Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49193.t1 | XP_003615824.1 | 94.5 | 217 | 11 | 1 | 1 | 216 | 1 | 217 | 7.70E-103 | 383.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49193.t1 | Q9LU68 | 53.8 | 91 | 40 | 2 | 125 | 215 | 337 | 425 | 2.3e-15 | 84.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49193.t1 | B7FH76 | 94.5 | 217 | 11 | 1 | 1 | 216 | 1 | 217 | 5.5e-103 | 383.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene49193.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene49193 | 0.840286 | 9.53E-58 | -1.69E-46 |
| MS.gene049346 | MS.gene49193 | 0.812099 | 5.03E-51 | -1.69E-46 |
| MS.gene049910 | MS.gene49193 | 0.801136 | 1.04E-48 | -1.69E-46 |
| MS.gene049915 | MS.gene49193 | 0.817285 | 3.57E-52 | -1.69E-46 |
| MS.gene050227 | MS.gene49193 | 0.801701 | 7.95E-49 | -1.69E-46 |
| MS.gene050228 | MS.gene49193 | 0.803604 | 3.22E-49 | -1.69E-46 |
| MS.gene050303 | MS.gene49193 | 0.842736 | 2.15E-58 | -1.69E-46 |
| MS.gene050330 | MS.gene49193 | -0.839953 | 1.16E-57 | -1.69E-46 |
| MS.gene050438 | MS.gene49193 | 0.802667 | 5.03E-49 | -1.69E-46 |
| MS.gene050558 | MS.gene49193 | 0.813208 | 2.88E-51 | -1.69E-46 |
| MS.gene050642 | MS.gene49193 | 0.82397 | 1.04E-53 | -1.69E-46 |
| MS.gene050820 | MS.gene49193 | 0.818492 | 1.91E-52 | -1.69E-46 |
| MS.gene051257 | MS.gene49193 | 0.804469 | 2.13E-49 | -1.69E-46 |
| MS.gene051349 | MS.gene49193 | 0.803089 | 4.12E-49 | -1.69E-46 |
| MS.gene05137 | MS.gene49193 | 0.827069 | 1.92E-54 | -1.69E-46 |
| MS.gene051662 | MS.gene49193 | 0.811724 | 6.07E-51 | -1.69E-46 |
| MS.gene051983 | MS.gene49193 | 0.815336 | 9.74E-52 | -1.69E-46 |
| MS.gene052176 | MS.gene49193 | 0.833247 | 5.95E-56 | -1.69E-46 |
| MS.gene052302 | MS.gene49193 | 0.87487 | 4.81E-68 | -1.69E-46 |
| MS.gene052309 | MS.gene49193 | -0.836387 | 9.64E-57 | -1.69E-46 |
| MS.gene052376 | MS.gene49193 | 0.883459 | 4.41E-71 | -1.69E-46 |
| MS.gene052600 | MS.gene49193 | 0.826525 | 2.59E-54 | -1.69E-46 |
| MS.gene053630 | MS.gene49193 | 0.802532 | 5.37E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene49193 | 0.838011 | 3.70E-57 | -1.69E-46 |
| MS.gene053907 | MS.gene49193 | 0.81437 | 1.59E-51 | -1.69E-46 |
| MS.gene05432 | MS.gene49193 | 0.801211 | 1.00E-48 | -1.69E-46 |
| MS.gene054667 | MS.gene49193 | 0.801706 | 7.93E-49 | -1.69E-46 |
| MS.gene054942 | MS.gene49193 | 0.843957 | 1.02E-58 | -1.69E-46 |
| MS.gene054983 | MS.gene49193 | 0.831204 | 1.91E-55 | -1.69E-46 |
| MS.gene056425 | MS.gene49193 | 0.803749 | 3.00E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene49193 | 0.812165 | 4.86E-51 | -1.69E-46 |
| MS.gene056979 | MS.gene49193 | 0.807095 | 5.97E-50 | -1.69E-46 |
| MS.gene057060 | MS.gene49193 | 0.818742 | 1.67E-52 | -1.69E-46 |
| MS.gene057079 | MS.gene49193 | 0.812173 | 4.84E-51 | -1.69E-46 |
| MS.gene057121 | MS.gene49193 | 0.812672 | 3.77E-51 | -1.69E-46 |
| MS.gene057260 | MS.gene49193 | 0.804534 | 2.06E-49 | -1.69E-46 |
| MS.gene057439 | MS.gene49193 | 0.814261 | 1.69E-51 | -1.69E-46 |
| MS.gene057639 | MS.gene49193 | 0.820188 | 7.83E-53 | -1.69E-46 |
| MS.gene057754 | MS.gene49193 | 0.809336 | 1.99E-50 | -1.69E-46 |
| MS.gene058142 | MS.gene49193 | 0.801741 | 7.81E-49 | -1.69E-46 |
| MS.gene058168 | MS.gene49193 | 0.801003 | 1.11E-48 | -1.69E-46 |
| MS.gene058749 | MS.gene49193 | 0.80097 | 1.12E-48 | -1.69E-46 |
| MS.gene059569 | MS.gene49193 | 0.807683 | 4.48E-50 | -1.69E-46 |
| MS.gene060476 | MS.gene49193 | 0.804024 | 2.63E-49 | -1.69E-46 |
| MS.gene060572 | MS.gene49193 | 0.811409 | 7.10E-51 | -1.69E-46 |
| MS.gene061040 | MS.gene49193 | -0.834881 | 2.32E-56 | -1.69E-46 |
| MS.gene061049 | MS.gene49193 | 0.819987 | 8.70E-53 | -1.69E-46 |
| MS.gene061114 | MS.gene49193 | -0.810914 | 9.10E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49193.t1 | MTR_5g072780 | 95.853 | 217 | 8 | 1 | 1 | 216 | 1 | 217 | 1.11e-146 | 407 |
| MS.gene49193.t1 | MTR_7g032240 | 39.850 | 133 | 41 | 3 | 122 | 215 | 219 | 351 | 2.26e-20 | 88.2 |
| MS.gene49193.t1 | MTR_1g110870 | 44.144 | 111 | 42 | 3 | 123 | 215 | 316 | 424 | 1.54e-19 | 86.3 |
| MS.gene49193.t1 | MTR_4g127420 | 53.488 | 86 | 36 | 2 | 128 | 209 | 293 | 378 | 2.56e-19 | 85.5 |
| MS.gene49193.t1 | MTR_8g104190 | 41.727 | 139 | 53 | 4 | 93 | 215 | 274 | 400 | 3.51e-18 | 82.4 |
| MS.gene49193.t1 | MTR_1g013450 | 36.441 | 118 | 62 | 3 | 105 | 215 | 186 | 297 | 2.19e-13 | 68.2 |
| MS.gene49193.t1 | MTR_3g105710 | 67.442 | 43 | 14 | 0 | 173 | 215 | 232 | 274 | 1.95e-11 | 62.4 |
| MS.gene49193.t1 | MTR_4g128930 | 67.442 | 43 | 14 | 0 | 173 | 215 | 298 | 340 | 4.26e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49193.t1 | AT1G07050 | 67.000 | 100 | 26 | 3 | 118 | 215 | 99 | 193 | 2.36e-37 | 129 |
| MS.gene49193.t1 | AT1G07050 | 64.894 | 94 | 26 | 3 | 118 | 209 | 99 | 187 | 2.42e-32 | 116 |
| MS.gene49193.t1 | AT5G14370 | 53.211 | 109 | 36 | 3 | 122 | 215 | 228 | 336 | 2.53e-28 | 109 |
| MS.gene49193.t1 | AT4G25990 | 53.922 | 102 | 39 | 3 | 118 | 215 | 286 | 383 | 1.07e-23 | 97.8 |
| MS.gene49193.t1 | AT5G57180 | 53.846 | 91 | 40 | 2 | 125 | 215 | 337 | 425 | 5.68e-23 | 95.9 |
| MS.gene49193.t1 | AT1G73870 | 42.553 | 141 | 57 | 5 | 93 | 215 | 253 | 387 | 5.07e-21 | 90.1 |
| MS.gene49193.t1 | AT4G25990 | 47.009 | 117 | 39 | 4 | 118 | 215 | 286 | 398 | 6.10e-20 | 87.4 |
| MS.gene49193.t1 | AT4G25990 | 52.083 | 96 | 38 | 3 | 118 | 209 | 286 | 377 | 1.42e-19 | 86.3 |
| MS.gene49193.t1 | AT1G49130 | 52.747 | 91 | 34 | 3 | 127 | 215 | 237 | 320 | 2.02e-19 | 85.1 |
| MS.gene49193.t1 | AT1G49130 | 52.747 | 91 | 34 | 3 | 127 | 215 | 230 | 313 | 2.15e-19 | 85.1 |
| MS.gene49193.t1 | AT1G25440 | 46.429 | 112 | 42 | 4 | 122 | 215 | 292 | 403 | 4.27e-19 | 85.1 |
| MS.gene49193.t1 | AT5G57180 | 51.765 | 85 | 39 | 2 | 125 | 209 | 337 | 419 | 8.65e-19 | 84.3 |
| MS.gene49193.t1 | AT1G68520 | 41.525 | 118 | 51 | 3 | 116 | 215 | 282 | 399 | 1.10e-18 | 84.0 |
| MS.gene49193.t1 | AT2G24790 | 61.111 | 54 | 21 | 0 | 162 | 215 | 218 | 271 | 3.77e-13 | 67.4 |
| MS.gene49193.t1 | AT5G24930 | 53.226 | 62 | 29 | 0 | 154 | 215 | 276 | 337 | 5.54e-12 | 64.3 |
| MS.gene49193.t1 | AT5G57660 | 69.767 | 43 | 13 | 0 | 173 | 215 | 285 | 327 | 1.22e-11 | 63.5 |
Find 33 sgRNAs with CRISPR-Local
Find 69 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTCATGTTCTTCTTTCTT+TGG | 0.183818 | 5.4:+61429624 | None:intergenic |
| CTCATAATTGCATTTGCTTA+TGG | 0.208005 | 5.4:+61429380 | None:intergenic |
| GGTCTGACCGTGGCTCTCTT+TGG | 0.244079 | 5.4:-61429245 | MS.gene49193:CDS |
| GCTCTCTCTTCTTCCAATAT+TGG | 0.250193 | 5.4:+61428442 | None:intergenic |
| TTTGAATTATCAAGAGGTTT+TGG | 0.259887 | 5.4:-61429274 | MS.gene49193:CDS |
| AAAAGTGTGACCTTGATTCT+TGG | 0.281388 | 5.4:+61428316 | None:intergenic |
| GAAGAGAAGCAAGTGTTCTT+AGG | 0.336563 | 5.4:-61428417 | MS.gene49193:CDS |
| GTCTGACCGTGGCTCTCTTT+GGG | 0.337400 | 5.4:-61429244 | MS.gene49193:CDS |
| GATGGGAGAAGTGCCAATAT+TGG | 0.355037 | 5.4:-61428455 | MS.gene49193:CDS |
| AGTGTAAGATTTGTTGAAGT+TGG | 0.374346 | 5.4:+61429575 | None:intergenic |
| GGTATTTGAGTGGTAGCTTC+TGG | 0.391867 | 5.4:+61429600 | None:intergenic |
| ATAGTAGTAATGAGCTTCAT+TGG | 0.401933 | 5.4:-61429452 | MS.gene49193:CDS |
| AAGAGAGAAAATTACAATGA+TGG | 0.429279 | 5.4:-61429342 | MS.gene49193:CDS |
| TGAGCTTCATTGGGATATCA+TGG | 0.472007 | 5.4:-61429442 | MS.gene49193:CDS |
| CATAAGCAAATGCAATTATG+AGG | 0.478747 | 5.4:-61429379 | MS.gene49193:CDS |
| GAGGGATTTCCCTTTGATGA+AGG | 0.484035 | 5.4:-61429414 | MS.gene49193:CDS |
| ACTAACATAGGAGCCACTAT+TGG | 0.497136 | 5.4:+61429191 | None:intergenic |
| TAGTAGTAATGAGCTTCATT+GGG | 0.508412 | 5.4:-61429451 | MS.gene49193:CDS |
| AGGGATTTCCCTTTGATGAA+GGG | 0.520507 | 5.4:-61429413 | MS.gene49193:CDS |
| TCATTGGGATATCATGGAAT+GGG | 0.534580 | 5.4:-61429436 | MS.gene49193:CDS |
| TTCATTGGGATATCATGGAA+TGG | 0.539426 | 5.4:-61429437 | MS.gene49193:CDS |
| TTTGAATTTGAATTATCAAG+AGG | 0.541289 | 5.4:-61429280 | MS.gene49193:CDS |
| AACATAGGAGCCACTATTGG+AGG | 0.541652 | 5.4:+61429194 | None:intergenic |
| CGCTTTGTGAAGAGACATTG+AGG | 0.551371 | 5.4:-61428186 | None:intergenic |
| TAAGATTTGTTGAAGTTGGA+TGG | 0.551571 | 5.4:+61429579 | None:intergenic |
| TGATAAAAGACCAAGAATCA+AGG | 0.578251 | 5.4:-61428326 | MS.gene49193:intron |
| ATAGGAGCCACTATTGGAGG+AGG | 0.606351 | 5.4:+61429197 | None:intergenic |
| TTGGGATATCATGGAATGGG+AGG | 0.609318 | 5.4:-61429433 | MS.gene49193:CDS |
| GAAGTTGGATGGTATTTGAG+TGG | 0.615620 | 5.4:+61429590 | None:intergenic |
| TGGGATATCATGGAATGGGA+GGG | 0.659236 | 5.4:-61429432 | MS.gene49193:CDS |
| CATTAGCCCAAAGAGAGCCA+CGG | 0.677020 | 5.4:+61429238 | None:intergenic |
| AGTGGATGATGAAAAGAGTG+TGG | 0.691548 | 5.4:-61429310 | MS.gene49193:CDS |
| TTGGATGCATGGTCTGACCG+TGG | 0.694015 | 5.4:-61429255 | MS.gene49193:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATATAGTTGTTATA+TGG | + | chr5.4:61428802-61428821 | None:intergenic | 10.0% |
| !!! | TAATTTTAAATAGTAACAAA+AGG | + | chr5.4:61428834-61428853 | None:intergenic | 10.0% |
| !!! | TTCTTTTTTTTTTTTTCATT+GGG | - | chr5.4:61429569-61429588 | MS.gene49193:CDS | 10.0% |
| !!! | TTTCTTTTTTTTTTTTTCAT+TGG | - | chr5.4:61429568-61429587 | MS.gene49193:CDS | 10.0% |
| !! | TAAACAAAAAAGAAATTACT+AGG | + | chr5.4:61429364-61429383 | None:intergenic | 15.0% |
| !!! | AATTTCTTTTTTGTTTAGAT+GGG | - | chr5.4:61429367-61429386 | MS.gene49193:CDS | 15.0% |
| !!! | TAATTTCTTTTTTGTTTAGA+TGG | - | chr5.4:61429366-61429385 | MS.gene49193:CDS | 15.0% |
| !!! | TATCAATTCTTATTCTTTTA+AGG | - | chr5.4:61428751-61428770 | MS.gene49193:intron | 15.0% |
| !! | ATATAACAACTTATCCAAAA+AGG | - | chr5.4:61428776-61428795 | MS.gene49193:intron | 20.0% |
| !! | TTTGAATTTGAATTATCAAG+AGG | - | chr5.4:61428559-61428578 | MS.gene49193:intron | 20.0% |
| !!! | AAATTACAATGATGGTTTTT+TGG | - | chr5.4:61428505-61428524 | MS.gene49193:intron | 20.0% |
| !!! | ATAACTAAATTTTTGGTGAT+AGG | - | chr5.4:61429115-61429134 | MS.gene49193:intron | 20.0% |
| !!! | GTAACATATTTAGTTCATTT+TGG | - | chr5.4:61429211-61429230 | MS.gene49193:CDS | 20.0% |
| !!! | TTTGTCGATAACTAAATTTT+TGG | - | chr5.4:61429108-61429127 | MS.gene49193:intron | 20.0% |
| !!! | TTTGTGATATTTTTGATGTA+GGG | - | chr5.4:61429629-61429648 | MS.gene49193:CDS | 20.0% |
| !!! | TTTTGTGATATTTTTGATGT+AGG | - | chr5.4:61429628-61429647 | MS.gene49193:CDS | 20.0% |
| !!! | TTTTTGGATAAGTTGTTATA+TGG | + | chr5.4:61428777-61428796 | None:intergenic | 20.0% |
| ! | AAGAGAGAAAATTACAATGA+TGG | - | chr5.4:61428497-61428516 | MS.gene49193:intron | 25.0% |
| ! | ACATATATGAAAGTGAAGAT+TGG | + | chr5.4:61428683-61428702 | None:intergenic | 25.0% |
| ! | TATTACTTAATTGACACCAA+CGG | + | chr5.4:61428978-61428997 | None:intergenic | 25.0% |
| ! | TGGATAATGAATACTAACAT+AGG | + | chr5.4:61428663-61428682 | None:intergenic | 25.0% |
| ! | TTATTCGATCTATTCAATTG+TGG | - | chr5.4:61429079-61429098 | MS.gene49193:intron | 25.0% |
| !! | TTTGAATTATCAAGAGGTTT+TGG | - | chr5.4:61428565-61428584 | MS.gene49193:intron | 25.0% |
| !!! | TATGTTGACTTTTGTTTAGA+TGG | - | chr5.4:61428996-61429015 | MS.gene49193:intron | 25.0% |
| AAAACCTATTATCCAGAAAG+CGG | + | chr5.4:61429040-61429059 | None:intergenic | 30.0% | |
| ACTTCATGTTCTTCTTTCTT+TGG | + | chr5.4:61428218-61428237 | None:intergenic | 30.0% | |
| AGAAGAAGAAGAAGAACAAA+AGG | - | chr5.4:61428340-61428359 | MS.gene49193:CDS | 30.0% | |
| ATAGTAGTAATGAGCTTCAT+TGG | - | chr5.4:61428387-61428406 | MS.gene49193:CDS | 30.0% | |
| ATTACTTAATTGACACCAAC+GGG | + | chr5.4:61428977-61428996 | None:intergenic | 30.0% | |
| CATAAGCAAATGCAATTATG+AGG | - | chr5.4:61428460-61428479 | MS.gene49193:intron | 30.0% | |
| CTCATAATTGCATTTGCTTA+TGG | + | chr5.4:61428462-61428481 | None:intergenic | 30.0% | |
| TAGTAGTAATGAGCTTCATT+GGG | - | chr5.4:61428388-61428407 | MS.gene49193:CDS | 30.0% | |
| TGATAAAAGACCAAGAATCA+AGG | - | chr5.4:61429513-61429532 | MS.gene49193:CDS | 30.0% | |
| ! | CTACTATTACAAGTGTTTTG+TGG | + | chr5.4:61428374-61428393 | None:intergenic | 30.0% |
| ! | GCAAGAATAGTCATCAATTT+TGG | + | chr5.4:61428891-61428910 | None:intergenic | 30.0% |
| ! | TAGTTGTTATATGGCCTTTT+TGG | + | chr5.4:61428793-61428812 | None:intergenic | 30.0% |
| !! | AGTGTAAGATTTGTTGAAGT+TGG | + | chr5.4:61428267-61428286 | None:intergenic | 30.0% |
| !! | TAAGATTTGTTGAAGTTGGA+TGG | + | chr5.4:61428263-61428282 | None:intergenic | 30.0% |
| !! | TCATTTTTCCCTTCATCAAA+GGG | + | chr5.4:61428437-61428456 | None:intergenic | 30.0% |
| GATAGGTAATCTTTGATGCT+TGG | - | chr5.4:61429132-61429151 | MS.gene49193:intron | 35.0% | |
| TCATTGGGATATCATGGAAT+GGG | - | chr5.4:61428403-61428422 | MS.gene49193:CDS | 35.0% | |
| TTCATTGGGATATCATGGAA+TGG | - | chr5.4:61428402-61428421 | MS.gene49193:CDS | 35.0% | |
| ! | AAAAGTGTGACCTTGATTCT+TGG | + | chr5.4:61429526-61429545 | None:intergenic | 35.0% |
| ! | CACATATAGATTTTACCCGT+TGG | - | chr5.4:61428959-61428978 | MS.gene49193:intron | 35.0% |
| !! | CAGCGTTTAATTTTCGAACT+TGG | + | chr5.4:61429495-61429514 | None:intergenic | 35.0% |
| !! | CTCATTTTTCCCTTCATCAA+AGG | + | chr5.4:61428438-61428457 | None:intergenic | 35.0% |
| !!! | CAATGATGGTTTTTTGGAAG+TGG | - | chr5.4:61428511-61428530 | MS.gene49193:intron | 35.0% |
| ACTAACATAGGAGCCACTAT+TGG | + | chr5.4:61428651-61428670 | None:intergenic | 40.0% | |
| AGGGATTTCCCTTTGATGAA+GGG | - | chr5.4:61428426-61428445 | MS.gene49193:CDS | 40.0% | |
| AGTGGATGATGAAAAGAGTG+TGG | - | chr5.4:61428529-61428548 | MS.gene49193:intron | 40.0% | |
| GAAGAGAAGCAAGTGTTCTT+AGG | - | chr5.4:61429422-61429441 | MS.gene49193:CDS | 40.0% | |
| GAAGTTGGATGGTATTTGAG+TGG | + | chr5.4:61428252-61428271 | None:intergenic | 40.0% | |
| GCTCTCTCTTCTTCCAATAT+TGG | + | chr5.4:61429400-61429419 | None:intergenic | 40.0% | |
| TGAGCTTCATTGGGATATCA+TGG | - | chr5.4:61428397-61428416 | MS.gene49193:CDS | 40.0% | |
| TTGACCGCTTTCTGGATAAT+AGG | - | chr5.4:61429033-61429052 | MS.gene49193:intron | 40.0% | |
| ! | TCATTTTCCTCCTCCAATAG+TGG | - | chr5.4:61428635-61428654 | MS.gene49193:intron | 40.0% |
| !!! | ATCAAGAGGTTTTGGATGCA+TGG | - | chr5.4:61428573-61428592 | MS.gene49193:intron | 40.0% |
| AACATAGGAGCCACTATTGG+AGG | + | chr5.4:61428648-61428667 | None:intergenic | 45.0% | |
| AACTCTTGTTGACCGCTTTC+TGG | - | chr5.4:61429025-61429044 | MS.gene49193:intron | 45.0% | |
| GAGGGATTTCCCTTTGATGA+AGG | - | chr5.4:61428425-61428444 | MS.gene49193:CDS | 45.0% | |
| GGTATTTGAGTGGTAGCTTC+TGG | + | chr5.4:61428242-61428261 | None:intergenic | 45.0% | |
| TGGGATATCATGGAATGGGA+GGG | - | chr5.4:61428407-61428426 | MS.gene49193:CDS | 45.0% | |
| TTGGGATATCATGGAATGGG+AGG | - | chr5.4:61428406-61428425 | MS.gene49193:CDS | 45.0% | |
| !! | GATGGGAGAAGTGCCAATAT+TGG | - | chr5.4:61429384-61429403 | MS.gene49193:CDS | 45.0% |
| ATAGGAGCCACTATTGGAGG+AGG | + | chr5.4:61428645-61428664 | None:intergenic | 50.0% | |
| CATTAGCCCAAAGAGAGCCA+CGG | + | chr5.4:61428604-61428623 | None:intergenic | 50.0% | |
| GTCTGACCGTGGCTCTCTTT+GGG | - | chr5.4:61428595-61428614 | MS.gene49193:intron | 55.0% | |
| TTGGATGCATGGTCTGACCG+TGG | - | chr5.4:61428584-61428603 | MS.gene49193:intron | 55.0% | |
| GGTCTGACCGTGGCTCTCTT+TGG | - | chr5.4:61428594-61428613 | MS.gene49193:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 61428188 | 61429673 | 61428188 | ID=MS.gene49193 |
| chr5.4 | mRNA | 61428188 | 61429673 | 61428188 | ID=MS.gene49193.t1;Parent=MS.gene49193 |
| chr5.4 | exon | 61429197 | 61429673 | 61429197 | ID=MS.gene49193.t1.exon1;Parent=MS.gene49193.t1 |
| chr5.4 | CDS | 61429197 | 61429673 | 61429197 | ID=cds.MS.gene49193.t1;Parent=MS.gene49193.t1 |
| chr5.4 | exon | 61428327 | 61428476 | 61428327 | ID=MS.gene49193.t1.exon2;Parent=MS.gene49193.t1 |
| chr5.4 | CDS | 61428327 | 61428476 | 61428327 | ID=cds.MS.gene49193.t1;Parent=MS.gene49193.t1 |
| chr5.4 | exon | 61428188 | 61428211 | 61428188 | ID=MS.gene49193.t1.exon3;Parent=MS.gene49193.t1 |
| chr5.4 | CDS | 61428188 | 61428211 | 61428188 | ID=cds.MS.gene49193.t1;Parent=MS.gene49193.t1 |
| Gene Sequence |
| Protein sequence |
