Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44356.t1 | XP_024640113.1 | 83.9 | 523 | 80 | 1 | 17 | 539 | 1 | 519 | 4.90E-218 | 767.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44356.t1 | A0A396HNU0 | 83.9 | 523 | 80 | 1 | 17 | 539 | 1 | 519 | 3.5e-218 | 767.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene44356 | 0.822756 | 2.00E-53 | -1.69E-46 |
| MS.gene049254 | MS.gene44356 | 0.848486 | 5.94E-60 | -1.69E-46 |
| MS.gene049343 | MS.gene44356 | 0.80416 | 2.47E-49 | -1.69E-46 |
| MS.gene049350 | MS.gene44356 | 0.816734 | 4.75E-52 | -1.69E-46 |
| MS.gene049368 | MS.gene44356 | 0.808521 | 2.97E-50 | -1.69E-46 |
| MS.gene049404 | MS.gene44356 | 0.825446 | 4.67E-54 | -1.69E-46 |
| MS.gene049499 | MS.gene44356 | 0.811327 | 7.40E-51 | -1.69E-46 |
| MS.gene049711 | MS.gene44356 | 0.824171 | 9.32E-54 | -1.69E-46 |
| MS.gene049850 | MS.gene44356 | 0.836075 | 1.16E-56 | -1.69E-46 |
| MS.gene049983 | MS.gene44356 | 0.807138 | 5.85E-50 | -1.69E-46 |
| MS.gene050355 | MS.gene44356 | 0.804974 | 1.67E-49 | -1.69E-46 |
| MS.gene050559 | MS.gene44356 | 0.807201 | 5.67E-50 | -1.69E-46 |
| MS.gene050561 | MS.gene44356 | 0.800947 | 1.13E-48 | -1.69E-46 |
| MS.gene051198 | MS.gene44356 | 0.830655 | 2.60E-55 | -1.69E-46 |
| MS.gene051247 | MS.gene44356 | 0.812024 | 5.22E-51 | -1.69E-46 |
| MS.gene051279 | MS.gene44356 | 0.829268 | 5.66E-55 | -1.69E-46 |
| MS.gene051332 | MS.gene44356 | 0.803978 | 2.69E-49 | -1.69E-46 |
| MS.gene051613 | MS.gene44356 | 0.802435 | 5.62E-49 | -1.69E-46 |
| MS.gene051628 | MS.gene44356 | 0.800696 | 1.28E-48 | -1.69E-46 |
| MS.gene051676 | MS.gene44356 | 0.801108 | 1.05E-48 | -1.69E-46 |
| MS.gene051719 | MS.gene44356 | 0.812032 | 5.20E-51 | -1.69E-46 |
| MS.gene051720 | MS.gene44356 | 0.818444 | 1.95E-52 | -1.69E-46 |
| MS.gene051744 | MS.gene44356 | 0.841772 | 3.88E-58 | -1.69E-46 |
| MS.gene051957 | MS.gene44356 | 0.806956 | 6.39E-50 | -1.69E-46 |
| MS.gene052168 | MS.gene44356 | 0.800323 | 1.52E-48 | -1.69E-46 |
| MS.gene052463 | MS.gene44356 | 0.805481 | 1.31E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene44356 | 0.821442 | 4.03E-53 | -1.69E-46 |
| MS.gene052519 | MS.gene44356 | 0.821694 | 3.52E-53 | -1.69E-46 |
| MS.gene052582 | MS.gene44356 | 0.845164 | 4.82E-59 | -1.69E-46 |
| MS.gene052584 | MS.gene44356 | 0.841525 | 4.51E-58 | -1.69E-46 |
| MS.gene052773 | MS.gene44356 | 0.809496 | 1.84E-50 | -1.69E-46 |
| MS.gene052863 | MS.gene44356 | 0.807787 | 4.26E-50 | -1.69E-46 |
| MS.gene052867 | MS.gene44356 | 0.801432 | 9.03E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene44356 | 0.813687 | 2.26E-51 | -1.69E-46 |
| MS.gene05308 | MS.gene44356 | 0.802668 | 5.03E-49 | -1.69E-46 |
| MS.gene053122 | MS.gene44356 | 0.802654 | 5.06E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene44356 | 0.812606 | 3.90E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene44356 | 0.855751 | 5.11E-62 | -1.69E-46 |
| MS.gene05364 | MS.gene44356 | 0.815622 | 8.41E-52 | -1.69E-46 |
| MS.gene053966 | MS.gene44356 | 0.804423 | 2.18E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene44356 | 0.820623 | 6.22E-53 | -1.69E-46 |
| MS.gene05423 | MS.gene44356 | 0.82521 | 5.31E-54 | -1.69E-46 |
| MS.gene054576 | MS.gene44356 | 0.815828 | 7.57E-52 | -1.69E-46 |
| MS.gene05458 | MS.gene44356 | 0.829283 | 5.61E-55 | -1.69E-46 |
| MS.gene054651 | MS.gene44356 | 0.857507 | 1.56E-62 | -1.69E-46 |
| MS.gene054709 | MS.gene44356 | 0.803507 | 3.37E-49 | -1.69E-46 |
| MS.gene054775 | MS.gene44356 | 0.820266 | 7.51E-53 | -1.69E-46 |
| MS.gene054991 | MS.gene44356 | 0.81947 | 1.14E-52 | -1.69E-46 |
| MS.gene055166 | MS.gene44356 | 0.802255 | 6.12E-49 | -1.69E-46 |
| MS.gene055228 | MS.gene44356 | 0.815713 | 8.03E-52 | -1.69E-46 |
| MS.gene055464 | MS.gene44356 | 0.807373 | 5.22E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene44356 | 0.807539 | 4.81E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene44356 | 0.827001 | 1.99E-54 | -1.69E-46 |
| MS.gene055468 | MS.gene44356 | 0.803656 | 3.14E-49 | -1.69E-46 |
| MS.gene055586 | MS.gene44356 | 0.808563 | 2.91E-50 | -1.69E-46 |
| MS.gene055589 | MS.gene44356 | 0.80541 | 1.35E-49 | -1.69E-46 |
| MS.gene055694 | MS.gene44356 | 0.811806 | 5.82E-51 | -1.69E-46 |
| MS.gene055778 | MS.gene44356 | 0.81222 | 4.73E-51 | -1.69E-46 |
| MS.gene055818 | MS.gene44356 | 0.831477 | 1.63E-55 | -1.69E-46 |
| MS.gene055841 | MS.gene44356 | 0.810489 | 1.12E-50 | -1.69E-46 |
| MS.gene056050 | MS.gene44356 | 0.827561 | 1.46E-54 | -1.69E-46 |
| MS.gene056162 | MS.gene44356 | 0.842484 | 2.51E-58 | -1.69E-46 |
| MS.gene056215 | MS.gene44356 | 0.809111 | 2.22E-50 | -1.69E-46 |
| MS.gene056308 | MS.gene44356 | 0.815201 | 1.04E-51 | -1.69E-46 |
| MS.gene056366 | MS.gene44356 | 0.844188 | 8.83E-59 | -1.69E-46 |
| MS.gene056595 | MS.gene44356 | 0.839481 | 1.54E-57 | -1.69E-46 |
| MS.gene056776 | MS.gene44356 | 0.824362 | 8.41E-54 | -1.69E-46 |
| MS.gene05686 | MS.gene44356 | 0.818246 | 2.17E-52 | -1.69E-46 |
| MS.gene05690 | MS.gene44356 | 0.823622 | 1.25E-53 | -1.69E-46 |
| MS.gene057027 | MS.gene44356 | 0.803326 | 3.68E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene44356 | 0.81562 | 8.42E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene44356 | 0.837888 | 3.98E-57 | -1.69E-46 |
| MS.gene057414 | MS.gene44356 | 0.807512 | 4.87E-50 | -1.69E-46 |
| MS.gene057444 | MS.gene44356 | 0.804079 | 2.57E-49 | -1.69E-46 |
| MS.gene057598 | MS.gene44356 | 0.800465 | 1.42E-48 | -1.69E-46 |
| MS.gene057611 | MS.gene44356 | 0.801646 | 8.16E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene44356 | 0.80814 | 3.59E-50 | -1.69E-46 |
| MS.gene058010 | MS.gene44356 | 0.80248 | 5.50E-49 | -1.69E-46 |
| MS.gene05847 | MS.gene44356 | 0.811425 | 7.05E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene44356 | 0.862184 | 6.06E-64 | -1.69E-46 |
| MS.gene058783 | MS.gene44356 | 0.811064 | 8.44E-51 | -1.69E-46 |
| MS.gene058829 | MS.gene44356 | 0.818498 | 1.90E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene44356 | 0.81872 | 1.69E-52 | -1.69E-46 |
| MS.gene05897 | MS.gene44356 | 0.804048 | 2.60E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene44356 | 0.808343 | 3.24E-50 | -1.69E-46 |
| MS.gene059625 | MS.gene44356 | 0.846726 | 1.81E-59 | -1.69E-46 |
| MS.gene059842 | MS.gene44356 | 0.803307 | 3.71E-49 | -1.69E-46 |
| MS.gene060365 | MS.gene44356 | 0.831758 | 1.39E-55 | -1.69E-46 |
| MS.gene060521 | MS.gene44356 | 0.816187 | 6.29E-52 | -1.69E-46 |
| MS.gene060587 | MS.gene44356 | 0.80683 | 6.80E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene44356 | 0.822877 | 1.87E-53 | -1.69E-46 |
| MS.gene060937 | MS.gene44356 | 0.819721 | 1.00E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44356.t1 | MTR_5g095400 | 57.576 | 198 | 68 | 4 | 14 | 195 | 2 | 199 | 5.38e-53 | 189 |
| MS.gene44356.t1 | MTR_5g095370 | 53.271 | 214 | 71 | 5 | 1 | 187 | 1 | 212 | 1.52e-50 | 173 |
| MS.gene44356.t1 | MTR_5g095430 | 54.500 | 200 | 69 | 5 | 22 | 199 | 1 | 200 | 1.57e-46 | 171 |
| MS.gene44356.t1 | MTR_5g034000 | 61.654 | 133 | 37 | 3 | 62 | 194 | 4 | 122 | 4.90e-38 | 136 |
| MS.gene44356.t1 | MTR_5g095310 | 66.071 | 112 | 30 | 1 | 22 | 125 | 1 | 112 | 2.48e-35 | 136 |
| MS.gene44356.t1 | MTR_5g094850 | 42.262 | 168 | 74 | 2 | 4 | 148 | 2 | 169 | 4.58e-26 | 112 |
| MS.gene44356.t1 | MTR_5g094850 | 42.262 | 168 | 74 | 2 | 4 | 148 | 2 | 169 | 5.11e-26 | 111 |
| MS.gene44356.t1 | MTR_5g095360 | 66.667 | 87 | 20 | 2 | 48 | 125 | 1 | 87 | 4.27e-25 | 100 |
| MS.gene44356.t1 | MTR_5g094950 | 36.232 | 207 | 91 | 7 | 1 | 174 | 1 | 199 | 2.17e-19 | 92.0 |
| MS.gene44356.t1 | MTR_5g094960 | 39.634 | 164 | 91 | 3 | 1 | 156 | 1 | 164 | 3.61e-19 | 90.9 |
| MS.gene44356.t1 | MTR_5g094990 | 37.234 | 188 | 79 | 5 | 1 | 150 | 1 | 187 | 7.06e-18 | 87.0 |
| MS.gene44356.t1 | MTR_5g094920 | 42.636 | 129 | 70 | 3 | 1 | 126 | 1 | 128 | 4.78e-17 | 84.7 |
| MS.gene44356.t1 | MTR_5g095390 | 42.105 | 152 | 53 | 5 | 5 | 132 | 3 | 143 | 4.03e-16 | 80.5 |
| MS.gene44356.t1 | MTR_5g095050 | 32.663 | 199 | 94 | 4 | 1 | 159 | 1 | 199 | 1.75e-14 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44356.t1 | AT3G05850 | 35.938 | 128 | 79 | 2 | 406 | 531 | 206 | 332 | 4.47e-16 | 82.0 |
| MS.gene44356.t1 | AT1G06740 | 27.895 | 190 | 122 | 5 | 360 | 542 | 113 | 294 | 7.99e-15 | 78.2 |
Find 96 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAGACCCAGGTTCGGTTTC+GGG | 0.153720 | 5.1:-24898945 | None:intergenic |
| ATACCCGCATAACTCATATT+TGG | 0.224107 | 5.1:-24903755 | None:intergenic |
| TCCTGATCGGTACTCCTATT+TGG | 0.236061 | 5.1:+24902950 | MS.gene44356:CDS |
| AAACATGAGCATTCAAGATT+TGG | 0.255671 | 5.1:+24898992 | MS.gene44356:CDS |
| TTTCCTTTGATACCTCTATT+AGG | 0.262376 | 5.1:-24903404 | None:intergenic |
| GAAGTTAAGAAAACTAGTTT+AGG | 0.304656 | 5.1:+24899212 | MS.gene44356:CDS |
| ACGAGACCCAGGTTCGGTTT+CGG | 0.309512 | 5.1:-24898946 | None:intergenic |
| AAGTTAAGAAAACTAGTTTA+GGG | 0.326960 | 5.1:+24899213 | MS.gene44356:CDS |
| AACTCACTAAGTATAATATC+AGG | 0.335954 | 5.1:-24903194 | None:intergenic |
| ATCAATAATGGACTCAATAA+TGG | 0.336122 | 5.1:+24903002 | MS.gene44356:CDS |
| TCGGTACTCCTATTTGGATT+TGG | 0.336972 | 5.1:+24902956 | MS.gene44356:CDS |
| CTAGAAGTTGGTCTATTGTT+TGG | 0.346137 | 5.1:+24903461 | MS.gene44356:CDS |
| GAAGTTAGAAAGCAAGTTAA+AGG | 0.346938 | 5.1:+24903727 | MS.gene44356:CDS |
| AGAAAAGAAGAACAATGATT+TGG | 0.350025 | 5.1:+24899259 | MS.gene44356:CDS |
| ATCTTATATGTTATCCCATC+TGG | 0.354321 | 5.1:-24903629 | None:intergenic |
| GAAGATGTTGATTCTCTGTT+TGG | 0.361541 | 5.1:-24899094 | None:intergenic |
| AGTGGATTGGCTATCAATAA+TGG | 0.373898 | 5.1:+24902990 | MS.gene44356:CDS |
| AAGAGGGGTTTGAGATTAAG+AGG | 0.381353 | 5.1:+24903528 | MS.gene44356:CDS |
| GTCATCAACCAAATCCAAAT+AGG | 0.396507 | 5.1:-24902964 | None:intergenic |
| TCAACAGAAGTTTCAATTTG+AGG | 0.397293 | 5.1:+24899115 | MS.gene44356:CDS |
| AATAAACCCGAAACCGAACC+TGG | 0.404728 | 5.1:+24898939 | MS.gene44356:CDS |
| CAAGAGCTGTTGGATAACTA+TGG | 0.418865 | 5.1:+24903782 | MS.gene44356:CDS |
| GGTGATCAAGGTGCATCATT+AGG | 0.424389 | 5.1:+24899500 | MS.gene44356:CDS |
| AAATGTACACATCCCATGTT+AGG | 0.435203 | 5.1:-24902879 | None:intergenic |
| TCCAAATAGGAGTACCGATC+AGG | 0.438387 | 5.1:-24902951 | None:intergenic |
| ATATCTGCTCATGAATTTGA+AGG | 0.439074 | 5.1:+24903428 | MS.gene44356:CDS |
| TAAAGTTGACCTACATTACT+TGG | 0.445820 | 5.1:-24903812 | None:intergenic |
| TGGGGTGAAAATTAGTGAGT+TGG | 0.449163 | 5.1:+24899343 | MS.gene44356:CDS |
| ACTCAAATGCCACATCTACT+TGG | 0.459803 | 5.1:+24903696 | MS.gene44356:CDS |
| TTCAATTTGAGGAAGAATTG+AGG | 0.460770 | 5.1:+24899126 | MS.gene44356:CDS |
| GAAGAACAATGATTTGGAGT+TGG | 0.466825 | 5.1:+24899265 | MS.gene44356:CDS |
| GATTTGGTTGATGACATTAG+TGG | 0.467108 | 5.1:+24902972 | MS.gene44356:CDS |
| CATGGGATGTGTACATTTGT+TGG | 0.467845 | 5.1:+24902884 | MS.gene44356:CDS |
| TTAGTGAGTTTGATGATGAA+TGG | 0.469717 | 5.1:+24903207 | MS.gene44356:CDS |
| AACGTGCGACGTGGCTCGGA+TGG | 0.474912 | 5.1:+24904008 | MS.gene44356:CDS |
| AAAGAGGAAATGTGTGAGAG+AGG | 0.479885 | 5.1:+24899152 | MS.gene44356:CDS |
| AAGAGGAAATGTGTGAGAGA+GGG | 0.485749 | 5.1:+24899153 | MS.gene44356:CDS |
| GTTTGAACGAGACCCAGGTT+CGG | 0.492231 | 5.1:-24898952 | None:intergenic |
| GGTGAAAATTAGTGAGTTGG+AGG | 0.492346 | 5.1:+24899346 | MS.gene44356:CDS |
| TGGCTATGGTACACCTAACA+TGG | 0.495098 | 5.1:+24902866 | MS.gene44356:CDS |
| ATAAATTGACACTTTAACTT+CGG | 0.498881 | 5.1:-24903381 | None:intergenic |
| GCTAAACGTGCGACGTGGCT+CGG | 0.499279 | 5.1:+24904004 | MS.gene44356:CDS |
| GAAAGTGATGAAATTCTCTC+AGG | 0.500322 | 5.1:+24903257 | MS.gene44356:CDS |
| GTGTCAATTTATCCTAATAG+AGG | 0.512081 | 5.1:+24903392 | MS.gene44356:CDS |
| CATGCATCTCCTGCACCAGA+TGG | 0.517694 | 5.1:+24903614 | MS.gene44356:CDS |
| GGTTGATGACATTAGTGGAT+TGG | 0.519201 | 5.1:+24902977 | MS.gene44356:CDS |
| AGTGGGATGACAGAAAGAAA+TGG | 0.519842 | 5.1:-24903039 | None:intergenic |
| AAAAGGAGGAAGGGTGATCA+AGG | 0.524536 | 5.1:+24899488 | MS.gene44356:CDS |
| TGTTGAAAGTTGATCCTGAT+CGG | 0.525860 | 5.1:+24902937 | MS.gene44356:CDS |
| GAATTGAACCTCCCATGAAA+AGG | 0.526968 | 5.1:+24899471 | MS.gene44356:CDS |
| AGTGAGGCTAGGGTTGATGC+TGG | 0.527054 | 5.1:+24899386 | MS.gene44356:CDS |
| TATGTTATCCCATCTGGTGC+AGG | 0.528276 | 5.1:-24903623 | None:intergenic |
| GTGCTGCAGATGGTTGTTGT+TGG | 0.531203 | 5.1:+24903585 | MS.gene44356:CDS |
| GAAGAAGATTAGTGAGGCTA+GGG | 0.531417 | 5.1:+24899376 | MS.gene44356:CDS |
| GGCATAGAACCAAGTAATGT+AGG | 0.532485 | 5.1:+24903803 | MS.gene44356:CDS |
| AGAGATTGGGAATGAGATTG+TGG | 0.534715 | 5.1:+24899430 | MS.gene44356:CDS |
| GTGAATTGTTGACTTACTAG+TGG | 0.542926 | 5.1:-24903057 | None:intergenic |
| GGAAGAATTGAGGAAGAAAG+AGG | 0.549439 | 5.1:+24899136 | MS.gene44356:CDS |
| TGGTCGTTTGAACGAGACCC+AGG | 0.550224 | 5.1:-24898957 | None:intergenic |
| GGGAAAGTGAAACTAGAAGT+TGG | 0.554485 | 5.1:+24903449 | MS.gene44356:CDS |
| GGAGGTTCAATTCTTTGCAA+AGG | 0.554500 | 5.1:-24899461 | None:intergenic |
| ACGTGCGACGTGGCTCGGAT+GGG | 0.554509 | 5.1:+24904009 | MS.gene44356:CDS |
| GATCCAAATATGAGTTATGC+GGG | 0.556800 | 5.1:+24903752 | MS.gene44356:CDS |
| TATCCTAATAGAGGTATCAA+AGG | 0.564025 | 5.1:+24903401 | MS.gene44356:CDS |
| ACCTCCCATGAAAAGGAGGA+AGG | 0.564040 | 5.1:+24899478 | MS.gene44356:CDS |
| TGAAGAAGATTAGTGAGGCT+AGG | 0.565659 | 5.1:+24899375 | MS.gene44356:CDS |
| TAAGTAATGTTGTATAAACA+TGG | 0.567349 | 5.1:-24903139 | None:intergenic |
| GTGAGGCTAGGGTTGATGCT+GGG | 0.572851 | 5.1:+24899387 | MS.gene44356:CDS |
| TATCTGCTCATGAATTTGAA+GGG | 0.578816 | 5.1:+24903429 | MS.gene44356:CDS |
| CCACATCTACTTGGATTGCA+AGG | 0.580563 | 5.1:+24903705 | MS.gene44356:CDS |
| TATAGAAGAGAGCTCACAAG+TGG | 0.587113 | 5.1:+24902836 | MS.gene44356:intron |
| ATGCATCTCCTGCACCAGAT+GGG | 0.589805 | 5.1:+24903615 | MS.gene44356:CDS |
| ACTCACTAAGTATAATATCA+GGG | 0.594109 | 5.1:-24903193 | None:intergenic |
| CCTCCCATGAAAAGGAGGAA+GGG | 0.594242 | 5.1:+24899479 | MS.gene44356:CDS |
| CATCTCAAGAACATGACTAT+CGG | 0.607263 | 5.1:-24903087 | None:intergenic |
| CAAGTGGAGAACAATGGCTA+TGG | 0.609468 | 5.1:+24902852 | MS.gene44356:CDS |
| CCTTGCAATCCAAGTAGATG+TGG | 0.615060 | 5.1:-24903705 | None:intergenic |
| GTTCGTGTACAAGAATGACC+TGG | 0.619017 | 5.1:-24903665 | None:intergenic |
| TTGAACCTCCCATGAAAAGG+AGG | 0.626318 | 5.1:+24899474 | MS.gene44356:CDS |
| ACTGCTAGATGTGCTGCAGA+TGG | 0.631118 | 5.1:+24903575 | MS.gene44356:CDS |
| TTCAAACGACCATATGAACA+TGG | 0.632439 | 5.1:+24898968 | MS.gene44356:CDS |
| GGGTATGAAACAAGAGCTGT+TGG | 0.632928 | 5.1:+24903772 | MS.gene44356:CDS |
| AATAATGGACTCAATAATGG+AGG | 0.634814 | 5.1:+24903005 | MS.gene44356:CDS |
| TGATCCAAATATGAGTTATG+CGG | 0.636992 | 5.1:+24903751 | MS.gene44356:CDS |
| ATAAACCCGAAACCGAACCT+GGG | 0.644214 | 5.1:+24898940 | MS.gene44356:CDS |
| TACAACATTACTTAATCACG+AGG | 0.647600 | 5.1:+24903148 | MS.gene44356:CDS |
| TTCGTGTACAAGAATGACCT+GGG | 0.654913 | 5.1:-24903664 | None:intergenic |
| GGCTATGGTACACCTAACAT+GGG | 0.658576 | 5.1:+24902867 | MS.gene44356:CDS |
| TGAATTGTTGACTTACTAGT+GGG | 0.663929 | 5.1:-24903056 | None:intergenic |
| GAGATTAACATTGATGAGCA+TGG | 0.664972 | 5.1:+24903314 | MS.gene44356:CDS |
| ATCAATGAAGAAGATTAGTG+AGG | 0.665581 | 5.1:+24899370 | MS.gene44356:CDS |
| GATGATGAATGGAGAGTGAG+TGG | 0.667600 | 5.1:+24903218 | MS.gene44356:CDS |
| AAGATTAAGTCATACAACCC+AGG | 0.678278 | 5.1:+24903647 | MS.gene44356:CDS |
| AGCTCACAAGTGGAGAACAA+TGG | 0.680339 | 5.1:+24902846 | MS.gene44356:CDS |
| GATTGGGAATGAGATTGTGG+AGG | 0.716006 | 5.1:+24899433 | MS.gene44356:CDS |
| ACAACATTACTTAATCACGA+GGG | 0.719512 | 5.1:+24903149 | MS.gene44356:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATGATTTAATTAATATTA+AGG | + | chr5.1:24900621-24900640 | MS.gene44356:intron | 10.0% |
| !! | TAAAAAAAAAGAATATCTTA+CGG | + | chr5.1:24902115-24902134 | MS.gene44356:intron | 10.0% |
| !!! | TACTTTTCTTTTTTTAATTA+CGG | - | chr5.1:24901191-24901210 | None:intergenic | 10.0% |
| !!! | TTTAAAGAATTTAAAATTCT+AGG | - | chr5.1:24901449-24901468 | None:intergenic | 10.0% |
| !! | ACAATTTAAGTGAAATTTAA+CGG | + | chr5.1:24899801-24899820 | MS.gene44356:intron | 15.0% |
| !! | AGAAAAAAAACTGAAATATA+AGG | - | chr5.1:24901256-24901275 | None:intergenic | 15.0% |
| !! | TTTGCAATTTATATCAAAAT+GGG | + | chr5.1:24902559-24902578 | MS.gene44356:intron | 15.0% |
| !!! | AATTAAATCATTGATTTCTT+AGG | - | chr5.1:24900614-24900633 | None:intergenic | 15.0% |
| !!! | ACTTTTCTTTTTTTAATTAC+GGG | - | chr5.1:24901190-24901209 | None:intergenic | 15.0% |
| !!! | AGAGAAAACAATATATTTTT+TGG | - | chr5.1:24900433-24900452 | None:intergenic | 15.0% |
| !!! | TAAGTTATGATTTGTAATTA+AGG | - | chr5.1:24900228-24900247 | None:intergenic | 15.0% |
| !!! | TTTTGCAATTTATATCAAAA+TGG | + | chr5.1:24902558-24902577 | MS.gene44356:intron | 15.0% |
| !! | AAGAAATAAAAATGAGCATA+TGG | - | chr5.1:24901821-24901840 | None:intergenic | 20.0% |
| !! | AATTCCAATCAATTTATGTA+AGG | + | chr5.1:24900704-24900723 | MS.gene44356:intron | 20.0% |
| !! | ATACTCAAATCATAAACAAA+AGG | - | chr5.1:24902160-24902179 | None:intergenic | 20.0% |
| !! | ATCATTAGGTATGAAAATTA+TGG | + | chr5.1:24899514-24899533 | MS.gene44356:intron | 20.0% |
| !! | GAAGAAATGTAATATTATGA+GGG | + | chr5.1:24901398-24901417 | MS.gene44356:intron | 20.0% |
| !! | TAAGGAATTACTATTTCAAT+GGG | + | chr5.1:24900639-24900658 | MS.gene44356:intron | 20.0% |
| !! | TAAGTAATGTTGTATAAACA+TGG | - | chr5.1:24903142-24903161 | None:intergenic | 20.0% |
| !! | TCTTACAGTTATATATACTT+TGG | + | chr5.1:24901497-24901516 | MS.gene44356:intron | 20.0% |
| !! | TGAAAATTCAATAACCAATT+CGG | + | chr5.1:24900665-24900684 | MS.gene44356:intron | 20.0% |
| !! | TGAAGAAATGTAATATTATG+AGG | + | chr5.1:24901397-24901416 | MS.gene44356:intron | 20.0% |
| !! | TTAAGGAATTACTATTTCAA+TGG | + | chr5.1:24900638-24900657 | MS.gene44356:intron | 20.0% |
| !!! | AAGTTAAGAAAACTAGTTTA+GGG | + | chr5.1:24899213-24899232 | MS.gene44356:CDS | 20.0% |
| !!! | AATAAATAAGAGCATATACA+TGG | - | chr5.1:24902031-24902050 | None:intergenic | 20.0% |
| !!! | AATTAAGAATTTTAGAAGCA+TGG | - | chr5.1:24901991-24902010 | None:intergenic | 20.0% |
| !!! | ACAGTTTCTTTTATTCTATT+AGG | + | chr5.1:24902771-24902790 | MS.gene44356:intron | 20.0% |
| !!! | ATAAATTGACACTTTAACTT+CGG | - | chr5.1:24903384-24903403 | None:intergenic | 20.0% |
| !!! | ATTTTGTAAGAGAGTAAATT+GGG | + | chr5.1:24899877-24899896 | MS.gene44356:intron | 20.0% |
| !!! | ATTTTTTGGTAGAGTATAAA+AGG | - | chr5.1:24900419-24900438 | None:intergenic | 20.0% |
| !!! | GTATAATAGTAGTTCTTTTA+GGG | + | chr5.1:24901020-24901039 | MS.gene44356:intron | 20.0% |
| !!! | TAAAAGTGTATATAAGCATA+TGG | - | chr5.1:24901882-24901901 | None:intergenic | 20.0% |
| !!! | TATTTTGTAAGAGAGTAAAT+TGG | + | chr5.1:24899876-24899895 | MS.gene44356:intron | 20.0% |
| !!! | TGTATAATAGTAGTTCTTTT+AGG | + | chr5.1:24901019-24901038 | MS.gene44356:intron | 20.0% |
| !!! | TTAATGCTTGTTCTTATTTA+AGG | + | chr5.1:24900585-24900604 | MS.gene44356:intron | 20.0% |
| ! | AAAATTGTTAGGGACTAATT+TGG | + | chr5.1:24899847-24899866 | MS.gene44356:intron | 25.0% |
| ! | AAATTGTTAGGGACTAATTT+GGG | + | chr5.1:24899848-24899867 | MS.gene44356:intron | 25.0% |
| ! | AACATAAACTCATTTAGCAT+TGG | + | chr5.1:24900153-24900172 | MS.gene44356:intron | 25.0% |
| ! | AACTCACTAAGTATAATATC+AGG | - | chr5.1:24903197-24903216 | None:intergenic | 25.0% |
| ! | AATCATGATTAAGATGTCAA+GGG | + | chr5.1:24900823-24900842 | MS.gene44356:intron | 25.0% |
| ! | ACAATATTAGTTATCACCTA+AGG | - | chr5.1:24899766-24899785 | None:intergenic | 25.0% |
| ! | ACAATGCTAATCTAATCAAT+AGG | - | chr5.1:24901583-24901602 | None:intergenic | 25.0% |
| ! | ACATAAACTCATTTAGCATT+GGG | + | chr5.1:24900154-24900173 | MS.gene44356:intron | 25.0% |
| ! | ACTCACTAAGTATAATATCA+GGG | - | chr5.1:24903196-24903215 | None:intergenic | 25.0% |
| ! | AGAAAAGAAGAACAATGATT+TGG | + | chr5.1:24899259-24899278 | MS.gene44356:CDS | 25.0% |
| ! | AGAACAAGAAAAATGCATTT+GGG | + | chr5.1:24899324-24899343 | MS.gene44356:CDS | 25.0% |
| ! | AGGAAATGTTAGATTTGAAA+TGG | + | chr5.1:24902196-24902215 | MS.gene44356:intron | 25.0% |
| ! | ATATACATGGTTAGTACAAA+AGG | - | chr5.1:24902018-24902037 | None:intergenic | 25.0% |
| ! | ATATATCCAAGCATCTTATA+TGG | + | chr5.1:24902387-24902406 | MS.gene44356:intron | 25.0% |
| ! | ATTTAAGTGAAATTTAACGG+AGG | + | chr5.1:24899804-24899823 | MS.gene44356:intron | 25.0% |
| ! | CAATATTAGTTATCACCTAA+GGG | - | chr5.1:24899765-24899784 | None:intergenic | 25.0% |
| ! | TAAGAGGATAAAAAACGAAA+AGG | + | chr5.1:24903544-24903563 | MS.gene44356:CDS | 25.0% |
| ! | TCAACCTTACATAAATTGAT+TGG | - | chr5.1:24900711-24900730 | None:intergenic | 25.0% |
| ! | TCACATAGATGAAGAAAAAA+GGG | + | chr5.1:24903286-24903305 | MS.gene44356:CDS | 25.0% |
| ! | TGAATAACAAATCTAACAAG+AGG | + | chr5.1:24902617-24902636 | MS.gene44356:intron | 25.0% |
| ! | TTATGTCCTATTGAAATCAA+TGG | + | chr5.1:24900033-24900052 | MS.gene44356:intron | 25.0% |
| ! | TTTAAGTGAAATTTAACGGA+GGG | + | chr5.1:24899805-24899824 | MS.gene44356:intron | 25.0% |
| ! | TTTCCTGTGTAAAATTGTTA+GGG | + | chr5.1:24899837-24899856 | MS.gene44356:intron | 25.0% |
| !! | AAAATCATTTAGAGTGTGTT+TGG | + | chr5.1:24901279-24901298 | MS.gene44356:intron | 25.0% |
| !! | AAACACACTCTAAATGATTT+TGG | - | chr5.1:24901280-24901299 | None:intergenic | 25.0% |
| !! | ATTTCATCACTTTCATTTTG+AGG | - | chr5.1:24903251-24903270 | None:intergenic | 25.0% |
| !! | GAAGTTAAGAAAACTAGTTT+AGG | + | chr5.1:24899212-24899231 | MS.gene44356:CDS | 25.0% |
| !!! | AGAGATTTTGTTATACAAGA+GGG | + | chr5.1:24903512-24903531 | MS.gene44356:CDS | 25.0% |
| !!! | ATCAATAATGGACTCAATAA+TGG | + | chr5.1:24903002-24903021 | MS.gene44356:CDS | 25.0% |
| !!! | TAGAGATTTTGTTATACAAG+AGG | + | chr5.1:24903511-24903530 | MS.gene44356:CDS | 25.0% |
| !!! | TCTTGTTAGATTTGTTATTC+AGG | - | chr5.1:24902618-24902637 | None:intergenic | 25.0% |
| !!! | TTTTTAGGATTACAAGGATT+TGG | + | chr5.1:24901727-24901746 | MS.gene44356:intron | 25.0% |
| AAAAAAACACCGAAAACAAC+AGG | - | chr5.1:24901712-24901731 | None:intergenic | 30.0% | |
| AAAAGCTGTCAAAAATGACA+AGG | - | chr5.1:24902699-24902718 | None:intergenic | 30.0% | |
| AAACATGAGCATTCAAGATT+TGG | + | chr5.1:24898992-24899011 | MS.gene44356:CDS | 30.0% | |
| AAGAAACTGTTAACAATGAC+AGG | - | chr5.1:24902761-24902780 | None:intergenic | 30.0% | |
| ACAACATTACTTAATCACGA+GGG | + | chr5.1:24903149-24903168 | MS.gene44356:CDS | 30.0% | |
| ACAAGTCACTCAAAGTATAT+AGG | + | chr5.1:24904049-24904068 | MS.gene44356:CDS | 30.0% | |
| ACAATTGTCAGAGACTAATT+TGG | - | chr5.1:24899677-24899696 | None:intergenic | 30.0% | |
| ACTGAAATATAAGGTGTGTT+TGG | - | chr5.1:24901247-24901266 | None:intergenic | 30.0% | |
| ACTTTATCGTGCAAGAAAAA+AGG | + | chr5.1:24903829-24903848 | MS.gene44356:CDS | 30.0% | |
| AGAAACTGTTAACAATGACA+GGG | - | chr5.1:24902760-24902779 | None:intergenic | 30.0% | |
| AGATTGTTAGGGGTTAATTT+GGG | + | chr5.1:24899905-24899924 | MS.gene44356:intron | 30.0% | |
| ATATCTGCTCATGAATTTGA+AGG | + | chr5.1:24903428-24903447 | MS.gene44356:CDS | 30.0% | |
| ATCAATGAAGAAGATTAGTG+AGG | + | chr5.1:24899370-24899389 | MS.gene44356:CDS | 30.0% | |
| ATCATGATTCATGACACAAT+TGG | - | chr5.1:24900812-24900831 | None:intergenic | 30.0% | |
| ATCTTATATGTTATCCCATC+TGG | - | chr5.1:24903632-24903651 | None:intergenic | 30.0% | |
| ATTAAAAGCTCTCTTGCATA+AGG | - | chr5.1:24900194-24900213 | None:intergenic | 30.0% | |
| ATTGATGCTCTATACTCATT+TGG | + | chr5.1:24900551-24900570 | MS.gene44356:intron | 30.0% | |
| CTGTTGAAGAAAAAGAGATT+GGG | + | chr5.1:24899417-24899436 | MS.gene44356:CDS | 30.0% | |
| GAACAAGAAAAATGCATTTG+GGG | + | chr5.1:24899325-24899344 | MS.gene44356:CDS | 30.0% | |
| GAAGTTAGAAAGCAAGTTAA+AGG | + | chr5.1:24903727-24903746 | MS.gene44356:CDS | 30.0% | |
| GAATCATGATTAAGATGTCA+AGG | + | chr5.1:24900822-24900841 | MS.gene44356:intron | 30.0% | |
| GAATGGGAACAGTTATTTAA+AGG | + | chr5.1:24900895-24900914 | MS.gene44356:intron | 30.0% | |
| GAGAACAAGAAAAATGCATT+TGG | + | chr5.1:24899323-24899342 | MS.gene44356:CDS | 30.0% | |
| GAGAGATAAAACTAAGATAC+AGG | + | chr5.1:24903902-24903921 | MS.gene44356:intron | 30.0% | |
| GAGGGAATTCAAATACTTTA+AGG | + | chr5.1:24901335-24901354 | MS.gene44356:intron | 30.0% | |
| GTAGGGAAAAATAATCTCTT+GGG | + | chr5.1:24902253-24902272 | MS.gene44356:intron | 30.0% | |
| GTCACATAGATGAAGAAAAA+AGG | + | chr5.1:24903285-24903304 | MS.gene44356:CDS | 30.0% | |
| GTGTCAATTTATCCTAATAG+AGG | + | chr5.1:24903392-24903411 | MS.gene44356:CDS | 30.0% | |
| GTTCCTTAATGATAAGTGTT+GGG | - | chr5.1:24900353-24900372 | None:intergenic | 30.0% | |
| GTTTCCTGTGTAAAATTGTT+AGG | + | chr5.1:24899836-24899855 | MS.gene44356:intron | 30.0% | |
| TAAAGTTGACCTACATTACT+TGG | - | chr5.1:24903815-24903834 | None:intergenic | 30.0% | |
| TACAACATTACTTAATCACG+AGG | + | chr5.1:24903148-24903167 | MS.gene44356:CDS | 30.0% | |
| TAGGGAAAAATAATCTCTTG+GGG | + | chr5.1:24902254-24902273 | MS.gene44356:intron | 30.0% | |
| TATCTGCTCATGAATTTGAA+GGG | + | chr5.1:24903429-24903448 | MS.gene44356:CDS | 30.0% | |
| TCAACAGAAGTTTCAATTTG+AGG | + | chr5.1:24899115-24899134 | MS.gene44356:CDS | 30.0% | |
| TCTCTTACTTGAGTATCTTA+TGG | + | chr5.1:24902084-24902103 | MS.gene44356:intron | 30.0% | |
| TGATCCAAATATGAGTTATG+CGG | + | chr5.1:24903751-24903770 | MS.gene44356:CDS | 30.0% | |
| TGTGTTTGGATGAAGTAATT+TGG | - | chr5.1:24901476-24901495 | None:intergenic | 30.0% | |
| TGTTCTATTGTGTTCTTTGT+AGG | - | chr5.1:24901529-24901548 | None:intergenic | 30.0% | |
| TTAAGGTGAATTCCATTGTT+TGG | + | chr5.1:24901352-24901371 | MS.gene44356:intron | 30.0% | |
| TTCAATTTGAGGAAGAATTG+AGG | + | chr5.1:24899126-24899145 | MS.gene44356:CDS | 30.0% | |
| TTTCCTTTGATACCTCTATT+AGG | - | chr5.1:24903407-24903426 | None:intergenic | 30.0% | |
| ! | ATGTCTTTGTTTGTTTGATG+TGG | + | chr5.1:24901903-24901922 | MS.gene44356:intron | 30.0% |
| ! | GGAAGAAATATGTCATGTTT+TGG | + | chr5.1:24900974-24900993 | MS.gene44356:intron | 30.0% |
| ! | GTATTTGTCACTGTATTGAT+AGG | + | chr5.1:24902176-24902195 | MS.gene44356:intron | 30.0% |
| ! | TATAACTGTAAGAGTGTGTT+TGG | - | chr5.1:24901490-24901509 | None:intergenic | 30.0% |
| ! | TCATGTTTTCCATGTTCATA+TGG | - | chr5.1:24898980-24898999 | None:intergenic | 30.0% |
| ! | TGTCTTTGTTTGTTTGATGT+GGG | + | chr5.1:24901904-24901923 | MS.gene44356:intron | 30.0% |
| ! | TGTGTTTGGATTTAGAGTTT+AGG | - | chr5.1:24901233-24901252 | None:intergenic | 30.0% |
| ! | TGTTTTATACTCCTCATTGT+TGG | + | chr5.1:24901555-24901574 | MS.gene44356:intron | 30.0% |
| ! | TTCCTTAATGATAAGTGTTG+GGG | - | chr5.1:24900352-24900371 | None:intergenic | 30.0% |
| ! | TTTGGATTTAGAGTTTAGGA+GGG | - | chr5.1:24901229-24901248 | None:intergenic | 30.0% |
| !! | AATAATGGACTCAATAATGG+AGG | + | chr5.1:24903005-24903024 | MS.gene44356:CDS | 30.0% |
| !! | ACACAAAGATGCTTACTTTT+TGG | - | chr5.1:24900389-24900408 | None:intergenic | 30.0% |
| !! | ACTTTTTGGTAACACAAAGA+TGG | - | chr5.1:24900375-24900394 | None:intergenic | 30.0% |
| !! | ATTGGACCATTGATTTCAAT+AGG | - | chr5.1:24900042-24900061 | None:intergenic | 30.0% |
| !! | CTTTTTAAGCAGTAAGCTTA+GGG | + | chr5.1:24900953-24900972 | MS.gene44356:intron | 30.0% |
| !! | GAGATTTTGTTATACAAGAG+GGG | + | chr5.1:24903513-24903532 | MS.gene44356:CDS | 30.0% |
| !! | TATCCTAATAGAGGTATCAA+AGG | + | chr5.1:24903401-24903420 | MS.gene44356:CDS | 30.0% |
| !! | TCTTTTTAAGCAGTAAGCTT+AGG | + | chr5.1:24900952-24900971 | MS.gene44356:intron | 30.0% |
| !! | TGAATTGTTGACTTACTAGT+GGG | - | chr5.1:24903059-24903078 | None:intergenic | 30.0% |
| !! | TTAGTGAGTTTGATGATGAA+TGG | + | chr5.1:24903207-24903226 | MS.gene44356:CDS | 30.0% |
| !!! | GGTGTTTTTTTAGGATTACA+AGG | + | chr5.1:24901721-24901740 | MS.gene44356:intron | 30.0% |
| !!! | GGTTTCTAAGGTATTTTACA+TGG | + | chr5.1:24902306-24902325 | MS.gene44356:intron | 30.0% |
| !!! | GTATCTTAGTTTTATCTCTC+TGG | - | chr5.1:24903902-24903921 | None:intergenic | 30.0% |
| !!! | GTTGTTTTCGGTGTTTTTTT+AGG | + | chr5.1:24901712-24901731 | MS.gene44356:intron | 30.0% |
| !!! | TAGAAAAAGAGTTGGTGTTT+TGG | + | chr5.1:24899301-24899320 | MS.gene44356:CDS | 30.0% |
| !!! | TTTCTTGTTCCTGTTGTTTT+CGG | + | chr5.1:24901700-24901719 | MS.gene44356:intron | 30.0% |
| AAAGGTTAATGAGAGAAGAG+AGG | + | chr5.1:24900913-24900932 | MS.gene44356:intron | 35.0% | |
| AAATCTAACAAGAGGTAGAG+AGG | + | chr5.1:24902625-24902644 | MS.gene44356:intron | 35.0% | |
| AAATGTACACATCCCATGTT+AGG | - | chr5.1:24902882-24902901 | None:intergenic | 35.0% | |
| AACAGGACAACAACATTGAT+TGG | - | chr5.1:24900471-24900490 | None:intergenic | 35.0% | |
| AAGATTAAGTCATACAACCC+AGG | + | chr5.1:24903647-24903666 | MS.gene44356:CDS | 35.0% | |
| AAGGTTAATGAGAGAAGAGA+GGG | + | chr5.1:24900914-24900933 | MS.gene44356:intron | 35.0% | |
| AATCAACACACGAATGAAAC+AGG | - | chr5.1:24900488-24900507 | None:intergenic | 35.0% | |
| ACTGAGCTCATGTTATCTTT+AGG | + | chr5.1:24901954-24901973 | MS.gene44356:intron | 35.0% | |
| AGGTTATTCTAGCAATCTGT+TGG | - | chr5.1:24902598-24902617 | None:intergenic | 35.0% | |
| ATACCCGCATAACTCATATT+TGG | - | chr5.1:24903758-24903777 | None:intergenic | 35.0% | |
| ATCAATAGGAACCAACAATG+AGG | - | chr5.1:24901569-24901588 | None:intergenic | 35.0% | |
| ATCCCCAACACTTATCATTA+AGG | + | chr5.1:24900347-24900366 | MS.gene44356:intron | 35.0% | |
| ATGATTAAGATGTCAAGGGT+TGG | + | chr5.1:24900827-24900846 | MS.gene44356:intron | 35.0% | |
| ATTGTAGCACATTATTCCCA+CGG | + | chr5.1:24899692-24899711 | MS.gene44356:intron | 35.0% | |
| CAGATTGTTAGGGGTTAATT+TGG | + | chr5.1:24899904-24899923 | MS.gene44356:intron | 35.0% | |
| CATCTCAAGAACATGACTAT+CGG | - | chr5.1:24903090-24903109 | None:intergenic | 35.0% | |
| CATGATTTCATCTTCCGAAT+TGG | - | chr5.1:24900682-24900701 | None:intergenic | 35.0% | |
| CTTGGGGAAAAAAAAATCCA+GGG | + | chr5.1:24902270-24902289 | MS.gene44356:intron | 35.0% | |
| GAAAGTGATGAAATTCTCTC+AGG | + | chr5.1:24903257-24903276 | MS.gene44356:CDS | 35.0% | |
| GAATCGCGTTCAAATTGTTA+GGG | - | chr5.1:24899615-24899634 | None:intergenic | 35.0% | |
| GAGATTAACATTGATGAGCA+TGG | + | chr5.1:24903314-24903333 | MS.gene44356:CDS | 35.0% | |
| GAGGGAATGTAATGTTATGA+GGG | + | chr5.1:24901317-24901336 | MS.gene44356:intron | 35.0% | |
| GAGGGAATTCAAATACTTTG+AGG | + | chr5.1:24901416-24901435 | MS.gene44356:intron | 35.0% | |
| GATCCAAATATGAGTTATGC+GGG | + | chr5.1:24903752-24903771 | MS.gene44356:CDS | 35.0% | |
| GCTGTTGAAGAAAAAGAGAT+TGG | + | chr5.1:24899416-24899435 | MS.gene44356:CDS | 35.0% | |
| GGTAGGGAAAAATAATCTCT+TGG | + | chr5.1:24902252-24902271 | MS.gene44356:intron | 35.0% | |
| GGTTCCTTAATGATAAGTGT+TGG | - | chr5.1:24900354-24900373 | None:intergenic | 35.0% | |
| GTCATCAACCAAATCCAAAT+AGG | - | chr5.1:24902967-24902986 | None:intergenic | 35.0% | |
| GTGAATTCCATTGTTTGGAT+GGG | + | chr5.1:24901357-24901376 | MS.gene44356:intron | 35.0% | |
| TCTAATTCGATGATGAGTGA+TGG | - | chr5.1:24900109-24900128 | None:intergenic | 35.0% | |
| TCTGAGCTTAGAAAAAGAGT+TGG | + | chr5.1:24899293-24899312 | MS.gene44356:CDS | 35.0% | |
| TCTTGGGGAAAAAAAAATCC+AGG | + | chr5.1:24902269-24902288 | MS.gene44356:intron | 35.0% | |
| TGAATCGCGTTCAAATTGTT+AGG | - | chr5.1:24899616-24899635 | None:intergenic | 35.0% | |
| TGAATTCCATTGTTTGGATG+GGG | + | chr5.1:24901358-24901377 | MS.gene44356:intron | 35.0% | |
| TGAGGGAATGTAATGTTATG+AGG | + | chr5.1:24901316-24901335 | MS.gene44356:intron | 35.0% | |
| TTCAAACGACCATATGAACA+TGG | + | chr5.1:24898968-24898987 | MS.gene44356:CDS | 35.0% | |
| TTGAGTATGAAAACTCCTCT+AGG | - | chr5.1:24900753-24900772 | None:intergenic | 35.0% | |
| ! | AATGGTCCAATTTGTTCAAC+TGG | + | chr5.1:24900051-24900070 | MS.gene44356:intron | 35.0% |
| ! | AGTCCCTAACAATTTTACAC+AGG | - | chr5.1:24899843-24899862 | None:intergenic | 35.0% |
| ! | ATGATTTAAAACACGCCCTT+AGG | + | chr5.1:24899747-24899766 | MS.gene44356:intron | 35.0% |
| ! | ATTTAGAGTGTGTTTGGATG+GGG | + | chr5.1:24901285-24901304 | MS.gene44356:intron | 35.0% |
| ! | ATTTCTAGACTAGAGAAGCA+TGG | - | chr5.1:24900527-24900546 | None:intergenic | 35.0% |
| ! | CATTTAGAGTGTGTTTGGAT+GGG | + | chr5.1:24901284-24901303 | MS.gene44356:intron | 35.0% |
| ! | CATTTAGCATTGGGTTGTTA+TGG | + | chr5.1:24900163-24900182 | MS.gene44356:intron | 35.0% |
| ! | CTAGAAGTTGGTCTATTGTT+TGG | + | chr5.1:24903461-24903480 | MS.gene44356:CDS | 35.0% |
| ! | GAAGAACAATGATTTGGAGT+TGG | + | chr5.1:24899265-24899284 | MS.gene44356:CDS | 35.0% |
| ! | GTTTGGATTTAGAGTTTAGG+AGG | - | chr5.1:24901230-24901249 | None:intergenic | 35.0% |
| ! | TCATTTAGAGTGTGTTTGGA+TGG | + | chr5.1:24901283-24901302 | MS.gene44356:intron | 35.0% |
| ! | TGTTGAAAGTTGATCCTGAT+CGG | + | chr5.1:24902937-24902956 | MS.gene44356:CDS | 35.0% |
| ! | TTGGATTTAGAGTTTAGGAG+GGG | - | chr5.1:24901228-24901247 | None:intergenic | 35.0% |
| ! | TTTCTAGACTAGAGAAGCAT+GGG | - | chr5.1:24900526-24900545 | None:intergenic | 35.0% |
| !! | ACGCGATTCAATTTTGTTTC+TGG | + | chr5.1:24899626-24899645 | MS.gene44356:intron | 35.0% |
| !! | AGTGGATTGGCTATCAATAA+TGG | + | chr5.1:24902990-24903009 | MS.gene44356:CDS | 35.0% |
| !! | CATTTGTTGGTGCATTTTGA+TGG | + | chr5.1:24902897-24902916 | MS.gene44356:CDS | 35.0% |
| !! | GAAGATGTTGATTCTCTGTT+TGG | - | chr5.1:24899097-24899116 | None:intergenic | 35.0% |
| !! | GATTTGGTTGATGACATTAG+TGG | + | chr5.1:24902972-24902991 | MS.gene44356:CDS | 35.0% |
| !! | GTGAATTGTTGACTTACTAG+TGG | - | chr5.1:24903060-24903079 | None:intergenic | 35.0% |
| !! | TAATGATAAGTGTTGGGGAT+GGG | - | chr5.1:24900347-24900366 | None:intergenic | 35.0% |
| !! | TATGAAAACTCCTCTAGGAT+AGG | - | chr5.1:24900748-24900767 | None:intergenic | 35.0% |
| !! | TCATCACTTTCATTTTGAGG+AGG | - | chr5.1:24903248-24903267 | None:intergenic | 35.0% |
| !! | TTAATGATAAGTGTTGGGGA+TGG | - | chr5.1:24900348-24900367 | None:intergenic | 35.0% |
| !!! | CATGTTTTGGAGCTTTTATG+AGG | + | chr5.1:24900987-24901006 | MS.gene44356:intron | 35.0% |
| !!! | GGTATTTTACATGGTGCTAT+TGG | + | chr5.1:24902315-24902334 | MS.gene44356:intron | 35.0% |
| !!! | GTAGTTCTTTTAGGGTGTTT+TGG | + | chr5.1:24901028-24901047 | MS.gene44356:intron | 35.0% |
| !!! | TTCTTTTAGGGTGTTTTGGA+TGG | + | chr5.1:24901032-24901051 | MS.gene44356:intron | 35.0% |
| AAAGAGGAAATGTGTGAGAG+AGG | + | chr5.1:24899152-24899171 | MS.gene44356:CDS | 40.0% | |
| AAAGCTCTCTTGCATAAGGA+AGG | - | chr5.1:24900190-24900209 | None:intergenic | 40.0% | |
| AAGAGGAAATGTGTGAGAGA+GGG | + | chr5.1:24899153-24899172 | MS.gene44356:CDS | 40.0% | |
| AATCATACATGTCGCAGAGA+AGG | - | chr5.1:24899733-24899752 | None:intergenic | 40.0% | |
| AATGACCATTCCTATCCTAG+AGG | + | chr5.1:24900735-24900754 | MS.gene44356:intron | 40.0% | |
| AATTGGGAGCTCAGATTGTT+AGG | + | chr5.1:24899893-24899912 | MS.gene44356:intron | 40.0% | |
| ACTCAAATGCCACATCTACT+TGG | + | chr5.1:24903696-24903715 | MS.gene44356:CDS | 40.0% | |
| AGAGATTGGGAATGAGATTG+TGG | + | chr5.1:24899430-24899449 | MS.gene44356:CDS | 40.0% | |
| AGTGGGATGACAGAAAGAAA+TGG | - | chr5.1:24903042-24903061 | None:intergenic | 40.0% | |
| ATTGGGAGCTCAGATTGTTA+GGG | + | chr5.1:24899894-24899913 | MS.gene44356:intron | 40.0% | |
| CAAGAGCTGTTGGATAACTA+TGG | + | chr5.1:24903782-24903801 | MS.gene44356:CDS | 40.0% | |
| CAAGCACCAGTTGAACAAAT+TGG | - | chr5.1:24900060-24900079 | None:intergenic | 40.0% | |
| CATGGGATGTGTACATTTGT+TGG | + | chr5.1:24902884-24902903 | MS.gene44356:CDS | 40.0% | |
| GAAGAAGATTAGTGAGGCTA+GGG | + | chr5.1:24899376-24899395 | MS.gene44356:CDS | 40.0% | |
| GAATTCCATTGTTTGGATGG+GGG | + | chr5.1:24901359-24901378 | MS.gene44356:intron | 40.0% | |
| GAATTGAACCTCCCATGAAA+AGG | + | chr5.1:24899471-24899490 | MS.gene44356:CDS | 40.0% | |
| GGAAGAATTGAGGAAGAAAG+AGG | + | chr5.1:24899136-24899155 | MS.gene44356:CDS | 40.0% | |
| GGAGGTTCAATTCTTTGCAA+AGG | - | chr5.1:24899464-24899483 | None:intergenic | 40.0% | |
| GGCATAGAACCAAGTAATGT+AGG | + | chr5.1:24903803-24903822 | MS.gene44356:CDS | 40.0% | |
| GGCATATCTGATGGTTTCTA+AGG | + | chr5.1:24902294-24902313 | MS.gene44356:intron | 40.0% | |
| GGGAAAGTGAAACTAGAAGT+TGG | + | chr5.1:24903449-24903468 | MS.gene44356:CDS | 40.0% | |
| GGTCTACAATCTGTTCTCTA+GGG | - | chr5.1:24900791-24900810 | None:intergenic | 40.0% | |
| GGTGAATTCCATTGTTTGGA+TGG | + | chr5.1:24901356-24901375 | MS.gene44356:intron | 40.0% | |
| TACTCAAGTAAGAGACAGCT+TGG | - | chr5.1:24902079-24902098 | None:intergenic | 40.0% | |
| TATAGAAGAGAGCTCACAAG+TGG | + | chr5.1:24902836-24902855 | MS.gene44356:intron | 40.0% | |
| TCGGTACTCCTATTTGGATT+TGG | + | chr5.1:24902956-24902975 | MS.gene44356:CDS | 40.0% | |
| TGAAGAAGATTAGTGAGGCT+AGG | + | chr5.1:24899375-24899394 | MS.gene44356:CDS | 40.0% | |
| TGGGGTGAAAATTAGTGAGT+TGG | + | chr5.1:24899343-24899362 | MS.gene44356:CDS | 40.0% | |
| TGGTCTACAATCTGTTCTCT+AGG | - | chr5.1:24900792-24900811 | None:intergenic | 40.0% | |
| TTAAGATGTCAAGGGTTGGA+AGG | + | chr5.1:24900831-24900850 | MS.gene44356:intron | 40.0% | |
| TTCGTGTACAAGAATGACCT+GGG | - | chr5.1:24903667-24903686 | None:intergenic | 40.0% | |
| ! | AACTTCGGCAGAATTTTCAG+AGG | - | chr5.1:24903369-24903388 | None:intergenic | 40.0% |
| ! | AAGAGGGGTTTGAGATTAAG+AGG | + | chr5.1:24903528-24903547 | MS.gene44356:CDS | 40.0% |
| ! | ATATATGATGACGACGACGA+TGG | - | chr5.1:24902373-24902392 | None:intergenic | 40.0% |
| ! | GGTGAAAATTAGTGAGTTGG+AGG | + | chr5.1:24899346-24899365 | MS.gene44356:CDS | 40.0% |
| ! | TCAAGCTTCAAGTTTGCGAA+AGG | + | chr5.1:24902666-24902685 | MS.gene44356:intron | 40.0% |
| ! | TTTAGAGTGTGTTTGGATGG+GGG | + | chr5.1:24901286-24901305 | MS.gene44356:intron | 40.0% |
| !! | AAACTCCTCTAGGATAGGAA+TGG | - | chr5.1:24900743-24900762 | None:intergenic | 40.0% |
| !! | GGTTGATGACATTAGTGGAT+TGG | + | chr5.1:24902977-24902996 | MS.gene44356:CDS | 40.0% |
| !! | TTTAGGGTGTTTTGGATGGA+GGG | + | chr5.1:24901036-24901055 | MS.gene44356:intron | 40.0% |
| !!! | TTTTAGGGTGTTTTGGATGG+AGG | + | chr5.1:24901035-24901054 | MS.gene44356:intron | 40.0% |
| AAAAAGCTAAACGTGCGACG+TGG | + | chr5.1:24903999-24904018 | MS.gene44356:CDS | 45.0% | |
| AAAAGGAGGAAGGGTGATCA+AGG | + | chr5.1:24899488-24899507 | MS.gene44356:CDS | 45.0% | |
| AATAAACCCGAAACCGAACC+TGG | + | chr5.1:24898939-24898958 | MS.gene44356:CDS | 45.0% | |
| ACATTCCCCCATCCAAACAA+TGG | - | chr5.1:24901367-24901386 | None:intergenic | 45.0% | |
| ACCCTCAATGATAAAGGGGT+AGG | + | chr5.1:24902235-24902254 | MS.gene44356:intron | 45.0% | |
| AGCTCACAAGTGGAGAACAA+TGG | + | chr5.1:24902846-24902865 | MS.gene44356:CDS | 45.0% | |
| AGCTCCACCCTCAATGATAA+AGG | + | chr5.1:24902229-24902248 | MS.gene44356:intron | 45.0% | |
| AGGCTCGAGAAAATGGTTGA+AGG | + | chr5.1:24900865-24900884 | MS.gene44356:intron | 45.0% | |
| ATAAACCCGAAACCGAACCT+GGG | + | chr5.1:24898940-24898959 | MS.gene44356:CDS | 45.0% | |
| CAAGTGGAGAACAATGGCTA+TGG | + | chr5.1:24902852-24902871 | MS.gene44356:CDS | 45.0% | |
| CACAAGAAGGCTCGAGAAAA+TGG | + | chr5.1:24900858-24900877 | MS.gene44356:intron | 45.0% | |
| CAGACGCCATATAAGATGCT+TGG | - | chr5.1:24902396-24902415 | None:intergenic | 45.0% | |
| CCACATCTACTTGGATTGCA+AGG | + | chr5.1:24903705-24903724 | MS.gene44356:CDS | 45.0% | |
| CCCTACCCCTTTATCATTGA+GGG | - | chr5.1:24902239-24902258 | None:intergenic | 45.0% | |
| CCCTCAATGATAAAGGGGTA+GGG | + | chr5.1:24902236-24902255 | MS.gene44356:intron | 45.0% | |
| CCTTGCAATCCAAGTAGATG+TGG | - | chr5.1:24903708-24903727 | None:intergenic | 45.0% | |
| CTCCACCCTCAATGATAAAG+GGG | + | chr5.1:24902231-24902250 | MS.gene44356:intron | 45.0% | |
| GATTGGGAATGAGATTGTGG+AGG | + | chr5.1:24899433-24899452 | MS.gene44356:CDS | 45.0% | |
| GCTCAGTTGTGATTCTATGC+AGG | - | chr5.1:24901941-24901960 | None:intergenic | 45.0% | |
| GCTCCACCCTCAATGATAAA+GGG | + | chr5.1:24902230-24902249 | MS.gene44356:intron | 45.0% | |
| GGCTATGGTACACCTAACAT+GGG | + | chr5.1:24902867-24902886 | MS.gene44356:CDS | 45.0% | |
| GGGGAAAAAAAAATCCAGGG+AGG | + | chr5.1:24902273-24902292 | MS.gene44356:intron | 45.0% | |
| GGGTATGAAACAAGAGCTGT+TGG | + | chr5.1:24903772-24903791 | MS.gene44356:CDS | 45.0% | |
| GGTGATCAAGGTGCATCATT+AGG | + | chr5.1:24899500-24899519 | MS.gene44356:CDS | 45.0% | |
| GTTCGTGTACAAGAATGACC+TGG | - | chr5.1:24903668-24903687 | None:intergenic | 45.0% | |
| TACCCCTTTATCATTGAGGG+TGG | - | chr5.1:24902236-24902255 | None:intergenic | 45.0% | |
| TATGTTATCCCATCTGGTGC+AGG | - | chr5.1:24903626-24903645 | None:intergenic | 45.0% | |
| TCCCTACCCCTTTATCATTG+AGG | - | chr5.1:24902240-24902259 | None:intergenic | 45.0% | |
| TCCTGATCGGTACTCCTATT+TGG | + | chr5.1:24902950-24902969 | MS.gene44356:CDS | 45.0% | |
| TCTCAACTTCTCTCTGCTGT+GGG | + | chr5.1:24899997-24900016 | MS.gene44356:intron | 45.0% | |
| TGGCTATGGTACACCTAACA+TGG | + | chr5.1:24902866-24902885 | MS.gene44356:CDS | 45.0% | |
| TTCTCAACTTCTCTCTGCTG+TGG | + | chr5.1:24899996-24900015 | MS.gene44356:intron | 45.0% | |
| TTGAACCTCCCATGAAAAGG+AGG | + | chr5.1:24899474-24899493 | MS.gene44356:CDS | 45.0% | |
| TTGGGAGCTCAGATTGTTAG+GGG | + | chr5.1:24899895-24899914 | MS.gene44356:intron | 45.0% | |
| ! | ATCACCCTTCCTCCTTTTCA+TGG | - | chr5.1:24899486-24899505 | None:intergenic | 45.0% |
| ! | GGTTGAAGGTGCACTTGAAT+GGG | + | chr5.1:24900879-24900898 | MS.gene44356:intron | 45.0% |
| ! | GTTGGAAGGTACACACAAGA+AGG | + | chr5.1:24900845-24900864 | MS.gene44356:intron | 45.0% |
| ! | TCACCCTTCCTCCTTTTCAT+GGG | - | chr5.1:24899485-24899504 | None:intergenic | 45.0% |
| ! | TGGTTGAAGGTGCACTTGAA+TGG | + | chr5.1:24900878-24900897 | MS.gene44356:intron | 45.0% |
| ! | TTGGATGGGGGAATGTTTTG+AGG | + | chr5.1:24901298-24901317 | MS.gene44356:intron | 45.0% |
| !! | TCCAAATAGGAGTACCGATC+AGG | - | chr5.1:24902954-24902973 | None:intergenic | 45.0% |
| !! | TGGATGGGGGAATGTTTTGA+GGG | + | chr5.1:24901299-24901318 | MS.gene44356:intron | 45.0% |
| AACCATCAGATATGCCTCCC+TGG | - | chr5.1:24902290-24902309 | None:intergenic | 50.0% | |
| ACCTCCCATGAAAAGGAGGA+AGG | + | chr5.1:24899478-24899497 | MS.gene44356:CDS | 50.0% | |
| ACTGCTAGATGTGCTGCAGA+TGG | + | chr5.1:24903575-24903594 | MS.gene44356:CDS | 50.0% | |
| AGAGTTTAGGAGGGGCAAAG+AGG | - | chr5.1:24901220-24901239 | None:intergenic | 50.0% | |
| ATGCATCTCCTGCACCAGAT+GGG | + | chr5.1:24903615-24903634 | MS.gene44356:CDS | 50.0% | |
| CCTCCCATGAAAAGGAGGAA+GGG | + | chr5.1:24899479-24899498 | MS.gene44356:CDS | 50.0% | |
| GTGCTGCAGATGGTTGTTGT+TGG | + | chr5.1:24903585-24903604 | MS.gene44356:CDS | 50.0% | |
| GTTTGAACGAGACCCAGGTT+CGG | - | chr5.1:24898955-24898974 | None:intergenic | 50.0% | |
| TTTAGGAGGGGCAAAGAGGA+GGG | - | chr5.1:24901216-24901235 | None:intergenic | 50.0% | |
| ! | ATCCAGGGAGGCATATCTGA+TGG | + | chr5.1:24902285-24902304 | MS.gene44356:intron | 50.0% |
| CATGCATCTCCTGCACCAGA+TGG | + | chr5.1:24903614-24903633 | MS.gene44356:CDS | 55.0% | |
| CATTATTCCCACGGATCCCC+TGG | + | chr5.1:24899701-24899720 | MS.gene44356:intron | 55.0% | |
| GTTTAGGAGGGGCAAAGAGG+AGG | - | chr5.1:24901217-24901236 | None:intergenic | 55.0% | |
| TGGTCGTTTGAACGAGACCC+AGG | - | chr5.1:24898960-24898979 | None:intergenic | 55.0% | |
| ! | ACGAGACCCAGGTTCGGTTT+CGG | - | chr5.1:24898949-24898968 | None:intergenic | 55.0% |
| ! | CCCTTCCTCCTTTTCATGGG+AGG | - | chr5.1:24899482-24899501 | None:intergenic | 55.0% |
| !! | AGTGAGGCTAGGGTTGATGC+TGG | + | chr5.1:24899386-24899405 | MS.gene44356:CDS | 55.0% |
| !! | GTGAGGCTAGGGTTGATGCT+GGG | + | chr5.1:24899387-24899406 | MS.gene44356:CDS | 55.0% |
| CGCAGAGAAGGCAGCAACCA+GGG | - | chr5.1:24899721-24899740 | None:intergenic | 60.0% | |
| GCAGAGAAGGCAGCAACCAG+GGG | - | chr5.1:24899720-24899739 | None:intergenic | 60.0% | |
| GCTAAACGTGCGACGTGGCT+CGG | + | chr5.1:24904004-24904023 | MS.gene44356:CDS | 60.0% | |
| TCGCAGAGAAGGCAGCAACC+AGG | - | chr5.1:24899722-24899741 | None:intergenic | 60.0% | |
| ! | CGAGACCCAGGTTCGGTTTC+GGG | - | chr5.1:24898948-24898967 | None:intergenic | 60.0% |
| GCAGCAACCAGGGGATCCGT+GGG | - | chr5.1:24899711-24899730 | None:intergenic | 65.0% | |
| ! | AACGTGCGACGTGGCTCGGA+TGG | + | chr5.1:24904008-24904027 | MS.gene44356:CDS | 65.0% |
| ! | ACGTGCGACGTGGCTCGGAT+GGG | + | chr5.1:24904009-24904028 | MS.gene44356:CDS | 65.0% |
| GGCAGCAACCAGGGGATCCG+TGG | - | chr5.1:24899712-24899731 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 24898933 | 24904070 | 24898933 | ID=MS.gene44356 |
| chr5.1 | mRNA | 24898933 | 24904070 | 24898933 | ID=MS.gene44356.t1;Parent=MS.gene44356 |
| chr5.1 | exon | 24898933 | 24899521 | 24898933 | ID=MS.gene44356.t1.exon1;Parent=MS.gene44356.t1 |
| chr5.1 | CDS | 24898933 | 24899521 | 24898933 | ID=cds.MS.gene44356.t1;Parent=MS.gene44356.t1 |
| chr5.1 | exon | 24902841 | 24903850 | 24902841 | ID=MS.gene44356.t1.exon2;Parent=MS.gene44356.t1 |
| chr5.1 | CDS | 24902841 | 24903850 | 24902841 | ID=cds.MS.gene44356.t1;Parent=MS.gene44356.t1 |
| chr5.1 | exon | 24903999 | 24904070 | 24903999 | ID=MS.gene44356.t1.exon3;Parent=MS.gene44356.t1 |
| chr5.1 | CDS | 24903999 | 24904070 | 24903999 | ID=cds.MS.gene44356.t1;Parent=MS.gene44356.t1 |
| Gene Sequence |
| Protein sequence |
