Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35910.t1 | XP_003615824.1 | 95.4 | 217 | 10 | 0 | 1 | 217 | 1 | 217 | 1.10E-104 | 389.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35910.t1 | Q9LU68 | 53.8 | 91 | 40 | 2 | 126 | 216 | 337 | 425 | 2.3e-15 | 84.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35910.t1 | B7FH76 | 95.4 | 217 | 10 | 0 | 1 | 217 | 1 | 217 | 7.7e-105 | 389.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene35910.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene35910 | 0.828046 | 1.12E-54 | -1.69E-46 |
| MS.gene049346 | MS.gene35910 | 0.806292 | 8.83E-50 | -1.69E-46 |
| MS.gene049915 | MS.gene35910 | 0.821016 | 5.05E-53 | -1.69E-46 |
| MS.gene050227 | MS.gene35910 | 0.808269 | 3.37E-50 | -1.69E-46 |
| MS.gene050228 | MS.gene35910 | 0.810057 | 1.39E-50 | -1.69E-46 |
| MS.gene050303 | MS.gene35910 | 0.857795 | 1.28E-62 | -1.69E-46 |
| MS.gene050330 | MS.gene35910 | -0.827078 | 1.91E-54 | -1.69E-46 |
| MS.gene050558 | MS.gene35910 | 0.802488 | 5.48E-49 | -1.69E-46 |
| MS.gene050642 | MS.gene35910 | 0.829784 | 4.24E-55 | -1.69E-46 |
| MS.gene050750 | MS.gene35910 | 0.801739 | 7.81E-49 | -1.69E-46 |
| MS.gene050820 | MS.gene35910 | 0.826273 | 2.97E-54 | -1.69E-46 |
| MS.gene050953 | MS.gene35910 | 0.811317 | 7.44E-51 | -1.69E-46 |
| MS.gene051257 | MS.gene35910 | 0.807599 | 4.67E-50 | -1.69E-46 |
| MS.gene051349 | MS.gene35910 | 0.807996 | 3.85E-50 | -1.69E-46 |
| MS.gene05137 | MS.gene35910 | 0.828191 | 1.03E-54 | -1.69E-46 |
| MS.gene051633 | MS.gene35910 | 0.803951 | 2.73E-49 | -1.69E-46 |
| MS.gene051983 | MS.gene35910 | 0.822291 | 2.56E-53 | -1.69E-46 |
| MS.gene052176 | MS.gene35910 | 0.830684 | 2.56E-55 | -1.69E-46 |
| MS.gene052302 | MS.gene35910 | 0.857635 | 1.43E-62 | -1.69E-46 |
| MS.gene052309 | MS.gene35910 | -0.834999 | 2.17E-56 | -1.69E-46 |
| MS.gene052376 | MS.gene35910 | 0.87918 | 1.54E-69 | -1.69E-46 |
| MS.gene052600 | MS.gene35910 | 0.815602 | 8.50E-52 | -1.69E-46 |
| MS.gene053184 | MS.gene35910 | 0.803314 | 3.70E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene35910 | 0.826271 | 2.97E-54 | -1.69E-46 |
| MS.gene05432 | MS.gene35910 | 0.803876 | 2.83E-49 | -1.69E-46 |
| MS.gene054667 | MS.gene35910 | 0.800653 | 1.30E-48 | -1.69E-46 |
| MS.gene054942 | MS.gene35910 | 0.834035 | 3.78E-56 | -1.69E-46 |
| MS.gene054983 | MS.gene35910 | 0.833996 | 3.87E-56 | -1.69E-46 |
| MS.gene055808 | MS.gene35910 | 0.8048 | 1.82E-49 | -1.69E-46 |
| MS.gene056425 | MS.gene35910 | 0.811649 | 6.30E-51 | -1.69E-46 |
| MS.gene056631 | MS.gene35910 | 0.811715 | 6.09E-51 | -1.69E-46 |
| MS.gene056979 | MS.gene35910 | 0.814555 | 1.45E-51 | -1.69E-46 |
| MS.gene057060 | MS.gene35910 | 0.822542 | 2.24E-53 | -1.69E-46 |
| MS.gene057079 | MS.gene35910 | 0.820059 | 8.38E-53 | -1.69E-46 |
| MS.gene057121 | MS.gene35910 | 0.800261 | 1.57E-48 | -1.69E-46 |
| MS.gene057260 | MS.gene35910 | 0.806316 | 8.73E-50 | -1.69E-46 |
| MS.gene057639 | MS.gene35910 | 0.818827 | 1.60E-52 | -1.69E-46 |
| MS.gene057754 | MS.gene35910 | 0.80717 | 5.76E-50 | -1.69E-46 |
| MS.gene057967 | MS.gene35910 | 0.802435 | 5.62E-49 | -1.69E-46 |
| MS.gene058142 | MS.gene35910 | 0.800586 | 1.34E-48 | -1.69E-46 |
| MS.gene058168 | MS.gene35910 | 0.833285 | 5.82E-56 | -1.69E-46 |
| MS.gene058200 | MS.gene35910 | 0.800107 | 1.68E-48 | -1.69E-46 |
| MS.gene058426 | MS.gene35910 | 0.804743 | 1.87E-49 | -1.69E-46 |
| MS.gene059249 | MS.gene35910 | 0.801383 | 9.24E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene35910 | 0.807051 | 6.11E-50 | -1.69E-46 |
| MS.gene059569 | MS.gene35910 | 0.81442 | 1.55E-51 | -1.69E-46 |
| MS.gene060572 | MS.gene35910 | 0.824116 | 9.61E-54 | -1.69E-46 |
| MS.gene061040 | MS.gene35910 | -0.838224 | 3.26E-57 | -1.69E-46 |
| MS.gene061114 | MS.gene35910 | -0.8282 | 1.03E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35910.t1 | MTR_5g072780 | 95.392 | 217 | 10 | 0 | 1 | 217 | 1 | 217 | 1.71e-148 | 412 |
| MS.gene35910.t1 | MTR_7g032240 | 39.850 | 133 | 41 | 3 | 123 | 216 | 219 | 351 | 2.72e-20 | 87.8 |
| MS.gene35910.t1 | MTR_1g110870 | 44.144 | 111 | 42 | 3 | 124 | 216 | 316 | 424 | 1.49e-19 | 86.3 |
| MS.gene35910.t1 | MTR_4g127420 | 53.488 | 86 | 36 | 2 | 129 | 210 | 293 | 378 | 3.39e-19 | 85.1 |
| MS.gene35910.t1 | MTR_8g104190 | 41.727 | 139 | 53 | 4 | 94 | 216 | 274 | 400 | 2.69e-18 | 82.8 |
| MS.gene35910.t1 | MTR_1g013450 | 36.441 | 118 | 62 | 3 | 106 | 216 | 186 | 297 | 1.30e-13 | 68.9 |
| MS.gene35910.t1 | MTR_3g105710 | 67.442 | 43 | 14 | 0 | 174 | 216 | 232 | 274 | 1.95e-11 | 62.4 |
| MS.gene35910.t1 | MTR_4g128930 | 67.442 | 43 | 14 | 0 | 174 | 216 | 298 | 340 | 3.91e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35910.t1 | AT1G07050 | 67.000 | 100 | 26 | 3 | 119 | 216 | 99 | 193 | 3.16e-37 | 129 |
| MS.gene35910.t1 | AT1G07050 | 64.894 | 94 | 26 | 3 | 119 | 210 | 99 | 187 | 2.87e-32 | 116 |
| MS.gene35910.t1 | AT5G14370 | 53.211 | 109 | 36 | 3 | 123 | 216 | 228 | 336 | 2.95e-28 | 109 |
| MS.gene35910.t1 | AT4G25990 | 53.922 | 102 | 39 | 3 | 119 | 216 | 286 | 383 | 1.43e-23 | 97.4 |
| MS.gene35910.t1 | AT5G57180 | 53.846 | 91 | 40 | 2 | 126 | 216 | 337 | 425 | 6.70e-23 | 95.9 |
| MS.gene35910.t1 | AT1G73870 | 42.553 | 141 | 57 | 5 | 94 | 216 | 253 | 387 | 4.66e-21 | 90.5 |
| MS.gene35910.t1 | AT4G25990 | 47.009 | 117 | 39 | 4 | 119 | 216 | 286 | 398 | 8.08e-20 | 87.0 |
| MS.gene35910.t1 | AT4G25990 | 52.083 | 96 | 38 | 3 | 119 | 210 | 286 | 377 | 2.03e-19 | 85.9 |
| MS.gene35910.t1 | AT1G49130 | 52.747 | 91 | 34 | 3 | 128 | 216 | 230 | 313 | 2.04e-19 | 85.1 |
| MS.gene35910.t1 | AT1G49130 | 52.747 | 91 | 34 | 3 | 128 | 216 | 237 | 320 | 2.13e-19 | 85.1 |
| MS.gene35910.t1 | AT1G25440 | 46.429 | 112 | 42 | 4 | 123 | 216 | 292 | 403 | 4.38e-19 | 85.1 |
| MS.gene35910.t1 | AT1G68520 | 41.525 | 118 | 51 | 3 | 117 | 216 | 282 | 399 | 9.82e-19 | 84.0 |
| MS.gene35910.t1 | AT5G57180 | 51.765 | 85 | 39 | 2 | 126 | 210 | 337 | 419 | 1.11e-18 | 84.0 |
| MS.gene35910.t1 | AT2G24790 | 61.111 | 54 | 21 | 0 | 163 | 216 | 218 | 271 | 3.73e-13 | 67.4 |
| MS.gene35910.t1 | AT5G24930 | 53.226 | 62 | 29 | 0 | 155 | 216 | 276 | 337 | 5.38e-12 | 64.3 |
| MS.gene35910.t1 | AT5G57660 | 69.767 | 43 | 13 | 0 | 174 | 216 | 285 | 327 | 1.23e-11 | 63.5 |
Find 34 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTCATGTTCTTCTTTCTT+TGG | 0.183818 | 5.1:-55922196 | None:intergenic |
| GGTCTGACCGTGGCTCTCTT+TGG | 0.244079 | 5.1:+55922578 | MS.gene35910:CDS |
| GCTCTCTCTTCTTCCAATAT+TGG | 0.250193 | 5.1:-55923381 | None:intergenic |
| TTTGAATTATCAAGAGGTTT+TGG | 0.259887 | 5.1:+55922549 | MS.gene35910:CDS |
| AAAAGTGTGACCTTGATTCT+TGG | 0.281388 | 5.1:-55923507 | None:intergenic |
| GAAGAGAAGCAAGTGTTCTT+AGG | 0.336563 | 5.1:+55923406 | MS.gene35910:CDS |
| GTCTGACCGTGGCTCTCTTT+GGG | 0.337400 | 5.1:+55922579 | MS.gene35910:CDS |
| GATGGGAGAAGTGCCAATAT+TGG | 0.355037 | 5.1:+55923368 | MS.gene35910:intron |
| AGTGTAAGATTTGTTGAAGT+TGG | 0.374346 | 5.1:-55922245 | None:intergenic |
| ATAGTAGTAATGAGCTTCAT+TGG | 0.401933 | 5.1:+55922371 | MS.gene35910:CDS |
| CTCATCTTTCCCTTCATCAA+AGG | 0.415253 | 5.1:-55922419 | None:intergenic |
| TCATCTTTCCCTTCATCAAA+GGG | 0.428053 | 5.1:-55922418 | None:intergenic |
| AAGAGAGAAAATTACAATGA+TGG | 0.429279 | 5.1:+55922481 | MS.gene35910:CDS |
| CATAAGCAAATGCAATTATG+AGG | 0.471927 | 5.1:+55922444 | MS.gene35910:CDS |
| TGAGCTTCATTGGGATATCA+TGG | 0.472007 | 5.1:+55922381 | MS.gene35910:CDS |
| GAGGGATTTCCCTTTGATGA+AGG | 0.484035 | 5.1:+55922409 | MS.gene35910:CDS |
| ACTAACATAGGAGCCACTAT+TGG | 0.497136 | 5.1:-55922632 | None:intergenic |
| TAGTAGTAATGAGCTTCATT+GGG | 0.508412 | 5.1:+55922372 | MS.gene35910:CDS |
| AGGGATTTCCCTTTGATGAA+GGG | 0.520507 | 5.1:+55922410 | MS.gene35910:CDS |
| TCATTGGGATATCATGGAAT+GGG | 0.534580 | 5.1:+55922387 | MS.gene35910:CDS |
| TTCATTGGGATATCATGGAA+TGG | 0.539426 | 5.1:+55922386 | MS.gene35910:CDS |
| GGTATTTGAGTGGTAGCGTC+TGG | 0.540746 | 5.1:-55922220 | None:intergenic |
| TTTGAATTTGAATTATCAAG+AGG | 0.541289 | 5.1:+55922543 | MS.gene35910:CDS |
| AACATAGGAGCCACTATTGG+AGG | 0.541652 | 5.1:-55922629 | None:intergenic |
| CGCTTTGTGAAGAGACATTG+AGG | 0.551371 | 5.1:+55923635 | MS.gene35910:CDS |
| TAAGATTTGTTGAAGTTGGA+TGG | 0.551571 | 5.1:-55922241 | None:intergenic |
| TGATAAAAGACCAAGAATCA+AGG | 0.578251 | 5.1:+55923497 | MS.gene35910:CDS |
| ATAGGAGCCACTATTGGAGG+AGG | 0.606351 | 5.1:-55922626 | None:intergenic |
| TTGGGATATCATGGAATGGG+AGG | 0.609318 | 5.1:+55922390 | MS.gene35910:CDS |
| GAAGTTGGATGGTATTTGAG+TGG | 0.615620 | 5.1:-55922230 | None:intergenic |
| TGGGATATCATGGAATGGGA+GGG | 0.659236 | 5.1:+55922391 | MS.gene35910:CDS |
| CATTAGCCCAAAGAGAGCCA+CGG | 0.677020 | 5.1:-55922585 | None:intergenic |
| TTGGATGCATGGTCTGACCG+TGG | 0.694015 | 5.1:+55922568 | MS.gene35910:CDS |
| AATGGATGATGAAAAGAGTG+TGG | 0.704180 | 5.1:+55922513 | MS.gene35910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATATAGTTGTTATA+TGG | - | chr5.1:55922786-55922805 | None:intergenic | 10.0% |
| !!! | TAATTTTAAATAGTAACAAA+AGG | - | chr5.1:55922818-55922837 | None:intergenic | 10.0% |
| !! | TAAACAAAAAAGAAATTACT+AGG | - | chr5.1:55923348-55923367 | None:intergenic | 15.0% |
| !!! | AATTTCTTTTTTGTTTAGAT+GGG | + | chr5.1:55923351-55923370 | MS.gene35910:intron | 15.0% |
| !!! | GTTTCTTTTTTTTTTTCATT+GGG | + | chr5.1:55923551-55923570 | MS.gene35910:intron | 15.0% |
| !!! | TAATTTCTTTTTTGTTTAGA+TGG | + | chr5.1:55923350-55923369 | MS.gene35910:intron | 15.0% |
| !!! | TATCAATTCTTATTCTTTTA+AGG | + | chr5.1:55922735-55922754 | MS.gene35910:intron | 15.0% |
| !!! | TGTTTCTTTTTTTTTTTCAT+TGG | + | chr5.1:55923550-55923569 | MS.gene35910:intron | 15.0% |
| !! | ATATAACAACTTATCCAAAA+AGG | + | chr5.1:55922760-55922779 | MS.gene35910:intron | 20.0% |
| !! | TTTGAATTTGAATTATCAAG+AGG | + | chr5.1:55922543-55922562 | MS.gene35910:CDS | 20.0% |
| !!! | AAATTACAATGATGGTTTTT+TGG | + | chr5.1:55922489-55922508 | MS.gene35910:CDS | 20.0% |
| !!! | ATAACTAAATTTTTGGTGAT+AGG | + | chr5.1:55923099-55923118 | MS.gene35910:intron | 20.0% |
| !!! | GTAACATATTTAGTTCATTT+TGG | + | chr5.1:55923195-55923214 | MS.gene35910:intron | 20.0% |
| !!! | TATGTTGATTTTTGTTTAGA+TGG | + | chr5.1:55922980-55922999 | MS.gene35910:intron | 20.0% |
| !!! | TTTGTCGATAACTAAATTTT+TGG | + | chr5.1:55923092-55923111 | MS.gene35910:intron | 20.0% |
| !!! | TTTGTGATATTTTTGATGTA+GGG | + | chr5.1:55923611-55923630 | MS.gene35910:intron | 20.0% |
| !!! | TTTTGTGATATTTTTGATGT+AGG | + | chr5.1:55923610-55923629 | MS.gene35910:intron | 20.0% |
| !!! | TTTTTGGATAAGTTGTTATA+TGG | - | chr5.1:55922761-55922780 | None:intergenic | 20.0% |
| ! | AAGAGAGAAAATTACAATGA+TGG | + | chr5.1:55922481-55922500 | MS.gene35910:CDS | 25.0% |
| ! | ACATATATGAAAGTGAAGAT+TGG | - | chr5.1:55922667-55922686 | None:intergenic | 25.0% |
| ! | TATTACTTAATTGACACCAA+CGG | - | chr5.1:55922962-55922981 | None:intergenic | 25.0% |
| ! | TGGATAATGAATACTAACAT+AGG | - | chr5.1:55922647-55922666 | None:intergenic | 25.0% |
| ! | TTATTCGATCTATTCAATTG+TGG | + | chr5.1:55923063-55923082 | MS.gene35910:intron | 25.0% |
| !! | TTTGAATTATCAAGAGGTTT+TGG | + | chr5.1:55922549-55922568 | MS.gene35910:CDS | 25.0% |
| AAAACCTATTATCCAGAAAG+CGG | - | chr5.1:55923024-55923043 | None:intergenic | 30.0% | |
| ACTTCATGTTCTTCTTTCTT+TGG | - | chr5.1:55922199-55922218 | None:intergenic | 30.0% | |
| ATAGTAGTAATGAGCTTCAT+TGG | + | chr5.1:55922371-55922390 | MS.gene35910:CDS | 30.0% | |
| ATTACTTAATTGACACCAAC+GGG | - | chr5.1:55922961-55922980 | None:intergenic | 30.0% | |
| CATAAGCAAATGCAATTATG+AGG | + | chr5.1:55922444-55922463 | MS.gene35910:CDS | 30.0% | |
| TAGTAGTAATGAGCTTCATT+GGG | + | chr5.1:55922372-55922391 | MS.gene35910:CDS | 30.0% | |
| TGATAAAAGACCAAGAATCA+AGG | + | chr5.1:55923497-55923516 | MS.gene35910:CDS | 30.0% | |
| ! | CTACTATTACAAGTGTTTTG+TGG | - | chr5.1:55922358-55922377 | None:intergenic | 30.0% |
| ! | GCAAGAATAGTCATCAATTT+TGG | - | chr5.1:55922875-55922894 | None:intergenic | 30.0% |
| ! | TAGTTGTTATATGGCCTTTT+TGG | - | chr5.1:55922777-55922796 | None:intergenic | 30.0% |
| !! | AGTGTAAGATTTGTTGAAGT+TGG | - | chr5.1:55922248-55922267 | None:intergenic | 30.0% |
| !! | TAAGATTTGTTGAAGTTGGA+TGG | - | chr5.1:55922244-55922263 | None:intergenic | 30.0% |
| !!! | CAATGATGGTTTTTTGGAAA+TGG | + | chr5.1:55922495-55922514 | MS.gene35910:CDS | 30.0% |
| AATGGATGATGAAAAGAGTG+TGG | + | chr5.1:55922513-55922532 | MS.gene35910:CDS | 35.0% | |
| GATAGGTAATCTTTGATGCT+TGG | + | chr5.1:55923116-55923135 | MS.gene35910:intron | 35.0% | |
| TCATCTTTCCCTTCATCAAA+GGG | - | chr5.1:55922421-55922440 | None:intergenic | 35.0% | |
| TCATTGGGATATCATGGAAT+GGG | + | chr5.1:55922387-55922406 | MS.gene35910:CDS | 35.0% | |
| TTCATTGGGATATCATGGAA+TGG | + | chr5.1:55922386-55922405 | MS.gene35910:CDS | 35.0% | |
| ! | AAAAGTGTGACCTTGATTCT+TGG | - | chr5.1:55923510-55923529 | None:intergenic | 35.0% |
| ! | CACATAAAGATTTTACCCGT+TGG | + | chr5.1:55922943-55922962 | MS.gene35910:intron | 35.0% |
| !! | CAGCGTTTAATTTTCGAACT+TGG | - | chr5.1:55923479-55923498 | None:intergenic | 35.0% |
| ACTAACATAGGAGCCACTAT+TGG | - | chr5.1:55922635-55922654 | None:intergenic | 40.0% | |
| AGGGATTTCCCTTTGATGAA+GGG | + | chr5.1:55922410-55922429 | MS.gene35910:CDS | 40.0% | |
| CTCATCTTTCCCTTCATCAA+AGG | - | chr5.1:55922422-55922441 | None:intergenic | 40.0% | |
| GAAGAGAAGCAAGTGTTCTT+AGG | + | chr5.1:55923406-55923425 | MS.gene35910:CDS | 40.0% | |
| GAAGTTGGATGGTATTTGAG+TGG | - | chr5.1:55922233-55922252 | None:intergenic | 40.0% | |
| GCTCTCTCTTCTTCCAATAT+TGG | - | chr5.1:55923384-55923403 | None:intergenic | 40.0% | |
| TGAGCTTCATTGGGATATCA+TGG | + | chr5.1:55922381-55922400 | MS.gene35910:CDS | 40.0% | |
| TTGACCGCTTTCTGGATAAT+AGG | + | chr5.1:55923017-55923036 | MS.gene35910:intron | 40.0% | |
| ! | TCATTTTCCTCCTCCAATAG+TGG | + | chr5.1:55922619-55922638 | MS.gene35910:CDS | 40.0% |
| !!! | ATCAAGAGGTTTTGGATGCA+TGG | + | chr5.1:55922557-55922576 | MS.gene35910:CDS | 40.0% |
| AACATAGGAGCCACTATTGG+AGG | - | chr5.1:55922632-55922651 | None:intergenic | 45.0% | |
| AACTCTTGTTGACCGCTTTC+TGG | + | chr5.1:55923009-55923028 | MS.gene35910:intron | 45.0% | |
| GAGGGATTTCCCTTTGATGA+AGG | + | chr5.1:55922409-55922428 | MS.gene35910:CDS | 45.0% | |
| TGGGATATCATGGAATGGGA+GGG | + | chr5.1:55922391-55922410 | MS.gene35910:CDS | 45.0% | |
| TTGGGATATCATGGAATGGG+AGG | + | chr5.1:55922390-55922409 | MS.gene35910:CDS | 45.0% | |
| !! | GATGGGAGAAGTGCCAATAT+TGG | + | chr5.1:55923368-55923387 | MS.gene35910:intron | 45.0% |
| ATAGGAGCCACTATTGGAGG+AGG | - | chr5.1:55922629-55922648 | None:intergenic | 50.0% | |
| CATTAGCCCAAAGAGAGCCA+CGG | - | chr5.1:55922588-55922607 | None:intergenic | 50.0% | |
| ! | GGTATTTGAGTGGTAGCGTC+TGG | - | chr5.1:55922223-55922242 | None:intergenic | 50.0% |
| GTCTGACCGTGGCTCTCTTT+GGG | + | chr5.1:55922579-55922598 | MS.gene35910:CDS | 55.0% | |
| TTGGATGCATGGTCTGACCG+TGG | + | chr5.1:55922568-55922587 | MS.gene35910:CDS | 55.0% | |
| GGTCTGACCGTGGCTCTCTT+TGG | + | chr5.1:55922578-55922597 | MS.gene35910:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 55922169 | 55923655 | 55922169 | ID=MS.gene35910 |
| chr5.1 | mRNA | 55922169 | 55923655 | 55922169 | ID=MS.gene35910.t1;Parent=MS.gene35910 |
| chr5.1 | exon | 55922169 | 55922648 | 55922169 | ID=MS.gene35910.t1.exon1;Parent=MS.gene35910.t1 |
| chr5.1 | CDS | 55922169 | 55922648 | 55922169 | ID=cds.MS.gene35910.t1;Parent=MS.gene35910.t1 |
| chr5.1 | exon | 55923369 | 55923518 | 55923369 | ID=MS.gene35910.t1.exon2;Parent=MS.gene35910.t1 |
| chr5.1 | CDS | 55923369 | 55923518 | 55923369 | ID=cds.MS.gene35910.t1;Parent=MS.gene35910.t1 |
| chr5.1 | exon | 55923632 | 55923655 | 55923632 | ID=MS.gene35910.t1.exon3;Parent=MS.gene35910.t1 |
| chr5.1 | CDS | 55923632 | 55923655 | 55923632 | ID=cds.MS.gene35910.t1;Parent=MS.gene35910.t1 |
| Gene Sequence |
| Protein sequence |
