGGTCAAATG+TGG | + | chr1.4:59817119-59817138 | MS.gene40031:intron | 50.0% | |
| TTCACAACCACTGGGAGTCT+AGG | + | chr1.4:59817333-59817352 | MS.gene40031:intron | 50.0% | |
| !! | ACAGGACTTGGAGTTGATGG+TGG | + | chr1.4:59816261-59816280 | MS.gene40031:CDS | 50.0% |
| CAAGCAGTTAAGGCTACCCC+TGG | + | chr1.4:59818519-59818538 | MS.gene40031:CDS | 55.0% | |
| GCTCTATGCGAAGCTGGTGT+GGG | + | chr1.4:59817539-59817558 | MS.gene40031:CDS | 55.0% | |
| TCTACTAAGCAGGCAGGAGC+AGG | - | chr1.4:59817245-59817264 | None:intergenic | 55.0% | |
| TGCTCTATGCGAAGCTGGTG+TGG | + | chr1.4:59817538-59817557 | MS.gene40031:CDS | 55.0% | |
| AAGTGGGTAGGTCGCTTGGG+AGG | + | chr1.4:59816743-59816762 | MS.gene40031:intron | 60.0% | |
| ACACGACACCGGACACGACA+CGG | - | chr1.4:59816609-59816628 | None:intergenic | 60.0% | |
| AGTGGGTAGGTCGCTTGGGA+GGG | + | chr1.4:59816744-59816763 | MS.gene40031:intron | 60.0% | |
| ATCTCGGCTGATCCCAGCGA+TGG | + | chr1.4:59818420-59818439 | MS.gene40031:CDS | 60.0% | |
| GGGGGAGCTTCAAGATGCAG+AGG | + | chr1.4:59817464-59817483 | MS.gene40031:CDS | 60.0% | |
| CGGCATGTCCGTGTCGTGTC+CGG | + | chr1.4:59816598-59816617 | MS.gene40031:intron | 65.0% | |
| GTGGGTAGGTCGCTTGGGAG+GGG | + | chr1.4:59816745-59816764 | MS.gene40031:intron | 65.0% | |
| GGTAGGTCGCTTGGGAGGGG+TGG | + | chr1.4:59816748-59816767 | MS.gene40031:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 59816249 | 59818547 | 59816249 | ID=MS.gene40031 |
| chr1.4 | mRNA | 59816249 | 59818547 | 59816249 | ID=MS.gene40031.t1;Parent=MS.gene40031 |
| chr1.4 | exon | 59816249 | 59816440 | 59816249 | ID=MS.gene40031.t1.exon1;Parent=MS.gene40031.t1 |
| chr1.4 | CDS | 59816249 | 59816440 | 59816249 | ID=cds.MS.gene40031.t1;Parent=MS.gene40031.t1 |
| chr1.4 | exon | 59817459 | 59817631 | 59817459 | ID=MS.gene40031.t1.exon2;Parent=MS.gene40031.t1 |
| chr1.4 | CDS | 59817459 | 59817631 | 59817459 | ID=cds.MS.gene40031.t1;Parent=MS.gene40031.t1 |
| chr1.4 | exon | 59817744 | 59817822 | 59817744 | ID=MS.gene40031.t1.exon3;Parent=MS.gene40031.t1 |
| chr1.4 | CDS | 59817744 | 59817822 | 59817744 | ID=cds.MS.gene40031.t1;Parent=MS.gene40031.t1 |
| chr1.4 | exon | 59817920 | 59818102 | 59817920 | ID=MS.gene40031.t1.exon4;Parent=MS.gene40031.t1 |
| chr1.4 | CDS | 59817920 | 59818102 | 59817920 | ID=cds.MS.gene40031.t1;Parent=MS.gene40031.t1 |
| chr1.4 | exon | 59818375 | 59818547 | 59818375 | ID=MS.gene40031.t1.exon5;Parent=MS.gene40031.t1 |
| chr1.4 | CDS | 59818375 | 59818547 | 59818375 | ID=cds.MS.gene40031.t1;Parent=MS.gene40031.t1 |
| Gene Sequence |
| Protein sequence |
