Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38659.t1 | XP_013452347.2 | 60.9 | 184 | 22 | 3 | 1 | 135 | 1 | 183 | 3.60E-42 | 181 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38659.t1 | Q9FLX7 | 75.2 | 101 | 24 | 1 | 1 | 101 | 1 | 100 | 3.4e-33 | 142.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38659.t1 | I3SP15 | 60.9 | 184 | 22 | 3 | 1 | 135 | 1 | 183 | 2.6e-42 | 181.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene38659 | 0.845562 | 3.76E-59 | -1.69E-46 |
| MS.gene049404 | MS.gene38659 | 0.829525 | 4.90E-55 | -1.69E-46 |
| MS.gene049435 | MS.gene38659 | 0.800479 | 1.41E-48 | -1.69E-46 |
| MS.gene049711 | MS.gene38659 | 0.803449 | 3.47E-49 | -1.69E-46 |
| MS.gene049821 | MS.gene38659 | 0.822646 | 2.12E-53 | -1.69E-46 |
| MS.gene049825 | MS.gene38659 | 0.816541 | 5.24E-52 | -1.69E-46 |
| MS.gene049873 | MS.gene38659 | 0.817507 | 3.18E-52 | -1.69E-46 |
| MS.gene049977 | MS.gene38659 | 0.810027 | 1.41E-50 | -1.69E-46 |
| MS.gene050026 | MS.gene38659 | 0.841893 | 3.60E-58 | -1.69E-46 |
| MS.gene050237 | MS.gene38659 | 0.836701 | 8.02E-57 | -1.69E-46 |
| MS.gene050273 | MS.gene38659 | 0.820278 | 7.46E-53 | -1.69E-46 |
| MS.gene050355 | MS.gene38659 | 0.803063 | 4.17E-49 | -1.69E-46 |
| MS.gene050559 | MS.gene38659 | 0.838155 | 3.40E-57 | -1.69E-46 |
| MS.gene050561 | MS.gene38659 | 0.830231 | 3.30E-55 | -1.69E-46 |
| MS.gene050562 | MS.gene38659 | 0.824556 | 7.57E-54 | -1.69E-46 |
| MS.gene050750 | MS.gene38659 | 0.811561 | 6.58E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene38659 | 0.810961 | 8.89E-51 | -1.69E-46 |
| MS.gene050953 | MS.gene38659 | 0.809292 | 2.03E-50 | -1.69E-46 |
| MS.gene051198 | MS.gene38659 | 0.824235 | 9.01E-54 | -1.69E-46 |
| MS.gene051247 | MS.gene38659 | 0.821428 | 4.06E-53 | -1.69E-46 |
| MS.gene051279 | MS.gene38659 | 0.853779 | 1.91E-61 | -1.69E-46 |
| MS.gene051594 | MS.gene38659 | 0.835738 | 1.41E-56 | -1.69E-46 |
| MS.gene051613 | MS.gene38659 | 0.805948 | 1.04E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene38659 | 0.81696 | 4.22E-52 | -1.69E-46 |
| MS.gene051720 | MS.gene38659 | 0.822465 | 2.33E-53 | -1.69E-46 |
| MS.gene051744 | MS.gene38659 | 0.83055 | 2.76E-55 | -1.69E-46 |
| MS.gene051832 | MS.gene38659 | 0.805887 | 1.07E-49 | -1.69E-46 |
| MS.gene05191 | MS.gene38659 | 0.805526 | 1.28E-49 | -1.69E-46 |
| MS.gene051957 | MS.gene38659 | 0.816232 | 6.15E-52 | -1.69E-46 |
| MS.gene052037 | MS.gene38659 | 0.819227 | 1.30E-52 | -1.69E-46 |
| MS.gene052108 | MS.gene38659 | 0.805897 | 1.07E-49 | -1.69E-46 |
| MS.gene052208 | MS.gene38659 | 0.800298 | 1.54E-48 | -1.69E-46 |
| MS.gene052239 | MS.gene38659 | -0.849083 | 4.06E-60 | -1.69E-46 |
| MS.gene052447 | MS.gene38659 | 0.843427 | 1.41E-58 | -1.69E-46 |
| MS.gene052516 | MS.gene38659 | 0.816805 | 4.58E-52 | -1.69E-46 |
| MS.gene052519 | MS.gene38659 | 0.839638 | 1.41E-57 | -1.69E-46 |
| MS.gene052582 | MS.gene38659 | 0.842341 | 2.74E-58 | -1.69E-46 |
| MS.gene052584 | MS.gene38659 | 0.841298 | 5.17E-58 | -1.69E-46 |
| MS.gene052773 | MS.gene38659 | 0.811498 | 6.79E-51 | -1.69E-46 |
| MS.gene052867 | MS.gene38659 | 0.809071 | 2.27E-50 | -1.69E-46 |
| MS.gene053006 | MS.gene38659 | 0.82951 | 4.94E-55 | -1.69E-46 |
| MS.gene053082 | MS.gene38659 | 0.826674 | 2.38E-54 | -1.69E-46 |
| MS.gene053154 | MS.gene38659 | 0.802572 | 5.26E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene38659 | 0.800996 | 1.11E-48 | -1.69E-46 |
| MS.gene053226 | MS.gene38659 | 0.828415 | 9.11E-55 | -1.69E-46 |
| MS.gene05329 | MS.gene38659 | 0.802459 | 5.55E-49 | -1.69E-46 |
| MS.gene053599 | MS.gene38659 | 0.812258 | 4.64E-51 | -1.69E-46 |
| MS.gene05365 | MS.gene38659 | 0.809263 | 2.06E-50 | -1.69E-46 |
| MS.gene053883 | MS.gene38659 | 0.813977 | 1.95E-51 | -1.69E-46 |
| MS.gene053931 | MS.gene38659 | 0.808306 | 3.30E-50 | -1.69E-46 |
| MS.gene053998 | MS.gene38659 | 0.800113 | 1.68E-48 | -1.69E-46 |
| MS.gene05414 | MS.gene38659 | 0.811346 | 7.33E-51 | -1.69E-46 |
| MS.gene05415 | MS.gene38659 | 0.859658 | 3.55E-63 | -1.69E-46 |
| MS.gene054222 | MS.gene38659 | 0.801277 | 9.71E-49 | -1.69E-46 |
| MS.gene05423 | MS.gene38659 | 0.835053 | 2.10E-56 | -1.69E-46 |
| MS.gene054291 | MS.gene38659 | -0.813692 | 2.25E-51 | -1.69E-46 |
| MS.gene054405 | MS.gene38659 | 0.801001 | 1.11E-48 | -1.69E-46 |
| MS.gene054576 | MS.gene38659 | 0.800003 | 1.77E-48 | -1.69E-46 |
| MS.gene054651 | MS.gene38659 | 0.856197 | 3.79E-62 | -1.69E-46 |
| MS.gene054775 | MS.gene38659 | 0.803877 | 2.83E-49 | -1.69E-46 |
| MS.gene054991 | MS.gene38659 | 0.802832 | 4.65E-49 | -1.69E-46 |
| MS.gene055228 | MS.gene38659 | 0.843411 | 1.42E-58 | -1.69E-46 |
| MS.gene055465 | MS.gene38659 | 0.800566 | 1.36E-48 | -1.69E-46 |
| MS.gene055466 | MS.gene38659 | 0.807858 | 4.12E-50 | -1.69E-46 |
| MS.gene05548 | MS.gene38659 | 0.800457 | 1.43E-48 | -1.69E-46 |
| MS.gene055586 | MS.gene38659 | 0.810953 | 8.92E-51 | -1.69E-46 |
| MS.gene055694 | MS.gene38659 | 0.816593 | 5.11E-52 | -1.69E-46 |
| MS.gene055724 | MS.gene38659 | 0.801469 | 8.87E-49 | -1.69E-46 |
| MS.gene055778 | MS.gene38659 | 0.840106 | 1.06E-57 | -1.69E-46 |
| MS.gene055808 | MS.gene38659 | 0.813038 | 3.13E-51 | -1.69E-46 |
| MS.gene055818 | MS.gene38659 | 0.835266 | 1.86E-56 | -1.69E-46 |
| MS.gene055841 | MS.gene38659 | 0.821586 | 3.73E-53 | -1.69E-46 |
| MS.gene055952 | MS.gene38659 | 0.823891 | 1.08E-53 | -1.69E-46 |
| MS.gene056050 | MS.gene38659 | 0.807644 | 4.57E-50 | -1.69E-46 |
| MS.gene056162 | MS.gene38659 | 0.801167 | 1.02E-48 | -1.69E-46 |
| MS.gene056174 | MS.gene38659 | 0.847662 | 1.00E-59 | -1.69E-46 |
| MS.gene056272 | MS.gene38659 | 0.815446 | 9.20E-52 | -1.69E-46 |
| MS.gene056308 | MS.gene38659 | 0.811838 | 5.73E-51 | -1.69E-46 |
| MS.gene056366 | MS.gene38659 | 0.841747 | 3.94E-58 | -1.69E-46 |
| MS.gene056498 | MS.gene38659 | 0.826585 | 2.50E-54 | -1.69E-46 |
| MS.gene056506 | MS.gene38659 | 0.80717 | 5.76E-50 | -1.69E-46 |
| MS.gene056776 | MS.gene38659 | 0.830402 | 3.00E-55 | -1.69E-46 |
| MS.gene05686 | MS.gene38659 | 0.831606 | 1.52E-55 | -1.69E-46 |
| MS.gene05690 | MS.gene38659 | 0.819005 | 1.46E-52 | -1.69E-46 |
| MS.gene057060 | MS.gene38659 | 0.850919 | 1.24E-60 | -1.69E-46 |
| MS.gene057102 | MS.gene38659 | 0.823127 | 1.64E-53 | -1.69E-46 |
| MS.gene057208 | MS.gene38659 | 0.827548 | 1.47E-54 | -1.69E-46 |
| MS.gene057314 | MS.gene38659 | 0.817222 | 3.69E-52 | -1.69E-46 |
| MS.gene057414 | MS.gene38659 | 0.811409 | 7.10E-51 | -1.69E-46 |
| MS.gene057444 | MS.gene38659 | 0.855666 | 5.41E-62 | -1.69E-46 |
| MS.gene057598 | MS.gene38659 | 0.806798 | 6.91E-50 | -1.69E-46 |
| MS.gene057693 | MS.gene38659 | 0.80976 | 1.61E-50 | -1.69E-46 |
| MS.gene057705 | MS.gene38659 | 0.802466 | 5.54E-49 | -1.69E-46 |
| MS.gene05795 | MS.gene38659 | 0.803658 | 3.14E-49 | -1.69E-46 |
| MS.gene058008 | MS.gene38659 | 0.811291 | 7.53E-51 | -1.69E-46 |
| MS.gene058009 | MS.gene38659 | 0.821423 | 4.07E-53 | -1.69E-46 |
| MS.gene058037 | MS.gene38659 | 0.841397 | 4.87E-58 | -1.69E-46 |
| MS.gene058279 | MS.gene38659 | 0.80863 | 2.82E-50 | -1.69E-46 |
| MS.gene058294 | MS.gene38659 | 0.837446 | 5.17E-57 | -1.69E-46 |
| MS.gene058625 | MS.gene38659 | 0.831514 | 1.60E-55 | -1.69E-46 |
| MS.gene058635 | MS.gene38659 | 0.804559 | 2.04E-49 | -1.69E-46 |
| MS.gene058783 | MS.gene38659 | 0.800428 | 1.45E-48 | -1.69E-46 |
| MS.gene058979 | MS.gene38659 | 0.814485 | 1.50E-51 | -1.69E-46 |
| MS.gene059015 | MS.gene38659 | 0.812429 | 4.26E-51 | -1.69E-46 |
| MS.gene059272 | MS.gene38659 | 0.825739 | 3.98E-54 | -1.69E-46 |
| MS.gene05954 | MS.gene38659 | 0.835445 | 1.67E-56 | -1.69E-46 |
| MS.gene059584 | MS.gene38659 | 0.823114 | 1.65E-53 | -1.69E-46 |
| MS.gene059625 | MS.gene38659 | 0.853107 | 2.97E-61 | -1.69E-46 |
| MS.gene059842 | MS.gene38659 | 0.800475 | 1.42E-48 | -1.69E-46 |
| MS.gene05985 | MS.gene38659 | -0.809619 | 1.73E-50 | -1.69E-46 |
| MS.gene060134 | MS.gene38659 | 0.802192 | 6.31E-49 | -1.69E-46 |
| MS.gene060310 | MS.gene38659 | 0.812358 | 4.41E-51 | -1.69E-46 |
| MS.gene060322 | MS.gene38659 | 0.811198 | 7.89E-51 | -1.69E-46 |
| MS.gene060365 | MS.gene38659 | 0.833349 | 5.61E-56 | -1.69E-46 |
| MS.gene060373 | MS.gene38659 | 0.803431 | 3.50E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene38659 | 0.821461 | 3.99E-53 | -1.69E-46 |
| MS.gene060521 | MS.gene38659 | 0.862198 | 6.01E-64 | -1.69E-46 |
| MS.gene060587 | MS.gene38659 | 0.82758 | 1.45E-54 | -1.69E-46 |
| MS.gene060634 | MS.gene38659 | -0.838003 | 3.72E-57 | -1.69E-46 |
| MS.gene060840 | MS.gene38659 | 0.807789 | 4.26E-50 | -1.69E-46 |
| MS.gene060918 | MS.gene38659 | 0.804838 | 1.78E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38659.t1 | MTR_6g053280 | 60.870 | 184 | 22 | 3 | 1 | 135 | 87 | 269 | 9.67e-61 | 188 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38659.t1 | AT5G52840 | 73.585 | 106 | 27 | 1 | 1 | 106 | 1 | 105 | 1.53e-46 | 147 |
| MS.gene38659.t1 | AT5G52840 | 74.038 | 104 | 26 | 1 | 1 | 104 | 1 | 103 | 2.85e-45 | 145 |
Find 26 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACGATACCCTTTGTCTTC+TGG | 0.257585 | 6.2:-57441536 | None:intergenic |
| CTTTACGCGTCTTGGACTTA+AGG | 0.317074 | 6.2:+57441574 | MS.gene38659:CDS |
| ATTAACACTTCTCTTGCGTT+TGG | 0.354432 | 6.2:-57441473 | None:intergenic |
| AGCGACGGCGCGGCCTTTGA+TGG | 0.367044 | 6.2:+57441406 | MS.gene38659:CDS |
| TTAACACTTCTCTTGCGTTT+GGG | 0.383857 | 6.2:-57441472 | None:intergenic |
| TTTGTCAAGAAGAAGAATAT+TGG | 0.391623 | 6.2:+57441597 | MS.gene38659:CDS |
| TATTGAGAATCGTCTTGGTT+GGG | 0.401668 | 6.2:+57441625 | MS.gene38659:CDS |
| GTTGAAAGCTTTACGCGTCT+TGG | 0.426516 | 6.2:+57441566 | MS.gene38659:CDS |
| GTCTTTATTCTTGCCATCAA+AGG | 0.429853 | 6.2:-57441419 | None:intergenic |
| GACACTAGACGAGATCAAAA+AGG | 0.435244 | 6.2:+57441511 | MS.gene38659:CDS |
| AAACTTATTTGCCTTATGAA+TGG | 0.436503 | 6.2:+57441689 | MS.gene38659:CDS |
| GAATCGTCTTGGTTGGGGTC+AGG | 0.444696 | 6.2:+57441631 | MS.gene38659:CDS |
| GCAAGAATAAAGACAACAAC+AGG | 0.445081 | 6.2:+57441428 | MS.gene38659:CDS |
| CGTCTAGTGTCTTACTATAG+AGG | 0.468796 | 6.2:-57441499 | None:intergenic |
| ACAAGAAAAGATGGTGCTGC+TGG | 0.493227 | 6.2:+57443376 | MS.gene38659:CDS |
| TCAAAGGCCGCGCCGTCGCT+CGG | 0.504223 | 6.2:-57441403 | None:intergenic |
| ATTGAGAATCGTCTTGGTTG+GGG | 0.506457 | 6.2:+57441626 | MS.gene38659:CDS |
| ATGAATATTGAGAATCGTCT+TGG | 0.525507 | 6.2:+57441620 | MS.gene38659:CDS |
| ATATTGAGAATCGTCTTGGT+TGG | 0.528056 | 6.2:+57441624 | MS.gene38659:CDS |
| AAAAGGTTCCAGAAGACAAA+GGG | 0.534276 | 6.2:+57441528 | MS.gene38659:CDS |
| GTAAAATACAGGTTTGTCGA+TGG | 0.573538 | 6.2:+57443327 | MS.gene38659:intron |
| AAGACAACAACAGGAATCGT+AGG | 0.600187 | 6.2:+57441437 | MS.gene38659:CDS |
| GTGGCTGAAACAAGAAAAGA+TGG | 0.607028 | 6.2:+57443367 | MS.gene38659:CDS |
| GGCAAAGATAGAAGAACTTG+TGG | 0.623499 | 6.2:+57443348 | MS.gene38659:CDS |
| GAAGATGTTTCTCCGAGCGA+CGG | 0.629217 | 6.2:+57441391 | None:intergenic |
| TGTTTCTCCGAGCGACGGCG+CGG | 0.678993 | 6.2:+57441396 | MS.gene38659:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTTATTTAATCATATGAT+AGG | - | chr6.2:57441900-57441919 | None:intergenic | 15.0% |
| !! | ATTCTAGTATTTAACTCTAA+TGG | - | chr6.2:57441929-57441948 | None:intergenic | 20.0% |
| !! | CAAAAAAAATACCATTCATA+AGG | - | chr6.2:57441703-57441722 | None:intergenic | 20.0% |
| !! | CAAACAAAAAAATAAACAGA+TGG | - | chr6.2:57442140-57442159 | None:intergenic | 20.0% |
| !! | GATGGTAATTAAATAAAACA+TGG | - | chr6.2:57442122-57442141 | None:intergenic | 20.0% |
| !! | TCATATGATTAAATAACAAG+AGG | + | chr6.2:57441901-57441920 | MS.gene38659:intron | 20.0% |
| !! | TTAAGTAGATTATTAGTAAG+TGG | + | chr6.2:57441874-57441893 | MS.gene38659:intron | 20.0% |
| !! | TTCTAGTATTTAACTCTAAT+GGG | - | chr6.2:57441928-57441947 | None:intergenic | 20.0% |
| !!! | CATCTGTTTATTTTTTTGTT+TGG | + | chr6.2:57442138-57442157 | MS.gene38659:intron | 20.0% |
| !!! | TTCTATGTTGATTAATATGT+GGG | - | chr6.2:57442927-57442946 | None:intergenic | 20.0% |
| !!! | TTGTTTTTCTTTTGTATCAT+CGG | + | chr6.2:57442267-57442286 | MS.gene38659:intron | 20.0% |
| !!! | TTTCTATGTTGATTAATATG+TGG | - | chr6.2:57442928-57442947 | None:intergenic | 20.0% |
| !!! | TTTGTTTTCTCATTGAAAAA+AGG | - | chr6.2:57442885-57442904 | None:intergenic | 20.0% |
| ! | AAACTTATTTGCCTTATGAA+TGG | + | chr6.2:57441689-57441708 | MS.gene38659:CDS | 25.0% |
| ! | AGAATGTTCTCTATATAAAG+CGG | + | chr6.2:57441944-57441963 | MS.gene38659:intron | 25.0% |
| ! | ATGTGGTTACATTCAATTAT+TGG | + | chr6.2:57442725-57442744 | MS.gene38659:intron | 25.0% |
| ! | ATTTCCATTCGTATGAATAA+AGG | + | chr6.2:57442094-57442113 | MS.gene38659:intron | 25.0% |
| ! | TAATTAGTAGGTCGTTAATT+AGG | + | chr6.2:57441850-57441869 | MS.gene38659:intron | 25.0% |
| ! | TCTAGTATTTAACTCTAATG+GGG | - | chr6.2:57441927-57441946 | None:intergenic | 25.0% |
| ! | TTTGTCAAGAAGAAGAATAT+TGG | + | chr6.2:57441597-57441616 | MS.gene38659:CDS | 25.0% |
| !! | GTAACTTATCATATTTTACC+TGG | + | chr6.2:57442344-57442363 | MS.gene38659:intron | 25.0% |
| !! | TGTTTTTCTTTTGTATCATC+GGG | + | chr6.2:57442268-57442287 | MS.gene38659:intron | 25.0% |
| !! | TTCTACTATTTGTTGCAAAT+TGG | + | chr6.2:57441796-57441815 | MS.gene38659:intron | 25.0% |
| !!! | ATGGTATTTTTTTTGTGATC+TGG | + | chr6.2:57441708-57441727 | MS.gene38659:intron | 25.0% |
| !!! | TAAGAAAATAGGTTTTTCGA+AGG | - | chr6.2:57442994-57443013 | None:intergenic | 25.0% |
| !!! | TCATTTGTTGTGTAAAATAC+AGG | + | chr6.2:57443316-57443335 | MS.gene38659:intron | 25.0% |
| !!! | TTAAGAGACTGTATTTTAGA+AGG | - | chr6.2:57443209-57443228 | None:intergenic | 25.0% |
| AAAAAGGTAGTGACTTATGA+AGG | - | chr6.2:57442869-57442888 | None:intergenic | 30.0% | |
| AATTGTGTGAATGAATACTG+AGG | + | chr6.2:57442453-57442472 | MS.gene38659:intron | 30.0% | |
| ACAATAGATACGGTATAACA+AGG | - | chr6.2:57442507-57442526 | None:intergenic | 30.0% | |
| AGGAAAAATGAAGTTGAACT+TGG | - | chr6.2:57442974-57442993 | None:intergenic | 30.0% | |
| AGTTAGGATCTAATATGAGA+GGG | + | chr6.2:57441820-57441839 | MS.gene38659:intron | 30.0% | |
| ATGAATATTGAGAATCGTCT+TGG | + | chr6.2:57441620-57441639 | MS.gene38659:CDS | 30.0% | |
| ATTGTGTGAATGAATACTGA+GGG | + | chr6.2:57442454-57442473 | MS.gene38659:intron | 30.0% | |
| ATTTGTCACACCAAATTACA+GGG | + | chr6.2:57442573-57442592 | MS.gene38659:intron | 30.0% | |
| CCATTCTGTGTAACAAAAAA+TGG | + | chr6.2:57442529-57442548 | MS.gene38659:intron | 30.0% | |
| CTATATAAAGCGGAATTCTT+AGG | + | chr6.2:57441954-57441973 | MS.gene38659:intron | 30.0% | |
| GTCGAAATTACATCAAAAGT+GGG | - | chr6.2:57442842-57442861 | None:intergenic | 30.0% | |
| GTTACTAGAGAAAAACAGAT+TGG | - | chr6.2:57443051-57443070 | None:intergenic | 30.0% | |
| GTTACTGTTAATTCGATTCT+AGG | + | chr6.2:57442170-57442189 | MS.gene38659:intron | 30.0% | |
| TAGTTAGGATCTAATATGAG+AGG | + | chr6.2:57441819-57441838 | MS.gene38659:intron | 30.0% | |
| TGAGCTTATTGGCAATTATT+TGG | + | chr6.2:57441743-57441762 | MS.gene38659:intron | 30.0% | |
| TGTCGAAATTACATCAAAAG+TGG | - | chr6.2:57442843-57442862 | None:intergenic | 30.0% | |
| ! | AAACAGATTGGTGTTCTATT+TGG | - | chr6.2:57443039-57443058 | None:intergenic | 30.0% |
| ! | ACGGAATAACTTTTCTGTTT+AGG | + | chr6.2:57441991-57442010 | MS.gene38659:intron | 30.0% |
| ! | AGTCTCTTAATTTTGTTCAG+TGG | + | chr6.2:57443219-57443238 | MS.gene38659:intron | 30.0% |
| ! | CGGAATAACTTTTCTGTTTA+GGG | + | chr6.2:57441992-57442011 | MS.gene38659:intron | 30.0% |
| ! | TCATTCACACAATTCTAGAA+AGG | - | chr6.2:57442447-57442466 | None:intergenic | 30.0% |
| ! | TTTGTTGCAAATTGGTAGTT+AGG | + | chr6.2:57441804-57441823 | MS.gene38659:intron | 30.0% |
| !! | TTGTGTTTTTGTGAGCTTAT+TGG | + | chr6.2:57441732-57441751 | MS.gene38659:intron | 30.0% |
| !!! | ATTCTTAGGTGTTTTAGAGT+AGG | + | chr6.2:57441968-57441987 | MS.gene38659:intron | 30.0% |
| !!! | CCATTTTTTGTTACACAGAA+TGG | - | chr6.2:57442532-57442551 | None:intergenic | 30.0% |
| !!! | TTCAGTGGTTCTTATTTTTC+TGG | + | chr6.2:57443234-57443253 | MS.gene38659:intron | 30.0% |
| AAAAAGGTTCCAGAAGACAA+AGG | + | chr6.2:57441527-57441546 | MS.gene38659:CDS | 35.0% | |
| AAAAGGTTCCAGAAGACAAA+GGG | + | chr6.2:57441528-57441547 | MS.gene38659:CDS | 35.0% | |
| AGTTGAACTTGGCGATTAAT+TGG | - | chr6.2:57442963-57442982 | None:intergenic | 35.0% | |
| ATATTGAGAATCGTCTTGGT+TGG | + | chr6.2:57441624-57441643 | MS.gene38659:CDS | 35.0% | |
| ATTAACACTTCTCTTGCGTT+TGG | - | chr6.2:57441476-57441495 | None:intergenic | 35.0% | |
| CAGAATGGACACAATAGATA+CGG | - | chr6.2:57442517-57442536 | None:intergenic | 35.0% | |
| CAGATAACGACAGACAAATA+GGG | - | chr6.2:57443173-57443192 | None:intergenic | 35.0% | |
| CTCTATGTTGTTCATTCATG+TGG | + | chr6.2:57442376-57442395 | MS.gene38659:intron | 35.0% | |
| CTGTAATCTTCCCTGTAATT+TGG | - | chr6.2:57442586-57442605 | None:intergenic | 35.0% | |
| GAACAGAAATGTTGACAAAG+AGG | - | chr6.2:57443124-57443143 | None:intergenic | 35.0% | |
| GATTTGTCACACCAAATTAC+AGG | + | chr6.2:57442572-57442591 | MS.gene38659:intron | 35.0% | |
| GCAAGAATAAAGACAACAAC+AGG | + | chr6.2:57441428-57441447 | MS.gene38659:CDS | 35.0% | |
| GCTTATTGGCAATTATTTGG+AGG | + | chr6.2:57441746-57441765 | MS.gene38659:intron | 35.0% | |
| GTAAAATACAGGTTTGTCGA+TGG | + | chr6.2:57443327-57443346 | MS.gene38659:intron | 35.0% | |
| GTCGTTATCTGATATTATCG+AGG | + | chr6.2:57443182-57443201 | MS.gene38659:intron | 35.0% | |
| GTCTTTATTCTTGCCATCAA+AGG | - | chr6.2:57441422-57441441 | None:intergenic | 35.0% | |
| GTTCTATTTGGATACAGTTG+TGG | - | chr6.2:57443027-57443046 | None:intergenic | 35.0% | |
| TATTGAGAATCGTCTTGGTT+GGG | + | chr6.2:57441625-57441644 | MS.gene38659:CDS | 35.0% | |
| TCAGATAACGACAGACAAAT+AGG | - | chr6.2:57443174-57443193 | None:intergenic | 35.0% | |
| TCATGTGGTGTGATGAATTT+GGG | + | chr6.2:57442391-57442410 | MS.gene38659:intron | 35.0% | |
| TTAACACTTCTCTTGCGTTT+GGG | - | chr6.2:57441475-57441494 | None:intergenic | 35.0% | |
| TTCATGTGGTGTGATGAATT+TGG | + | chr6.2:57442390-57442409 | MS.gene38659:intron | 35.0% | |
| ! | AACATAGAGCATTATGTACC+AGG | - | chr6.2:57442365-57442384 | None:intergenic | 35.0% |
| ! | ATTTGGGATGCTGAAAAACT+GGG | + | chr6.2:57442210-57442229 | MS.gene38659:intron | 35.0% |
| ! | GTTCTAGGCTGTAAGAAAAT+AGG | - | chr6.2:57443005-57443024 | None:intergenic | 35.0% |
| ! | TTTCTTTTGTATCATCGGGT+TGG | + | chr6.2:57442272-57442291 | MS.gene38659:intron | 35.0% |
| ! | TTTTCAGCATCCCAAATGAT+AGG | - | chr6.2:57442207-57442226 | None:intergenic | 35.0% |
| !! | AATTCGATTCTAGGATCCAT+GGG | + | chr6.2:57442179-57442198 | MS.gene38659:intron | 35.0% |
| !! | GAGGGTGTTAAGTAATTAGT+AGG | + | chr6.2:57441838-57441857 | MS.gene38659:intron | 35.0% |
| !! | TAATTCGATTCTAGGATCCA+TGG | + | chr6.2:57442178-57442197 | MS.gene38659:intron | 35.0% |
| !! | TGTGGGTTTTATAGTCTTGA+TGG | - | chr6.2:57442910-57442929 | None:intergenic | 35.0% |
| !!! | GCTTTTTGGGTTCTTCATTA+GGG | - | chr6.2:57443405-57443424 | None:intergenic | 35.0% |
| !!! | GTGGTTCTTATTTTTCTGGT+TGG | + | chr6.2:57443238-57443257 | MS.gene38659:intron | 35.0% |
| !!! | TTAGGTGTTTTAGAGTAGGA+CGG | + | chr6.2:57441972-57441991 | MS.gene38659:intron | 35.0% |
| AAGACAACAACAGGAATCGT+AGG | + | chr6.2:57441437-57441456 | MS.gene38659:CDS | 40.0% | |
| ATCCATGGGTTCCTATCATT+TGG | + | chr6.2:57442193-57442212 | MS.gene38659:intron | 40.0% | |
| ATTGAGAATCGTCTTGGTTG+GGG | + | chr6.2:57441626-57441645 | MS.gene38659:CDS | 40.0% | |
| CGTCTAGTGTCTTACTATAG+AGG | - | chr6.2:57441502-57441521 | None:intergenic | 40.0% | |
| GAATGAATACTGAGGGAAAC+TGG | + | chr6.2:57442461-57442480 | MS.gene38659:intron | 40.0% | |
| GACACTAGACGAGATCAAAA+AGG | + | chr6.2:57441511-57441530 | MS.gene38659:CDS | 40.0% | |
| GGCAAAGATAGAAGAACTTG+TGG | + | chr6.2:57443348-57443367 | MS.gene38659:CDS | 40.0% | |
| GGTGCCTTTATTCATACGAA+TGG | - | chr6.2:57442101-57442120 | None:intergenic | 40.0% | |
| GTGGCTGAAACAAGAAAAGA+TGG | + | chr6.2:57443367-57443386 | MS.gene38659:CDS | 40.0% | |
| TCACTAGTCGTCATAACACA+AGG | - | chr6.2:57443275-57443294 | None:intergenic | 40.0% | |
| TCCATGGGTTCCTATCATTT+GGG | + | chr6.2:57442194-57442213 | MS.gene38659:intron | 40.0% | |
| TGGTATCTGACATCAACATG+TGG | + | chr6.2:57442708-57442727 | MS.gene38659:intron | 40.0% | |
| TGTCAGATACCAACACATGT+CGG | - | chr6.2:57442700-57442719 | None:intergenic | 40.0% | |
| TTACGATACCCTTTGTCTTC+TGG | - | chr6.2:57441539-57441558 | None:intergenic | 40.0% | |
| TTGGATACAGTTGTGGTTCT+AGG | - | chr6.2:57443020-57443039 | None:intergenic | 40.0% | |
| ! | CATTTGGGATGCTGAAAAAC+TGG | + | chr6.2:57442209-57442228 | MS.gene38659:intron | 40.0% |
| ! | TTTCTGTTTAGGGTCAGAGT+AGG | + | chr6.2:57442002-57442021 | MS.gene38659:intron | 40.0% |
| ! | TTTGGGATGCTGAAAAACTG+GGG | + | chr6.2:57442211-57442230 | MS.gene38659:intron | 40.0% |
| !! | GATTCCTCTTTGAGTTGTGT+CGG | + | chr6.2:57442024-57442043 | MS.gene38659:intron | 40.0% |
| !!! | GGCTTTTTGGGTTCTTCATT+AGG | - | chr6.2:57443406-57443425 | None:intergenic | 40.0% |
| AAAGTGGGCACAACTTGTGT+CGG | - | chr6.2:57442827-57442846 | None:intergenic | 45.0% | |
| CTTTACGCGTCTTGGACTTA+AGG | + | chr6.2:57441574-57441593 | MS.gene38659:CDS | 45.0% | |
| GACAGACAAATAGGGAGACT+TGG | - | chr6.2:57443165-57443184 | None:intergenic | 45.0% | |
| GTTGAAAGCTTTACGCGTCT+TGG | + | chr6.2:57441566-57441585 | MS.gene38659:CDS | 45.0% | |
| TAGGGAGACTTGGAACAAAG+AGG | - | chr6.2:57443155-57443174 | None:intergenic | 45.0% | |
| TCCCAAATGATAGGAACCCA+TGG | - | chr6.2:57442198-57442217 | None:intergenic | 45.0% | |
| TCTAAGTGTCCGACATGTGT+TGG | + | chr6.2:57442688-57442707 | MS.gene38659:intron | 45.0% | |
| !! | ACAAGAAAAGATGGTGCTGC+TGG | + | chr6.2:57443376-57443395 | MS.gene38659:CDS | 45.0% |
| AAGTGGGCACAACTTGTGTC+GGG | - | chr6.2:57442826-57442845 | None:intergenic | 50.0% | |
| AGCTCCGACACAACTCAAAG+AGG | - | chr6.2:57442031-57442050 | None:intergenic | 50.0% | |
| TTGTGTCGGAGCTTTGCTCT+GGG | + | chr6.2:57442038-57442057 | MS.gene38659:intron | 50.0% | |
| AACTTGTGTCGGGGACTCGA+GGG | - | chr6.2:57442816-57442835 | None:intergenic | 55.0% | |
| AGTGGGCACAACTTGTGTCG+GGG | - | chr6.2:57442825-57442844 | None:intergenic | 55.0% | |
| GAATCGTCTTGGTTGGGGTC+AGG | + | chr6.2:57441631-57441650 | MS.gene38659:CDS | 55.0% | |
| GTTGTGTCGGAGCTTTGCTC+TGG | + | chr6.2:57442037-57442056 | MS.gene38659:intron | 55.0% | |
| CAACTTGTGTCGGGGACTCG+AGG | - | chr6.2:57442817-57442836 | None:intergenic | 60.0% | |
| !! | CGGGGACTCGAGGGTATCTA+GGG | - | chr6.2:57442807-57442826 | None:intergenic | 60.0% |
| !! | GGGGACTCGAGGGTATCTAG+GGG | - | chr6.2:57442806-57442825 | None:intergenic | 60.0% |
| !! | TCGGGGACTCGAGGGTATCT+AGG | - | chr6.2:57442808-57442827 | None:intergenic | 60.0% |
| TGTTTCTCCGAGCGACGGCG+CGG | + | chr6.2:57441396-57441415 | MS.gene38659:CDS | 65.0% | |
| AGCGACGGCGCGGCCTTTGA+TGG | + | chr6.2:57441406-57441425 | MS.gene38659:CDS | 70.0% | |
| TCAAAGGCCGCGCCGTCGCT+CGG | - | chr6.2:57441406-57441425 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 57441395 | 57443429 | 57441395 | ID=MS.gene38659 |
| chr6.2 | mRNA | 57441395 | 57443429 | 57441395 | ID=MS.gene38659.t1;Parent=MS.gene38659 |
| chr6.2 | exon | 57441395 | 57441710 | 57441395 | ID=MS.gene38659.t1.exon1;Parent=MS.gene38659.t1 |
| chr6.2 | CDS | 57441395 | 57441710 | 57441395 | ID=cds.MS.gene38659.t1;Parent=MS.gene38659.t1 |
| chr6.2 | exon | 57443338 | 57443429 | 57443338 | ID=MS.gene38659.t1.exon2;Parent=MS.gene38659.t1 |
| chr6.2 | CDS | 57443338 | 57443429 | 57443338 | ID=cds.MS.gene38659.t1;Parent=MS.gene38659.t1 |
| Gene Sequence |
| Protein sequence |
