Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68339.t1 | XP_003613295.2 | 96.5 | 284 | 10 | 0 | 1 | 284 | 68 | 351 | 8.20E-146 | 526.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68339.t1 | Q8VYZ7 | 41.9 | 291 | 158 | 4 | 1 | 285 | 71 | 356 | 1.0e-51 | 205.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68339.t1 | G7K2S7 | 96.5 | 284 | 10 | 0 | 1 | 284 | 68 | 351 | 5.9e-146 | 526.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049149 | MS.gene68339 | 0.835745 | 1.40E-56 | -1.69E-46 |
MS.gene049150 | MS.gene68339 | 0.81124 | 7.73E-51 | -1.69E-46 |
MS.gene049153 | MS.gene68339 | 0.812246 | 4.67E-51 | -1.69E-46 |
MS.gene049400 | MS.gene68339 | -0.80628 | 8.88E-50 | -1.69E-46 |
MS.gene049993 | MS.gene68339 | 0.860452 | 2.05E-63 | -1.69E-46 |
MS.gene050133 | MS.gene68339 | -0.806705 | 7.23E-50 | -1.69E-46 |
MS.gene050426 | MS.gene68339 | -0.835417 | 1.70E-56 | -1.69E-46 |
MS.gene050640 | MS.gene68339 | 0.808849 | 2.53E-50 | -1.69E-46 |
MS.gene051525 | MS.gene68339 | 0.876215 | 1.67E-68 | -1.69E-46 |
MS.gene051568 | MS.gene68339 | 0.817394 | 3.37E-52 | -1.69E-46 |
MS.gene051588 | MS.gene68339 | 0.8307 | 2.53E-55 | -1.69E-46 |
MS.gene051860 | MS.gene68339 | 0.814631 | 1.40E-51 | -1.69E-46 |
MS.gene051983 | MS.gene68339 | 0.811236 | 7.74E-51 | -1.69E-46 |
MS.gene052011 | MS.gene68339 | -0.884897 | 1.29E-71 | -1.69E-46 |
MS.gene052077 | MS.gene68339 | 0.808733 | 2.68E-50 | -1.69E-46 |
MS.gene052134 | MS.gene68339 | 0.821649 | 3.61E-53 | -1.69E-46 |
MS.gene052135 | MS.gene68339 | 0.824549 | 7.60E-54 | -1.69E-46 |
MS.gene052159 | MS.gene68339 | 0.836691 | 8.07E-57 | -1.69E-46 |
MS.gene052253 | MS.gene68339 | 0.820633 | 6.19E-53 | -1.69E-46 |
MS.gene052589 | MS.gene68339 | 0.812247 | 4.67E-51 | -1.69E-46 |
MS.gene052590 | MS.gene68339 | 0.814983 | 1.17E-51 | -1.69E-46 |
MS.gene053169 | MS.gene68339 | 0.807489 | 4.93E-50 | -1.69E-46 |
MS.gene053176 | MS.gene68339 | 0.885306 | 9.11E-72 | -1.69E-46 |
MS.gene053330 | MS.gene68339 | 0.821963 | 3.05E-53 | -1.69E-46 |
MS.gene054102 | MS.gene68339 | 0.838241 | 3.23E-57 | -1.69E-46 |
MS.gene054108 | MS.gene68339 | 0.819832 | 9.44E-53 | -1.69E-46 |
MS.gene054183 | MS.gene68339 | 0.907843 | 3.27E-81 | -1.69E-46 |
MS.gene054349 | MS.gene68339 | 0.816334 | 5.83E-52 | -1.69E-46 |
MS.gene054548 | MS.gene68339 | 0.880025 | 7.71E-70 | -1.69E-46 |
MS.gene054556 | MS.gene68339 | 0.844694 | 6.45E-59 | -1.69E-46 |
MS.gene054719 | MS.gene68339 | 0.849884 | 2.43E-60 | -1.69E-46 |
MS.gene054920 | MS.gene68339 | 0.856568 | 2.95E-62 | -1.69E-46 |
MS.gene055217 | MS.gene68339 | 0.838525 | 2.73E-57 | -1.69E-46 |
MS.gene055358 | MS.gene68339 | 0.831782 | 1.37E-55 | -1.69E-46 |
MS.gene055369 | MS.gene68339 | 0.836579 | 8.61E-57 | -1.69E-46 |
MS.gene055539 | MS.gene68339 | 0.803064 | 4.17E-49 | -1.69E-46 |
MS.gene05553 | MS.gene68339 | 0.837689 | 4.48E-57 | -1.69E-46 |
MS.gene05556 | MS.gene68339 | 0.822124 | 2.80E-53 | -1.69E-46 |
MS.gene055701 | MS.gene68339 | 0.801375 | 9.28E-49 | -1.69E-46 |
MS.gene055744 | MS.gene68339 | 0.802088 | 6.62E-49 | -1.69E-46 |
MS.gene056297 | MS.gene68339 | 0.839854 | 1.24E-57 | -1.69E-46 |
MS.gene056514 | MS.gene68339 | 0.838083 | 3.55E-57 | -1.69E-46 |
MS.gene056723 | MS.gene68339 | 0.844589 | 6.88E-59 | -1.69E-46 |
MS.gene056899 | MS.gene68339 | -0.806833 | 6.79E-50 | -1.69E-46 |
MS.gene056979 | MS.gene68339 | 0.806023 | 1.01E-49 | -1.69E-46 |
MS.gene057396 | MS.gene68339 | 0.80523 | 1.48E-49 | -1.69E-46 |
MS.gene057476 | MS.gene68339 | 0.852302 | 5.05E-61 | -1.69E-46 |
MS.gene057749 | MS.gene68339 | 0.808448 | 3.08E-50 | -1.69E-46 |
MS.gene057823 | MS.gene68339 | 0.801422 | 9.07E-49 | -1.69E-46 |
MS.gene057825 | MS.gene68339 | 0.819077 | 1.40E-52 | -1.69E-46 |
MS.gene057843 | MS.gene68339 | 0.803837 | 2.88E-49 | -1.69E-46 |
MS.gene057863 | MS.gene68339 | 0.806763 | 7.02E-50 | -1.69E-46 |
MS.gene057888 | MS.gene68339 | 0.837859 | 4.05E-57 | -1.69E-46 |
MS.gene058142 | MS.gene68339 | 0.82825 | 9.98E-55 | -1.69E-46 |
MS.gene058208 | MS.gene68339 | 0.836164 | 1.10E-56 | -1.69E-46 |
MS.gene058209 | MS.gene68339 | 0.805624 | 1.22E-49 | -1.69E-46 |
MS.gene058444 | MS.gene68339 | 0.809324 | 2.00E-50 | -1.69E-46 |
MS.gene058700 | MS.gene68339 | 0.831107 | 2.01E-55 | -1.69E-46 |
MS.gene05886 | MS.gene68339 | 0.820854 | 5.51E-53 | -1.69E-46 |
MS.gene058885 | MS.gene68339 | 0.809953 | 1.47E-50 | -1.69E-46 |
MS.gene058935 | MS.gene68339 | 0.803501 | 3.38E-49 | -1.69E-46 |
MS.gene059011 | MS.gene68339 | 0.805083 | 1.58E-49 | -1.69E-46 |
MS.gene059082 | MS.gene68339 | 0.810796 | 9.64E-51 | -1.69E-46 |
MS.gene059247 | MS.gene68339 | 0.820042 | 8.45E-53 | -1.69E-46 |
MS.gene059420 | MS.gene68339 | 0.879305 | 1.39E-69 | -1.69E-46 |
MS.gene059462 | MS.gene68339 | 0.825953 | 3.54E-54 | -1.69E-46 |
MS.gene059609 | MS.gene68339 | 0.828534 | 8.52E-55 | -1.69E-46 |
MS.gene059868 | MS.gene68339 | 0.825719 | 4.02E-54 | -1.69E-46 |
MS.gene059958 | MS.gene68339 | 0.810864 | 9.32E-51 | -1.69E-46 |
MS.gene060038 | MS.gene68339 | 0.82994 | 3.89E-55 | -1.69E-46 |
MS.gene061114 | MS.gene68339 | -0.857112 | 2.04E-62 | -1.69E-46 |
MS.gene061154 | MS.gene68339 | 0.812259 | 4.64E-51 | -1.69E-46 |
MS.gene061214 | MS.gene68339 | 0.810791 | 9.67E-51 | -1.69E-46 |
MS.gene061215 | MS.gene68339 | 0.808694 | 2.73E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 57 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACCAAATTTGAATTGGATTT+TGG | 0.037445 | 5.2:+25555016 | MS.gene68339:CDS |
CCCAAAATCCAATTCAAATT+TGG | 0.154023 | 5.2:-25555017 | None:intergenic |
TTGATCTCTAACCACAATTA+AGG | 0.270039 | 5.2:-25555281 | None:intergenic |
TACTATAGTTCCTATTGCTT+TGG | 0.311918 | 5.2:-25554901 | None:intergenic |
TTAGGATTGAAAGAATATAT+TGG | 0.312093 | 5.2:+25554859 | MS.gene68339:intron |
TTCAATGTGGTACATATATC+AGG | 0.347163 | 5.2:+25555073 | MS.gene68339:CDS |
ATAAGGAAATTCCTTCTTGC+GGG | 0.352034 | 5.2:+25557287 | MS.gene68339:intron |
TCCGCCTTTAGCTTTGTTGA+TGG | 0.359173 | 5.2:-25557344 | None:intergenic |
ATGGGAACTAAAGCTTGATA+TGG | 0.364178 | 5.2:+25555309 | MS.gene68339:CDS |
TATTGAAAGTGGAAGTGCTT+GGG | 0.370316 | 5.2:+25557311 | MS.gene68339:CDS |
TAACAGGCAATAGCTGCAAT+AGG | 0.395737 | 5.2:+25556685 | MS.gene68339:intron |
CCAAAGTGCAGAGAAAGTTA+AGG | 0.408072 | 5.2:-25549657 | None:intergenic |
ATGACTCTTTGCAGTTTGAT+TGG | 0.423275 | 5.2:+25556949 | MS.gene68339:intron |
TCAGCACAGATAATGACTTA+TGG | 0.428918 | 5.2:+25553042 | MS.gene68339:CDS |
AGTAGCCAAGCCAAAGCAAT+AGG | 0.431540 | 5.2:+25554891 | MS.gene68339:CDS |
CCTTAACTTTCTCTGCACTT+TGG | 0.436623 | 5.2:+25549657 | MS.gene68339:CDS |
AACAAAGCTAAAGGCGGAAT+CGG | 0.447388 | 5.2:+25557349 | MS.gene68339:CDS |
TGGGAACTAAAGCTTGATAT+GGG | 0.448002 | 5.2:+25555310 | MS.gene68339:CDS |
CGAAGCTTTGCCCCATTGCA+CGG | 0.455349 | 5.2:-25557001 | None:intergenic |
CGTGCAATGGGGCAAAGCTT+CGG | 0.467000 | 5.2:+25557002 | MS.gene68339:CDS |
AATAGGAACTATAGTATCAA+TGG | 0.467878 | 5.2:+25554908 | MS.gene68339:CDS |
GATGAATGTATCTTGAAGAT+TGG | 0.472697 | 5.2:-25554966 | None:intergenic |
TAGTTCCTATTGCTTTGGCT+TGG | 0.473979 | 5.2:-25554896 | None:intergenic |
ATTTGTTGTCATATTATACA+AGG | 0.490744 | 5.2:+25554938 | MS.gene68339:CDS |
CAAAGTGCAGAGAAAGTTAA+GGG | 0.497706 | 5.2:-25549656 | None:intergenic |
AACAGGCAATAGCTGCAATA+GGG | 0.513949 | 5.2:+25556686 | MS.gene68339:intron |
TGTGCTATGTTTAAACCGAT+CGG | 0.521072 | 5.2:+25556760 | MS.gene68339:CDS |
GCAAGTACAAAAGTGAAAGC+TGG | 0.527966 | 5.2:-25553117 | None:intergenic |
TTGTCCATCAACAAAGCTAA+AGG | 0.532127 | 5.2:+25557340 | MS.gene68339:CDS |
TTAAACATAGCACAAAATAG+AGG | 0.532153 | 5.2:-25556751 | None:intergenic |
TTCTTGCGGGGTATTGAAAG+TGG | 0.534329 | 5.2:+25557300 | MS.gene68339:CDS |
GTATTGAAAGTGGAAGTGCT+TGG | 0.542682 | 5.2:+25557310 | MS.gene68339:CDS |
TTGTAACAATGGAACAACAT+TGG | 0.549077 | 5.2:-25557067 | None:intergenic |
AAGACTATGACTATTACAGC+AGG | 0.552572 | 5.2:-25555217 | None:intergenic |
ACATGGTGCGTGCAAAGAGC+TGG | 0.555731 | 5.2:+25556727 | MS.gene68339:CDS |
ATTGAAAGTGGAAGTGCTTG+GGG | 0.555960 | 5.2:+25557312 | MS.gene68339:CDS |
GGAACTATAGTATCAATGGC+TGG | 0.566753 | 5.2:+25554912 | MS.gene68339:CDS |
CATAAGGAAATTCCTTCTTG+CGG | 0.570579 | 5.2:+25557286 | MS.gene68339:intron |
GAATGTATCTTGAAGATTGG+TGG | 0.575361 | 5.2:-25554963 | None:intergenic |
ACTTTCAATACCCCGCAAGA+AGG | 0.576071 | 5.2:-25557298 | None:intergenic |
CAAAAGTGAAAGCTGGAATG+AGG | 0.578615 | 5.2:-25553110 | None:intergenic |
TGGTTAGAGATCAAAGTGCA+TGG | 0.579684 | 5.2:+25555290 | MS.gene68339:CDS |
ATTCTTTACTTTCTTCAATG+TGG | 0.587667 | 5.2:+25555060 | MS.gene68339:CDS |
GGGAGTATATGCCTTAATTG+TGG | 0.595399 | 5.2:+25555270 | MS.gene68339:CDS |
TTCGATACTTGTTACAAACA+TGG | 0.608790 | 5.2:+25556710 | MS.gene68339:CDS |
ACGGTGAAGATTATTCCGAT+CGG | 0.613970 | 5.2:-25556775 | None:intergenic |
TAAGGAAATTCCTTCTTGCG+GGG | 0.619353 | 5.2:+25557288 | MS.gene68339:intron |
GGTGCTGTAATAATCGTGGT+AGG | 0.620799 | 5.2:+25556970 | MS.gene68339:CDS |
TTTGTTGTCATATTATACAA+GGG | 0.622068 | 5.2:+25554939 | MS.gene68339:CDS |
GGTTAGAGATCAAAGTGCAT+GGG | 0.639263 | 5.2:+25555291 | MS.gene68339:CDS |
GCACAGATAATGACTTATGG+TGG | 0.656302 | 5.2:+25553045 | MS.gene68339:CDS |
TCCATCAACAAAGCTAAAGG+CGG | 0.661588 | 5.2:+25557343 | MS.gene68339:CDS |
GATTGGTGCTGTAATAATCG+TGG | 0.671111 | 5.2:+25556966 | MS.gene68339:CDS |
AGCATTGCAGATGCAAGAGT+AGG | 0.675175 | 5.2:-25553084 | None:intergenic |
GGGAACTAAAGCTTGATATG+GGG | 0.684135 | 5.2:+25555311 | MS.gene68339:CDS |
AGACTATGACTATTACAGCA+GGG | 0.696834 | 5.2:-25555216 | None:intergenic |
AGTGCAGAGAAAGTTAAGGG+AGG | 0.725600 | 5.2:-25549653 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 25549643 | 25557387 | 25549643 | ID=MS.gene68339 |
chr5.2 | mRNA | 25549643 | 25557387 | 25549643 | ID=MS.gene68339.t1;Parent=MS.gene68339 |
chr5.2 | exon | 25549643 | 25549705 | 25549643 | ID=MS.gene68339.t1.exon1;Parent=MS.gene68339.t1 |
chr5.2 | CDS | 25549643 | 25549705 | 25549643 | ID=cds.MS.gene68339.t1;Parent=MS.gene68339.t1 |
chr5.2 | exon | 25553038 | 25553151 | 25553038 | ID=MS.gene68339.t1.exon2;Parent=MS.gene68339.t1 |
chr5.2 | CDS | 25553038 | 25553151 | 25553038 | ID=cds.MS.gene68339.t1;Parent=MS.gene68339.t1 |
chr5.2 | exon | 25554863 | 25555094 | 25554863 | ID=MS.gene68339.t1.exon3;Parent=MS.gene68339.t1 |
chr5.2 | CDS | 25554863 | 25555094 | 25554863 | ID=cds.MS.gene68339.t1;Parent=MS.gene68339.t1 |
chr5.2 | exon | 25555196 | 25555354 | 25555196 | ID=MS.gene68339.t1.exon4;Parent=MS.gene68339.t1 |
chr5.2 | CDS | 25555196 | 25555354 | 25555196 | ID=cds.MS.gene68339.t1;Parent=MS.gene68339.t1 |
chr5.2 | exon | 25556691 | 25556842 | 25556691 | ID=MS.gene68339.t1.exon5;Parent=MS.gene68339.t1 |
chr5.2 | CDS | 25556691 | 25556842 | 25556691 | ID=cds.MS.gene68339.t1;Parent=MS.gene68339.t1 |
chr5.2 | exon | 25556963 | 25557095 | 25556963 | ID=MS.gene68339.t1.exon6;Parent=MS.gene68339.t1 |
chr5.2 | CDS | 25556963 | 25557095 | 25556963 | ID=cds.MS.gene68339.t1;Parent=MS.gene68339.t1 |
chr5.2 | exon | 25557292 | 25557387 | 25557292 | ID=MS.gene68339.t1.exon7;Parent=MS.gene68339.t1 |
chr5.2 | CDS | 25557292 | 25557387 | 25557292 | ID=cds.MS.gene68339.t1;Parent=MS.gene68339.t1 |
Gene Sequence |
Protein sequence |