AlfalfaGEDB | MS.gene68339

M. sativa cultivar XinJiangDaYe / MS.gene68339

KEGG: -
GO: GO:0005575 GO:0016020 GO:0016021 GO:0031224 GO:0110165
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68339.t1	XP_003613295.2	96.5	284	10	0	1	284	68	351	8.20E-146	526.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68339.t1	Q8VYZ7	41.9	291	158	4	1	285	71	356	1.0e-51	205.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68339.t1	G7K2S7	96.5	284	10	0	1	284	68	351	5.9e-146	526.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049149	MS.gene68339	0.835745	1.40E-56	-1.69E-46
MS.gene049150	MS.gene68339	0.81124	7.73E-51	-1.69E-46
MS.gene049153	MS.gene68339	0.812246	4.67E-51	-1.69E-46
MS.gene049400	MS.gene68339	-0.80628	8.88E-50	-1.69E-46
MS.gene049993	MS.gene68339	0.860452	2.05E-63	-1.69E-46
MS.gene050133	MS.gene68339	-0.806705	7.23E-50	-1.69E-46
MS.gene050426	MS.gene68339	-0.835417	1.70E-56	-1.69E-46
MS.gene050640	MS.gene68339	0.808849	2.53E-50	-1.69E-46
MS.gene051525	MS.gene68339	0.876215	1.67E-68	-1.69E-46
MS.gene051568	MS.gene68339	0.817394	3.37E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 57 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAAGCTAAAGGCGGAAT+CGG	0.447388	5.2:+25557349	MS.gene68339:CDS
AACAGGCAATAGCTGCAATA+GGG	0.513949	5.2:+25556686	MS.gene68339:intron
AAGACTATGACTATTACAGC+AGG	0.552572	5.2:-25555217	None:intergenic
AATAGGAACTATAGTATCAA+TGG	0.467878	5.2:+25554908	MS.gene68339:CDS
ACATGGTGCGTGCAAAGAGC+TGG	0.555731	5.2:+25556727	MS.gene68339:CDS
ACCAAATTTGAATTGGATTT+TGG	0.037445	5.2:+25555016	MS.gene68339:CDS
ACGGTGAAGATTATTCCGAT+CGG	0.613970	5.2:-25556775	None:intergenic
ACTTTCAATACCCCGCAAGA+AGG	0.576071	5.2:-25557298	None:intergenic
AGACTATGACTATTACAGCA+GGG	0.696834	5.2:-25555216	None:intergenic
AGCATTGCAGATGCAAGAGT+AGG	0.675175	5.2:-25553084	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	25549643	25557387	25549643	ID=MS.gene68339
chr5.2	mRNA	25549643	25557387	25549643	ID=MS.gene68339.t1;Parent=MS.gene68339
chr5.2	exon	25549643	25549705	25549643	ID=MS.gene68339.t1.exon1;Parent=MS.gene68339.t1
chr5.2	CDS	25549643	25549705	25549643	ID=cds.MS.gene68339.t1;Parent=MS.gene68339.t1
chr5.2	exon	25553038	25553151	25553038	ID=MS.gene68339.t1.exon2;Parent=MS.gene68339.t1
chr5.2	CDS	25553038	25553151	25553038	ID=cds.MS.gene68339.t1;Parent=MS.gene68339.t1
chr5.2	exon	25554863	25555094	25554863	ID=MS.gene68339.t1.exon3;Parent=MS.gene68339.t1
chr5.2	CDS	25554863	25555094	25554863	ID=cds.MS.gene68339.t1;Parent=MS.gene68339.t1
chr5.2	exon	25555196	25555354	25555196	ID=MS.gene68339.t1.exon4;Parent=MS.gene68339.t1
chr5.2	CDS	25555196	25555354	25555196	ID=cds.MS.gene68339.t1;Parent=MS.gene68339.t1
chr5.2	exon	25556691	25556842	25556691	ID=MS.gene68339.t1.exon5;Parent=MS.gene68339.t1
chr5.2	CDS	25556691	25556842	25556691	ID=cds.MS.gene68339.t1;Parent=MS.gene68339.t1
chr5.2	exon	25556963	25557095	25556963	ID=MS.gene68339.t1.exon6;Parent=MS.gene68339.t1
chr5.2	CDS	25556963	25557095	25556963	ID=cds.MS.gene68339.t1;Parent=MS.gene68339.t1
chr5.2	exon	25557292	25557387	25557292	ID=MS.gene68339.t1.exon7;Parent=MS.gene68339.t1
chr5.2	CDS	25557292	25557387	25557292	ID=cds.MS.gene68339.t1;Parent=MS.gene68339.t1

Gene Sequence

>MS.gene68339

GTCACAACGTCCTCCCTTAACTTTCTCTGCACTTTGGAGCTTCTTTTTGCTTGCTCTCATAGGGTTAGTATTTCTATTTTAATTTGTTTCTAACTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTGTTGTGATGAAGTAGTACTTCCACCCACTCAAAACATATCATATTTATTTCATTAAAGTTACCATAATCGACTTTTCCCTGAGGTAAAGGTCATTATTCCTTTTAGTAAGTGACAAAAAATTTAATATTTAATATAAACTCTAAAATTGATAATTGTGTATAATAATTGTTGCGAATTCGATGAAAAACTCACACCAATAACAACTTGATGTGTGGAGCAAGGGATAATTAAGCAACCAAAATCAAAGTGTATGGAACAATTATAAACACAAGCCAAAAGTAGAAAACAACAGCGAGAGAAAAGGAAGAGAGAACACAAAGAATTTGTTGACCCAGTTCGGTCCAAATTGACCTAGTCTGGGGGAGAGAGCAGCCCTCCGTTCCACTATATGATGAGTAACGTTACAAAAGAGATTTCAATGGGTTACAAGAATAAGTCTCCCGCCTAATTCTACCCAAATCCCAGCCTCTTCCCGTAACCAAGAGACTCAATCCTAATAGTGTTTCCCAAGGTGAATCAACCTTCAAACCCTAGTTTGTTGCCAAGAGACAAACTCTATACAAACCCTAGTTTGATTTCTAAACCCTTGTTTCAGCCCCCTCTATCTCTCTCAAAATAGTCTGATACAAGGTCTATATTTATAGTAAAAGAAACTCCCGTAAAATTGTAACAAATCTGGCCCAAAAATACGTTTCTAAAAAAATAACAGCACGCGAAATCGGCCACCGATTTTCCAAATCGGCCACCGATTTTTCCCGAACAGAAAGCCTCCCAAAAGGCAGCCAAAATCGGCCACCGATTTTCCAAATCGGCCACCGATTTGTACTTTCAGCAAACATCAATTTTGGCCTCCAAACTCCAATTTTGAGTCACTTTCACAACAATCTCCACCTTGACTCCAAATTAGTGATGATGCCCATTTAACATCAACACCTTGCTGCTCTTTCCCTTGCTTCCCACTACACCAAGTAGCTCCACAAGTTTGCACCCTAATCTCTTCAATCATCGGAATGCCTTCCGCCCCTTTGAAAATCCTTGTGTCCAAACTACTCAAGGAATTTTAGGTAGTTCCACAAGTACACACCTTAACCTCTTCAGCCATCGGAATGTCTTCCGCCTTCTCGAAGATCCTTGTATCCAAACTACACTAGGAATTTCAGGTAGTTCTACAAGACTACACCATACCTCTTCAATACGAGACATCTCCCGCTTCCTTGAAGATCACCTTGCATCCAATCACCCTTGGACTTTTAGGGTAATTCCACAAGCCGTGCTATACATTCTTCAACCTCCGGAATGTCTTCCGTCTTCATGAAGAAAACCCTTGCTCACCACTAGAGCATAGCACCCAAGGTCCTCCATAGTCGTACCACTCCCGGTGTGTTCAACTCCACCTAAAGCTGAGCTTCCAACCTCTCAACTAGCAAATGAGTACATCCCACTATGTCTTCCTTGAACCTCCACCTCAACCGGTAGATCATGAGTATTCTTACCACCGCCTCTCCAGGCTGATGTTGAGTGTTTAACGTCTCTCCAGACGACCACCGCTCTACCAGGCATCACCCCCAAGGTGAGAAACATCACCTTCATCCTCCAAACAGCACACCATCAAAGCACCTGCATCCTCATAACCCTCAGAGACAATTTGTACGGAATTACCATTAATCTCCGGACAATCCTTCTTGAAGTGACCCATCTTGTTACACTTAAAGCATTTAAACTTTGTCTTGTTACTACTCTTTCCCCGGTTACCTCTACCTCCACCATTCCCTCTTGAAACACTTAGGCCTTCCCCGTTTTCATCAACTCTCAAGTCCTTCGACTTAGTCAACTCCTTGGTTCTCAAAGCCGCTTGAACTTCTTCCAAGGTAACAGTGCCTTCTTTTCCATAGAGCATGGTATCTTTAAACGATTCAAAAGATCTAGGTAGAGCACACAACAAGAGTATAGCTTTATCTTCATCCTCAAGATTCACCTCAATATTCTCCAAGTCATCAAGGATTTTGTTGAACTCCGTAAGTTGCTCCATGATGGCCTTTGACTCCACCATCTTGAATGAGTAGAGTTGTTGCTTTAGGAATTGCCGATGAGCCAAAGACTTTGTCATATACAAAGATTCCAACTTTGCCCACATCGATGCCGCGGTTGGTTCCTTTGCTACTTCTCTCAAAACTTTATCTCCGAGGCACAAGACAATGGCACTCCTGGCCTTGTCCACCATCTCGGTCTTCTCCGCTCGTGTCATGGTGACCGGTAACGAACCTTCACCCTTCAAAGCTTTCTCACACTTTTGCTGTATCAACACCGCTTCCATCTTTACCTTCCATAACCCAAAATCGTTATCTCCGGTAAACTTCTCAATATCCCACTTCGAACCCATGGTACTTGATTATCCTTTGACCTTTGCCCCACGGTGGGCGCCAATTGTTGCGAATTCGATGAAAAACTCACACCAATAACAACTTGATGTGTGGAGCAAGGGATAATTAAGCAACCAAAATCAAAGTGTATGGAACAATTATAAACACAAGCCAAAAGTAGAAAACAACAGCGAGAGAAAAGGAAGAGAGAACACAAAGAATTTGTTGACCCAGTTCGGTCCAAATTGACCTAGTCTGGGGGAGAGAGCAGCCCTCCGTTCCACTATATGATGAGTAACGTTACAAAAGAGATTTCAATGGGTTACAAGAATAAGTCTCCCGCCTAATTCTACCCAAATCCCAGCCTCTTCCCGTAACCAAGAGACTCAATCCTAATAGTGTTTCCCAAGGTGAATCAACCTTCAAACCCTAGTTTGTTGCCAAGAGACAAACTCTATACAAACCCTAGTTTGATTTCTAAACCCTTGTTTCAGCCCCCTCTATCTCTCTCAAAATAGTCTGATACAAGGTCTATATTTATAGTAAAAGAAACTCCCATAAAATTGTAACAAATCTGGCCCAAAAATACGTTTCTGAAAAATAACAGCACGCGAAATCGGCCACCGATTTTCCAAATCGGCCACCGATTTTTCCCGAACAGAAAGCCTCCCAAAAGGCAGCCAAAATCGGCCACCGATTTTCCAAATCGGCCACCGATTTGTACTTTCAGCAAACATCAATTTTGGCCTCCAAACTCCAATTTTGAGTCACTTTCACAACAATAATATAATATAATTTTCTTCTATCAGATTTTATTTCCAAAACTTCCTTTCTCTTGGATTAAATTATTTTACCTTGCAGATCTTCAGCACAGATAATGACTTATGGTGGCATAGAACTGAGTTCACCTACTCTTGCATCTGCAATGCTTAACCTCATTCCAGCTTTCACTTTTGTACTTGCACTGATTTTCAGGTTCCTCGTATAATTTTTAAACTTTATTGGAAGGTGAATTTTATGGAGAATATCTTTCTAACACTTTATTTTAACAATTATTCTTTTATTAGATAAAACTCGGATGGATCCCACATTTTAAAAATGGATTTCAGGTAAAATGGTGAGACCCAAATGAATTTTAATCAATAAAAGAATAAAAGTTAAAGAGAGTTTAAGAAAGAGAGTGTTATTATCATTTGTCTTACCTGAAAACAATAGGATTTTATTTGTGAAATGAAGATTTTGGAGCATATCATCGGACAAGTGAAATACTTACTTAATCACAAATATAAATAAAAGATGGTTAGTCACACACACATAAATTGAAAGAAAAAATAAAGAGATAATAATTAAATGATATTACTGAATTATTTCTTATTTATTTTTCTCCATTATGTCTAAACTTTTTTCATTTGTATTTGTATTGGCATTTGTATTCAAATAAGTTAAGATATGCTCGGACAATTAAAAAATATATTTTCATGGCACAAAACATTTACTCATAACTTCATACCTTGTCTTTAGATGTGATACAAAAATTTCACCAATAATAGTTGAACTTTGAAGTTAATTAAATGTTGGGGCGGTACTAAGTACTATTATATGAGGTGACATGTCACCTAATAATTTACACTTTATGTATTTCTTTTTCAATGTTTATATATTTCGAATACCCTTCTATTACATATTATTATTCATTTAACATATCAGTTTTAAAATATCACATTTTATATTTTTATCTCTCTCAATATGTAAATCAATATTGGGTGTCTATCCATAATTTACCTTGCTTTTATGAGATTTTTTTTTTTTTTTTTGCAATATGATGATATTTTGTTGAGTATTGGTATATTTAAGCCAAATATTGAACAATTTATAAAATCACTCCAAAAACAATTCATATGATTTTTAAAATAAGTTTTCCCTCTTTTTTAACCAGATTAACATTTTTTTTTTTGTGGTTTTATATGCATGGATTTAGATTTAAATTTAGTATTTTTAAAAGATTTAAATTTAGTATTTTTAAAATACCAATATAAAATTTGTTTTTCTGAATCCAATCATTGGAGTGGTGATATCATTGAATCCAATTCCAATATCACGACTAAGAGGAATGAATACTTTGATACTTTATAACCATACTTTGATACTTTATTTATAACCATTCAAATTGTTTAGTTTATTGATTCTTTGATACTTTATTTAAAAGGTTATACTCTAGATTACAATTTGTGGCTGCACTGTAATTAGAGAAGTATTGCAGAGAATTTTGACAAATTAAGACAAACATGAGTACAATCATGATTGAAGAGACATCATTATTAAATTTGGCACCTCATACATCATTATTAAAAATAAATGATATCCCAACAATTTTTGAGATAATTCTCACTTATACTCTCATTATTCTCTCTCTATTGATTTTATAATAAAAAGAGAGAAAAGAAGAAGGTTATCCCAACAAAAATCACAAAATAATTATACAAATATCACTATTCTTATCAAAATTTATAAAACTTTTAAATGGAGGCAAAACATCAAGGAAGCTCTTGATTCTATGTGATGCCATGGTCTAGTGATATGATAATAATATTCTAAATATTTTAATTGCAATATCTCAATTAGTAATCATGAAGATCTCAATTTAATACTTGACAAAAAAAATATCTCAATTTAATGGTTTAATTAGGATTGAAAGAATATATTGGAGACACTCTAGTAGCCAAGCCAAAGCAATAGGAACTATAGTATCAATGGCTGGAGCATTTGTTGTCATATTATACAAGGGTCCACCAATCTTCAAGATACATTCATCAATTTCTTACAACACACTTCAATTTTCACCAAATTTGAATTGGATTTTGGGAGGGTTTTTATGTGCTGGAGATTCTTTACTTTCTTCAATGTGGTACATATATCAGGTCCTACACTTTTTACCATAATATGGGACCTTTTTCTTTTGAGTAATATGTTTTTTACCATAAGGTAAATTAATTTTTGGTTTTCCCGCTACATATTTTAGGTTTCAGTAACAAAGAAATACCCTGCTGTAATAGTCATAGTCTTCTTCCAAGTCTTTTTTATCACAATTCAAACGGGAGTATATGCCTTAATTGTGGTTAGAGATCAAAGTGCATGGGAACTAAAGCTTGATATGGGGTTGATTGTCATTTTATACCAGGTAATCATTCATTTATTATTGTCTATAAACATGAAATTTATTGGGTAGGTTTTTTTTTTTGGTACACTATTGGGATGGTTTTAAATAATATCATGTGATGCGCGCGAATTATATTTGAACAACGATTTTTATAACAACTTTCTCTTTCATACTTACATTATATATTTATTTTCTCTCTTTATTGTTTTAGGTTAGTGTCAATACCTAAATTTTTTTTGTATATTATGGTTGTCCAACAAGTTGTCTCACGGAAAAATTGCTCAAATAATATTCCTCTTTTTCAAACTACTAAACAAAATGTAACACGGCAGTATCTTTTTGTGGTATATTTAGAGAGAATTTGTTGAGGGGTTATGATATATACTTGTAGAGAGGGGTAGGGATATTTCAAAAAAAAAATTGATTATGACAGGAATTTGGTATTAAGAATGAAAATTTAAGATATAAGTCATGAATTAATCAAAATATTAAAATATACTCCTTTCGGTCACTATTATAAGCAAATTTTGACTTTTTAGGTTCATTCAATAAATGATGTATGTGGACTACAATGTAGTCTACATACATCATTTATTGAATGAATCTAAAAAGTAAAAATTTGCTTATAATAGTGACCAGAGGGAGTACCTTGCAAGAAATCGTGAGTATCTCTGTCAAGGGGAGAATAAAAATCATTCAACTTGTGGTATTCCCTCTTATCTTGGCACACATAAATATATGCCACAGAAAATAATGATTTATGAAGTGTCACCATTTGTCCATTAGTTATAAGGACCGGACAACATTCAGGACCACATTATTAAGCTTACATTTTGCAAGATACGTAAGATGAACGTTATTACAACAATTATTTATGTGTAAACTTTTGAAATAACCATAAATTTATAAAAAAAAGTATGTATTAACACAGAAACTAAAATAACAGATAAAGAAAGTAAAAATATGATGTAAATATACGATAGAAAAAATTATCATAAAAGTTATTACAAAATGATTGTACAAATATTATTTCTCTAAAACAAACCGAAGAAAAATGATAATTTGTTCGCTCAAGGTAGACGCTAAAAAATTAATTGCTATTGTCGTTGTTTATTTTTGTGAAATGAAGTAGCTGTTTACTTTTGTGTCACACGTGACAAAGCTTAATTAGTTGCTAAAAAAGTTAGTTGCTCTCCTCGTACCGTACTATTTTTTAATATTAAATGTTATAGTCAGTTGTTAAATTAATTTTCTTTTTTGTTTTCTTCGTTTGATTTTGAATCTCGAATCTTAAATCTATGTCATTTGCTTAAATGAGATGAACTATTCAACGCCTCTTATATATCCCTGTTAACAGGCAATAGCTGCAATAGGGATTCGATACTTGTTACAAACATGGTGCGTGCAAAGAGCTGGTCCTCTATTTTGTGCTATGTTTAAACCGATCGGAATAATCTTCACCGTTTTTTTGGGTTCAATTTTTCTAGGAGATGACTTTTATCTTGGAAGGTACATATATAAAACTAGTGAATCATTTTAAGTAACATAGTTAATTACTTAATACATGTTTATAGTGAGATTTTGTTTTGCATAATATTGAGAATAAATTTCAAAAATGACTCTTTGCAGTTTGATTGGTGCTGTAATAATCGTGGTAGGATTTTATGCCGTGCAATGGGGCAAAGCTTCGGAAGAAAAAGTTGGGAAAGGGATTCAAAACTTAGAGACACAGTCCAATGTTGTTCCATTGTTACAAAACAAAGTATAATGTTAATAACACTTTTTTTTCTTTTTGTGAAAAGTTAATAACACACTTTCTAACTCATACTTTTAATTTTTGAATCCTTAACAAGAACCCATAACTATTATTAATTTATATGAGTATTACTAATTTATACTAAACGTATCTAAAATACACATGATTTAATGAACATCATGTGAATGGCATCCAACATAAGGAAATTCCTTCTTGCGGGGTATTGAAAGTGGAAGTGCTTGGGGATAAGTTGTCCATCAACAAAGCTAAAGGCGGAATCGGATTTCATAAGTCATAA

Protein sequence

>MS.gene68339.t1

VTTSSLNFLCTLELLFACSHRIFSTDNDLWWHRTEFTYSCICNAUPHSSFHFCTCTDFQDUKNILETLUUPSQSNRNYSINGWSICCHIIQGSTNLQDTFINFLQHTSIFTKFELDFGRVFMCWRFFTFFNVVHISGFSNKEIPCCNSHSLLPSLFYHNSNGSICLNCGURSKCMGTKAUYGVDCHFIPGNSCNRDSILVTNMVRAKSWSSILCYVUTDRNNLHRFFGFNFSRRULLSWKFDWCCNNRGRILCRAMGQSFGRKSWERDSKLRDTVQCCSIVTKQRNSFLRGIESGSAWGUVVHQQSURRNRISUVI