Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56100.t1 | XP_013467022.1 | 95.4 | 307 | 13 | 1 | 1 | 307 | 1 | 306 | 1.30E-169 | 605.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56100.t1 | Q9M7I7 | 60.8 | 309 | 112 | 3 | 3 | 302 | 4 | 312 | 9.3e-111 | 401.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56100.t1 | A0A072VGW2 | 95.4 | 307 | 13 | 1 | 1 | 307 | 1 | 306 | 9.7e-170 | 605.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene56100 | 0.816209 | 6.22E-52 | -1.69E-46 |
| MS.gene049150 | MS.gene56100 | 0.801092 | 1.06E-48 | -1.69E-46 |
| MS.gene049346 | MS.gene56100 | 0.857247 | 1.86E-62 | -1.69E-46 |
| MS.gene049577 | MS.gene56100 | 0.832151 | 1.11E-55 | -1.69E-46 |
| MS.gene049910 | MS.gene56100 | 0.804693 | 1.91E-49 | -1.69E-46 |
| MS.gene049993 | MS.gene56100 | 0.816854 | 4.46E-52 | -1.69E-46 |
| MS.gene050060 | MS.gene56100 | 0.831359 | 1.75E-55 | -1.69E-46 |
| MS.gene050133 | MS.gene56100 | -0.802304 | 5.98E-49 | -1.69E-46 |
| MS.gene050301 | MS.gene56100 | 0.825715 | 4.03E-54 | -1.69E-46 |
| MS.gene050330 | MS.gene56100 | -0.807606 | 4.66E-50 | -1.69E-46 |
| MS.gene050397 | MS.gene56100 | 0.807918 | 4.00E-50 | -1.69E-46 |
| MS.gene050404 | MS.gene56100 | 0.857088 | 2.07E-62 | -1.69E-46 |
| MS.gene050406 | MS.gene56100 | 0.880882 | 3.80E-70 | -1.69E-46 |
| MS.gene050426 | MS.gene56100 | -0.858235 | 9.47E-63 | -1.69E-46 |
| MS.gene050464 | MS.gene56100 | 0.837185 | 6.03E-57 | -1.69E-46 |
| MS.gene050529 | MS.gene56100 | 0.851353 | 9.38E-61 | -1.69E-46 |
| MS.gene050642 | MS.gene56100 | 0.871486 | 6.59E-67 | -1.69E-46 |
| MS.gene050670 | MS.gene56100 | 0.805924 | 1.06E-49 | -1.69E-46 |
| MS.gene050812 | MS.gene56100 | 0.818858 | 1.57E-52 | -1.69E-46 |
| MS.gene051171 | MS.gene56100 | 0.867257 | 1.56E-65 | -1.69E-46 |
| MS.gene051208 | MS.gene56100 | 0.828832 | 7.22E-55 | -1.69E-46 |
| MS.gene051240 | MS.gene56100 | 0.85828 | 9.18E-63 | -1.69E-46 |
| MS.gene051242 | MS.gene56100 | 0.861995 | 6.93E-64 | -1.69E-46 |
| MS.gene051244 | MS.gene56100 | 0.821042 | 4.98E-53 | -1.69E-46 |
| MS.gene05137 | MS.gene56100 | 0.835962 | 1.24E-56 | -1.69E-46 |
| MS.gene051525 | MS.gene56100 | 0.83463 | 2.68E-56 | -1.69E-46 |
| MS.gene051582 | MS.gene56100 | 0.85008 | 2.14E-60 | -1.69E-46 |
| MS.gene051860 | MS.gene56100 | 0.802161 | 6.40E-49 | -1.69E-46 |
| MS.gene051983 | MS.gene56100 | 0.851897 | 6.58E-61 | -1.69E-46 |
| MS.gene052011 | MS.gene56100 | -0.859016 | 5.54E-63 | -1.69E-46 |
| MS.gene052077 | MS.gene56100 | 0.85457 | 1.13E-61 | -1.69E-46 |
| MS.gene052134 | MS.gene56100 | 0.84657 | 2.00E-59 | -1.69E-46 |
| MS.gene052135 | MS.gene56100 | 0.847123 | 1.41E-59 | -1.69E-46 |
| MS.gene052176 | MS.gene56100 | 0.829333 | 5.46E-55 | -1.69E-46 |
| MS.gene052188 | MS.gene56100 | 0.825159 | 5.46E-54 | -1.69E-46 |
| MS.gene052253 | MS.gene56100 | 0.838456 | 2.85E-57 | -1.69E-46 |
| MS.gene052309 | MS.gene56100 | -0.802104 | 6.57E-49 | -1.69E-46 |
| MS.gene052310 | MS.gene56100 | 0.809539 | 1.80E-50 | -1.69E-46 |
| MS.gene052340 | MS.gene56100 | 0.874412 | 6.89E-68 | -1.69E-46 |
| MS.gene052469 | MS.gene56100 | 0.82878 | 7.43E-55 | -1.69E-46 |
| MS.gene052589 | MS.gene56100 | 0.807969 | 3.90E-50 | -1.69E-46 |
| MS.gene052590 | MS.gene56100 | 0.826658 | 2.40E-54 | -1.69E-46 |
| MS.gene052600 | MS.gene56100 | 0.828246 | 1.00E-54 | -1.69E-46 |
| MS.gene052758 | MS.gene56100 | 0.810793 | 9.66E-51 | -1.69E-46 |
| MS.gene053330 | MS.gene56100 | 0.945215 | 4.63E-104 | -1.69E-46 |
| MS.gene053557 | MS.gene56100 | 0.831158 | 1.96E-55 | -1.69E-46 |
| MS.gene053836 | MS.gene56100 | 0.851705 | 7.46E-61 | -1.69E-46 |
| MS.gene053907 | MS.gene56100 | 0.843693 | 1.20E-58 | -1.69E-46 |
| MS.gene053928 | MS.gene56100 | 0.825317 | 5.01E-54 | -1.69E-46 |
| MS.gene053971 | MS.gene56100 | 0.868848 | 4.81E-66 | -1.69E-46 |
| MS.gene054102 | MS.gene56100 | 0.830932 | 2.22E-55 | -1.69E-46 |
| MS.gene054110 | MS.gene56100 | 0.822645 | 2.12E-53 | -1.69E-46 |
| MS.gene05413 | MS.gene56100 | 0.820666 | 6.08E-53 | -1.69E-46 |
| MS.gene054183 | MS.gene56100 | 0.833998 | 3.86E-56 | -1.69E-46 |
| MS.gene054349 | MS.gene56100 | 0.844682 | 6.50E-59 | -1.69E-46 |
| MS.gene054719 | MS.gene56100 | 0.84825 | 6.91E-60 | -1.69E-46 |
| MS.gene054930 | MS.gene56100 | 0.806196 | 9.25E-50 | -1.69E-46 |
| MS.gene054983 | MS.gene56100 | 0.8514 | 9.10E-61 | -1.69E-46 |
| MS.gene055116 | MS.gene56100 | 0.81796 | 2.51E-52 | -1.69E-46 |
| MS.gene055217 | MS.gene56100 | 0.803249 | 3.82E-49 | -1.69E-46 |
| MS.gene055370 | MS.gene56100 | 0.833717 | 4.54E-56 | -1.69E-46 |
| MS.gene055422 | MS.gene56100 | 0.801262 | 9.78E-49 | -1.69E-46 |
| MS.gene055428 | MS.gene56100 | 0.8178 | 2.73E-52 | -1.69E-46 |
| MS.gene055539 | MS.gene56100 | 0.810091 | 1.37E-50 | -1.69E-46 |
| MS.gene05553 | MS.gene56100 | 0.891799 | 2.85E-74 | -1.69E-46 |
| MS.gene056305 | MS.gene56100 | 0.838006 | 3.72E-57 | -1.69E-46 |
| MS.gene056451 | MS.gene56100 | 0.843378 | 1.45E-58 | -1.69E-46 |
| MS.gene056612 | MS.gene56100 | 0.852745 | 3.77E-61 | -1.69E-46 |
| MS.gene056633 | MS.gene56100 | 0.889504 | 2.28E-73 | -1.69E-46 |
| MS.gene056659 | MS.gene56100 | 0.8384 | 2.94E-57 | -1.69E-46 |
| MS.gene056664 | MS.gene56100 | 0.840658 | 7.62E-58 | -1.69E-46 |
| MS.gene056723 | MS.gene56100 | 0.844001 | 9.91E-59 | -1.69E-46 |
| MS.gene056899 | MS.gene56100 | -0.827532 | 1.49E-54 | -1.69E-46 |
| MS.gene056979 | MS.gene56100 | 0.840236 | 9.82E-58 | -1.69E-46 |
| MS.gene05702 | MS.gene56100 | 0.836833 | 7.42E-57 | -1.69E-46 |
| MS.gene057121 | MS.gene56100 | 0.830083 | 3.59E-55 | -1.69E-46 |
| MS.gene057396 | MS.gene56100 | 0.84307 | 1.76E-58 | -1.69E-46 |
| MS.gene057639 | MS.gene56100 | 0.807018 | 6.20E-50 | -1.69E-46 |
| MS.gene058002 | MS.gene56100 | 0.846489 | 2.10E-59 | -1.69E-46 |
| MS.gene05811 | MS.gene56100 | 0.82699 | 2.00E-54 | -1.69E-46 |
| MS.gene058142 | MS.gene56100 | 0.900899 | 4.61E-78 | -1.69E-46 |
| MS.gene058233 | MS.gene56100 | 0.852743 | 3.78E-61 | -1.69E-46 |
| MS.gene058276 | MS.gene56100 | 0.896948 | 2.26E-76 | -1.69E-46 |
| MS.gene058444 | MS.gene56100 | 0.803255 | 3.80E-49 | -1.69E-46 |
| MS.gene058710 | MS.gene56100 | 0.827504 | 1.51E-54 | -1.69E-46 |
| MS.gene058743 | MS.gene56100 | 0.817068 | 3.99E-52 | -1.69E-46 |
| MS.gene058746 | MS.gene56100 | 0.893456 | 6.18E-75 | -1.69E-46 |
| MS.gene058749 | MS.gene56100 | 0.808308 | 3.30E-50 | -1.69E-46 |
| MS.gene05886 | MS.gene56100 | 0.806484 | 8.05E-50 | -1.69E-46 |
| MS.gene059011 | MS.gene56100 | 0.848393 | 6.31E-60 | -1.69E-46 |
| MS.gene05907 | MS.gene56100 | 0.815418 | 9.34E-52 | -1.69E-46 |
| MS.gene059247 | MS.gene56100 | 0.869723 | 2.50E-66 | -1.69E-46 |
| MS.gene059285 | MS.gene56100 | 0.831365 | 1.74E-55 | -1.69E-46 |
| MS.gene059420 | MS.gene56100 | 0.840267 | 9.64E-58 | -1.69E-46 |
| MS.gene059692 | MS.gene56100 | 0.809231 | 2.10E-50 | -1.69E-46 |
| MS.gene059695 | MS.gene56100 | 0.807338 | 5.31E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene56100 | 0.84729 | 1.27E-59 | -1.69E-46 |
| MS.gene059894 | MS.gene56100 | 0.867903 | 9.71E-66 | -1.69E-46 |
| MS.gene059899 | MS.gene56100 | 0.808564 | 2.91E-50 | -1.69E-46 |
| MS.gene060083 | MS.gene56100 | 0.836921 | 7.05E-57 | -1.69E-46 |
| MS.gene060247 | MS.gene56100 | 0.827009 | 1.98E-54 | -1.69E-46 |
| MS.gene060407 | MS.gene56100 | 0.892516 | 1.48E-74 | -1.69E-46 |
| MS.gene061049 | MS.gene56100 | 0.873709 | 1.19E-67 | -1.69E-46 |
| MS.gene061114 | MS.gene56100 | -0.842783 | 2.09E-58 | -1.69E-46 |
| MS.gene061154 | MS.gene56100 | 0.803985 | 2.68E-49 | -1.69E-46 |
| MS.gene061159 | MS.gene56100 | 0.845745 | 3.35E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56100.t1 | MTR_1g041390 | 95.440 | 307 | 13 | 1 | 1 | 307 | 1 | 306 | 0.0 | 575 |
| MS.gene56100.t1 | MTR_1g041385 | 80.782 | 307 | 58 | 1 | 1 | 307 | 1 | 306 | 1.18e-176 | 490 |
| MS.gene56100.t1 | MTR_6g082500 | 45.307 | 309 | 150 | 6 | 6 | 306 | 15 | 312 | 1.72e-82 | 252 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56100.t1 | AT5G43860 | 60.194 | 309 | 114 | 3 | 3 | 302 | 4 | 312 | 9.75e-137 | 390 |
| MS.gene56100.t1 | AT1G19670 | 44.863 | 292 | 155 | 5 | 8 | 296 | 18 | 306 | 1.27e-82 | 253 |
Find 54 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTGCTAACTTGTCAAAATT+TGG | 0.166079 | 1.1:+25396200 | None:intergenic |
| GTTGCAATCAAGAGAGATTT+TGG | 0.211333 | 1.1:+25397720 | None:intergenic |
| GATATGGCAACATTGGTTAT+TGG | 0.240114 | 1.1:-25396002 | MS.gene56100:CDS |
| GCAACATTGGTTATTGGTTC+TGG | 0.258641 | 1.1:-25395996 | MS.gene56100:CDS |
| TCCTCATGATTGACACCTTT+TGG | 0.268999 | 1.1:+25395930 | None:intergenic |
| AACTGGATCAACTCCTATTA+TGG | 0.288193 | 1.1:+25396094 | None:intergenic |
| TCATTCATTTGATTATGATA+TGG | 0.288728 | 1.1:-25396018 | MS.gene56100:CDS |
| TTTCCTCTCTTAGTTGTATA+CGG | 0.291769 | 1.1:-25396321 | MS.gene56100:intron |
| CTGTAGCTGCAATAACAAAT+TGG | 0.301199 | 1.1:-25396265 | MS.gene56100:CDS |
| TTGGTTATTGGTTCTGGTTT+AGG | 0.306609 | 1.1:-25395990 | MS.gene56100:CDS |
| CCTTTATCCATTCCATCAAC+TGG | 0.334016 | 1.1:+25396077 | None:intergenic |
| GCGAATGTGAGAAACCTTCT+TGG | 0.345248 | 1.1:-25395899 | MS.gene56100:CDS |
| TGTTCACGTACACAACAATA+TGG | 0.376449 | 1.1:-25397832 | MS.gene56100:intron |
| TAAATCTCTTCAGTTATATC+AGG | 0.384754 | 1.1:+25396290 | None:intergenic |
| GATGATACTAAAGGAGTTAG+AGG | 0.384847 | 1.1:-25395834 | MS.gene56100:CDS |
| CCAGTTGATGGAATGGATAA+AGG | 0.394237 | 1.1:-25396077 | MS.gene56100:CDS |
| ATTGAGCATGTTGCTTCTCA+TGG | 0.404351 | 1.1:-25397618 | MS.gene56100:CDS |
| CTTCATTGTCATTGCTCCTC+AGG | 0.404622 | 1.1:-25397595 | MS.gene56100:intron |
| ACTATACCACTAAGCTACTA+AGG | 0.427307 | 1.1:-25397864 | MS.gene56100:CDS |
| GGGAAATCTCCACCTTCAAT+AGG | 0.443716 | 1.1:+25397696 | None:intergenic |
| TTGATTGCAACTCCTATTGA+AGG | 0.448310 | 1.1:-25397708 | MS.gene56100:CDS |
| TTTCCTCCTTGTGCACCAAA+AGG | 0.448584 | 1.1:-25395945 | MS.gene56100:CDS |
| ATCAACCCTTAGTAGCTTAG+TGG | 0.451335 | 1.1:+25397858 | None:intergenic |
| CCTCCAACAAACATCCTCAT+AGG | 0.452224 | 1.1:+25395768 | None:intergenic |
| AGTTATTGTTTATGTAAGAA+TGG | 0.459976 | 1.1:-25395804 | MS.gene56100:CDS |
| TGAGGAACATAGGTGAGAAT+TGG | 0.464534 | 1.1:+25396038 | None:intergenic |
| ATAGGAGTTGATCCAGTTGA+TGG | 0.466790 | 1.1:-25396089 | MS.gene56100:CDS |
| TGATTATGATATGGCAACAT+TGG | 0.479916 | 1.1:-25396009 | MS.gene56100:CDS |
| GATGTTTGTTGGAGGAGTTA+TGG | 0.484500 | 1.1:-25395760 | MS.gene56100:CDS |
| TTATGGTCATGTTGATATGT+TGG | 0.487257 | 1.1:-25395859 | MS.gene56100:CDS |
| TCTTAGTTGTATACGGTGGC+TGG | 0.500060 | 1.1:-25396314 | MS.gene56100:intron |
| ATAACAAATTGGCTATCTAA+AGG | 0.506043 | 1.1:-25396254 | MS.gene56100:CDS |
| AAACCTATGAGGATGTTTGT+TGG | 0.507798 | 1.1:-25395771 | MS.gene56100:CDS |
| TTTGACAAGTTAGCACTTGG+TGG | 0.520012 | 1.1:-25396194 | MS.gene56100:CDS |
| TATGTAAGAATGGAGAATCA+AGG | 0.525010 | 1.1:-25395794 | MS.gene56100:CDS |
| AGTTGATCCAGTTGATGGAA+TGG | 0.545451 | 1.1:-25396084 | MS.gene56100:CDS |
| TTCTTGAAAGCTTATTTGCA+TGG | 0.546906 | 1.1:-25395732 | MS.gene56100:CDS |
| ATCAAATGAATGAGGAACAT+AGG | 0.554355 | 1.1:+25396028 | None:intergenic |
| TAATCAAATTTCATCTCAAG+AGG | 0.556121 | 1.1:+25395663 | None:intergenic |
| CCTATGAGGATGTTTGTTGG+AGG | 0.568018 | 1.1:-25395768 | MS.gene56100:CDS |
| ATATCATAATCAAATGAATG+AGG | 0.572080 | 1.1:+25396020 | None:intergenic |
| GAGAATCAAGGAAACCTATG+AGG | 0.583866 | 1.1:-25395782 | MS.gene56100:CDS |
| GGAACATAGGTGAGAATTGG+TGG | 0.587964 | 1.1:+25396041 | None:intergenic |
| TTAGCCACAAAATACCAAGA+AGG | 0.593683 | 1.1:+25395885 | None:intergenic |
| TTGGTGGTCATAGTCGCGGC+GGG | 0.594950 | 1.1:-25396178 | MS.gene56100:CDS |
| ATTGCAACTCCTATTGAAGG+TGG | 0.601589 | 1.1:-25397705 | MS.gene56100:CDS |
| CTATACCACTAAGCTACTAA+GGG | 0.617726 | 1.1:-25397863 | MS.gene56100:CDS |
| ATGATACTAAAGGAGTTAGA+GGG | 0.619958 | 1.1:-25395833 | MS.gene56100:CDS |
| TTATTTGCATGGTGATAATG+TGG | 0.630656 | 1.1:-25395721 | MS.gene56100:CDS |
| CCTCTCTTAGTTGTATACGG+TGG | 0.634151 | 1.1:-25396318 | MS.gene56100:intron |
| ACCAAAAGGTGTCAATCATG+AGG | 0.655110 | 1.1:-25395931 | MS.gene56100:CDS |
| CTTGGTGGTCATAGTCGCGG+CGG | 0.660141 | 1.1:-25396179 | MS.gene56100:CDS |
| GCACTTGGTGGTCATAGTCG+CGG | 0.661508 | 1.1:-25396182 | MS.gene56100:CDS |
| ATGTTGGATGATGATACTAA+AGG | 0.689048 | 1.1:-25395843 | MS.gene56100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTCTTATAAAATCATA+AGG | + | chr1.1:25396716-25396735 | None:intergenic | 10.0% |
| !! | AATTTCTTATAAAATCATAA+GGG | + | chr1.1:25396715-25396734 | None:intergenic | 10.0% |
| !! | ATATTATAACATAAGAAAAT+TGG | - | chr1.1:25396599-25396618 | MS.gene56100:intron | 10.0% |
| !! | TAATCATTAAAAACATTATT+AGG | - | chr1.1:25396124-25396143 | MS.gene56100:CDS | 10.0% |
| !! | AACAATAAAATGTTTATTTG+GGG | + | chr1.1:25396553-25396572 | None:intergenic | 15.0% |
| !! | ACAACAATAAAATGTTTATT+TGG | + | chr1.1:25396555-25396574 | None:intergenic | 15.0% |
| !! | ATTTCTTATAAAATCATAAG+GGG | + | chr1.1:25396714-25396733 | None:intergenic | 15.0% |
| !! | CAACAATAAAATGTTTATTT+GGG | + | chr1.1:25396554-25396573 | None:intergenic | 15.0% |
| !! | TACATATTAAAATGTCAAAT+AGG | + | chr1.1:25395991-25396010 | None:intergenic | 15.0% |
| !!! | TTTTAATGATTATGTGAAAT+TGG | + | chr1.1:25396116-25396135 | None:intergenic | 15.0% |
| !! | AAATTGAAATTTGAAGATGT+TGG | + | chr1.1:25396645-25396664 | None:intergenic | 20.0% |
| !! | ACAAGAATTGAAATGAAATA+TGG | + | chr1.1:25396799-25396818 | None:intergenic | 20.0% |
| !! | ACAATAAAATGTTTATTTGG+GGG | + | chr1.1:25396552-25396571 | None:intergenic | 20.0% |
| !! | ACATTATTAGGAGAATATAA+TGG | - | chr1.1:25396136-25396155 | MS.gene56100:CDS | 20.0% |
| !! | AGTTATTGTTTATGTAAGAA+TGG | - | chr1.1:25397750-25397769 | MS.gene56100:intron | 20.0% |
| !! | ATATCATAATCAAATGAATG+AGG | + | chr1.1:25397537-25397556 | None:intergenic | 20.0% |
| !! | CACTTTAAATACACAAAATA+AGG | - | chr1.1:25396897-25396916 | MS.gene56100:intron | 20.0% |
| !! | TAGAAAATTGTAGAATCATA+GGG | - | chr1.1:25396243-25396262 | MS.gene56100:CDS | 20.0% |
| !! | TCATTCATTTGATTATGATA+TGG | - | chr1.1:25397536-25397555 | MS.gene56100:intron | 20.0% |
| !!! | TAAATTGTGAGTTTTTTAAG+TGG | + | chr1.1:25396833-25396852 | None:intergenic | 20.0% |
| !!! | TCAAAATTTGGTTTTATGTT+TGG | + | chr1.1:25397345-25397364 | None:intergenic | 20.0% |
| !!! | TCCATTAAGTCTTATAAATA+AGG | + | chr1.1:25396390-25396409 | None:intergenic | 20.0% |
| !!! | TCCTTATTTATAAGACTTAA+TGG | - | chr1.1:25396386-25396405 | MS.gene56100:intron | 20.0% |
| !!! | TTTCTTTTTTGTTTTTTGTC+AGG | + | chr1.1:25397092-25397111 | None:intergenic | 20.0% |
| ! | AATTCGTTGTAGTGAAAAAA+TGG | + | chr1.1:25396687-25396706 | None:intergenic | 25.0% |
| ! | ATAACAAATTGGCTATCTAA+AGG | - | chr1.1:25397300-25397319 | MS.gene56100:intron | 25.0% |
| ! | ATCTTAGAAAACATGTCTAA+TGG | - | chr1.1:25396928-25396947 | MS.gene56100:intron | 25.0% |
| ! | CAATAAAATGTTTATTTGGG+GGG | + | chr1.1:25396551-25396570 | None:intergenic | 25.0% |
| ! | GTAGAAAATTGTAGAATCAT+AGG | - | chr1.1:25396242-25396261 | MS.gene56100:CDS | 25.0% |
| ! | TAAATCTCTTCAGTTATATC+AGG | + | chr1.1:25397267-25397286 | None:intergenic | 25.0% |
| ! | TAATCAAATTTCATCTCAAG+AGG | + | chr1.1:25397894-25397913 | None:intergenic | 25.0% |
| ! | TGTTGTTAGAAAATTTGAGT+TGG | - | chr1.1:25396569-25396588 | MS.gene56100:intron | 25.0% |
| ! | TTATAAGAAATTTCAGTGCT+AGG | - | chr1.1:25396723-25396742 | MS.gene56100:intron | 25.0% |
| !! | CTAAAATTTTCAGCCATAAT+AGG | - | chr1.1:25397447-25397466 | MS.gene56100:intron | 25.0% |
| !! | TAAGATTCTTAGGATTTTGT+TGG | + | chr1.1:25396470-25396489 | None:intergenic | 25.0% |
| !!! | AAATTTGGTTTTATGTTTGG+TGG | + | chr1.1:25397342-25397361 | None:intergenic | 25.0% |
| !!! | GTTAGTAATGTTTTTGAAAC+TGG | - | chr1.1:25395665-25395684 | MS.gene56100:CDS | 25.0% |
| !!! | TAGGATTAGTTAATAGTTAG+TGG | + | chr1.1:25396442-25396461 | None:intergenic | 25.0% |
| !!! | TAGGATTTTGTTGGTTAATT+AGG | + | chr1.1:25396461-25396480 | None:intergenic | 25.0% |
| AAAAAATGGTGCAATGTCTA+TGG | + | chr1.1:25396673-25396692 | None:intergenic | 30.0% | |
| ATCAAATGAATGAGGAACAT+AGG | + | chr1.1:25397529-25397548 | None:intergenic | 30.0% | |
| ATCCTAAGAATCTTAACACA+TGG | - | chr1.1:25396475-25396494 | MS.gene56100:intron | 30.0% | |
| ATGATACTAAAGGAGTTAGA+GGG | - | chr1.1:25397721-25397740 | MS.gene56100:CDS | 30.0% | |
| ATGTTGGATGATGATACTAA+AGG | - | chr1.1:25397711-25397730 | MS.gene56100:CDS | 30.0% | |
| CATGTAGAAAAAGTAGAAGT+GGG | + | chr1.1:25395881-25395900 | None:intergenic | 30.0% | |
| GGAAAAAATTGGTTGCAATT+TGG | + | chr1.1:25397183-25397202 | None:intergenic | 30.0% | |
| TAGAACTGTTGGGAAAAAAT+TGG | + | chr1.1:25397194-25397213 | None:intergenic | 30.0% | |
| TAGTTAATAGTTAGTGGAGT+TGG | + | chr1.1:25396436-25396455 | None:intergenic | 30.0% | |
| TATAGGTCAATCAAACACAT+GGG | - | chr1.1:25396756-25396775 | MS.gene56100:intron | 30.0% | |
| TATGTAAGAATGGAGAATCA+AGG | - | chr1.1:25397760-25397779 | MS.gene56100:intron | 30.0% | |
| TGATTATGATATGGCAACAT+TGG | - | chr1.1:25397545-25397564 | MS.gene56100:intron | 30.0% | |
| TTAGCACACATGAACTATAT+AGG | + | chr1.1:25395782-25395801 | None:intergenic | 30.0% | |
| TTATGGTCATGTTGATATGT+TGG | - | chr1.1:25397695-25397714 | MS.gene56100:CDS | 30.0% | |
| TTCACCAAAATAGAACTGTT+GGG | + | chr1.1:25397204-25397223 | None:intergenic | 30.0% | |
| TTCTTGAAAGCTTATTTGCA+TGG | - | chr1.1:25397822-25397841 | MS.gene56100:intron | 30.0% | |
| TTTCACCAAAATAGAACTGT+TGG | + | chr1.1:25397205-25397224 | None:intergenic | 30.0% | |
| TTTCCTCTCTTAGTTGTATA+CGG | - | chr1.1:25397233-25397252 | MS.gene56100:intron | 30.0% | |
| ! | AGTGCTAACTTGTCAAAATT+TGG | + | chr1.1:25397357-25397376 | None:intergenic | 30.0% |
| ! | TATTTTGTGGCTAAGGATTA+TGG | - | chr1.1:25397678-25397697 | MS.gene56100:CDS | 30.0% |
| ! | TTATTTGCATGGTGATAATG+TGG | - | chr1.1:25397833-25397852 | MS.gene56100:CDS | 30.0% |
| ! | TTTTCCCAACAGTTCTATTT+TGG | - | chr1.1:25397197-25397216 | MS.gene56100:intron | 30.0% |
| !! | AATTTTGACAAGTTAGCACT+TGG | - | chr1.1:25397357-25397376 | MS.gene56100:intron | 30.0% |
| AAACCTATGAGGATGTTTGT+TGG | - | chr1.1:25397783-25397802 | MS.gene56100:intron | 35.0% | |
| AAATGTTTATTTGGGGGGTT+TGG | + | chr1.1:25396546-25396565 | None:intergenic | 35.0% | |
| AACTGGATCAACTCCTATTA+TGG | + | chr1.1:25397463-25397482 | None:intergenic | 35.0% | |
| ACTATACCACTAAGCTACTA+AGG | - | chr1.1:25395690-25395709 | MS.gene56100:CDS | 35.0% | |
| AGATTCACACACATAATGTG+TGG | + | chr1.1:25397056-25397075 | None:intergenic | 35.0% | |
| AGCCATGTGTTAAGATTCTT+AGG | + | chr1.1:25396480-25396499 | None:intergenic | 35.0% | |
| CCATGTAGAAAAAGTAGAAG+TGG | + | chr1.1:25395882-25395901 | None:intergenic | 35.0% | |
| CTATACCACTAAGCTACTAA+GGG | - | chr1.1:25395691-25395710 | MS.gene56100:CDS | 35.0% | |
| CTGTAGCTGCAATAACAAAT+TGG | - | chr1.1:25397289-25397308 | MS.gene56100:intron | 35.0% | |
| GATGATACTAAAGGAGTTAG+AGG | - | chr1.1:25397720-25397739 | MS.gene56100:CDS | 35.0% | |
| GTATAGGTCAATCAAACACA+TGG | - | chr1.1:25396755-25396774 | MS.gene56100:intron | 35.0% | |
| TGTTCACGTACACAACAATA+TGG | - | chr1.1:25395722-25395741 | MS.gene56100:CDS | 35.0% | |
| TTAGCCACAAAATACCAAGA+AGG | + | chr1.1:25397672-25397691 | None:intergenic | 35.0% | |
| TTGATTGCAACTCCTATTGA+AGG | - | chr1.1:25395846-25395865 | MS.gene56100:CDS | 35.0% | |
| ! | ACAATTTTCTACACTGTGCA+AGG | + | chr1.1:25396234-25396253 | None:intergenic | 35.0% |
| ! | GAAACCTTCTTGGTATTTTG+TGG | - | chr1.1:25397665-25397684 | MS.gene56100:CDS | 35.0% |
| ! | GATATGGCAACATTGGTTAT+TGG | - | chr1.1:25397552-25397571 | MS.gene56100:intron | 35.0% |
| ! | GTTGCAATCAAGAGAGATTT+TGG | + | chr1.1:25395837-25395856 | None:intergenic | 35.0% |
| ! | TTCTTGGTATTTTGTGGCTA+AGG | - | chr1.1:25397671-25397690 | MS.gene56100:CDS | 35.0% |
| !! | TTGGTTATTGGTTCTGGTTT+AGG | - | chr1.1:25397564-25397583 | MS.gene56100:intron | 35.0% |
| !!! | CCACTTCTACTTTTTCTACA+TGG | - | chr1.1:25395879-25395898 | MS.gene56100:CDS | 35.0% |
| !!! | TTTTTTGTCAGGTAGCCTAT+TGG | + | chr1.1:25397081-25397100 | None:intergenic | 35.0% |
| ATCAACCCTTAGTAGCTTAG+TGG | + | chr1.1:25395699-25395718 | None:intergenic | 40.0% | |
| ATTGCAACTCCTATTGAAGG+TGG | - | chr1.1:25395849-25395868 | MS.gene56100:CDS | 40.0% | |
| CCTTTATCCATTCCATCAAC+TGG | + | chr1.1:25397480-25397499 | None:intergenic | 40.0% | |
| CTACCAACTGGCTACAATTA+CGG | + | chr1.1:25396977-25396996 | None:intergenic | 40.0% | |
| GAGAATCAAGGAAACCTATG+AGG | - | chr1.1:25397772-25397791 | MS.gene56100:intron | 40.0% | |
| GTCAAATAGGAACTAACCTG+AGG | + | chr1.1:25395978-25395997 | None:intergenic | 40.0% | |
| TACCAACTGGCTACAATTAC+GGG | + | chr1.1:25396976-25396995 | None:intergenic | 40.0% | |
| TATCACGGACATTATGTGCA+GGG | - | chr1.1:25396998-25397017 | MS.gene56100:intron | 40.0% | |
| TGAGGAACATAGGTGAGAAT+TGG | + | chr1.1:25397519-25397538 | None:intergenic | 40.0% | |
| TGTGTGTGAATCTAGCCAAT+AGG | - | chr1.1:25397063-25397082 | MS.gene56100:intron | 40.0% | |
| TTTGACAAGTTAGCACTTGG+TGG | - | chr1.1:25397360-25397379 | MS.gene56100:intron | 40.0% | |
| ! | ATAGGAGTTGATCCAGTTGA+TGG | - | chr1.1:25397465-25397484 | MS.gene56100:intron | 40.0% |
| ! | ATTGAGCATGTTGCTTCTCA+TGG | - | chr1.1:25395936-25395955 | MS.gene56100:CDS | 40.0% |
| ! | ATTTTCTACACTGTGCAAGG+AGG | + | chr1.1:25396231-25396250 | None:intergenic | 40.0% |
| ! | GATGTTTGTTGGAGGAGTTA+TGG | - | chr1.1:25397794-25397813 | MS.gene56100:intron | 40.0% |
| ! | GCAATCAAGAGAGATTTTGG+TGG | + | chr1.1:25395834-25395853 | None:intergenic | 40.0% |
| ! | TCCTCATGATTGACACCTTT+TGG | + | chr1.1:25397627-25397646 | None:intergenic | 40.0% |
| ! | TGCTAGGACTATGAGAGTAT+AGG | - | chr1.1:25396739-25396758 | MS.gene56100:intron | 40.0% |
| !! | ACCAAAAGGTGTCAATCATG+AGG | - | chr1.1:25397623-25397642 | MS.gene56100:CDS | 40.0% |
| !! | AGTTGATCCAGTTGATGGAA+TGG | - | chr1.1:25397470-25397489 | MS.gene56100:intron | 40.0% |
| !! | ATCAAGAGAGATTTTGGTGG+TGG | + | chr1.1:25395831-25395850 | None:intergenic | 40.0% |
| !! | CCAGTTGATGGAATGGATAA+AGG | - | chr1.1:25397477-25397496 | MS.gene56100:intron | 40.0% |
| !! | GCAACATTGGTTATTGGTTC+TGG | - | chr1.1:25397558-25397577 | MS.gene56100:intron | 40.0% |
| !! | GTTTGCAAGAAGCACTTCTA+GGG | - | chr1.1:25396027-25396046 | MS.gene56100:CDS | 40.0% |
| !! | TGTTTGCAAGAAGCACTTCT+AGG | - | chr1.1:25396026-25396045 | MS.gene56100:CDS | 40.0% |
| AACCCTATACCTCTAACCTC+TGG | - | chr1.1:25396502-25396521 | MS.gene56100:intron | 45.0% | |
| ACACATAATGTGTGGAGAGG+TGG | + | chr1.1:25397048-25397067 | None:intergenic | 45.0% | |
| ATCACGGACATTATGTGCAG+GGG | - | chr1.1:25396999-25397018 | MS.gene56100:intron | 45.0% | |
| CACACACATAATGTGTGGAG+AGG | + | chr1.1:25397051-25397070 | None:intergenic | 45.0% | |
| CCACCGTATACAACTAAGAG+AGG | + | chr1.1:25397239-25397258 | None:intergenic | 45.0% | |
| CCTCCAACAAACATCCTCAT+AGG | + | chr1.1:25397789-25397808 | None:intergenic | 45.0% | |
| CCTCTCTTAGTTGTATACGG+TGG | - | chr1.1:25397236-25397255 | MS.gene56100:intron | 45.0% | |
| CTATCACGGACATTATGTGC+AGG | - | chr1.1:25396997-25397016 | MS.gene56100:intron | 45.0% | |
| CTTCATTGTCATTGCTCCTC+AGG | - | chr1.1:25395959-25395978 | MS.gene56100:CDS | 45.0% | |
| GCGAATGTGAGAAACCTTCT+TGG | - | chr1.1:25397655-25397674 | MS.gene56100:CDS | 45.0% | |
| GGAACATAGGTGAGAATTGG+TGG | + | chr1.1:25397516-25397535 | None:intergenic | 45.0% | |
| GGGAAATCTCCACCTTCAAT+AGG | + | chr1.1:25395861-25395880 | None:intergenic | 45.0% | |
| TCTTAGTTGTATACGGTGGC+TGG | - | chr1.1:25397240-25397259 | MS.gene56100:intron | 45.0% | |
| TTTCCTCCTTGTGCACCAAA+AGG | - | chr1.1:25397609-25397628 | MS.gene56100:CDS | 45.0% | |
| ! | AGCCAGAGGTTAGAGGTATA+GGG | + | chr1.1:25396507-25396526 | None:intergenic | 45.0% |
| ! | CCTATGAGGATGTTTGTTGG+AGG | - | chr1.1:25397786-25397805 | MS.gene56100:intron | 45.0% |
| !! | TAGCCAGTTGGTAGCTATCA+CGG | - | chr1.1:25396983-25397002 | MS.gene56100:intron | 45.0% |
| !! | TTGACACCTTTTGGTGCACA+AGG | + | chr1.1:25397618-25397637 | None:intergenic | 45.0% |
| GTCCCGTAATTGTAGCCAGT+TGG | - | chr1.1:25396971-25396990 | MS.gene56100:intron | 50.0% | |
| TGGTTTGAGCCAGAGGTTAG+AGG | + | chr1.1:25396514-25396533 | None:intergenic | 50.0% | |
| TGTCCGTGATAGCTACCAAC+TGG | + | chr1.1:25396989-25397008 | None:intergenic | 50.0% | |
| ! | AGAATCTGAGGTTCGAACCC+CGG | + | chr1.1:25397025-25397044 | None:intergenic | 50.0% |
| ! | GAGCCAGAGGTTAGAGGTAT+AGG | + | chr1.1:25396508-25396527 | None:intergenic | 50.0% |
| !! | ACACCTTTTGGTGCACAAGG+AGG | + | chr1.1:25397615-25397634 | None:intergenic | 50.0% |
| GTGGAGAGGTGGAGAATCTG+AGG | + | chr1.1:25397037-25397056 | None:intergenic | 55.0% | |
| ! | GCACTTGGTGGTCATAGTCG+CGG | - | chr1.1:25397372-25397391 | MS.gene56100:intron | 55.0% |
| !! | GCTCAACTGGTTTGAGCCAG+AGG | + | chr1.1:25396521-25396540 | None:intergenic | 55.0% |
| CGGACATTATGTGCAGGGGC+CGG | - | chr1.1:25397003-25397022 | MS.gene56100:intron | 60.0% | |
| GACATTATGTGCAGGGGCCG+GGG | - | chr1.1:25397005-25397024 | MS.gene56100:intron | 60.0% | |
| GGACATTATGTGCAGGGGCC+GGG | - | chr1.1:25397004-25397023 | MS.gene56100:intron | 60.0% | |
| ! | CTTGGTGGTCATAGTCGCGG+CGG | - | chr1.1:25397375-25397394 | MS.gene56100:intron | 60.0% |
| ! | GGGGGGTTTGGTAGCTCAAC+TGG | + | chr1.1:25396534-25396553 | None:intergenic | 60.0% |
| ! | TTGGTGGTCATAGTCGCGGC+GGG | - | chr1.1:25397376-25397395 | MS.gene56100:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 25395653 | 25397923 | 25395653 | ID=MS.gene56100 |
| chr1.1 | mRNA | 25395653 | 25397923 | 25395653 | ID=MS.gene56100.t1;Parent=MS.gene56100 |
| chr1.1 | exon | 25397833 | 25397923 | 25397833 | ID=MS.gene56100.t1.exon1;Parent=MS.gene56100.t1 |
| chr1.1 | CDS | 25397833 | 25397923 | 25397833 | ID=cds.MS.gene56100.t1;Parent=MS.gene56100.t1 |
| chr1.1 | exon | 25397596 | 25397750 | 25397596 | ID=MS.gene56100.t1.exon2;Parent=MS.gene56100.t1 |
| chr1.1 | CDS | 25397596 | 25397750 | 25397596 | ID=cds.MS.gene56100.t1;Parent=MS.gene56100.t1 |
| chr1.1 | exon | 25395653 | 25396330 | 25395653 | ID=MS.gene56100.t1.exon3;Parent=MS.gene56100.t1 |
| chr1.1 | CDS | 25395653 | 25396330 | 25395653 | ID=cds.MS.gene56100.t1;Parent=MS.gene56100.t1 |
| Gene Sequence |
| Protein sequence |
