AlfalfaGEDB | MS.gene29775

M. sativa cultivar XinJiangDaYe / MS.gene29775

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0016787 GO:0016825 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29775.t1	XP_013459243.1	96.3	406	15	0	1	406	52	457	1.10E-227	798.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29775.t1	Q93Y09	64.5	406	141	1	1	403	53	458	3.9e-157	555.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29775.t1	A0A072UTV7	96.3	406	15	0	1	406	52	457	7.9e-228	798.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049149	MS.gene29775	0.807275	5.47E-50	-1.69E-46
MS.gene049170	MS.gene29775	0.823051	1.71E-53	-1.69E-46
MS.gene049993	MS.gene29775	0.836451	9.29E-57	-1.69E-46
MS.gene050133	MS.gene29775	-0.834554	2.80E-56	-1.69E-46
MS.gene050397	MS.gene29775	0.842821	2.05E-58	-1.69E-46
MS.gene050400	MS.gene29775	0.812452	4.21E-51	-1.69E-46
MS.gene050406	MS.gene29775	0.811157	8.06E-51	-1.69E-46
MS.gene050426	MS.gene29775	-0.908543	1.52E-81	-1.69E-46
MS.gene050464	MS.gene29775	0.835424	1.69E-56	-1.69E-46
MS.gene050529	MS.gene29775	0.849591	2.93E-60	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 72 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAACTTCAATCTCAA+GGG	0.591189	3.3:+35414230	MS.gene29775:CDS
AAACATTCACATATTTGAAT+AGG	0.352371	3.3:+35415201	MS.gene29775:CDS
AAAGACCGTGTACCAAGCAA+CGG	0.670704	3.3:-35416742	None:intergenic
AAATAGGCTAGTGTCAATGG+AGG	0.690398	3.3:+35414794	MS.gene29775:CDS
AACAATGAGTTCTTTATCAC+AGG	0.423884	3.3:+35414078	MS.gene29775:CDS
AACAATGAGTTGTGCAAGTT+GGG	0.394486	3.3:-35414201	None:intergenic
AACTTGGTTTAATGGAAGAC+AGG	0.500267	3.3:+35416816	MS.gene29775:CDS
AATGATTACAGTTGGAACAA+AGG	0.561761	3.3:+35413231	MS.gene29775:CDS
AATGGATTAGCCAAAGATTT+CGG	0.353684	3.3:+35416769	MS.gene29775:CDS
ACAATGAGTTCTTTATCACA+GGG	0.576910	3.3:+35414079	MS.gene29775:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGCAACTTCAATCTCAA+GGG	+	chr3.3:35414230-35414249	MS.gene29775:CDS	30.0%
AAATCCTTAAAGAATGTCTC+GGG	-	chr3.3:35417169-35417188	None:intergenic	30.0%
AACAATGAGTTCTTTATCAC+AGG	+	chr3.3:35414078-35414097	MS.gene29775:CDS	30.0%
AATGATTACAGTTGGAACAA+AGG	+	chr3.3:35413231-35413250	MS.gene29775:CDS	30.0%
ACAATGAGTTCTTTATCACA+GGG	+	chr3.3:35414079-35414098	MS.gene29775:CDS	30.0%
ACTTTGTTGATATTGCAGAT+AGG	+	chr3.3:35414603-35414622	MS.gene29775:intron	30.0%
AGTTTAATAGCTTCAATGGA+CGG	-	chr3.3:35414934-35414953	None:intergenic	30.0%
ATACTATTCATTTAGCACGA+AGG	-	chr3.3:35414126-35414145	None:intergenic	30.0%
ATCCAGAAATTACAAGACAA+AGG	-	chr3.3:35412997-35413016	None:intergenic	30.0%
ATCTAAGCTAAAAGGTAAAC+AGG	+	chr3.3:35415746-35415765	MS.gene29775:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	35412467	35417584	35412467	ID=MS.gene29775
chr3.3	mRNA	35412467	35417584	35412467	ID=MS.gene29775.t1;Parent=MS.gene29775
chr3.3	exon	35412467	35412559	35412467	ID=MS.gene29775.t1.exon1;Parent=MS.gene29775.t1
chr3.3	CDS	35412467	35412559	35412467	ID=cds.MS.gene29775.t1;Parent=MS.gene29775.t1
chr3.3	exon	35413151	35413252	35413151	ID=MS.gene29775.t1.exon2;Parent=MS.gene29775.t1
chr3.3	CDS	35413151	35413252	35413151	ID=cds.MS.gene29775.t1;Parent=MS.gene29775.t1
chr3.3	exon	35413356	35413451	35413356	ID=MS.gene29775.t1.exon3;Parent=MS.gene29775.t1
chr3.3	CDS	35413356	35413451	35413356	ID=cds.MS.gene29775.t1;Parent=MS.gene29775.t1
chr3.3	exon	35414022	35414114	35414022	ID=MS.gene29775.t1.exon4;Parent=MS.gene29775.t1
chr3.3	CDS	35414022	35414114	35414022	ID=cds.MS.gene29775.t1;Parent=MS.gene29775.t1
chr3.3	exon	35414189	35414259	35414189	ID=MS.gene29775.t1.exon5;Parent=MS.gene29775.t1
chr3.3	CDS	35414189	35414259	35414189	ID=cds.MS.gene29775.t1;Parent=MS.gene29775.t1
chr3.3	exon	35414621	35414815	35414621	ID=MS.gene29775.t1.exon6;Parent=MS.gene29775.t1
chr3.3	CDS	35414621	35414815	35414621	ID=cds.MS.gene29775.t1;Parent=MS.gene29775.t1
chr3.3	exon	35414989	35415075	35414989	ID=MS.gene29775.t1.exon7;Parent=MS.gene29775.t1
chr3.3	CDS	35414989	35415075	35414989	ID=cds.MS.gene29775.t1;Parent=MS.gene29775.t1
chr3.3	exon	35415164	35415288	35415164	ID=MS.gene29775.t1.exon8;Parent=MS.gene29775.t1
chr3.3	CDS	35415164	35415288	35415164	ID=cds.MS.gene29775.t1;Parent=MS.gene29775.t1
chr3.3	exon	35416537	35416629	35416537	ID=MS.gene29775.t1.exon9;Parent=MS.gene29775.t1
chr3.3	CDS	35416537	35416629	35416537	ID=cds.MS.gene29775.t1;Parent=MS.gene29775.t1
chr3.3	exon	35416720	35416837	35416720	ID=MS.gene29775.t1.exon10;Parent=MS.gene29775.t1
chr3.3	CDS	35416720	35416837	35416720	ID=cds.MS.gene29775.t1;Parent=MS.gene29775.t1
chr3.3	exon	35417435	35417584	35417435	ID=MS.gene29775.t1.exon11;Parent=MS.gene29775.t1
chr3.3	CDS	35417435	35417584	35417435	ID=cds.MS.gene29775.t1;Parent=MS.gene29775.t1

Gene Sequence

>MS.gene29775

TTGATGAAATGCAGAAAAGAGCTTTGTTTTACTACTTTGTTGAAGCAGAAGTTGAACCAGCTTCCAAGCCAGTAGTGCTTTGGTTAAATGGAGGTATGTAGCTAAATGAAGCATCCTCGCAGATACAAACACCGAATATGGACACTGATACATAGACGCAAGGAAATAGTTTAGAAAATTAAAGTGATTAAGTATAACCATTATCCGCATGTGTTGGTGTCGTGATTGAAACCGACATGTATCAGACACCAGATACACTTTTAATCTATATTATAAGTGCTACATTTGGAGGGATGGTTTTTCTTTGGGTGGGGTGGTTTTTAGGGGTTTTTTGGATGGGTAGCAAGCGATGAGTGTTTATGAACTTTGTTTTTTCAGTAGTTGTTTTACAACTGGGTTTTAAATTAGGCGGTGATGTTGGTGTTGGTGGTTGTTTGTTAATGGTGTTGAAGGTAGGTCTTGGTTACGTGGTGGCGTTTTGGTGTCTATTTGGGGTTTTCTTTTGGTTGTTCCACCTATATACGACGCCTTTGTCTTGTAATTTCTGGATGATCGGTCTCTGTTCGTCTTGTGCAGGGACCGAGTTTTTCAATAAAATTTGCCGTTAAAAAAAAAAAAGCAAATGGTTAAACTTTTATGTTATAGGAATTTGAATGAAGTATTAAGATGTTTTGTATTTTGAAGGGCCTGGTTGTTCTTCTGTTGGAGCTGGAGCTTTTGTGGAGCATGGTCCATTCAAACCAACTAAAAATGGTCTTATTAAAAATGATTACAGTTGGAACAAAGGTAATCCAACAACTACGCGATTTTGTTGTATTTTTAATTGAATTTTGATAACCCTTTCGTGCTTAATTACTCTAAATTGTTTTCTGTTTCCTACTTGTTGTAGTGGCAAACATGCTGTACTTGGAATCACCTGCTGGTGTTGGTTTCTCCTACTCTACTAATGAATCATTCTACGACTCCGTGAACGATGATTTGACAGGTTTTTTTTAACTTCTTTTTGTGCAAAATAGCATGTGAATGAATGGTATCACAAGATGGTTTACTAATTGTTAATAAGTTGAGTTGAATTATTAACTTATTTTTCATTTCATTTTTGGTGAATGCAAAATTGATTACAAAGGGGTAAGATAGATTTTGCATATTTAGATGTTTTCGAGTAGAAATTGATTACAAATGATTTTTAGGCTTCAATTTATTGTTCAACACAATTTGTCCAAATCAATCCATTCATAATTAATTTTTGTTACGGCAGAACCAAACATACACTAAGTTTATTTTGGGGTAAGCTATATTTTGTTATGTTCTAATTTGGTTGTTTAAATGTCAATATTAATTTTGTATACAAACCTAAGATTAAATAGAACTAATAATTTTTATTTTTTTTGTTTTAGGCTGAGAATTTTACATTATATTTAAACCAAACTAGATTTTAAAGGAAAATAAGAACATAACTTAGACTGCTTTATTTGCACAATTTTAATAAAATCAACTTAATCCATATTAAGATATCATCTTTATCAAGATTTGATACTAGCTCTATGTTATGCAGCAAGGGATAATCTTGTTTTTTTACAACATTGGTTCACTAAATTCTCAGAATACAAAAACAATGAGTTCTTTATCACAGGGGAGAGCTATGCAGGTAAAGAACCTTCGTGCTAAATGAATAGTATTTTCATTTTGGAGCTTGTGCTGATTAATTCATGCTTGTGTCAGGTCACTATGTACCCCAACTTGCACAACTCATTGTTCAAACCAAAAGCAACTTCAATCTCAAGGGAATTGCAGTGAGTGCACATATATGAGAAATTTTTTATTGAGTAAACAAGCATTTTGGCGCTTAAATGTGTGAAGCGCGGTCAATAGCCTATAAATAAATTAAAATTGCAAAAATATCCCTGCTTGTGTATTTTATTTGTCTTTGTAGTCCTCGAATGTGTACGTCTTTGATTAGTTATTATAATGTGTGTTCTATTAGTCAATTTGATCCACAAAATTACTAATTGACGACACTCTCGAGGATATTTCTGTAATTTCGATTCTTGTAAAGACTAAAACGACATTGCTTCACACATTCGATAATTATAGAATAAGAAACATTTTGGTCAGTATGAATAACACCGACTTATTACTTTGTTGATATTGCAGATAGGGAATCCTCTTCTGGAATTCAACACAGATTTCAACTCTAGAGCTGAGTATCTCTGGTCTCATGGACTGATATCAGATTCAACCTATGATTCCTTCACAAAAATATGCAACTTTTCACAAATTAGAAGACAATATGCAAGTGGCGCACTTACTACCGTTTGCGCAAGAGTAAATAGGCTAGTGTCAATGGAGGTTAGTAGATATATATTTTTTTTTTTAAAAAAAAAGAAGTTGGGAAGGAAAAATAATTAATAATTAAAATCACACTAATAAATATTATATAGTTCGTTTTGAGGGGATTTAAACTCCGTCCATTGAAGCTATTAAACTAAACTCTTACCTCTGAGGTGACACCTTATGGACAGATTAGTAGATATATTGATTCGTATGATGTTACTCTTGATGTGTGTCTATCAACAGTAGAACAACAAGCATATGTGCTAACTCAACTGGTAAACACACTTCTCCATTCCTTTTCAATCTAGATTCTCTTTCTATTTTATGTTTATTTTCATATGCTTACCTTCATGCCTGGTTTAGCAAGAGGGAGAGAAGATAGATGTTTGTGTGGAAGATGAAACATTCACATATTTGAATAGGAAAGAAGTGCAAGAAGCTCTTCATGCTAAGCTTGTAGGGATCACCACATGGACCACTTGTAGTGGGTAAGTTTTAGAACTTATTATGATTCTTAAAATCACTTGGGATTATTTTATGGAAATGAATGGGATAAAGTTGAATTGCATTGATGAGTTAGTCACTAAAATTACAAAATGTTCCTTAAAATTGAAAATTTTAAATCATACTAATTTTTTAAGGAAAGTTAAATTAGCCCCTGAAATTGTCTCAGGTAACTAACATGGTCAATGATTTTTAATTTTGTTAATTTCATTGGCCAAATTATTCTTTGATTTCAAGGACTAAATTAATGATTTTTTTTTCTTCCGATAAACCAAAAGATAGGTTAGGCATAAAGAAGAATCAGAAATTCCTATCCTCTATCACGTGCTCAATATATATTATTAAGAAAGAGAATATATGTGTGTATACATACACACACAAGAGGAAAGACTAGGCCAAAACCCCCCAAAAAGACAAAGAAACAGCAAAAAAAGAATAACAATCTAAGCTAAAAGGTAAACAGGCAAACCATTTGTATCCCGATAGAAATCTAGAAACAAAAAATGCGGAAAAGAACTGAACCAAGAAACTCCAAGGATGCTACAACCATGTGTGGCTAATTTATCCGCACAACAATCTCCATCGCGGAAAAAATAGATTGGTTGCAAACAAATTCACTTTATGAATAAATTATTGAGGGAAACTTGGGAGTTTGAATTACCTATACCGCTGATATTCTAGTAATTAATCTTCATTAGGGAGAGTAGGGAGGAGGACCCTTAGAGCGGGTTTGATAAGCTGCCTTTCAAATTTTCTTTTTCTGATTATTAGATAAATACGGTGTAAATGACACGTCTACATTCGCACCTTGAATCAACAAGTGTTGGAAAAGATATAATTCCTTCTGTAAGTTCGGATCAACATCTCCAGGATTATCAAGCGTCTGCAACCAAAGTCAGAATCGATTGATGAATCAAAGAATTTCTCACAATTTCATCAGTAACATTATTTGGGTTAATGATTTCCTTCAAAATTAAATAGAATAGTAATATATTCCTTTATTTACATTGTTAAATTTATTCGGAAGCAAGCAAATATGGTAGTTTATCTTCTTTTTTTTTTTTTTGAAGAGACAATATGGTAGTTTATCTTTATATTGCTCCTCTATGTCTTCCCTCTTTGTTGATTAATTTTTTTTTTCAAGGACTCTCGTTAATAATTGAAATGAGTTAAGTTTGGTTGTGTAAAAAAATAAAAATACTAATAGTAATACCATTTCCTTTATGTGACAGAGTTCTCAAATATGACATGCAAAATTTAGAGATTCCAACCATATCTATTCTGGGAAAACTTGTTAAGTCAGGTGTAAGAGTTCTTGTATTCAGGTTAGTGAGTGTTACTTCTTGACATTACAATCTCACCTTTGGTTACTTTGTCATATACTTTTGAGCAAGCTAAGATGTTTTTCTCTGCAGTGGAGATCAAGATTCAGTATTACCGTTGCTTGGTACACGGTCTTTAGTAAATGGATTAGCCAAAGATTTCGGTTTGAACACAACAGAGTCCTATAGAACTTGGTTTAATGGAAGACAGGTATGTATTTTGAATGTGTAAAATCTTATGTTTAACTAATATGTATCAATGTCGGAATCTCATGTTTTTTGACATTAACGATGTTGACGTGTCAGTGTCTATGCCATTATCTTCGGTATGTTAAACAGACAGTTTAAGTTTCACTTACTATACTCATCGGCTTTTTTTTAGTAAAATGATAAAAGTAACAAATTTTATGTGATTATGTTGATAAAAAAAATTAAGTTATTGGATTGAGTATGAAAAAAAAAAGTTTAAATGAATGGTAAAATTGAAATAAAAAAAAATGCATAGCCTTTCATCTAGAAAAGAACTTGATATGTGTAGACCCGAGACATTCTTTAAGGATTTTAAAAAAAGAAATTATTTTATAAAAAAATCAAAATTTTGATTTCCAATACATTAATTACACATATTTTCATAGAATGTTACTATTTAAAGGTATTAATGAGTGTTTCGGAGAAACTCATTAACATTTTCCATATTTAAATATTCAGTTTTTTATTGGATAAGAGATGATAAGATTGTAAATAAAATAGTTTAACTAAAACTTAATATTCCTTTAAAACCAACTTATTTTGATATTTGATTTTTCAGGTAGCTGGATGGACACAAGTATATGGTGACATGTTATCCTTTGCAACCATAAGAGGAGCAGCTCATGAGGCTCCATTTTCACAACCAGGGAGATCATTGGTGCTGCTAAAGGCATTTTTGGAAGGAAAATCACTTCCAACTATTCTTTGA

Protein sequence

>MS.gene29775.t1

LMKCRKELCFTTLLKQKLNQLPSQUCFGUMEGLVVLLLELELLWSMVHSNQLKMVLLKMITVGTKWQTCCTWNHLLVLVSPTLLMNHSTTPUTMIUQQGIILFFYNIGSLNSQNTKTMSSLSQGRAMQVTMYPNLHNSLFKPKATSISRELQUGILFWNSTQISTLELSISGLMDUYQIQPMIPSQKYATFHKLEDNMQVAHLLPFAQEUIGUCQWRLVDILIRMMLLLMCVYQQUNNKHMCULNCKRERRUMFVWKMKHSHIUIGKKCKKLFMLSLUGSPHGPLVVEFSNMTCKIURFQPYLFWENLLSQVUEFLYSVEIKIQYYRCLVHGLUUMDUPKISVUTQQSPIELGLMEDRULDGHKYMVTCYPLQPUEEQLMRLHFHNQGDHWCCURHFWKENHFQLFF