AlfalfaGEDB | MS.gene070275

M. sativa cultivar XinJiangDaYe / MS.gene070275

KEGG: K02183
GO: GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872
PFAM: PF13499.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070275.t1	XP_003610067.2	97	198	6	0	1	198	1	198	6.20E-83	317

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070275.t1	Q93Z27	37.0	200	108	3	6	198	16	204	5.2e-22	105.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070275.t1	G7JUB9	97.0	198	6	0	1	198	1	198	4.5e-83	317.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene070275	0.804156	2.47E-49	-1.69E-46
MS.gene049283	MS.gene070275	0.802502	5.44E-49	-1.69E-46
MS.gene049567	MS.gene070275	0.800041	1.74E-48	-1.69E-46
MS.gene049652	MS.gene070275	0.827124	1.86E-54	-1.69E-46
MS.gene04998	MS.gene070275	0.81533	9.77E-52	-1.69E-46
MS.gene050961	MS.gene070275	0.817105	3.92E-52	-1.69E-46
MS.gene051279	MS.gene070275	0.801406	9.14E-49	-1.69E-46
MS.gene051490	MS.gene070275	0.817577	3.07E-52	-1.69E-46
MS.gene051492	MS.gene070275	0.808635	2.81E-50	-1.69E-46
MS.gene051676	MS.gene070275	0.810354	1.20E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070275.t1	MTR_4g127560	96.970	198	6	0	1	198	1	198	3.68e-139	387
MS.gene070275.t1	MTR_5g025690	63.874	191	61	2	8	198	18	200	5.11e-79	234
MS.gene070275.t1	MTR_7g011010	62.051	195	70	3	6	198	10	202	4.83e-70	212
MS.gene070275.t1	MTR_4g082050	47.458	118	57	4	81	197	29	142	7.75e-23	89.7
MS.gene070275.t1	MTR_7g074240	46.067	89	47	1	108	195	84	172	1.41e-16	74.3
MS.gene070275.t1	MTR_2g098890	29.744	195	116	4	19	194	11	203	1.39e-15	72.4
MS.gene070275.t1	MTR_2g023310	61.111	54	21	0	78	131	44	97	2.31e-14	66.2
MS.gene070275.t1	MTR_4g067270	47.761	67	35	0	129	195	77	143	7.95e-14	66.2
MS.gene070275.t1	MTR_4g115170	48.000	75	35	1	125	195	144	218	1.74e-12	64.3
MS.gene070275.t1	MTR_3g088655	41.053	95	51	1	99	193	65	154	3.08e-12	62.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene070275.t1	AT5G39670	48.000	200	91	6	2	198	15	204	1.30e-47	155
MS.gene070275.t1	AT3G29000	59.459	111	43	1	87	197	85	193	1.69e-37	129
MS.gene070275.t1	AT4G20780	60.000	65	26	0	130	194	120	184	9.45e-20	82.8
MS.gene070275.t1	AT5G44460	54.545	66	30	0	130	195	111	176	5.80e-17	75.5
MS.gene070275.t1	AT3G59440	30.000	190	112	6	19	195	7	188	1.01e-16	75.1
MS.gene070275.t1	AT3G47480	48.101	79	39	2	120	197	105	182	1.23e-16	74.7
MS.gene070275.t1	AT2G43290	37.719	114	67	3	83	194	96	207	3.86e-16	73.9
MS.gene070275.t1	AT4G03290	53.125	64	30	0	131	194	82	145	1.74e-15	70.9
MS.gene070275.t1	AT1G05990	50.769	65	32	0	131	195	80	144	3.26e-15	70.1
MS.gene070275.t1	AT3G07490	51.613	62	30	0	134	195	82	143	2.04e-14	68.2

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Find 23 sgRNAs with CRISPR-Local

Find 34 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTCAAGTATAGGAAA+AGG	0.526434	8.2:+5686849	None:intergenic
AAACACTTCACAAAGCTCCT+TGG	0.468222	8.2:+5686580	None:intergenic
AACAAACAAATCAGCAGAAG+TGG	0.517182	8.2:+5686336	None:intergenic
AACTCAACTTCTCCCTTATT+TGG	0.181162	8.2:-5686881	MS.gene070275:CDS
AAGGTCTATGAAACCAAATA+AGG	0.374441	8.2:+5686868	None:intergenic
AATTCATTCTGGTAGCTCAG+AGG	0.688478	8.2:-5686774	MS.gene070275:CDS
AGAGAATGAGCCTAGTTTGG+AGG	0.522617	8.2:-5686555	MS.gene070275:CDS
AGAGGTAAGAGATGAGAAGA+AGG	0.519907	8.2:-5686756	MS.gene070275:CDS
AGATGAAGTGAAAATGGTGA+TGG	0.595216	8.2:-5686660	MS.gene070275:CDS
AGGTCTATGAAACCAAATAA+GGG	0.516554	8.2:+5686869	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGGTCTATGAAACCAAATA+AGG	+	chr8.2:5686401-5686420	None:intergenic	30.0%
AGGTCTATGAAACCAAATAA+GGG	+	chr8.2:5686400-5686419	None:intergenic	30.0%
TGAAAGAGATGAAGTGAAAA+TGG	-	chr8.2:5686600-5686619	MS.gene070275:CDS	30.0%
AACTCAACTTCTCCCTTATT+TGG	-	chr8.2:5686385-5686404	MS.gene070275:CDS	35.0%
AGATGAAGTGAAAATGGTGA+TGG	-	chr8.2:5686606-5686625	MS.gene070275:CDS	35.0%
CAGAATGAATTTGGCAAAGA+AGG	+	chr8.2:5686483-5686502	None:intergenic	35.0%
CTTCTTTGCCAAATTCATTC+TGG	-	chr8.2:5686481-5686500	MS.gene070275:CDS	35.0%
GAGGAACTTGAAGAAAAGTA+TGG	-	chr8.2:5686661-5686680	MS.gene070275:CDS	35.0%
AAACACTTCACAAAGCTCCT+TGG	+	chr8.2:5686689-5686708	None:intergenic	40.0%
AATTCATTCTGGTAGCTCAG+AGG	-	chr8.2:5686492-5686511	MS.gene070275:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	5686346	5686942	5686346	ID=MS.gene070275
chr8.2	mRNA	5686346	5686942	5686346	ID=MS.gene070275.t1;Parent=MS.gene070275
chr8.2	exon	5686346	5686942	5686346	ID=MS.gene070275.t1.exon1;Parent=MS.gene070275.t1
chr8.2	CDS	5686346	5686942	5686346	ID=cds.MS.gene070275.t1;Parent=MS.gene070275.t1

Gene Sequence

>MS.gene070275

ATGGCTCTTCCTCAAATTTCACATAGTAATAGCATTAGCAACTCAACTTCTCCCTTATTTGGTTTCATAGACCTTTTCCTATACTTGACATTTTTCAACAAAATCCACAATTTTTTCTCAAGTATATGGTTTTTCCTTCTTTGCCAAATTCATTCTGGTAGCTCAGAGGTAAGAGATGAGAAGAAGGTTTCAGAATCTAAGTGTAGCAGTCAAGAGAATGAGGCAAATGTTGGCAGAGATAATGGTTACATGATTGAAAGAGATGAAGTGAAAATGGTGATGGAAAAAATGGGATTTTTTTGCAGCTCAGAAAGTGAGGAACTTGAAGAAAAGTATGGTTCCAAGGAGCTTTGTGAAGTGTTTGAAGAGAATGAGCCTAGTTTGGAGGAGTTGAAGCAAGCTTTTGATGTTTTTGATGAGAACAAAGATGGTTTTATTGATGCAAAGGAATTGCAGAGAGTTCTTGTTATTTTGGGATTGAAACAAGGATCAGAATTTGAGAATTGCCAAAAGATGATCACAATTTTTGATGAAAATCAAGATGGAAGAATTGATTTCATTGAGTTTGTAAATATTATGAAAAACCACTTCTGCTGA

Protein sequence

>MS.gene070275.t1

MALPQISHSNSISNSTSPLFGFIDLFLYLTFFNKIHNFFSSIWFFLLCQIHSGSSEVRDEKKVSESKCSSQENEANVGRDNGYMIERDEVKMVMEKMGFFCSSESEELEEKYGSKELCEVFEENEPSLEELKQAFDVFDENKDGFIDAKELQRVLVILGLKQGSEFENCQKMITIFDENQDGRIDFIEFVNIMKNHFC