Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49436.t1 | AFK34304.1 | 98.3 | 175 | 3 | 0 | 1 | 175 | 106 | 280 | 2.00E-93 | 351.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49436.t1 | G7I387 | 98.3 | 175 | 3 | 0 | 1 | 175 | 106 | 280 | 1.4e-93 | 351.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene49436.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene49436 | 0.820679 | 6.04E-53 | -1.69E-46 |
| MS.gene049170 | MS.gene49436 | 0.832708 | 8.10E-56 | -1.69E-46 |
| MS.gene049257 | MS.gene49436 | 0.831716 | 1.43E-55 | -1.69E-46 |
| MS.gene049609 | MS.gene49436 | 0.801191 | 1.01E-48 | -1.69E-46 |
| MS.gene050060 | MS.gene49436 | 0.814403 | 1.57E-51 | -1.69E-46 |
| MS.gene050133 | MS.gene49436 | -0.836845 | 7.37E-57 | -1.69E-46 |
| MS.gene050315 | MS.gene49436 | 0.867458 | 1.35E-65 | -1.69E-46 |
| MS.gene050400 | MS.gene49436 | 0.825744 | 3.97E-54 | -1.69E-46 |
| MS.gene050426 | MS.gene49436 | -0.871867 | 4.93E-67 | -1.69E-46 |
| MS.gene050553 | MS.gene49436 | 0.825841 | 3.76E-54 | -1.69E-46 |
| MS.gene050593 | MS.gene49436 | 0.800294 | 1.54E-48 | -1.69E-46 |
| MS.gene050625 | MS.gene49436 | 0.815864 | 7.43E-52 | -1.69E-46 |
| MS.gene050670 | MS.gene49436 | 0.870954 | 9.87E-67 | -1.69E-46 |
| MS.gene050811 | MS.gene49436 | -0.808207 | 3.47E-50 | -1.69E-46 |
| MS.gene05081 | MS.gene49436 | 0.888442 | 5.88E-73 | -1.69E-46 |
| MS.gene05105 | MS.gene49436 | 0.821592 | 3.72E-53 | -1.69E-46 |
| MS.gene051387 | MS.gene49436 | 0.800621 | 1.32E-48 | -1.69E-46 |
| MS.gene051525 | MS.gene49436 | 0.894724 | 1.88E-75 | -1.69E-46 |
| MS.gene051552 | MS.gene49436 | -0.864804 | 9.34E-65 | -1.69E-46 |
| MS.gene051582 | MS.gene49436 | 0.821555 | 3.79E-53 | -1.69E-46 |
| MS.gene051588 | MS.gene49436 | 0.80587 | 1.08E-49 | -1.69E-46 |
| MS.gene051838 | MS.gene49436 | 0.88345 | 4.44E-71 | -1.69E-46 |
| MS.gene051941 | MS.gene49436 | 0.805794 | 1.12E-49 | -1.69E-46 |
| MS.gene052011 | MS.gene49436 | -0.882277 | 1.19E-70 | -1.69E-46 |
| MS.gene052128 | MS.gene49436 | -0.822399 | 2.42E-53 | -1.69E-46 |
| MS.gene052134 | MS.gene49436 | 0.845514 | 3.87E-59 | -1.69E-46 |
| MS.gene052135 | MS.gene49436 | 0.834225 | 3.39E-56 | -1.69E-46 |
| MS.gene052136 | MS.gene49436 | 0.811088 | 8.34E-51 | -1.69E-46 |
| MS.gene052253 | MS.gene49436 | 0.823657 | 1.23E-53 | -1.69E-46 |
| MS.gene052346 | MS.gene49436 | 0.848902 | 4.56E-60 | -1.69E-46 |
| MS.gene052414 | MS.gene49436 | 0.865584 | 5.31E-65 | -1.69E-46 |
| MS.gene052469 | MS.gene49436 | 0.874401 | 6.95E-68 | -1.69E-46 |
| MS.gene052481 | MS.gene49436 | 0.831148 | 1.97E-55 | -1.69E-46 |
| MS.gene052485 | MS.gene49436 | 0.803964 | 2.71E-49 | -1.69E-46 |
| MS.gene052501 | MS.gene49436 | 0.844253 | 8.48E-59 | -1.69E-46 |
| MS.gene052505 | MS.gene49436 | 0.837354 | 5.46E-57 | -1.69E-46 |
| MS.gene052589 | MS.gene49436 | 0.823525 | 1.32E-53 | -1.69E-46 |
| MS.gene052982 | MS.gene49436 | 0.858293 | 9.10E-63 | -1.69E-46 |
| MS.gene052999 | MS.gene49436 | 0.815597 | 8.52E-52 | -1.69E-46 |
| MS.gene053169 | MS.gene49436 | 0.837232 | 5.87E-57 | -1.69E-46 |
| MS.gene053318 | MS.gene49436 | 0.800055 | 1.72E-48 | -1.69E-46 |
| MS.gene053330 | MS.gene49436 | 0.852144 | 5.60E-61 | -1.69E-46 |
| MS.gene053824 | MS.gene49436 | 0.824646 | 7.21E-54 | -1.69E-46 |
| MS.gene053997 | MS.gene49436 | 0.80843 | 3.11E-50 | -1.69E-46 |
| MS.gene054102 | MS.gene49436 | 0.813052 | 3.11E-51 | -1.69E-46 |
| MS.gene054107 | MS.gene49436 | 0.846637 | 1.92E-59 | -1.69E-46 |
| MS.gene054110 | MS.gene49436 | 0.809637 | 1.71E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene49436 | 0.821382 | 4.16E-53 | -1.69E-46 |
| MS.gene054344 | MS.gene49436 | 0.818154 | 2.27E-52 | -1.69E-46 |
| MS.gene054556 | MS.gene49436 | 0.844626 | 6.73E-59 | -1.69E-46 |
| MS.gene054719 | MS.gene49436 | 0.859359 | 4.37E-63 | -1.69E-46 |
| MS.gene054809 | MS.gene49436 | -0.80433 | 2.28E-49 | -1.69E-46 |
| MS.gene054884 | MS.gene49436 | -0.841118 | 5.77E-58 | -1.69E-46 |
| MS.gene054920 | MS.gene49436 | 0.80827 | 3.36E-50 | -1.69E-46 |
| MS.gene054927 | MS.gene49436 | 0.813573 | 2.39E-51 | -1.69E-46 |
| MS.gene05494 | MS.gene49436 | 0.828105 | 1.08E-54 | -1.69E-46 |
| MS.gene055159 | MS.gene49436 | -0.823798 | 1.14E-53 | -1.69E-46 |
| MS.gene055206 | MS.gene49436 | 0.818208 | 2.21E-52 | -1.69E-46 |
| MS.gene055289 | MS.gene49436 | 0.8107 | 1.01E-50 | -1.69E-46 |
| MS.gene055369 | MS.gene49436 | 0.843364 | 1.47E-58 | -1.69E-46 |
| MS.gene055370 | MS.gene49436 | 0.846272 | 2.41E-59 | -1.69E-46 |
| MS.gene055539 | MS.gene49436 | 0.88861 | 5.07E-73 | -1.69E-46 |
| MS.gene05553 | MS.gene49436 | 0.857756 | 1.31E-62 | -1.69E-46 |
| MS.gene05556 | MS.gene49436 | 0.863906 | 1.78E-64 | -1.69E-46 |
| MS.gene055741 | MS.gene49436 | 0.872324 | 3.47E-67 | -1.69E-46 |
| MS.gene055744 | MS.gene49436 | 0.878112 | 3.65E-69 | -1.69E-46 |
| MS.gene055892 | MS.gene49436 | 0.817971 | 2.50E-52 | -1.69E-46 |
| MS.gene055893 | MS.gene49436 | 0.813952 | 1.97E-51 | -1.69E-46 |
| MS.gene05594 | MS.gene49436 | 0.811501 | 6.78E-51 | -1.69E-46 |
| MS.gene056166 | MS.gene49436 | 0.800508 | 1.39E-48 | -1.69E-46 |
| MS.gene056351 | MS.gene49436 | 0.817215 | 3.70E-52 | -1.69E-46 |
| MS.gene056514 | MS.gene49436 | 0.846535 | 2.04E-59 | -1.69E-46 |
| MS.gene056633 | MS.gene49436 | 0.827958 | 1.17E-54 | -1.69E-46 |
| MS.gene056659 | MS.gene49436 | 0.809134 | 2.20E-50 | -1.69E-46 |
| MS.gene056723 | MS.gene49436 | 0.810456 | 1.14E-50 | -1.69E-46 |
| MS.gene056782 | MS.gene49436 | 0.80497 | 1.67E-49 | -1.69E-46 |
| MS.gene056877 | MS.gene49436 | 0.861504 | 9.79E-64 | -1.69E-46 |
| MS.gene057019 | MS.gene49436 | 0.833584 | 4.91E-56 | -1.69E-46 |
| MS.gene057048 | MS.gene49436 | 0.812689 | 3.74E-51 | -1.69E-46 |
| MS.gene057124 | MS.gene49436 | 0.868922 | 4.55E-66 | -1.69E-46 |
| MS.gene057196 | MS.gene49436 | 0.823857 | 1.10E-53 | -1.69E-46 |
| MS.gene057289 | MS.gene49436 | 0.828565 | 8.38E-55 | -1.69E-46 |
| MS.gene057332 | MS.gene49436 | 0.835614 | 1.51E-56 | -1.69E-46 |
| MS.gene057396 | MS.gene49436 | 0.8005 | 1.40E-48 | -1.69E-46 |
| MS.gene057658 | MS.gene49436 | 0.817837 | 2.68E-52 | -1.69E-46 |
| MS.gene057749 | MS.gene49436 | 0.831886 | 1.29E-55 | -1.69E-46 |
| MS.gene057823 | MS.gene49436 | 0.837809 | 4.18E-57 | -1.69E-46 |
| MS.gene057856 | MS.gene49436 | 0.80206 | 6.71E-49 | -1.69E-46 |
| MS.gene058007 | MS.gene49436 | 0.817979 | 2.49E-52 | -1.69E-46 |
| MS.gene058120 | MS.gene49436 | 0.804682 | 1.92E-49 | -1.69E-46 |
| MS.gene058376 | MS.gene49436 | 0.849869 | 2.45E-60 | -1.69E-46 |
| MS.gene05837 | MS.gene49436 | 0.803686 | 3.10E-49 | -1.69E-46 |
| MS.gene058418 | MS.gene49436 | -0.847901 | 8.62E-60 | -1.69E-46 |
| MS.gene058444 | MS.gene49436 | 0.883471 | 4.36E-71 | -1.69E-46 |
| MS.gene058700 | MS.gene49436 | 0.861885 | 7.49E-64 | -1.69E-46 |
| MS.gene058746 | MS.gene49436 | 0.81225 | 4.66E-51 | -1.69E-46 |
| MS.gene058838 | MS.gene49436 | 0.825534 | 4.45E-54 | -1.69E-46 |
| MS.gene058948 | MS.gene49436 | 0.815493 | 8.99E-52 | -1.69E-46 |
| MS.gene059011 | MS.gene49436 | 0.818728 | 1.68E-52 | -1.69E-46 |
| MS.gene059023 | MS.gene49436 | 0.822995 | 1.76E-53 | -1.69E-46 |
| MS.gene059141 | MS.gene49436 | 0.813456 | 2.54E-51 | -1.69E-46 |
| MS.gene059303 | MS.gene49436 | 0.833822 | 4.28E-56 | -1.69E-46 |
| MS.gene059420 | MS.gene49436 | 0.869937 | 2.13E-66 | -1.69E-46 |
| MS.gene059512 | MS.gene49436 | 0.8756 | 2.71E-68 | -1.69E-46 |
| MS.gene059683 | MS.gene49436 | 0.814364 | 1.60E-51 | -1.69E-46 |
| MS.gene059717 | MS.gene49436 | 0.823926 | 1.06E-53 | -1.69E-46 |
| MS.gene059946 | MS.gene49436 | 0.821764 | 3.39E-53 | -1.69E-46 |
| MS.gene060087 | MS.gene49436 | -0.804907 | 1.72E-49 | -1.69E-46 |
| MS.gene060372 | MS.gene49436 | 0.821462 | 3.99E-53 | -1.69E-46 |
| MS.gene060403 | MS.gene49436 | 0.827815 | 1.27E-54 | -1.69E-46 |
| MS.gene060485 | MS.gene49436 | 0.822443 | 2.36E-53 | -1.69E-46 |
| MS.gene060717 | MS.gene49436 | 0.814049 | 1.88E-51 | -1.69E-46 |
| MS.gene060835 | MS.gene49436 | 0.804119 | 2.52E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene49436 | 0.800784 | 1.23E-48 | -1.69E-46 |
| MS.gene06092 | MS.gene49436 | 0.826563 | 2.53E-54 | -1.69E-46 |
| MS.gene061154 | MS.gene49436 | 0.881596 | 2.10E-70 | -1.69E-46 |
| MS.gene061231 | MS.gene49436 | 0.830706 | 2.52E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49436.t1 | MTR_1g095000 | 98.286 | 175 | 3 | 0 | 1 | 175 | 106 | 280 | 5.86e-127 | 358 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49436.t1 | AT2G39000 | 74.419 | 172 | 44 | 0 | 1 | 172 | 55 | 226 | 5.02e-97 | 280 |
| MS.gene49436.t1 | AT2G39000 | 74.419 | 172 | 44 | 0 | 1 | 172 | 111 | 282 | 9.40e-97 | 282 |
| MS.gene49436.t1 | AT2G39000 | 77.500 | 80 | 18 | 0 | 1 | 80 | 111 | 190 | 4.80e-41 | 137 |
| MS.gene49436.t1 | AT2G39000 | 77.215 | 79 | 18 | 0 | 1 | 79 | 111 | 189 | 2.88e-40 | 136 |
Find 43 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGATCAAACTTTCTTATT+TGG | 0.151315 | 1.1:-68465525 | MS.gene49436:CDS |
| ACCTGTCTGGTTGCTGTTAT+TGG | 0.195810 | 1.1:-68465555 | MS.gene49436:CDS |
| TTTCAAATCTATAAAGGTTC+CGG | 0.297267 | 1.1:-68464135 | MS.gene49436:CDS |
| TGTCGCAGAGGCCCCTTTCT+AGG | 0.313734 | 1.1:+68465402 | None:intergenic |
| GCAAGGTTTCAAATCTATAA+AGG | 0.323365 | 1.1:-68464141 | MS.gene49436:CDS |
| GGCACGACATCCCCAACTTC+TGG | 0.376576 | 1.1:+68464217 | None:intergenic |
| AGTGAAGACTTCAAGATTGC+GGG | 0.393136 | 1.1:-68465501 | MS.gene49436:CDS |
| TTCAAATCTATAAAGGTTCC+GGG | 0.414198 | 1.1:-68464134 | MS.gene49436:CDS |
| TGTGTTGAGGATGGATAGAT+TGG | 0.415569 | 1.1:-68465622 | None:intergenic |
| AGAATCACAAGCCAGAAGTT+GGG | 0.428773 | 1.1:-68464228 | MS.gene49436:CDS |
| AGGTTCCGGGAGGAGCTAAC+TGG | 0.431391 | 1.1:-68464121 | MS.gene49436:CDS |
| AGCTAAACAATTGGTGGCTA+AGG | 0.435007 | 1.1:-68464252 | MS.gene49436:CDS |
| TGCAGACTTTCTACCTAGAA+AGG | 0.446932 | 1.1:-68465415 | MS.gene49436:CDS |
| ATGAAGTTGAACTTCACATC+TGG | 0.450823 | 1.1:+68464080 | None:intergenic |
| CAGAATCACAAGCCAGAAGT+TGG | 0.456663 | 1.1:-68464229 | MS.gene49436:CDS |
| GCAGGATTCTCTTTACCAAA+TGG | 0.460775 | 1.1:-68465588 | MS.gene49436:CDS |
| GAAAGGAATAGCTAAACAAT+TGG | 0.467703 | 1.1:-68464261 | MS.gene49436:CDS |
| GCAGACTTTCTACCTAGAAA+GGG | 0.481732 | 1.1:-68465414 | MS.gene49436:CDS |
| TAGATTTGAAACCTTGCCCT+TGG | 0.481800 | 1.1:+68464147 | None:intergenic |
| TGGTATAACTTTGTTGCCGC+AGG | 0.491255 | 1.1:+68464167 | None:intergenic |
| AGATTGGTGGCTATGTTAGC+AGG | 0.496959 | 1.1:-68465606 | MS.gene49436:CDS |
| CTCAACAAGGGATATGTGGC+TGG | 0.532427 | 1.1:-68465459 | MS.gene49436:CDS |
| GCCAATAACAGCAACCAGAC+AGG | 0.535502 | 1.1:+68465554 | None:intergenic |
| GAATCACAAGCCAGAAGTTG+GGG | 0.540089 | 1.1:-68464227 | MS.gene49436:CDS |
| AAGCCTCAACAAGGGATATG+TGG | 0.555870 | 1.1:-68465463 | MS.gene49436:CDS |
| AGGAATAGCTAAACAATTGG+TGG | 0.557067 | 1.1:-68464258 | MS.gene49436:CDS |
| TGGTTGCAAAAGAACCTGTC+TGG | 0.566369 | 1.1:-68465568 | MS.gene49436:CDS |
| AAGTGAAGACTTCAAGATTG+CGG | 0.578803 | 1.1:-68465502 | MS.gene49436:CDS |
| GTTGAGGATGGATAGATTGG+TGG | 0.579094 | 1.1:-68465619 | None:intergenic |
| AGGGGCCTCTGCGACAGAGA+AGG | 0.581862 | 1.1:-68465395 | MS.gene49436:intron |
| TGAGGCCAGTTAGCTCCTCC+CGG | 0.584487 | 1.1:+68464116 | None:intergenic |
| CAGCCACATATCCCTTGTTG+AGG | 0.606889 | 1.1:+68465460 | None:intergenic |
| ACAAAGTTATACCAAGGGCA+AGG | 0.614543 | 1.1:-68464158 | MS.gene49436:CDS |
| TGGGAAATTAAGCCTCAACA+AGG | 0.631474 | 1.1:-68465472 | MS.gene49436:CDS |
| TAAATCGCAGTGTAATGCAA+TGG | 0.632285 | 1.1:+68464196 | None:intergenic |
| CAGACTTTCTACCTAGAAAG+GGG | 0.636163 | 1.1:-68465413 | MS.gene49436:CDS |
| AATTGCATACATATCAAATG+TGG | 0.643430 | 1.1:-68464306 | MS.gene49436:CDS |
| CGGCAACAAAGTTATACCAA+GGG | 0.644825 | 1.1:-68464163 | MS.gene49436:CDS |
| GCGGCAACAAAGTTATACCA+AGG | 0.651915 | 1.1:-68464164 | MS.gene49436:CDS |
| ACTCACCTTCTCTGTCGCAG+AGG | 0.668717 | 1.1:+68465390 | None:intergenic |
| GGGAAATTAAGCCTCAACAA+GGG | 0.686786 | 1.1:-68465471 | MS.gene49436:CDS |
| CTGCGATTTACGAAATCCTG+CGG | 0.698179 | 1.1:-68464183 | MS.gene49436:CDS |
| AAATCTATAAAGGTTCCGGG+AGG | 0.724022 | 1.1:-68464131 | MS.gene49436:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATGTATAAAAACTATTGT+AGG | - | chr1.1:68465324-68465343 | MS.gene49436:intron | 15.0% |
| !!! | ATAAAAAGTAGTTTGTATTT+TGG | + | chr1.1:68464530-68464549 | None:intergenic | 15.0% |
| !!! | CAATTAATTTTAACATGTTT+TGG | + | chr1.1:68464576-68464595 | None:intergenic | 15.0% |
| !!! | TTGTATCTTTTTCTTATAAT+TGG | + | chr1.1:68464771-68464790 | None:intergenic | 15.0% |
| !! | ATCAAAATTATAGCATTAAG+TGG | - | chr1.1:68464922-68464941 | MS.gene49436:intron | 20.0% |
| !! | ATGCATTAAAAGACAAAATA+AGG | + | chr1.1:68464830-68464849 | None:intergenic | 20.0% |
| !! | TGCATTAAAAGACAAAATAA+GGG | + | chr1.1:68464829-68464848 | None:intergenic | 20.0% |
| !!! | ATCTTTTTCTTATAATTGGT+AGG | + | chr1.1:68464767-68464786 | None:intergenic | 20.0% |
| !!! | ATTTAATTTAGAGTCATGTT+TGG | - | chr1.1:68464891-68464910 | MS.gene49436:intron | 20.0% |
| !!! | TATGTTTCTAACTATGTATA+AGG | - | chr1.1:68465227-68465246 | MS.gene49436:intron | 20.0% |
| !!! | TTTAATTTAGAGTCATGTTT+GGG | - | chr1.1:68464892-68464911 | MS.gene49436:intron | 20.0% |
| ! | AATTGCATACATATCAAATG+TGG | - | chr1.1:68465352-68465371 | MS.gene49436:intron | 25.0% |
| ! | AGAGAAAAATTTAGACAGAA+AGG | - | chr1.1:68465380-68465399 | MS.gene49436:intron | 25.0% |
| ! | AGATAACTTGAAAATTACAC+AGG | + | chr1.1:68464492-68464511 | None:intergenic | 25.0% |
| ! | ATCTATTCCATATAAACAGT+AGG | - | chr1.1:68464848-68464867 | MS.gene49436:intron | 25.0% |
| ! | CTTGATCAAACTTTCTTATT+TGG | - | chr1.1:68464133-68464152 | MS.gene49436:CDS | 25.0% |
| ! | TATAAAAACTATTGTAGGAC+TGG | - | chr1.1:68465329-68465348 | MS.gene49436:intron | 25.0% |
| ! | TTTCAAATCTATAAAGGTTC+CGG | - | chr1.1:68465523-68465542 | MS.gene49436:CDS | 25.0% |
| !! | AACATAGTTTACCATTTTGA+AGG | + | chr1.1:68465213-68465232 | None:intergenic | 25.0% |
| !! | ACATAGTTTACCATTTTGAA+GGG | + | chr1.1:68465212-68465231 | None:intergenic | 25.0% |
| !!! | ACAAACTACTTTTTATCTAG+AGG | - | chr1.1:68464534-68464553 | MS.gene49436:intron | 25.0% |
| !!! | ATTGTTTTTTTCTTTGACCA+GGG | - | chr1.1:68464961-68464980 | MS.gene49436:intron | 25.0% |
| !!! | TAAAACTTGTTTCTGAATCT+GGG | - | chr1.1:68464291-68464310 | MS.gene49436:CDS | 25.0% |
| !!! | TTAAAACTTGTTTCTGAATC+TGG | - | chr1.1:68464290-68464309 | MS.gene49436:CDS | 25.0% |
| ACTAGTAACATGAGTAAACT+AGG | + | chr1.1:68465278-68465297 | None:intergenic | 30.0% | |
| GAAAATTACACAGGAATGAA+AGG | + | chr1.1:68464483-68464502 | None:intergenic | 30.0% | |
| GAAAGGAATAGCTAAACAAT+TGG | - | chr1.1:68465397-68465416 | MS.gene49436:CDS | 30.0% | |
| GCAAGGTTTCAAATCTATAA+AGG | - | chr1.1:68465517-68465536 | MS.gene49436:CDS | 30.0% | |
| TCTAAATTAAATGCTCTTCG+AGG | + | chr1.1:68464883-68464902 | None:intergenic | 30.0% | |
| TTCAAATCTATAAAGGTTCC+GGG | - | chr1.1:68465524-68465543 | MS.gene49436:CDS | 30.0% | |
| !! | TTCTGTTTTAAACAAGTGCA+AGG | + | chr1.1:68465090-68465109 | None:intergenic | 30.0% |
| !!! | GATTGTTTTTTTCTTTGACC+AGG | - | chr1.1:68464960-68464979 | MS.gene49436:intron | 30.0% |
| AAGTGAAGACTTCAAGATTG+CGG | - | chr1.1:68464156-68464175 | MS.gene49436:CDS | 35.0% | |
| AATTAAATGCTCTTCGAGGA+TGG | + | chr1.1:68464879-68464898 | None:intergenic | 35.0% | |
| AGGAATAGCTAAACAATTGG+TGG | - | chr1.1:68465400-68465419 | MS.gene49436:CDS | 35.0% | |
| AGTTATGTGATAAATGTCCC+TGG | + | chr1.1:68464981-68465000 | None:intergenic | 35.0% | |
| ATGAAGTTGAACTTCACATC+TGG | + | chr1.1:68465581-68465600 | None:intergenic | 35.0% | |
| GAAAATTGTTGAGACATGTC+TGG | + | chr1.1:68464628-68464647 | None:intergenic | 35.0% | |
| GGTAACACCTACTGTTTATA+TGG | + | chr1.1:68464858-68464877 | None:intergenic | 35.0% | |
| TAAATCGCAGTGTAATGCAA+TGG | + | chr1.1:68465465-68465484 | None:intergenic | 35.0% | |
| TCTCTTCATATTGATCACTG+AGG | - | chr1.1:68465117-68465136 | MS.gene49436:intron | 35.0% | |
| ! | CATTTTCTTATACACGAGAC+TGG | + | chr1.1:68464730-68464749 | None:intergenic | 35.0% |
| ! | TTCACATCTGGAGAAGTTTT+TGG | + | chr1.1:68465569-68465588 | None:intergenic | 35.0% |
| !! | AGACAAGCTAGAAGCATTTA+AGG | + | chr1.1:68464682-68464701 | None:intergenic | 35.0% |
| AAATCTATAAAGGTTCCGGG+AGG | - | chr1.1:68465527-68465546 | MS.gene49436:CDS | 40.0% | |
| ACAAAGTTATACCAAGGGCA+AGG | - | chr1.1:68465500-68465519 | MS.gene49436:CDS | 40.0% | |
| AGAATCACAAGCCAGAAGTT+GGG | - | chr1.1:68465430-68465449 | MS.gene49436:CDS | 40.0% | |
| AGTGAAGACTTCAAGATTGC+GGG | - | chr1.1:68464157-68464176 | MS.gene49436:CDS | 40.0% | |
| ATTGATCACTGAGGCAAGAA+TGG | - | chr1.1:68465126-68465145 | MS.gene49436:intron | 40.0% | |
| CAGACTTTCTACCTAGAAAG+GGG | - | chr1.1:68464245-68464264 | MS.gene49436:CDS | 40.0% | |
| CGGCAACAAAGTTATACCAA+GGG | - | chr1.1:68465495-68465514 | MS.gene49436:CDS | 40.0% | |
| GCAGACTTTCTACCTAGAAA+GGG | - | chr1.1:68464244-68464263 | MS.gene49436:CDS | 40.0% | |
| GCAGGATTCTCTTTACCAAA+TGG | - | chr1.1:68464070-68464089 | MS.gene49436:CDS | 40.0% | |
| GGGAAATTAAGCCTCAACAA+GGG | - | chr1.1:68464187-68464206 | MS.gene49436:CDS | 40.0% | |
| TCCTGCATTACCCTTCAAAA+TGG | - | chr1.1:68465199-68465218 | MS.gene49436:intron | 40.0% | |
| TGACATGCGATGAAAGAACA+TGG | + | chr1.1:68465042-68465061 | None:intergenic | 40.0% | |
| TGCAGACTTTCTACCTAGAA+AGG | - | chr1.1:68464243-68464262 | MS.gene49436:CDS | 40.0% | |
| TGGGAAATTAAGCCTCAACA+AGG | - | chr1.1:68464186-68464205 | MS.gene49436:CDS | 40.0% | |
| TTCTTATACACGAGACTGGA+GGG | + | chr1.1:68464726-68464745 | None:intergenic | 40.0% | |
| TTTCTTATACACGAGACTGG+AGG | + | chr1.1:68464727-68464746 | None:intergenic | 40.0% | |
| ! | AGCTAAACAATTGGTGGCTA+AGG | - | chr1.1:68465406-68465425 | MS.gene49436:CDS | 40.0% |
| ! | CAGGTTCTTTTGCAACCATT+TGG | + | chr1.1:68464088-68464107 | None:intergenic | 40.0% |
| ! | TAGATTTGAAACCTTGCCCT+TGG | + | chr1.1:68465514-68465533 | None:intergenic | 40.0% |
| !! | ACCATTTTGAAGGGTAATGC+AGG | + | chr1.1:68465203-68465222 | None:intergenic | 40.0% |
| !! | CTGAATTCGCTTTTGTCTTC+CGG | - | chr1.1:68464599-68464618 | MS.gene49436:intron | 40.0% |
| !! | TCAAGATTGCGGGTTTTGAT+GGG | - | chr1.1:68464167-68464186 | MS.gene49436:CDS | 40.0% |
| !! | TTCAAGATTGCGGGTTTTGA+TGG | - | chr1.1:68464166-68464185 | MS.gene49436:CDS | 40.0% |
| !!! | TCTGGAGAAGTTTTTGGTTG+AGG | + | chr1.1:68465563-68465582 | None:intergenic | 40.0% |
| AAGCCTCAACAAGGGATATG+TGG | - | chr1.1:68464195-68464214 | MS.gene49436:CDS | 45.0% | |
| ACACAGGAATGAAAGGCAAG+CGG | + | chr1.1:68464476-68464495 | None:intergenic | 45.0% | |
| CAGAATCACAAGCCAGAAGT+TGG | - | chr1.1:68465429-68465448 | MS.gene49436:CDS | 45.0% | |
| CGCATGTCAATAGTTCTTCG+TGG | - | chr1.1:68465053-68465072 | MS.gene49436:intron | 45.0% | |
| CTGCGATTTACGAAATCCTG+CGG | - | chr1.1:68465475-68465494 | MS.gene49436:CDS | 45.0% | |
| GAATCACAAGCCAGAAGTTG+GGG | - | chr1.1:68465431-68465450 | MS.gene49436:CDS | 45.0% | |
| GCGGCAACAAAGTTATACCA+AGG | - | chr1.1:68465494-68465513 | MS.gene49436:CDS | 45.0% | |
| TGAATCTGGGTTTGTGAGTG+AGG | - | chr1.1:68464304-68464323 | MS.gene49436:CDS | 45.0% | |
| TGGTATAACTTTGTTGCCGC+AGG | + | chr1.1:68465494-68465513 | None:intergenic | 45.0% | |
| TGGTTGCAAAAGAACCTGTC+TGG | - | chr1.1:68464090-68464109 | MS.gene49436:CDS | 45.0% | |
| ! | ACCTGTCTGGTTGCTGTTAT+TGG | - | chr1.1:68464103-68464122 | MS.gene49436:CDS | 45.0% |
| ! | AGATTGGTGGCTATGTTAGC+AGG | - | chr1.1:68464052-68464071 | MS.gene49436:CDS | 45.0% |
| !! | CTGAGGCAAGAATGGACTTT+TGG | - | chr1.1:68465134-68465153 | MS.gene49436:intron | 45.0% |
| CAGCCACATATCCCTTGTTG+AGG | + | chr1.1:68464201-68464220 | None:intergenic | 50.0% | |
| CTCAACAAGGGATATGTGGC+TGG | - | chr1.1:68464199-68464218 | MS.gene49436:CDS | 50.0% | |
| GCCAATAACAGCAACCAGAC+AGG | + | chr1.1:68464107-68464126 | None:intergenic | 50.0% | |
| GTTGAGACATGTCTGGACTC+CGG | + | chr1.1:68464621-68464640 | None:intergenic | 50.0% | |
| ACTCACCTTCTCTGTCGCAG+AGG | + | chr1.1:68464271-68464290 | None:intergenic | 55.0% | |
| ! | ACGAGACTGGAGGGAGTATG+TGG | + | chr1.1:68464717-68464736 | None:intergenic | 55.0% |
| AGGTTCCGGGAGGAGCTAAC+TGG | - | chr1.1:68465537-68465556 | MS.gene49436:CDS | 60.0% | |
| GGCACGACATCCCCAACTTC+TGG | + | chr1.1:68465444-68465463 | None:intergenic | 60.0% | |
| TGAGGCCAGTTAGCTCCTCC+CGG | + | chr1.1:68465545-68465564 | None:intergenic | 60.0% | |
| TGTCGCAGAGGCCCCTTTCT+AGG | + | chr1.1:68464259-68464278 | None:intergenic | 60.0% | |
| AGGGGCCTCTGCGACAGAGA+AGG | - | chr1.1:68464263-68464282 | MS.gene49436:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 68464046 | 68465634 | 68464046 | ID=MS.gene49436 |
| chr1.1 | mRNA | 68464046 | 68465634 | 68464046 | ID=MS.gene49436.t1;Parent=MS.gene49436 |
| chr1.1 | exon | 68465396 | 68465634 | 68465396 | ID=MS.gene49436.t1.exon1;Parent=MS.gene49436.t1 |
| chr1.1 | CDS | 68465396 | 68465634 | 68465396 | ID=cds.MS.gene49436.t1;Parent=MS.gene49436.t1 |
| chr1.1 | exon | 68464046 | 68464334 | 68464046 | ID=MS.gene49436.t1.exon2;Parent=MS.gene49436.t1 |
| chr1.1 | CDS | 68464046 | 68464334 | 68464046 | ID=cds.MS.gene49436.t1;Parent=MS.gene49436.t1 |
| Gene Sequence |
| Protein sequence |
