Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22505.t1 | XP_013450381.1 | 95.7 | 231 | 10 | 0 | 1 | 231 | 653 | 883 | 3.10E-118 | 434.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22505.t1 | F4JHA2 | 51.3 | 232 | 109 | 3 | 1 | 231 | 656 | 884 | 6.6e-61 | 235.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22505.t1 | A0A072U3V9 | 95.7 | 231 | 10 | 0 | 1 | 231 | 653 | 883 | 2.2e-118 | 434.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene22505 | 0.825974 | 3.50E-54 | -1.69E-46 |
| MS.gene049150 | MS.gene22505 | 0.824469 | 7.94E-54 | -1.69E-46 |
| MS.gene049151 | MS.gene22505 | 0.801027 | 1.09E-48 | -1.69E-46 |
| MS.gene049153 | MS.gene22505 | 0.821257 | 4.45E-53 | -1.69E-46 |
| MS.gene049170 | MS.gene22505 | 0.805598 | 1.24E-49 | -1.69E-46 |
| MS.gene049284 | MS.gene22505 | 0.817449 | 3.28E-52 | -1.69E-46 |
| MS.gene049297 | MS.gene22505 | 0.829091 | 6.25E-55 | -1.69E-46 |
| MS.gene049346 | MS.gene22505 | 0.834928 | 2.26E-56 | -1.69E-46 |
| MS.gene049378 | MS.gene22505 | 0.80156 | 8.50E-49 | -1.69E-46 |
| MS.gene049577 | MS.gene22505 | 0.81206 | 5.13E-51 | -1.69E-46 |
| MS.gene049599 | MS.gene22505 | -0.805725 | 1.16E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene22505 | 0.836365 | 9.77E-57 | -1.69E-46 |
| MS.gene049910 | MS.gene22505 | 0.856393 | 3.32E-62 | -1.69E-46 |
| MS.gene049915 | MS.gene22505 | 0.806823 | 6.82E-50 | -1.69E-46 |
| MS.gene049993 | MS.gene22505 | 0.815659 | 8.25E-52 | -1.69E-46 |
| MS.gene050227 | MS.gene22505 | 0.807104 | 5.95E-50 | -1.69E-46 |
| MS.gene050301 | MS.gene22505 | 0.841424 | 4.79E-58 | -1.69E-46 |
| MS.gene050330 | MS.gene22505 | -0.841615 | 4.27E-58 | -1.69E-46 |
| MS.gene050397 | MS.gene22505 | 0.817943 | 2.54E-52 | -1.69E-46 |
| MS.gene050404 | MS.gene22505 | 0.836688 | 8.08E-57 | -1.69E-46 |
| MS.gene050406 | MS.gene22505 | 0.841423 | 4.79E-58 | -1.69E-46 |
| MS.gene050426 | MS.gene22505 | -0.842095 | 3.19E-58 | -1.69E-46 |
| MS.gene050464 | MS.gene22505 | 0.850086 | 2.13E-60 | -1.69E-46 |
| MS.gene050529 | MS.gene22505 | 0.862925 | 3.59E-64 | -1.69E-46 |
| MS.gene050558 | MS.gene22505 | 0.819055 | 1.42E-52 | -1.69E-46 |
| MS.gene050642 | MS.gene22505 | 0.878098 | 3.70E-69 | -1.69E-46 |
| MS.gene050670 | MS.gene22505 | 0.805298 | 1.43E-49 | -1.69E-46 |
| MS.gene050820 | MS.gene22505 | 0.833101 | 6.47E-56 | -1.69E-46 |
| MS.gene05101 | MS.gene22505 | 0.803569 | 3.27E-49 | -1.69E-46 |
| MS.gene051171 | MS.gene22505 | 0.827473 | 1.53E-54 | -1.69E-46 |
| MS.gene05119 | MS.gene22505 | -0.830559 | 2.74E-55 | -1.69E-46 |
| MS.gene051208 | MS.gene22505 | 0.833894 | 4.10E-56 | -1.69E-46 |
| MS.gene051240 | MS.gene22505 | 0.837411 | 5.28E-57 | -1.69E-46 |
| MS.gene051242 | MS.gene22505 | 0.826296 | 2.93E-54 | -1.69E-46 |
| MS.gene05137 | MS.gene22505 | 0.837994 | 3.74E-57 | -1.69E-46 |
| MS.gene051525 | MS.gene22505 | 0.822181 | 2.72E-53 | -1.69E-46 |
| MS.gene051582 | MS.gene22505 | 0.856752 | 2.60E-62 | -1.69E-46 |
| MS.gene051860 | MS.gene22505 | 0.846167 | 2.57E-59 | -1.69E-46 |
| MS.gene051983 | MS.gene22505 | 0.872406 | 3.26E-67 | -1.69E-46 |
| MS.gene052011 | MS.gene22505 | -0.846415 | 2.20E-59 | -1.69E-46 |
| MS.gene052077 | MS.gene22505 | 0.862842 | 3.80E-64 | -1.69E-46 |
| MS.gene052078 | MS.gene22505 | 0.810641 | 1.04E-50 | -1.69E-46 |
| MS.gene052134 | MS.gene22505 | 0.830408 | 2.99E-55 | -1.69E-46 |
| MS.gene052135 | MS.gene22505 | 0.833294 | 5.79E-56 | -1.69E-46 |
| MS.gene052176 | MS.gene22505 | 0.8269 | 2.10E-54 | -1.69E-46 |
| MS.gene052178 | MS.gene22505 | 0.812798 | 3.54E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene22505 | 0.830638 | 2.62E-55 | -1.69E-46 |
| MS.gene052253 | MS.gene22505 | 0.847125 | 1.41E-59 | -1.69E-46 |
| MS.gene052309 | MS.gene22505 | -0.846818 | 1.71E-59 | -1.69E-46 |
| MS.gene052310 | MS.gene22505 | 0.822345 | 2.49E-53 | -1.69E-46 |
| MS.gene052340 | MS.gene22505 | 0.862382 | 5.27E-64 | -1.69E-46 |
| MS.gene052389 | MS.gene22505 | 0.815747 | 7.89E-52 | -1.69E-46 |
| MS.gene052600 | MS.gene22505 | 0.828995 | 6.59E-55 | -1.69E-46 |
| MS.gene053330 | MS.gene22505 | 0.871893 | 4.83E-67 | -1.69E-46 |
| MS.gene053557 | MS.gene22505 | 0.829 | 6.58E-55 | -1.69E-46 |
| MS.gene053836 | MS.gene22505 | 0.885164 | 1.03E-71 | -1.69E-46 |
| MS.gene053907 | MS.gene22505 | 0.849238 | 3.68E-60 | -1.69E-46 |
| MS.gene053971 | MS.gene22505 | 0.85229 | 5.09E-61 | -1.69E-46 |
| MS.gene05413 | MS.gene22505 | 0.806235 | 9.08E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene22505 | 0.834969 | 2.20E-56 | -1.69E-46 |
| MS.gene054349 | MS.gene22505 | 0.825184 | 5.38E-54 | -1.69E-46 |
| MS.gene054473 | MS.gene22505 | 0.837018 | 6.66E-57 | -1.69E-46 |
| MS.gene054719 | MS.gene22505 | 0.835324 | 1.79E-56 | -1.69E-46 |
| MS.gene054918 | MS.gene22505 | 0.818108 | 2.33E-52 | -1.69E-46 |
| MS.gene054930 | MS.gene22505 | 0.836501 | 9.02E-57 | -1.69E-46 |
| MS.gene054942 | MS.gene22505 | 0.817666 | 2.93E-52 | -1.69E-46 |
| MS.gene054983 | MS.gene22505 | 0.877573 | 5.64E-69 | -1.69E-46 |
| MS.gene055116 | MS.gene22505 | 0.820553 | 6.46E-53 | -1.69E-46 |
| MS.gene055277 | MS.gene22505 | 0.811734 | 6.04E-51 | -1.69E-46 |
| MS.gene055370 | MS.gene22505 | 0.835723 | 1.42E-56 | -1.69E-46 |
| MS.gene055422 | MS.gene22505 | 0.829521 | 4.91E-55 | -1.69E-46 |
| MS.gene055428 | MS.gene22505 | 0.854279 | 1.37E-61 | -1.69E-46 |
| MS.gene05553 | MS.gene22505 | 0.875577 | 2.76E-68 | -1.69E-46 |
| MS.gene056087 | MS.gene22505 | 0.820091 | 8.24E-53 | -1.69E-46 |
| MS.gene056305 | MS.gene22505 | 0.816661 | 4.93E-52 | -1.69E-46 |
| MS.gene056451 | MS.gene22505 | 0.852511 | 4.40E-61 | -1.69E-46 |
| MS.gene056612 | MS.gene22505 | 0.867217 | 1.61E-65 | -1.69E-46 |
| MS.gene056633 | MS.gene22505 | 0.838412 | 2.92E-57 | -1.69E-46 |
| MS.gene056659 | MS.gene22505 | 0.823167 | 1.60E-53 | -1.69E-46 |
| MS.gene056723 | MS.gene22505 | 0.832232 | 1.06E-55 | -1.69E-46 |
| MS.gene056899 | MS.gene22505 | -0.84436 | 7.93E-59 | -1.69E-46 |
| MS.gene056979 | MS.gene22505 | 0.87069 | 1.21E-66 | -1.69E-46 |
| MS.gene05702 | MS.gene22505 | 0.839548 | 1.48E-57 | -1.69E-46 |
| MS.gene057121 | MS.gene22505 | 0.859948 | 2.90E-63 | -1.69E-46 |
| MS.gene057245 | MS.gene22505 | 0.82039 | 7.03E-53 | -1.69E-46 |
| MS.gene057639 | MS.gene22505 | 0.84107 | 5.94E-58 | -1.69E-46 |
| MS.gene058002 | MS.gene22505 | 0.872998 | 2.07E-67 | -1.69E-46 |
| MS.gene05811 | MS.gene22505 | 0.851053 | 1.14E-60 | -1.69E-46 |
| MS.gene058139 | MS.gene22505 | 0.808221 | 3.44E-50 | -1.69E-46 |
| MS.gene058142 | MS.gene22505 | 0.908804 | 1.15E-81 | -1.69E-46 |
| MS.gene058233 | MS.gene22505 | 0.854352 | 1.30E-61 | -1.69E-46 |
| MS.gene058276 | MS.gene22505 | 0.871578 | 6.14E-67 | -1.69E-46 |
| MS.gene058710 | MS.gene22505 | 0.844591 | 6.88E-59 | -1.69E-46 |
| MS.gene058746 | MS.gene22505 | 0.859099 | 5.23E-63 | -1.69E-46 |
| MS.gene058749 | MS.gene22505 | 0.831205 | 1.90E-55 | -1.69E-46 |
| MS.gene058833 | MS.gene22505 | 0.809823 | 1.56E-50 | -1.69E-46 |
| MS.gene058845 | MS.gene22505 | 0.821298 | 4.35E-53 | -1.69E-46 |
| MS.gene05886 | MS.gene22505 | 0.838112 | 3.49E-57 | -1.69E-46 |
| MS.gene05907 | MS.gene22505 | 0.834628 | 2.69E-56 | -1.69E-46 |
| MS.gene059247 | MS.gene22505 | 0.869544 | 2.86E-66 | -1.69E-46 |
| MS.gene059285 | MS.gene22505 | 0.861268 | 1.16E-63 | -1.69E-46 |
| MS.gene059420 | MS.gene22505 | 0.822839 | 1.91E-53 | -1.69E-46 |
| MS.gene059518 | MS.gene22505 | 0.813216 | 2.86E-51 | -1.69E-46 |
| MS.gene059597 | MS.gene22505 | 0.838027 | 3.67E-57 | -1.69E-46 |
| MS.gene059688 | MS.gene22505 | 0.815007 | 1.15E-51 | -1.69E-46 |
| MS.gene059692 | MS.gene22505 | 0.824224 | 9.06E-54 | -1.69E-46 |
| MS.gene059695 | MS.gene22505 | 0.81792 | 2.57E-52 | -1.69E-46 |
| MS.gene05984 | MS.gene22505 | 0.87199 | 4.48E-67 | -1.69E-46 |
| MS.gene059894 | MS.gene22505 | 0.883024 | 6.37E-71 | -1.69E-46 |
| MS.gene059899 | MS.gene22505 | 0.84051 | 8.33E-58 | -1.69E-46 |
| MS.gene060247 | MS.gene22505 | 0.807615 | 4.64E-50 | -1.69E-46 |
| MS.gene060407 | MS.gene22505 | 0.872133 | 4.02E-67 | -1.69E-46 |
| MS.gene061040 | MS.gene22505 | -0.80766 | 4.53E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene22505 | 0.887579 | 1.26E-72 | -1.69E-46 |
| MS.gene061114 | MS.gene22505 | -0.871081 | 8.97E-67 | -1.69E-46 |
| MS.gene061159 | MS.gene22505 | 0.83042 | 2.97E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22505.t1 | MTR_7g108940 | 96.104 | 231 | 9 | 0 | 1 | 231 | 653 | 883 | 3.75e-161 | 468 |
| MS.gene22505.t1 | MTR_7g108940 | 92.405 | 158 | 12 | 0 | 1 | 158 | 653 | 810 | 3.68e-93 | 290 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22505.t1 | AT4G02260 | 52.586 | 232 | 106 | 3 | 1 | 231 | 656 | 884 | 3.66e-78 | 252 |
| MS.gene22505.t1 | AT4G02260 | 52.586 | 232 | 106 | 3 | 1 | 231 | 655 | 883 | 3.69e-78 | 252 |
| MS.gene22505.t1 | AT4G02260 | 48.707 | 232 | 100 | 4 | 1 | 231 | 655 | 868 | 5.33e-67 | 221 |
| MS.gene22505.t1 | AT4G02260 | 46.795 | 156 | 79 | 3 | 1 | 155 | 655 | 807 | 2.36e-39 | 144 |
Find 59 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCAGGACTTCTTTATATTT+TGG | 0.117821 | 7.3:+5840620 | None:intergenic |
| TGAAGGAAATTTAGAAAATT+TGG | 0.135903 | 7.3:-5839982 | MS.gene22505:intron |
| AGATCAAATACCGGGTGTTT+TGG | 0.268009 | 7.3:-5839836 | MS.gene22505:CDS |
| CCAGTAGCTCCAAACATAAA+AGG | 0.272058 | 7.3:-5840841 | MS.gene22505:CDS |
| GCCTCATGGCACAATATAGA+AGG | 0.336893 | 7.3:-5840566 | MS.gene22505:CDS |
| ATTGTTAACTTGAATCATAT+TGG | 0.354666 | 7.3:+5840643 | None:intergenic |
| AACGACCAGGCTGAGGTTGA+TGG | 0.426492 | 7.3:-5840038 | MS.gene22505:intron |
| CAGTAGCTCCAAACATAAAA+GGG | 0.435513 | 7.3:-5840840 | MS.gene22505:CDS |
| AACAATTATTTCAGGCATGA+TGG | 0.437402 | 7.3:-5840228 | MS.gene22505:intron |
| TCCTGCCAGGTTTAGAAAGT+TGG | 0.448380 | 7.3:-5840604 | MS.gene22505:CDS |
| GTTATGTTATTTCAAGTTGA+AGG | 0.457526 | 7.3:-5839999 | MS.gene22505:CDS |
| GCTGAGGTTGATGGCGGAAG+GGG | 0.457562 | 7.3:-5840029 | MS.gene22505:CDS |
| ATGTAAATTTGAAGGGCAAA+GGG | 0.462707 | 7.3:-5840694 | MS.gene22505:CDS |
| AGGCTGAGGTTGATGGCGGA+AGG | 0.474494 | 7.3:-5840031 | MS.gene22505:CDS |
| CGTGCATCATGTAAATTTGA+AGG | 0.483447 | 7.3:-5840702 | MS.gene22505:CDS |
| ACTGTCCTTCAGAGTAAGAA+TGG | 0.489568 | 7.3:-5840767 | MS.gene22505:CDS |
| GATCAGGAAGCTTACCTCTT+CGG | 0.489957 | 7.3:+5840507 | None:intergenic |
| CTCTAGAGTAGATCAAATAC+CGG | 0.491186 | 7.3:-5839845 | MS.gene22505:CDS |
| CAAAGGGGACATGATGCTGC+AGG | 0.497067 | 7.3:-5840678 | MS.gene22505:CDS |
| GCTTGGACACCCAAGGTCAA+TGG | 0.497685 | 7.3:-5840740 | MS.gene22505:CDS |
| GGCTGAGGTTGATGGCGGAA+GGG | 0.499777 | 7.3:-5840030 | MS.gene22505:CDS |
| CTTGAATCATATTGGAGACA+TGG | 0.502218 | 7.3:+5840651 | None:intergenic |
| ACTTTCTCAGTGATTCTGAC+GGG | 0.507221 | 7.3:-5840895 | MS.gene22505:CDS |
| AGAGTAAGAATGGAAGTGCT+TGG | 0.510899 | 7.3:-5840757 | MS.gene22505:CDS |
| GGTTGATGGCGGAAGGGGAA+TGG | 0.511538 | 7.3:-5840024 | MS.gene22505:CDS |
| GGCTGAGGTCGCTACAGCAT+TGG | 0.515456 | 7.3:-5840207 | MS.gene22505:CDS |
| AAATATAAAGAAGTCCTGCC+AGG | 0.526449 | 7.3:-5840617 | MS.gene22505:CDS |
| GATGGTCTACTGGCTGTAGT+TGG | 0.526752 | 7.3:-5839813 | MS.gene22505:CDS |
| CTGTAGTTGGCCAAGCCTGA+TGG | 0.529497 | 7.3:-5839800 | MS.gene22505:CDS |
| CATGTAAATTTGAAGGGCAA+AGG | 0.535165 | 7.3:-5840695 | MS.gene22505:CDS |
| TGCATACAACAGATAACCAT+TGG | 0.538972 | 7.3:+5840534 | None:intergenic |
| GCCAACTTTCTAAACCTGGC+AGG | 0.545096 | 7.3:+5840603 | None:intergenic |
| GCTTGCCAACTTTCTAAACC+TGG | 0.549616 | 7.3:+5840599 | None:intergenic |
| TATTTCAGGCATGATGGCTG+AGG | 0.552186 | 7.3:-5840222 | MS.gene22505:intron |
| CACTTCCATTCTTACTCTGA+AGG | 0.552893 | 7.3:+5840762 | None:intergenic |
| TACAACAGATAACCATTGGA+TGG | 0.554913 | 7.3:+5840538 | None:intergenic |
| GACTTTCTCAGTGATTCTGA+CGG | 0.576627 | 7.3:-5840896 | MS.gene22505:CDS |
| ACTCACCACACAAGAACATA+CGG | 0.588943 | 7.3:+5840169 | None:intergenic |
| AAGCCCATAAAATTGCCTCA+TGG | 0.605242 | 7.3:-5840580 | MS.gene22505:CDS |
| TAGAAGGGCATTCCATCCAA+TGG | 0.607450 | 7.3:-5840550 | MS.gene22505:CDS |
| GTGCATCATGTAAATTTGAA+GGG | 0.610778 | 7.3:-5840701 | MS.gene22505:CDS |
| TGGAAGTGCTTGGACACCCA+AGG | 0.611288 | 7.3:-5840747 | MS.gene22505:CDS |
| CCTCATGGCACAATATAGAA+GGG | 0.612331 | 7.3:-5840565 | MS.gene22505:CDS |
| AAAGGGGACATGATGCTGCA+GGG | 0.620819 | 7.3:-5840677 | MS.gene22505:CDS |
| GAAAATATTATTGAACGGTG+TGG | 0.624304 | 7.3:-5840816 | MS.gene22505:CDS |
| TTCTGTAGTGATATCAGCAG+CGG | 0.640815 | 7.3:+5840928 | None:intergenic |
| CTTTCTCAGTGATTCTGACG+GGG | 0.642676 | 7.3:-5840894 | MS.gene22505:CDS |
| TGTAAATTTGAAGGGCAAAG+GGG | 0.645718 | 7.3:-5840693 | MS.gene22505:CDS |
| ACATACGGCTATGTCTGAAG+TGG | 0.647289 | 7.3:+5840184 | None:intergenic |
| AGTAGCTCCAAACATAAAAG+GGG | 0.650201 | 7.3:-5840839 | MS.gene22505:CDS |
| CCCTTCTATATTGTGCCATG+AGG | 0.650407 | 7.3:+5840565 | None:intergenic |
| TCTAGCATTCAAGAACGCCA+TGG | 0.653651 | 7.3:+5839773 | None:intergenic |
| TCTAGAGTAGATCAAATACC+GGG | 0.659498 | 7.3:-5839844 | MS.gene22505:CDS |
| GTTGTATGCATAGACCGAAG+AGG | 0.660812 | 7.3:-5840521 | MS.gene22505:intron |
| GACCAGGCTGAGGTTGATGG+CGG | 0.663709 | 7.3:-5840035 | MS.gene22505:intron |
| GTAGACCATCCCAAAACACC+CGG | 0.672266 | 7.3:+5839826 | None:intergenic |
| CATAGCCGTATGTTCTTGTG+TGG | 0.682854 | 7.3:-5840174 | MS.gene22505:intron |
| CCAAGCCTGATGGAAAACCA+TGG | 0.686242 | 7.3:-5839790 | MS.gene22505:CDS |
| GTAGCTCCAAACATAAAAGG+GGG | 0.697648 | 7.3:-5840838 | MS.gene22505:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATATAACAAACTTTTTT+TGG | + | chr7.3:5839852-5839871 | None:intergenic | 10.0% |
| !! | ACTCTCATAATTATAATAAT+AGG | - | chr7.3:5840437-5840456 | MS.gene22505:intron | 15.0% |
| !! | AACTTGTAAACAATTATTTC+AGG | - | chr7.3:5840616-5840635 | MS.gene22505:CDS | 20.0% |
| !! | TGAAGGAAATTTAGAAAATT+TGG | - | chr7.3:5840870-5840889 | MS.gene22505:CDS | 20.0% |
| !!! | AAACATATATTTTACTAGCA+TGG | + | chr7.3:5840373-5840392 | None:intergenic | 20.0% |
| !!! | ATATTTTTTGTAGTTTCTGA+AGG | - | chr7.3:5839886-5839905 | MS.gene22505:intron | 20.0% |
| !!! | ATTGTTAACTTGAATCATAT+TGG | + | chr7.3:5840212-5840231 | None:intergenic | 20.0% |
| !!! | ATTTTACTGTACTCAAATAT+AGG | - | chr7.3:5840727-5840746 | MS.gene22505:CDS | 20.0% |
| ! | AGTAGATTATTTCACTATCT+TGG | - | chr7.3:5840588-5840607 | MS.gene22505:CDS | 25.0% |
| ! | ATTCCATCTAGTAATTAAAC+TGG | - | chr7.3:5840560-5840579 | MS.gene22505:CDS | 25.0% |
| ! | TAACCAGTTTAATTACTAGA+TGG | + | chr7.3:5840566-5840585 | None:intergenic | 25.0% |
| ! | TATCATGTTAGTATATCCAA+CGG | - | chr7.3:5840470-5840489 | MS.gene22505:intron | 25.0% |
| ! | TTGAGTACAGTAAAATTTCT+GGG | + | chr7.3:5840723-5840742 | None:intergenic | 25.0% |
| ! | TTTGAGTACAGTAAAATTTC+TGG | + | chr7.3:5840724-5840743 | None:intergenic | 25.0% |
| !! | ACACAAATTATTTGTTTCTC+AGG | - | chr7.3:5840974-5840993 | MS.gene22505:intron | 25.0% |
| !!! | GTTATGTTATTTCAAGTTGA+AGG | - | chr7.3:5840853-5840872 | MS.gene22505:CDS | 25.0% |
| AACAATTATTTCAGGCATGA+TGG | - | chr7.3:5840624-5840643 | MS.gene22505:CDS | 30.0% | |
| AGGGGGAAAATATTATTGAA+CGG | - | chr7.3:5840031-5840050 | MS.gene22505:CDS | 30.0% | |
| ATCATGTTAGTATATCCAAC+GGG | - | chr7.3:5840471-5840490 | MS.gene22505:intron | 30.0% | |
| ATGTAAATTTGAAGGGCAAA+GGG | - | chr7.3:5840158-5840177 | MS.gene22505:intron | 30.0% | |
| ATTAAGAATCAAGCATAACC+AGG | + | chr7.3:5840914-5840933 | None:intergenic | 30.0% | |
| CAAATATAGGATGATGTCTT+TGG | - | chr7.3:5840740-5840759 | MS.gene22505:CDS | 30.0% | |
| GAAAATATTATTGAACGGTG+TGG | - | chr7.3:5840036-5840055 | MS.gene22505:intron | 30.0% | |
| GAATCTGAAAAACTGTCAAA+TGG | - | chr7.3:5839986-5840005 | MS.gene22505:CDS | 30.0% | |
| GTGCATCATGTAAATTTGAA+GGG | - | chr7.3:5840151-5840170 | MS.gene22505:intron | 30.0% | |
| TGAGTACAGTAAAATTTCTG+GGG | + | chr7.3:5840722-5840741 | None:intergenic | 30.0% | |
| TGTTTCATTGAATGTGTTCA+TGG | - | chr7.3:5840944-5840963 | MS.gene22505:CDS | 30.0% | |
| ! | AATATATGTTTTGCACCATG+TGG | - | chr7.3:5840382-5840401 | MS.gene22505:intron | 30.0% |
| ! | ATCCACGCACTAATTTATTT+TGG | - | chr7.3:5840767-5840786 | MS.gene22505:CDS | 30.0% |
| ! | TATTTTCCCCCTTTTATGTT+TGG | + | chr7.3:5840023-5840042 | None:intergenic | 30.0% |
| AAATATAAAGAAGTCCTGCC+AGG | - | chr7.3:5840235-5840254 | MS.gene22505:intron | 35.0% | |
| AACATAAACTTCGTCTGAGT+TGG | + | chr7.3:5839816-5839835 | None:intergenic | 35.0% | |
| AGTAGCTCCAAACATAAAAG+GGG | - | chr7.3:5840013-5840032 | MS.gene22505:CDS | 35.0% | |
| CAGTAGCTCCAAACATAAAA+GGG | - | chr7.3:5840012-5840031 | MS.gene22505:CDS | 35.0% | |
| CATGTAAATTTGAAGGGCAA+AGG | - | chr7.3:5840157-5840176 | MS.gene22505:intron | 35.0% | |
| CGTGCATCATGTAAATTTGA+AGG | - | chr7.3:5840150-5840169 | MS.gene22505:intron | 35.0% | |
| CTTGAATCATATTGGAGACA+TGG | + | chr7.3:5840204-5840223 | None:intergenic | 35.0% | |
| GAAGCCATCAAAAAGTTCAT+TGG | + | chr7.3:5840408-5840427 | None:intergenic | 35.0% | |
| TAAGAGAGTGATTGAAGGAT+AGG | - | chr7.3:5840494-5840513 | MS.gene22505:intron | 35.0% | |
| TACAACAGATAACCATTGGA+TGG | + | chr7.3:5840317-5840336 | None:intergenic | 35.0% | |
| TACTGTATCATGTCTAATCC+TGG | - | chr7.3:5840893-5840912 | MS.gene22505:CDS | 35.0% | |
| TGCATACAACAGATAACCAT+TGG | + | chr7.3:5840321-5840340 | None:intergenic | 35.0% | |
| TGCCAAAATAAATTAGTGCG+TGG | + | chr7.3:5840772-5840791 | None:intergenic | 35.0% | |
| TGTAAATTTGAAGGGCAAAG+GGG | - | chr7.3:5840159-5840178 | MS.gene22505:intron | 35.0% | |
| ! | ATTGTGTTTTCCATTGACCT+TGG | + | chr7.3:5840125-5840144 | None:intergenic | 35.0% |
| ! | ATTTGACTTATCAAACGACC+AGG | - | chr7.3:5840801-5840820 | MS.gene22505:CDS | 35.0% |
| ! | GGCAGGACTTCTTTATATTT+TGG | + | chr7.3:5840235-5840254 | None:intergenic | 35.0% |
| ! | TCTAGAGTAGATCAAATACC+GGG | - | chr7.3:5841008-5841027 | MS.gene22505:intron | 35.0% |
| ! | TTGTGTTTTCCATTGACCTT+GGG | + | chr7.3:5840124-5840143 | None:intergenic | 35.0% |
| ! | TTTTACTAGCATGGATGATC+AGG | + | chr7.3:5840364-5840383 | None:intergenic | 35.0% |
| !! | CTCTAGAGTAGATCAAATAC+CGG | - | chr7.3:5841007-5841026 | MS.gene22505:intron | 35.0% |
| AAGCCCATAAAATTGCCTCA+TGG | - | chr7.3:5840272-5840291 | MS.gene22505:intron | 40.0% | |
| ACTCACCACACAAGAACATA+CGG | + | chr7.3:5840686-5840705 | None:intergenic | 40.0% | |
| ACTGTCCTTCAGAGTAAGAA+TGG | - | chr7.3:5840085-5840104 | MS.gene22505:intron | 40.0% | |
| ACTTTCTCAGTGATTCTGAC+GGG | - | chr7.3:5839957-5839976 | MS.gene22505:intron | 40.0% | |
| AGAGTGATTGAAGGATAGGA+TGG | - | chr7.3:5840498-5840517 | MS.gene22505:intron | 40.0% | |
| CAAAAAGTTCATTGGCCACA+TGG | + | chr7.3:5840400-5840419 | None:intergenic | 40.0% | |
| CACTTCCATTCTTACTCTGA+AGG | + | chr7.3:5840093-5840112 | None:intergenic | 40.0% | |
| CCAGTAGCTCCAAACATAAA+AGG | - | chr7.3:5840011-5840030 | MS.gene22505:CDS | 40.0% | |
| CCTCATGGCACAATATAGAA+GGG | - | chr7.3:5840287-5840306 | MS.gene22505:intron | 40.0% | |
| GACTTTCTCAGTGATTCTGA+CGG | - | chr7.3:5839956-5839975 | MS.gene22505:intron | 40.0% | |
| GTAGCTCCAAACATAAAAGG+GGG | - | chr7.3:5840014-5840033 | MS.gene22505:CDS | 40.0% | |
| TTCTGTAGTGATATCAGCAG+CGG | + | chr7.3:5839927-5839946 | None:intergenic | 40.0% | |
| ! | AGATCAAATACCGGGTGTTT+TGG | - | chr7.3:5841016-5841035 | MS.gene22505:intron | 40.0% |
| ! | CAGTAAAATTTCTGGGGACT+TGG | + | chr7.3:5840716-5840735 | None:intergenic | 40.0% |
| ! | GATCAAATACCGGGTGTTTT+GGG | - | chr7.3:5841017-5841036 | MS.gene22505:intron | 40.0% |
| ! | GTGCCATGAGGCAATTTTAT+GGG | + | chr7.3:5840278-5840297 | None:intergenic | 40.0% |
| ! | GTGGCCAATGAACTTTTTGA+TGG | - | chr7.3:5840401-5840420 | MS.gene22505:intron | 40.0% |
| ! | TGTGCCATGAGGCAATTTTA+TGG | + | chr7.3:5840279-5840298 | None:intergenic | 40.0% |
| !! | AGAGTAAGAATGGAAGTGCT+TGG | - | chr7.3:5840095-5840114 | MS.gene22505:intron | 40.0% |
| !! | CCTTTTATGTTTGGAGCTAC+TGG | + | chr7.3:5840014-5840033 | None:intergenic | 40.0% |
| ACATACGGCTATGTCTGAAG+TGG | + | chr7.3:5840671-5840690 | None:intergenic | 45.0% | |
| ACGGGTAAGAGAGTGATTGA+AGG | - | chr7.3:5840489-5840508 | MS.gene22505:intron | 45.0% | |
| CATAGCCGTATGTTCTTGTG+TGG | - | chr7.3:5840678-5840697 | MS.gene22505:CDS | 45.0% | |
| CCCTTCTATATTGTGCCATG+AGG | + | chr7.3:5840290-5840309 | None:intergenic | 45.0% | |
| CTTTCTCAGTGATTCTGACG+GGG | - | chr7.3:5839958-5839977 | MS.gene22505:intron | 45.0% | |
| GATCAGGAAGCTTACCTCTT+CGG | + | chr7.3:5840348-5840367 | None:intergenic | 45.0% | |
| GCCTCATGGCACAATATAGA+AGG | - | chr7.3:5840286-5840305 | MS.gene22505:intron | 45.0% | |
| GCTTGCCAACTTTCTAAACC+TGG | + | chr7.3:5840256-5840275 | None:intergenic | 45.0% | |
| GTTGTATGCATAGACCGAAG+AGG | - | chr7.3:5840331-5840350 | MS.gene22505:intron | 45.0% | |
| TATTTCAGGCATGATGGCTG+AGG | - | chr7.3:5840630-5840649 | MS.gene22505:CDS | 45.0% | |
| TCAATCACTCTCTTACCCGT+TGG | + | chr7.3:5840489-5840508 | None:intergenic | 45.0% | |
| TCCTGCCAGGTTTAGAAAGT+TGG | - | chr7.3:5840248-5840267 | MS.gene22505:intron | 45.0% | |
| !! | TAGAAGGGCATTCCATCCAA+TGG | - | chr7.3:5840302-5840321 | MS.gene22505:intron | 45.0% |
| !!! | AAATACCGGGTGTTTTGGGA+TGG | - | chr7.3:5841021-5841040 | MS.gene22505:intron | 45.0% |
| AAAGGGGACATGATGCTGCA+GGG | - | chr7.3:5840175-5840194 | MS.gene22505:CDS | 50.0% | |
| CCAAGCCTGATGGAAAACCA+TGG | - | chr7.3:5841062-5841081 | MS.gene22505:intron | 50.0% | |
| CTTATCAAACGACCAGGCTG+AGG | - | chr7.3:5840807-5840826 | MS.gene22505:CDS | 50.0% | |
| GCCAACTTTCTAAACCTGGC+AGG | + | chr7.3:5840252-5840271 | None:intergenic | 50.0% | |
| GTAGACCATCCCAAAACACC+CGG | + | chr7.3:5841029-5841048 | None:intergenic | 50.0% | |
| ! | CCATGGTTTTCCATCAGGCT+TGG | + | chr7.3:5841065-5841084 | None:intergenic | 50.0% |
| ! | GAACGCCATGGTTTTCCATC+AGG | + | chr7.3:5841070-5841089 | None:intergenic | 50.0% |
| ! | GATGGTCTACTGGCTGTAGT+TGG | - | chr7.3:5841039-5841058 | MS.gene22505:intron | 50.0% |
| !!! | GGTGTTTTGGGATGGTCTAC+TGG | - | chr7.3:5841029-5841048 | MS.gene22505:intron | 50.0% |
| AACGACCAGGCTGAGGTTGA+TGG | - | chr7.3:5840814-5840833 | MS.gene22505:CDS | 55.0% | |
| CAAAGGGGACATGATGCTGC+AGG | - | chr7.3:5840174-5840193 | MS.gene22505:intron | 55.0% | |
| CTGTAGTTGGCCAAGCCTGA+TGG | - | chr7.3:5841052-5841071 | MS.gene22505:intron | 55.0% | |
| GCTTGGACACCCAAGGTCAA+TGG | - | chr7.3:5840112-5840131 | MS.gene22505:intron | 55.0% | |
| !! | TGGAAGTGCTTGGACACCCA+AGG | - | chr7.3:5840105-5840124 | MS.gene22505:intron | 55.0% |
| GGCTGAGGTCGCTACAGCAT+TGG | - | chr7.3:5840645-5840664 | MS.gene22505:CDS | 60.0% | |
| TTCCGCCATCAACCTCAGCC+TGG | + | chr7.3:5840822-5840841 | None:intergenic | 60.0% | |
| !! | AGGCTGAGGTTGATGGCGGA+AGG | - | chr7.3:5840821-5840840 | MS.gene22505:CDS | 60.0% |
| !! | GACCAGGCTGAGGTTGATGG+CGG | - | chr7.3:5840817-5840836 | MS.gene22505:CDS | 60.0% |
| !! | GCTGAGGTTGATGGCGGAAG+GGG | - | chr7.3:5840823-5840842 | MS.gene22505:CDS | 60.0% |
| !! | GGCTGAGGTTGATGGCGGAA+GGG | - | chr7.3:5840822-5840841 | MS.gene22505:CDS | 60.0% |
| !! | GGTTGATGGCGGAAGGGGAA+TGG | - | chr7.3:5840828-5840847 | MS.gene22505:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 5839774 | 5841100 | 5839774 | ID=MS.gene22505 |
| chr7.3 | mRNA | 5839774 | 5841100 | 5839774 | ID=MS.gene22505.t1;Parent=MS.gene22505 |
| chr7.3 | exon | 5841095 | 5841100 | 5841095 | ID=MS.gene22505.t1.exon1;Parent=MS.gene22505.t1 |
| chr7.3 | CDS | 5841095 | 5841100 | 5841095 | ID=cds.MS.gene22505.t1;Parent=MS.gene22505.t1 |
| chr7.3 | exon | 5840522 | 5840975 | 5840522 | ID=MS.gene22505.t1.exon2;Parent=MS.gene22505.t1 |
| chr7.3 | CDS | 5840522 | 5840975 | 5840522 | ID=cds.MS.gene22505.t1;Parent=MS.gene22505.t1 |
| chr7.3 | exon | 5840175 | 5840236 | 5840175 | ID=MS.gene22505.t1.exon3;Parent=MS.gene22505.t1 |
| chr7.3 | CDS | 5840175 | 5840236 | 5840175 | ID=cds.MS.gene22505.t1;Parent=MS.gene22505.t1 |
| chr7.3 | exon | 5839983 | 5840051 | 5839983 | ID=MS.gene22505.t1.exon4;Parent=MS.gene22505.t1 |
| chr7.3 | CDS | 5839983 | 5840051 | 5839983 | ID=cds.MS.gene22505.t1;Parent=MS.gene22505.t1 |
| chr7.3 | exon | 5839774 | 5839878 | 5839774 | ID=MS.gene22505.t1.exon5;Parent=MS.gene22505.t1 |
| chr7.3 | CDS | 5839774 | 5839878 | 5839774 | ID=cds.MS.gene22505.t1;Parent=MS.gene22505.t1 |
| Gene Sequence |
| Protein sequence |
