AlfalfaGEDB | MS.gene93743

M. sativa cultivar XinJiangDaYe / MS.gene93743

KEGG: -
GO: -
PFAM: PF11460.11

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93743.t1	RHN43932.1	96.9	127	2	1	1	125	32	158	3.70E-57	230.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93743.t1	A0A396GS31	96.9	127	2	1	1	125	32	158	2.7e-57	230.7

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049346	MS.gene93743	0.804865	1.76E-49	-1.69E-46
MS.gene049378	MS.gene93743	0.812597	3.91E-51	-1.69E-46
MS.gene049577	MS.gene93743	0.8169	4.36E-52	-1.69E-46
MS.gene049758	MS.gene93743	0.800046	1.73E-48	-1.69E-46
MS.gene050330	MS.gene93743	-0.829515	4.93E-55	-1.69E-46
MS.gene050404	MS.gene93743	0.854356	1.30E-61	-1.69E-46
MS.gene050406	MS.gene93743	0.859814	3.19E-63	-1.69E-46
MS.gene050426	MS.gene93743	-0.818157	2.27E-52	-1.69E-46
MS.gene050464	MS.gene93743	0.808194	3.49E-50	-1.69E-46
MS.gene050529	MS.gene93743	0.824055	9.93E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93743.t1	MTR_8g107430	99.065	107	1	0	19	125	90	196	1.12e-72	215

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93743.t1	AT3G17930	78.095	105	23	0	21	125	84	188	1.10e-57	177

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Find 27 sgRNAs with CRISPR-Local

Find 73 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTTGTTCAACTTGTGC+TGG	0.438263	4.2:-148692	MS.gene93743:CDS
ACAACATTTCCAGCTTGTAG+TGG	0.569187	4.2:+148706	None:intergenic
AGCTTGTAGTGGATCAAATC+CGG	0.498185	4.2:+148717	None:intergenic
AGGAAAGATGTCATATTAAT+CGG	0.384907	4.2:-148909	MS.gene93743:CDS
AGGCACCATTTGGATATTCA+AGG	0.473273	4.2:-148929	MS.gene93743:CDS
AGTACTGCTTCAAGAAGTCG+AGG	0.646449	4.2:-147791	MS.gene93743:CDS
AGTCTGATTATTATTAGAGG+AGG	0.586722	4.2:+149044	None:intergenic
CTACGAAAGTAAAGTCATGG+AGG	0.745272	4.2:-148584	MS.gene93743:intron
CTCCTCCAATGATTTGGATC+AGG	0.484089	4.2:-149070	None:intergenic
CTCTAATAATAATCAGACTA+AGG	0.483910	4.2:-149040	MS.gene93743:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATATGTATGTAGTAGTCTG+CGG	-	chr4.2:148361-148380	MS.gene93743:intron	30.0%
AGTCTGATTATTATTAGAGG+AGG	+	chr4.2:147795-147814	None:intergenic	30.0%
ATCATGCAACTATTCTTTCT+TGG	-	chr4.2:148075-148094	MS.gene93743:intron	30.0%
ATGTACCATGCGAAATAAAA+AGG	+	chr4.2:148554-148573	None:intergenic	30.0%
GATGACTGAAGTTATAAACT+TGG	-	chr4.2:148909-148928	MS.gene93743:CDS	30.0%
GCATATAAGTAGAGTATATG+AGG	+	chr4.2:147832-147851	None:intergenic	30.0%
GGCATGCTTAAAACAATAAA+AGG	+	chr4.2:148300-148319	None:intergenic	30.0%
TCTTTCCTTGAATATCCAAA+TGG	+	chr4.2:147915-147934	None:intergenic	30.0%
AAATGTTGTTCAACTTGTGC+TGG	-	chr4.2:148144-148163	MS.gene93743:intron	35.0%
ACTTCAGTCATCTATACCTT+CGG	+	chr4.2:148901-148920	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	147774	149084	147774	ID=MS.gene93743
chr4.2	mRNA	147774	149084	147774	ID=MS.gene93743.t1;Parent=MS.gene93743
chr4.2	exon	149034	149084	149034	ID=MS.gene93743.t1.exon1;Parent=MS.gene93743.t1
chr4.2	CDS	149034	149084	149034	ID=cds.MS.gene93743.t1;Parent=MS.gene93743.t1
chr4.2	exon	148863	148955	148863	ID=MS.gene93743.t1.exon2;Parent=MS.gene93743.t1
chr4.2	CDS	148863	148955	148863	ID=cds.MS.gene93743.t1;Parent=MS.gene93743.t1
chr4.2	exon	148585	148743	148585	ID=MS.gene93743.t1.exon3;Parent=MS.gene93743.t1
chr4.2	CDS	148585	148743	148585	ID=cds.MS.gene93743.t1;Parent=MS.gene93743.t1
chr4.2	exon	147774	147848	147774	ID=MS.gene93743.t1.exon4;Parent=MS.gene93743.t1
chr4.2	CDS	147774	147848	147774	ID=cds.MS.gene93743.t1;Parent=MS.gene93743.t1

Gene Sequence

>MS.gene93743

ATGATTTGGATCAGGACACCTCCTCTAATAATAATCAGACTAAGGCATGATGTATCCTCATATACTCTACTTATATGCTTAATATTACTGGGACTTGCTTATAATAATAAATACTAGTATTTGTTACAGACTAAGGCACCATTTGGATATTCAAGGAAAGATGTCATATTAATCGGACTTGGAGTTACTTTCCTTGGCATTGCCTTAAAATCCGGACTTGAGGTATCTCAACTCTGCTATAATACTCTTATTTTCCAATTACCACACACAGGCACTTATGTTTGTAATAAAACTGAGATTAATCATGCAACTATTCTTTCTTGGATATATATATTTTGCAGTTTGCCGGATTTGATCCACTACAAGCTGGAAATGTTGTTCAACTTGTGCTGGTTTTGGGCCTCACTGTTGGATGGATCTCAACATATATCTTCAGAGTCTCAAACAAGGAAATGACATATGCACAACAGCTACGTGACTACGAAAGTAAAGTCATGGAGGTAAAATAATACTAACATGGTTGCCTTTTATTGTTTTAAGCATGCCTGGGCTTCTTGTTATTCTTTGTCAAATTCTTGTTCTTGCACAATATGTATGTAGTAGTCTGCGGTCTTCAAAATGCTGAAATGTGGTGTCCCAAAAAGGAAAATATCATGCTAATTTGAGCGCTAGTCATAAATATATATGTTTTGTCCTAAAATTGTTTACAGTAAATATGTTTTGGCCAGAGATAATCAGGCCGTAAGTCAGAAGATATTATTCATCACTTGTTTTGTACCTTTTTATTTCGCATGGTACATTTTATGACCAAAGTTCTTGCGCTCTCTGCTTGCATTTTGTTATGAACTCATGATATACTACTGCTCCTTTTCATTATTGATTTATTTGGGAAATTATTCTTTGTGCTAAGAGTAAAAATGAGTTGAATAGATGTCCAACCTTATTCAAAATGTTTTACATTTTCCTTTGATATCTGAGTTAATAAGCTTATTGAAAATATCTCAGTGACTGATTGAAAATTCTCAAACTTGAAGCATCTGCGCACCATGTATCAACCCTGAGAGACTGTTAAACATTCAGATGTAAAAAAAAAAAAAAAAAAACTTATAATGAAATATTTCTTTCCGAAGGTATAGATGACTGAAGTTATAAACTTGGGTCTGCAGCAGGATGTGTGTTTACATTGTTTCTCATATAAAATGCCATAGAATAATTTTACCTCTATTGAATCTGCAGAAGCGGTTAGAGTCCCTAACAGAAGCAGAGCTACAAGTACTGCTTCAAGAAGTCGAGGAAGAGAAGAGTCGTTAG

Protein sequence

>MS.gene93743.t1

MIWIRTPPLIIIRLRHDTKAPFGYSRKDVILIGLGVTFLGIALKSGLEFAGFDPLQAGNVVQLVLVLGLTVGWISTYIFRVSNKEMTYAQQLRDYESKVMEKRLESLTEAELQVLLQEVEEEKSR